foldseek-10-941cd33
checks.x86_64-linux.pkgs-foldseek
· build #65
· raw
1Using checkPhaseThreadLimitHook
unpackPhase
2unpacking source archive /nix/store/1g2298s2bz7py868im4h43k0v913xzgd-source3source root is sourcepatchPhase
4patching script interpreter paths in lib/mmseqs/cmake/xxdi.pl5lib/mmseqs/cmake/xxdi.pl: interpreter directive changed from "#!/usr/bin/env perl" to "/nix/store/kfqbfq23lafkrbhxxblzf65baqz5p1ia-perl-5.42.3/bin/perl"6patching script interpreter paths in cmake/xxdi.pl7find: 'cmake/xxdi.pl': No such file or directoryconfigurePhase
8cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/share/doc/foldseek -DCMAKE_INSTALL_INFODIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/share/man -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/include -DCMAKE_INSTALL_SBINDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/lib -DCMAKE_STRIP=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/strip -DCMAKE_RANLIB=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/ranlib -DCMAKE_AR=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/ar -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_INSTALL_PREFIX=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 -DHAVE_AVX2=19-- The C compiler identification is GNU 15.3.010-- The CXX compiler identification is GNU 15.3.011-- Detecting C compiler ABI info12-- Detecting C compiler ABI info - done13-- Check for working C compiler: /nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/gcc - skipped14-- Detecting C compile features15-- Detecting C compile features - done16-- Detecting CXX compiler ABI info17-- Detecting CXX compiler ABI info - done18-- Check for working CXX compiler: /nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/g++ - skipped19-- Detecting CXX compile features20-- Detecting CXX compile features - done21CMake Deprecation Warning at lib/mmseqs/CMakeLists.txt:1 (cmake_minimum_required):22 Compatibility with CMake < 3.10 will be removed from a future version of23 CMake.2425 Update the VERSION argument <min> value. Or, use the <min>...<max> syntax26 to tell CMake that the project requires at least <min> but has been updated27 to work with policies introduced by <max> or earlier.282930-- Source Directory: /build/source/lib/mmseqs31-- Project Directory: /build/source/lib/mmseqs32-- Compiler is GNU 33-- ZSTD VERSION 1.3.834CMake Deprecation Warning at lib/mmseqs/lib/tinyexpr/CMakeLists.txt:1 (cmake_minimum_required):35 Compatibility with CMake < 3.10 will be removed from a future version of36 CMake.3738 Update the VERSION argument <min> value. Or, use the <min>...<max> syntax39 to tell CMake that the project requires at least <min> but has been updated40 to work with policies introduced by <max> or earlier.414243-- xxd not found, using xxdi.pl instead44-- ShellCheck disabled45-- Performing Test HAVE_POSIX_FADVISE46-- Performing Test HAVE_POSIX_FADVISE - Success47-- Performing Test HAVE_POSIX_MADVISE48-- Performing Test HAVE_POSIX_MADVISE - Success49-- Performing Test ATOMIC_NATIVE50-- Performing Test ATOMIC_NATIVE - Failed51-- Performing Test ATOMIC_WITH_LIB52-- Performing Test ATOMIC_WITH_LIB - Success53-- Found Atomic: -latomic54-- IPS4O sorting works55-- Found ZLIB56-- Performing Test HAVE_ZLIB_CHECK57-- Performing Test HAVE_ZLIB_CHECK - Success58-- ZLIB works59-- Found BZLIB60-- Performing Test HAVE_BZLIB_CHECK61-- Performing Test HAVE_BZLIB_CHECK - Success62-- BZLIB works63-- Found OpenMP64CMake Deprecation Warning at lib/foldcomp/CMakeLists.txt:2 (cmake_minimum_required):65 Compatibility with CMake < 3.10 will be removed from a future version of66 CMake.6768 Update the VERSION argument <min> value. Or, use the <min>...<max> syntax69 to tell CMake that the project requires at least <min> but has been updated70 to work with policies introduced by <max> or earlier.717273-- xxd not found, using xxdi.pl instead74-- ShellCheck not found75-- Rust Target: x86_64-unknown-linux-gnu76-- Determining required link libraries for target x86_64-unknown-linux-gnu77-- Required static libs for target x86_64-unknown-linux-gnu: gcc_s;util;rt;pthread;m;dl;c78-- Found Rust: /nix/store/yaa1sq5g4jar7rvlspy7kk2wd98nj6qh-rustc-wrapper-1.97.1/bin/rustc (found version "1.97.1")79-- Using Corrosion as a subdirectory80-- Rust Feature: simd_avx281-- Could NOT find Git (missing: GIT_EXECUTABLE) 82CMake Warning at lib/prostt5/cmake/build-info.cmake:14 (message):83 Git not found. Build info will not be accurate.84Call Stack (most recent call first):85 lib/prostt5/CMakeLists.txt:82 (include)868788-- Performing Test CMAKE_HAVE_LIBC_PTHREAD89-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success90-- Found Threads: TRUE91-- Warning: ccache not found - consider installing it for faster compilation or disable this warning with GGML_CCACHE=OFF92-- CMAKE_SYSTEM_PROCESSOR: x86_6493-- Including CPU backend94-- x86 detected95-- Adding CPU backend variant ggml-cpu: -msse2;-msse3;-mssse3;-msse4.1;-mf16c;-mfma;-mavx;-mavx2 GGML_SSE41;GGML_F16C;GGML_FMA;GGML_AVX;GGML_AVX296-- Configuring done (3.2s)97-- Generating done (0.1s)98CMake Warning:99 Manually-specified variables were not used by the project:100101 BUILD_TESTING102 CMAKE_EXPORT_NO_PACKAGE_REGISTRY103104105-- Build files have been written to: /build/source/build106cmake: enabled parallel building107cmake: enabled parallel installingbuildPhase
108build flags: -j48 SHELL=/nix/store/9ipfvwnqp1q8ijnmi5sxvlx9r8w34lw3-bash-5.3p15/bin/bash109[ 0%] Built target cargo-prebuild_block_aligner_c110[ 0%] Building CXX object lib/mmseqs/lib/tantan/CMakeFiles/tantan.dir/tantan.cpp.o111[ 1%] Building C object lib/mmseqs/lib/microtar/CMakeFiles/microtar.dir/microtar.c.o112[ 1%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/entropy_common.c.o113[ 1%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o114[ 1%] Building C object lib/mmseqs/lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o115[ 2%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o116[ 2%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o117[ 3%] Building CXX object lib/mmseqs/lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o118[ 3%] Building C object 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lib/foldcomp/CMakeFiles/foldcomp.dir/src/utility.cpp.o195[ 24%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o196[ 24%] Built target microtar197[ 24%] Generating ../generated/map.sh.h198[ 24%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o199[ 25%] Generating ../generated/createstructsubdb.sh.h200[ 26%] Generating ../generated/rbh.sh.h201[ 26%] Generating ../generated/multimersearch.sh.h202[ 26%] Generating ../generated/easymultimersearch.sh.h203[ 27%] Generating ../generated/linclust.sh.h204[ 27%] Generating ../generated/multimercluster.sh.h205[ 27%] Generating ../generated/clustering.sh.h206[ 27%] Generating ../generated/cascaded_clustering.sh.h207[ 27%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_opt.c.o208[ 27%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-quants.c.o209[ 27%] Generating ../generated/easymultimercluster.sh.h210warning: `extern` declarations without an explicit ABI are deprecated211 --> ../src/ffi.rs:32:12212 |21332 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix {214 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`215 |216 = note: `#[warn(missing_abi)]` on by default217218warning: `extern` declarations without an explicit ABI are deprecated219 --> ../src/ffi.rs:39:12220 |22139 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) {222 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`223224warning: `extern` declarations without an explicit ABI are deprecated225 --> ../src/ffi.rs:46:12226 |22746 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) {228 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`229230warning: `extern` declarations without an explicit ABI are deprecated231 --> ../src/ffi.rs:61:12232 |23361 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile {234 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`235236warning: `extern` declarations without an explicit ABI are deprecated237 --> ../src/ffi.rs:68:12238 |23968 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize {240 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`241242warning: `extern` declarations without an explicit ABI are deprecated243 --> ../src/ffi.rs:76:12244 |24576 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) {246 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`247248warning: `extern` declarations without an explicit ABI are deprecated249 --> ../src/ffi.rs:86:12250 |25186 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) {252 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`253254warning: `extern` declarations without an explicit ABI are deprecated255 --> ../src/ffi.rs:97:12256 |25797 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {258 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`259260warning: `extern` declarations without an explicit ABI are deprecated261 --> ../src/ffi.rs:108:12262 |263108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {264 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`265266warning: `extern` declarations without an explicit ABI are deprecated267 --> ../src/ffi.rs:119:12268 |269119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {270 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`271272warning: `extern` declarations without an explicit ABI are deprecated273 --> ../src/ffi.rs:126:12274 |275126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 {276 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`277278warning: `extern` declarations without an explicit ABI are deprecated279 --> ../src/ffi.rs:133:12280 |281133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 {282 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`283284warning: `extern` declarations without an explicit ABI are deprecated285 --> ../src/ffi.rs:140:12286 |287140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) {288 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`289290warning: `extern` declarations without an explicit ABI are deprecated291 --> ../src/ffi.rs:149:12292 |293149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar {294 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`295296warning: `extern` declarations without an explicit ABI are deprecated297 --> ../src/ffi.rs:156:12298 |299156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen {300 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`301302warning: `extern` declarations without an explicit ABI are deprecated303 --> ../src/ffi.rs:163:12304 |305163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize {306 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`307308warning: `extern` declarations without an explicit ABI are deprecated309 --> ../src/ffi.rs:170:12310 |311170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) {312 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`313314warning: `extern` declarations without an explicit ABI are deprecated315 --> ../src/ffi.rs:179:12316 |317179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes {318 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`319320warning: `extern` declarations without an explicit ABI are deprecated321 --> ../src/ffi.rs:186:12322 |323186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) {324 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`325326warning: `extern` declarations without an explicit ABI are deprecated327 --> ../src/ffi.rs:194:12328 |329194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) {330 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`331332warning: `extern` declarations without an explicit ABI are deprecated333 --> ../src/ffi.rs:203:12334 |335203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias {336 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`337338warning: `extern` declarations without an explicit ABI are deprecated339 --> ../src/ffi.rs:210:12340 |341210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) {342 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`343344warning: `extern` declarations without an explicit ABI are deprecated345 --> ../src/ffi.rs:218:12346 |347218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) {348 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`349350warning: `extern` declarations without an explicit ABI are deprecated351 --> ../src/ffi.rs:237:20352 |353237 | pub unsafe extern fn $new_name(query_len: usize,354 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`355...356315 | / gen_functions!(357316 | | block_new_aa,358317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",359318 | | block_align_aa,360... |361332 | | AAMatrix, AAProfile, false, false362333 | | );363 | |_- in this macro invocation364 |365 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)366367warning: `extern` declarations without an explicit ABI are deprecated368 --> ../src/ffi.rs:246:20369 |370246 | pub unsafe extern fn $align_name(b: BlockHandle,371 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`372...373315 | / gen_functions!(374316 | | block_new_aa,375317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",376318 | | block_align_aa,377... |378332 | | AAMatrix, AAProfile, false, false379333 | | );380 | |_- in this macro invocation381 |382 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)383384warning: `extern` declarations without an explicit ABI are deprecated385 --> ../src/ffi.rs:259:20386 |387259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,388 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`389...390315 | / gen_functions!