Running phase: unpackPhase
unpacking source archive /nix/store/9lzp710lsma8p3mxkygxbzvm3598vpvb-source
source root is source
Running phase: patchPhase
Running phase: updateAutotoolsGnuConfigScriptsPhase
Running phase: configurePhase
no configure script, doing nothing
Running phase: buildPhase
make: Entering directory '/build/source/src'
gcc -O -std=gnu89 sspred_avpred.c -lm -o psipred
sspred_avpred.c: In function 'load_wts':
sspred_avpred.c:124:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  124 |             fscanf(ifp, "%lf", &t);
      |             ^~~~~~~~~~~~~~~~~~~~~~
sspred_avpred.c:131:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  131 |             fscanf(ifp, "%lf", &t);
      |             ^~~~~~~~~~~~~~~~~~~~~~
sspred_avpred.c:138:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  138 |             fscanf(ifp, "%lf", &t);
      |             ^~~~~~~~~~~~~~~~~~~~~~
sspred_avpred.c:144:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  144 |         fscanf(ifp, "%lf", &t);
      |         ^~~~~~~~~~~~~~~~~~~~~~
gcc -O -std=gnu89 sspred_hmulti.c -lm -o psipass2
sspred_hmulti.c: In function 'load_wts':
sspred_hmulti.c:90:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   90 |             fscanf(ifp, "%lf", &t);
      |             ^~~~~~~~~~~~~~~~~~~~~~
sspred_hmulti.c:98:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   98 |             fscanf(ifp, "%lf", &t);
      |             ^~~~~~~~~~~~~~~~~~~~~~
sspred_hmulti.c:105:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  105 |         fscanf(ifp, "%lf", &t);
      |         ^~~~~~~~~~~~~~~~~~~~~~
gcc -O -std=gnu89 chkparse.c -lm -o chkparse
gcc -O -std=gnu89 seq2mtx.c -lm -o seq2mtx
seq2mtx.c: In function 'getseq':
seq2mtx.c:130:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  130 |             fgets(buf, MAXSEQLEN, lfil);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
seq2mtx.c:131:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  131 |         fgets(buf, MAXSEQLEN, lfil);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~
seq2mtx.c:137:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  137 |             fgets(buf, MAXSEQLEN, lfil);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
seq2mtx.c:141:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  141 |         fgets(buf, MAXSEQLEN, lfil);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~
seq2mtx.c:143:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  143 |         fgets(buf, MAXSEQLEN, lfil);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~
seq2mtx.c:148:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  148 |         fgets(buf, MAXSEQLEN, lfil);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~
make: Leaving directory '/build/source/src'
Running phase: installPhase
Running phase: fixupPhase
shrinking RPATHs of ELF executables and libraries in /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03
shrinking /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03/bin/psipred
shrinking /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03/bin/psipass2
shrinking /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03/bin/chkparse
shrinking /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03/bin/seq2mtx
checking for references to /build/ in /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03...
patching script interpreter paths in /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03
stripping (with command strip and flags -S -p) in /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03/libexec /nix/store/7bfm12p7s1ivynhphp4l0l9rl9gmq0ck-psipred-4.0-unstable-2025-07-03/bin
Running phase: installCheckPhase
Generating mtx file from sequence query.fasta ...
Predicting secondary structure based on single sequence ...
Pass1 ...
Pass2 ...
Cleaning up ...
Final output files: query.ss2 query.horiz
Finished.
install check OK: 149 lines in query.ss2