psipred-4.0-unstable-2025-07-03
checks.x86_64-linux.pkgs-psipred
· build #79
· raw
unpackPhase
1unpacking source archive /nix/store/9lzp710lsma8p3mxkygxbzvm3598vpvb-source2source root is sourceconfigurePhase
3no configure script, doing nothingbuildPhase
4make: Entering directory '/build/source/src'5gcc -O -std=gnu89 sspred_avpred.c -lm -o psipred6sspred_avpred.c: In function 'load_wts':7sspred_avpred.c:124:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]8 124 | fscanf(ifp, "%lf", &t);9 | ^~~~~~~~~~~~~~~~~~~~~~10sspred_avpred.c:131:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]11 131 | fscanf(ifp, "%lf", &t);12 | ^~~~~~~~~~~~~~~~~~~~~~13sspred_avpred.c:138:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]14 138 | fscanf(ifp, "%lf", &t);15 | ^~~~~~~~~~~~~~~~~~~~~~16sspred_avpred.c:144:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]17 144 | fscanf(ifp, "%lf", &t);18 | ^~~~~~~~~~~~~~~~~~~~~~19gcc -O -std=gnu89 sspred_hmulti.c -lm -o psipass220sspred_hmulti.c: In function 'load_wts':21sspred_hmulti.c:90:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]22 90 | fscanf(ifp, "%lf", &t);23 | ^~~~~~~~~~~~~~~~~~~~~~24sspred_hmulti.c:98:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]25 98 | fscanf(ifp, "%lf", &t);26 | ^~~~~~~~~~~~~~~~~~~~~~27sspred_hmulti.c:105:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]28 105 | fscanf(ifp, "%lf", &t);29 | ^~~~~~~~~~~~~~~~~~~~~~30gcc -O -std=gnu89 chkparse.c -lm -o chkparse31gcc -O -std=gnu89 seq2mtx.c -lm -o seq2mtx32seq2mtx.c: In function 'getseq':33seq2mtx.c:130:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]34 130 | fgets(buf, MAXSEQLEN, lfil);35 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~36seq2mtx.c:131:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]37 131 | fgets(buf, MAXSEQLEN, lfil);38 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~39seq2mtx.c:137:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]40 137 | fgets(buf, MAXSEQLEN, lfil);41 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~42seq2mtx.c:141:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]43 141 | fgets(buf, MAXSEQLEN, lfil);44 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~45seq2mtx.c:143:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]46 143 | fgets(buf, MAXSEQLEN, lfil);47 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~48seq2mtx.c:148:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]49 148 | fgets(buf, MAXSEQLEN, lfil);50 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~51make: Leaving directory '/build/source/src'fixupPhase
52shrinking RPATHs of ELF executables and libraries in /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-0353shrinking /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03/bin/psipred54shrinking /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03/bin/psipass255shrinking /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03/bin/chkparse56shrinking /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03/bin/seq2mtx57checking for references to /build/ in /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03...58patching script interpreter paths in /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-0359stripping (with command strip and flags -S -p) in /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03/libexec /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03/bininstallCheckPhase
60Generating mtx file from sequence query.fasta ...61Predicting secondary structure based on single sequence ...62Pass1 ...63Pass2 ...64Cleaning up ...65Final output files: query.ss2 query.horiz66Finished.67install check OK: 149 lines in query.ss2