(391316 | | block_new_aa,392317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",393318 | | block_align_aa,394... |395332 | | AAMatrix, AAProfile, false, false396333 | | );397 | |_- in this macro invocation398 |399 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)400401warning: `extern` declarations without an explicit ABI are deprecated402 --> ../src/ffi.rs:270:20403 |404270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,405 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`406...407315 | / gen_functions!(408316 | | block_new_aa,409317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",410318 | | block_align_aa,411... |412332 | | AAMatrix, AAProfile, false, false413333 | | );414 | |_- in this macro invocation415 |416 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)417418warning: `extern` declarations without an explicit ABI are deprecated419 --> ../src/ffi.rs:288:20420 |421288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {422 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`423...424315 | / gen_functions!(425316 | | block_new_aa,426317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",427318 | | block_align_aa,428... |429332 | | AAMatrix, AAProfile, false, false430333 | | );431 | |_- in this macro invocation432 |433 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)434435warning: `extern` declarations without an explicit ABI are deprecated436 --> ../src/ffi.rs:295:20437 |438295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {439 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`440...441315 | / gen_functions!(442316 | | block_new_aa,443317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",444318 | | block_align_aa,445... |446332 | | AAMatrix, AAProfile, false, false447333 | | );448 | |_- in this macro invocation449 |450 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)451452warning: `extern` declarations without an explicit ABI are deprecated453 --> ../src/ffi.rs:302:20454 |455302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...456 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`457...458315 | / gen_functions!(459316 | | block_new_aa,460317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",461318 | | block_align_aa,462... |463332 | | AAMatrix, AAProfile, false, false464333 | | );465 | |_- in this macro invocation466 |467 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)468469warning: `extern` declarations without an explicit ABI are deprecated470 --> ../src/ffi.rs:309:20471 |472309 | pub unsafe extern fn $free_name(b: BlockHandle) {473 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`474...475315 | / gen_functions!(476316 | | block_new_aa,477317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",478318 | | block_align_aa,479... |480332 | | AAMatrix, AAProfile, false, false481333 | | );482 | |_- in this macro invocation483 |484 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)485486warning: `extern` declarations without an explicit ABI are deprecated487 --> ../src/ffi.rs:237:20488 |489237 | pub unsafe extern fn $new_name(query_len: usize,490 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`491...492335 | / gen_functions!(493336 | | block_new_aa_xdrop,494337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",495338 | | block_align_aa_xdrop,496... |497352 | | AAMatrix, AAProfile, false, true498353 | | );499 | |_- in this macro invocation500 |501 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)502503warning: `extern` declarations without an explicit ABI are deprecated504 --> ../src/ffi.rs:246:20505 |506246 | pub unsafe extern fn $align_name(b: BlockHandle,507 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`508...509335 | / gen_functions!(510336 | | block_new_aa_xdrop,511337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",512338 | | block_align_aa_xdrop,513... |514352 | | AAMatrix, AAProfile, false, true515353 | | );516 | |_- in this macro invocation517 |518 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)519520warning: `extern` declarations without an explicit ABI are deprecated521 --> ../src/ffi.rs:259:20522 |523259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,524 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`525...526335 | / gen_functions!(527336 | | block_new_aa_xdrop,528337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",529338 | | block_align_aa_xdrop,530... |531352 | | AAMatrix, AAProfile, false, true532353 | | );533 | |_- in this macro invocation534 |535 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)536537warning: `extern` declarations without an explicit ABI are deprecated538 --> ../src/ffi.rs:270:20539 |540270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,541 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`542...543335 | / gen_functions!(544336 | | block_new_aa_xdrop,545337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",546338 | | block_align_aa_xdrop,547... |548352 | | AAMatrix, AAProfile, false, true549353 | | );550 | |_- in this macro invocation551 |552 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)553554warning: `extern` declarations without an explicit ABI are deprecated555 --> ../src/ffi.rs:288:20556 |557288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {558 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`559...560335 | / gen_functions!(561336 | | block_new_aa_xdrop,562337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",563338 | | block_align_aa_xdrop,564... |565352 | | AAMatrix, AAProfile, false, true566353 | | );567 | |_- in this macro invocation568 |569 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)570571warning: `extern` declarations without an explicit ABI are deprecated572 --> ../src/ffi.rs:295:20573 |574295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {575 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`576...577335 | / gen_functions!(578336 | | block_new_aa_xdrop,579337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",580338 | | block_align_aa_xdrop,581... |582352 | | AAMatrix, AAProfile, false, true583353 | | );584 | |_- in this macro invocation585 |586 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)587588warning: `extern` declarations without an explicit ABI are deprecated589 --> ../src/ffi.rs:302:20590 |591302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...592 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`593...594335 | / gen_functions!(595336 | | block_new_aa_xdrop,596337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",597338 | | block_align_aa_xdrop,598... |599352 | | AAMatrix, AAProfile, false, true600353 | | );601 | |_- in this macro invocation602 |603 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)604605warning: `extern` declarations without an explicit ABI are deprecated606 --> ../src/ffi.rs:309:20607 |608309 | pub unsafe extern fn $free_name(b: BlockHandle) {609 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`610...611335 | / gen_functions!(612336 | | block_new_aa_xdrop,613337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",614338 | | block_align_aa_xdrop,615... |616352 | | AAMatrix, AAProfile, false, true617353 | | );618 | |_- in this macro invocation619 |620 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)621622warning: `extern` declarations without an explicit ABI are deprecated623 --> ../src/ffi.rs:237:20624 |625237 | pub unsafe extern fn $new_name(query_len: usize,626 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`627...628355 | / gen_functions!(629356 | | block_new_aa_trace,630357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",631358 | | block_align_aa_trace,632... |633372 | | AAMatrix, AAProfile, true, false634373 | | );635 | |_- in this macro invocation636 |637 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)638639warning: `extern` declarations without an explicit ABI are deprecated640 --> ../src/ffi.rs:246:20641 |642246 | pub unsafe extern fn $align_name(b: BlockHandle,643 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`644...645355 | / gen_functions!(646356 | | block_new_aa_trace,647357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",648358 | | block_align_aa_trace,649... |650372 | | AAMatrix, AAProfile, true, false651373 | | );652 | |_- in this macro invocation653 |654 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)655656warning: `extern` declarations without an explicit ABI are deprecated657 --> ../src/ffi.rs:259:20658 |659259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,660 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`661...662355 | / gen_functions!(663356 | | block_new_aa_trace,664357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",665358 | | block_align_aa_trace,666... |667372 | | AAMatrix, AAProfile, true, false668373 | | );669 | |_- in this macro invocation670 |671 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)672673warning: `extern` declarations without an explicit ABI are deprecated674 --> ../src/ffi.rs:270:20675 |676270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,677 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`678...679355 | / gen_functions!(680356 | | block_new_aa_trace,681357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",682358 | | block_align_aa_trace,683... |684372 | | AAMatrix, AAProfile, true, false685373 | | );686 | |_- in this macro invocation687 |688 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)689690warning: `extern` declarations without an explicit ABI are deprecated691 --> ../src/ffi.rs:288:20692 |693288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {694 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`695...696355 | / gen_functions!(697356 | | block_new_aa_trace,698357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",699358 | | block_align_aa_trace,700... |701372 | | AAMatrix, AAProfile, true, false702373 | | );703 | |_- in this macro invocation704 |705 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)706[ 27%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_ldm.c.o707[ 28%] Generating ../generated/update_clustering.sh.h708709warning: `extern` declarations without an explicit ABI are deprecated710 --> ../src/ffi.rs:295:20711 |712295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {713 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`714...715355 | / gen_functions!(716356 | | block_new_aa_trace,717357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",718358 | | block_align_aa_trace,719... |720372 | | AAMatrix, AAProfile, true, false721373 | | );722 | |_- in this macro invocation723 |724 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)725726warning: `extern` declarations without an explicit ABI are deprecated727 --> ../src/ffi.rs:302:20728 |729302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...730 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`731...732355 | / gen_functions!(733356 | | block_new_aa_trace,734357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",735358 | | block_align_aa_trace,736... |737372 | | AAMatrix, AAProfile, true, false738373 | | );739 | |_- in this macro invocation740 |741 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)742743warning: `extern` declarations without an explicit ABI are deprecated744 --> ../src/ffi.rs:309:20745 |746309 | pub unsafe extern fn $free_name(b: BlockHandle) {747 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`748...749355 | / gen_functions!(750356 | | block_new_aa_trace,751357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",752358 | | block_align_aa_trace,753... |754372 | | AAMatrix, AAProfile, true, false755373 | | );756 | |_- in this macro invocation757 |758 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)759760warning: `extern` declarations without an explicit ABI are deprecated761 --> ../src/ffi.rs:237:20762 |763237 | pub unsafe extern fn $new_name(query_len: usize,764 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`765...766375 | / gen_functions!(767376 | | block_new_aa_trace_xdrop,768377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",769378 | | block_align_aa_trace_xdrop,770... |771392 | | AAMatrix, AAProfile, true, true772393 | | );773 | |_- in this macro invocation774 |775 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)776777warning: `extern` declarations without an explicit ABI are deprecated778 --> ../src/ffi.rs:246:20779 |780246 | pub unsafe extern fn $align_name(b: BlockHandle,781 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`782...783375 | / gen_functions!(784376 | | block_new_aa_trace_xdrop,785377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",786378 | | block_align_aa_trace_xdrop,787... |788392 | | AAMatrix, AAProfile, true, true789393 | | );790 | |_- in this macro invocation791 |792 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)793794warning: `extern` declarations without an explicit ABI are deprecated795 --> ../src/ffi.rs:259:20796 |797259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,798 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`799...800375 | / gen_functions!(801376 | | block_new_aa_trace_xdrop,802377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",803378 | | block_align_aa_trace_xdrop,804... |805392 | | AAMatrix, AAProfile, true, true806393 | | );807 | |_- in this macro invocation808 |809 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)810811warning: `extern` declarations without an explicit ABI are deprecated812 --> ../src/ffi.rs:270:20813 |814270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,815 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`816...817375 | / gen_functions!(818376 | | block_new_aa_trace_xdrop,819377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",820378 | | block_align_aa_trace_xdrop,821... |822392 | | AAMatrix, AAProfile, true, true823393 | | );824 | |_- in this macro invocation825 |826 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)827828warning: `extern` declarations without an explicit ABI are deprecated829 --> ../src/ffi.rs:288:20830 |831288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {832 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`833...834375 | / gen_functions!(835376 | | block_new_aa_trace_xdrop,836377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",837378 | | block_align_aa_trace_xdrop,838... |839392 | | AAMatrix, AAProfile, true, true840393 | | );841 | |_- in this macro invocation842 |843 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)844845warning: `extern` declarations without an explicit ABI are deprecated846 --> ../src/ffi.rs:295:20847 |848295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {849 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`850...851375 | / gen_functions!(852376 | | block_new_aa_trace_xdrop,853377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",854378 | | block_align_aa_trace_xdrop,855... |856392 | | AAMatrix, AAProfile, true, true857393 | | );858 | |_- in this macro invocation859 |860 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)861862warning: `extern` declarations without an explicit ABI are deprecated863 --> ../src/ffi.rs:302:20864 |865302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...866 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`867...868375 | / gen_functions!(869376 | | block_new_aa_trace_xdrop,870377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",871378 | | block_align_aa_trace_xdrop,872... |873392 | | AAMatrix, AAProfile, true, true874393 | | );875 | |_- in this macro invocation876 |877 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)878879warning: `extern` declarations without an explicit ABI are deprecated880 --> ../src/ffi.rs:309:20881 |882309 | pub unsafe extern fn $free_name(b: BlockHandle) {883 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`884...885375 | / gen_functions!(886376 | | block_new_aa_trace_xdrop,887377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",888378 | | block_align_aa_trace_xdrop,889... |890392 | | AAMatrix, AAProfile, true, true891393 | | );892 | |_- in this macro invocation893 |894 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)895896[ 29%] Generating ../generated/searchtargetprofile.sh.h897[ 29%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/huf_decompress.c.o898[ 29%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress.c.o899/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base':900/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]901 373 | ret->bound = s->bound;902 | ^~903In function 'new_expr',904 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:372:19:905/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'906 88 | te_expr *ret = malloc(size);907 | ^~~~~~~~~~~~908In function 'new_expr',909 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19:910/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]911 93 | ret->type = type;912 | ~~~~~~~~~~^~~~~~913/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'914 88 | te_expr *ret = malloc(size);915 | ^~~~~~~~~~~~916/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base':917/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]918 367 | ret->value = s->value;919 | ^~920In function 'new_expr',921 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19:922/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'923 88 | te_expr *ret = malloc(size);924 | ^~~~~~~~~~~~925/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base':926/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]927 446 | ret->value = NAN;928 | ^~929In function 'new_expr',930 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:444:19:931/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'932 88 | te_expr *ret = malloc(size);933 | ^~~~~~~~~~~~934[ 30%] Generating ../generated/createindex.sh.h935[ 30%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress_block.c.o936[ 30%] Generating ../generated/createtaxdb.sh.h937[ 30%] Generating ../generated/translated_search.sh.h938[ 30%] Generating ../generated/taxpercontig.sh.h939[ 30%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_ddict.c.o940[ 31%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/cover.c.o941[ 31%] Generating ../generated/multihitdb.sh.h942[ 32%] Generating ../generated/multihitsearch.sh.h943[ 33%] Generating ../generated/enrich.sh.h944[ 33%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/fastcover.c.o945[ 33%] Generating ../generated/blastn.sh.h946[ 33%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/divsufsort.c.o947[ 33%] Generating ../generated/searchslicedtargetprofile.sh.h948[ 33%] Building C object 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target tantan963[ 36%] Built target ksw2964[ 36%] Built target alp965warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions)966 Finished `release` profile [optimized] target(s) in 5.01s967Copying byproducts `libblock_aligner_c.a` to /build/source/build968[ 36%] Built target _cargo-build_block_aligner_c969[ 36%] Built target cargo-build_block_aligner_c970[ 36%] Built target generated971[ 36%] Linking CXX static library libggml-base.a972[ 36%] Built target ggml-base973[ 36%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu.c.o974[ 36%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-aarch64.cpp.o975[ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu.cpp.o976[ 37%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-quants.c.o977[ 37%] Building CXX object 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library libggml-cpu.a1093[ 67%] Built target ggml-cpu1094[ 67%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml.dir/ggml-backend-reg.cpp.o1095[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o1096[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/gpuserver.cpp.o1097[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o1098[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o1099[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o1100[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o1101[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o1102/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp: In function 'std::wstring utf8_to_utf16(const std::string&)':1103/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:76:10: warning: 'template<class _Codecvt, class _Elem, class _Wide_alloc, class _Byte_alloc> class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations]1104 76 | std::wstring_convert<std::codecvt_utf8_utf16<wchar_t>> converter;1105 | ^~~~~~~~~~~~~~~1106In file included from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/locale:47,1107 from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/fs_path.h:36,1108 from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/filesystem:54,1109 from /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:7:1110/nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here1111 262 | class _GLIBCXX17_DEPRECATED wstring_convert1112 | ^~~~~~~~~~~~~~~1113/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp: In function 'std::string utf16_to_utf8(const std::wstring&)':1114/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:81:10: warning: 'template<class _Codecvt, class _Elem, class _Wide_alloc, class _Byte_alloc> class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations]1115 81 | std::wstring_convert<std::codecvt_utf8_utf16<wchar_t>> converter;1116 | ^~~~~~~~~~~~~~~1117/nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here1118 262 | class _GLIBCXX17_DEPRECATED wstring_convert1119 | ^~~~~~~~~~~~~~~1120[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o1121[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o1122[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o1123[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o1124[ 70%] 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Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o1156[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o1157[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o1158[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o1159[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o1160[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o1161[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o1162/build/source/lib/mmseqs/src/util/result2flat.cpp: In function 'int result2flat(int, const char**, const Command&)':1163/build/source/lib/mmseqs/src/util/result2flat.cpp:65:37: warning: ignoring return value of 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>; size_type = long unsigned int]', declared with attribute 'nodiscard' [-Wunused-result]1164 65 | dbKeyBuffer.size();1165 | ~~~~~~~~~~~~~~~~^~1166In file included from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/string:56,1167 from /build/source/lib/mmseqs/src/commons/Parameters.h:7,1168 from /build/source/lib/mmseqs/src/util/result2flat.cpp:2:1169/nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/basic_string.h:1163:7: note: declared here1170 1163 | size() const _GLIBCXX_NOEXCEPT1171 | ^~~~1172[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o1173[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o1174[ 80%] Building CXX object 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/nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/locale:47,1204 from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/regex:43,1205 from /build/source/lib/prostt5/src/unicode.cpp:13:1206/nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here1207 262 | class _GLIBCXX17_DEPRECATED wstring_convert1208 | ^~~~~~~~~~~~~~~1209[ 88%] Linking CXX static library libgemmiwrapper.a1210[ 88%] Built target gemmiwrapper1211[ 88%] Linking CXX static library libllama.a1212[ 88%] Built target llama1213[ 88%] Building CXX object src/CMakeFiles/prostt5.dir/strucclustutils/ProstT5.cpp.o1214[ 89%] Linking CXX static library libprostt5.a1215[ 89%] Built target prostt51216[ 89%] Linking CXX static library libmmseqs-framework.a1217[ 89%] Built target mmseqs-framework1218[ 89%] Building CXX object lib/3di/CMakeFiles/3di.dir/structureto3di.cpp.o1219[ 89%] Building CXX object 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1273install flags: -j48 SHELL=/nix/store/9ipfvwnqp1q8ijnmi5sxvlx9r8w34lw3-bash-5.3p15/bin/bash install1274[ 1%] Built target version1275[ 3%] Built target cargo-prebuild_block_aligner_c1276[ 6%] Built target local-generated1277[ 7%] Built target microtar1278[ 18%] Built target generated1279[ 19%] Built target tinyexpr1280[ 19%] Built target tantan1281[ 20%] Built target ksw21282[ 27%] Built target libzstd_static1283[ 29%] Built target ggml-base1284[ 32%] Built target foldcomp1285[ 36%] Built target alp1286warning: `extern` declarations without an explicit ABI are deprecated1287 --> ../src/ffi.rs:32:121288 |128932 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix {1290 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1291 |1292 = note: `#[warn(missing_abi)]` on by default12931294warning: `extern` declarations without an explicit ABI are deprecated1295 --> ../src/ffi.rs:39:121296 |129739 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) {1298 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`12991300warning: `extern` declarations without an explicit ABI are deprecated1301 --> ../src/ffi.rs:46:121302 |130346 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) {1304 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13051306warning: `extern` declarations without an explicit ABI are deprecated1307 --> ../src/ffi.rs:61:121308 |130961 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile {1310 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13111312warning: `extern` declarations without an explicit ABI are deprecated1313 --> ../src/ffi.rs:68:121314 |131568 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize {1316 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13171318warning: `extern` declarations without an explicit ABI are deprecated1319 --> ../src/ffi.rs:76:121320 |132176 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) {1322 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13231324warning: `extern` declarations without an explicit ABI are deprecated1325 --> ../src/ffi.rs:86:121326 |132786 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) {1328 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13291330warning: `extern` declarations without an explicit ABI are deprecated1331 --> ../src/ffi.rs:97:121332 |133397 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {1334 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13351336warning: `extern` declarations without an explicit ABI are deprecated1337 --> ../src/ffi.rs:108:121338 |1339108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {1340 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13411342warning: `extern` declarations without an explicit ABI are deprecated1343 --> ../src/ffi.rs:119:121344 |1345119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {1346 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13471348warning: `extern` declarations without an explicit ABI are deprecated1349 --> ../src/ffi.rs:126:121350 |1351126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 {1352 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13531354warning: `extern` declarations without an explicit ABI are deprecated1355 --> ../src/ffi.rs:133:121356 |1357133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 {1358 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13591360warning: `extern` declarations without an explicit ABI are deprecated1361 --> ../src/ffi.rs:140:121362 |1363140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) {1364 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13651366warning: `extern` declarations without an explicit ABI are deprecated1367 --> ../src/ffi.rs:149:121368 |1369149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar {1370 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13711372warning: `extern` declarations without an explicit ABI are deprecated1373 --> ../src/ffi.rs:156:121374 |1375156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen {1376 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13771378warning: `extern` declarations without an explicit ABI are deprecated1379 --> ../src/ffi.rs:163:121380 |1381163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize {1382 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13831384warning: `extern` declarations without an explicit ABI are deprecated1385 --> ../src/ffi.rs:170:121386 |1387170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) {1388 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13891390warning: `extern` declarations without an explicit ABI are deprecated1391 --> ../src/ffi.rs:179:121392 |1393179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes {1394 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13951396warning: `extern` declarations without an explicit ABI are deprecated1397 --> ../src/ffi.rs:186:121398 |1399186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) {1400 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14011402warning: `extern` declarations without an explicit ABI are deprecated1403 --> ../src/ffi.rs:194:121404 |1405194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) {1406 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14071408warning: `extern` declarations without an explicit ABI are deprecated1409 --> ../src/ffi.rs:203:121410 |1411203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias {1412 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14131414warning: `extern` declarations without an explicit ABI are deprecated1415 --> ../src/ffi.rs:210:121416 |1417210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) {1418 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14191420warning: `extern` declarations without an explicit ABI are deprecated1421 --> ../src/ffi.rs:218:121422 |1423218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) {1424 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14251426warning: `extern` declarations without an explicit ABI are deprecated1427 --> ../src/ffi.rs:237:201428 |1429237 | pub unsafe extern fn $new_name(query_len: usize,1430 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1431...1432315 | / gen_functions!(1433316 | | block_new_aa,1434317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1435318 | | block_align_aa,1436... |1437332 | | AAMatrix, AAProfile, false, false1438333 | | );1439 | |_- in this macro invocation1440 |1441 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)14421443warning: `extern` declarations without an explicit ABI are deprecated1444 --> ../src/ffi.rs:246:201445 |1446246 | pub unsafe extern fn $align_name(b: BlockHandle,1447 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1448...1449315 | / gen_functions!(1450316 | | block_new_aa,1451317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1452318 | | block_align_aa,1453... |1454332 | | AAMatrix, AAProfile, false, false1455333 | | );1456 | |_- in this macro invocation1457 |1458 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)14591460warning: `extern` declarations without an explicit ABI are deprecated1461 --> ../src/ffi.rs:259:201462 |1463259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1464 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1465...1466315 | / gen_functions!(1467316 | | block_new_aa,1468317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1469318 | | block_align_aa,1470... |1471332 | | AAMatrix, AAProfile, false, false1472333 | | );1473 | |_- in this macro invocation1474 |1475 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)14761477warning: `extern` declarations without an explicit ABI are deprecated1478 --> ../src/ffi.rs:270:201479 |1480270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1481 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1482...1483315 | / gen_functions!(1484316 | | block_new_aa,1485317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1486318 | | block_align_aa,1487... |1488332 | | AAMatrix, AAProfile, false, false1489333 | | );1490 | |_- in this macro invocation1491 |1492 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)14931494warning: `extern` declarations without an explicit ABI are deprecated1495 --> ../src/ffi.rs:288:201496 |1497288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1498 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1499...1500315 | / gen_functions!(1501316 | | block_new_aa,1502317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1503318 | | block_align_aa,1504... |1505332 | | AAMatrix, AAProfile, false, false1506333 | | );1507 | |_- in this macro invocation1508 |1509 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15101511warning: `extern` declarations without an explicit ABI are deprecated1512 --> ../src/ffi.rs:295:201513 |1514295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1515 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1516...1517315 | / gen_functions!(1518316 | | block_new_aa,1519317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1520318 | | block_align_aa,1521... |1522332 | | AAMatrix, AAProfile, false, false1523333 | | );1524 | |_- in this macro invocation1525 |1526 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15271528warning: `extern` declarations without an explicit ABI are deprecated1529 --> ../src/ffi.rs:302:201530 |1531302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1532 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1533...1534315 | / gen_functions!(1535316 | | block_new_aa,1536317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1537318 | | block_align_aa,1538... |1539332 | | AAMatrix, AAProfile, false, false1540333 | | );1541 | |_- in this macro invocation1542 |1543 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15441545warning: `extern` declarations without an explicit ABI are deprecated1546 --> ../src/ffi.rs:309:201547 |1548309 | pub unsafe extern fn $free_name(b: BlockHandle) {1549 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1550...1551315 | / gen_functions!(1552316 | | block_new_aa,1553317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1554318 | | block_align_aa,1555... |1556332 | | AAMatrix, AAProfile, false, false1557333 | | );1558 | |_- in this macro invocation1559 |1560 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15611562warning: `extern` declarations without an explicit ABI are deprecated1563 --> ../src/ffi.rs:237:201564 |1565237 | pub unsafe extern fn $new_name(query_len: usize,1566 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1567...1568335 | / gen_functions!(1569336 | | block_new_aa_xdrop,1570337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1571338 | | block_align_aa_xdrop,1572... |1573352 | | AAMatrix, AAProfile, false, true1574353 | | );1575 | |_- in this macro invocation1576 |1577 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15781579warning: `extern` declarations without an explicit ABI are deprecated1580 --> ../src/ffi.rs:246:201581 |1582246 | pub unsafe extern fn $align_name(b: BlockHandle,1583 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1584...1585335 | / gen_functions!(1586336 | | block_new_aa_xdrop,1587337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1588338 | | block_align_aa_xdrop,1589... |1590352 | | AAMatrix, AAProfile, false, true1591353 | | );1592 | |_- in this macro invocation1593 |1594 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15951596warning: `extern` declarations without an explicit ABI are deprecated1597 --> ../src/ffi.rs:259:201598 |1599259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1600 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1601...1602335 | / gen_functions!(1603336 | | block_new_aa_xdrop,1604337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1605338 | | block_align_aa_xdrop,1606... |1607352 | | AAMatrix, AAProfile, false, true1608353 | | );1609 | |_- in this macro invocation1610 |1611 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16121613warning: `extern` declarations without an explicit ABI are deprecated1614 --> ../src/ffi.rs:270:201615 |1616270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1617 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1618...1619335 | / gen_functions!(1620336 | | block_new_aa_xdrop,1621337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1622338 | | block_align_aa_xdrop,1623... |1624352 | | AAMatrix, AAProfile, false, true1625353 | | );1626 | |_- in this macro invocation1627 |1628 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16291630warning: `extern` declarations without an explicit ABI are deprecated1631 --> ../src/ffi.rs:288:201632 |1633288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1634 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1635...1636335 | / gen_functions!(1637336 | | block_new_aa_xdrop,1638337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1639338 | | block_align_aa_xdrop,1640... |1641352 | | AAMatrix, AAProfile, false, true1642353 | | );1643 | |_- in this macro invocation1644 |1645 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16461647warning: `extern` declarations without an explicit ABI are deprecated1648 --> ../src/ffi.rs:295:201649 |1650295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1651 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1652...1653335 | / gen_functions!(1654336 | | block_new_aa_xdrop,1655337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1656338 | | block_align_aa_xdrop,1657... |1658352 | | AAMatrix, AAProfile, false, true1659353 | | );1660 | |_- in this macro invocation1661 |1662 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16631664warning: `extern` declarations without an explicit ABI are deprecated1665 --> ../src/ffi.rs:302:201666 |1667302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1668 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1669...1670335 | / gen_functions!(1671336 | | block_new_aa_xdrop,1672337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1673338 | | block_align_aa_xdrop,1674... |1675352 | | AAMatrix, AAProfile, false, true1676353 | | );1677 | |_- in this macro invocation1678 |1679 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16801681warning: `extern` declarations without an explicit ABI are deprecated1682 --> ../src/ffi.rs:309:201683 |1684309 | pub unsafe extern fn $free_name(b: BlockHandle) {1685 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1686...1687335 | / gen_functions!(1688336 | | block_new_aa_xdrop,1689337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1690338 | | block_align_aa_xdrop,1691... |1692352 | | AAMatrix, AAProfile, false, true1693353 | | );1694 | |_- in this macro invocation1695 |1696 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16971698warning: `extern` declarations without an explicit ABI are deprecated1699 --> ../src/ffi.rs:237:201700 |1701237 | pub unsafe extern fn $new_name(query_len: usize,1702 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1703...1704355 | / gen_functions!(1705356 | | block_new_aa_trace,1706357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1707358 | | block_align_aa_trace,1708... |1709372 | | AAMatrix, AAProfile, true, false1710373 | | );1711 | |_- in this macro invocation1712 |1713 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17141715warning: `extern` declarations without an explicit ABI are deprecated1716 --> ../src/ffi.rs:246:201717 |1718246 | pub unsafe extern fn $align_name(b: BlockHandle,1719 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1720...1721355 | / gen_functions!(1722356 | | block_new_aa_trace,1723357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1724358 | | block_align_aa_trace,1725... |1726372 | | AAMatrix, AAProfile, true, false1727373 | | );1728 | |_- in this macro invocation1729 |1730 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17311732warning: `extern` declarations without an explicit ABI are deprecated1733 --> ../src/ffi.rs:259:201734 |1735259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1736 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1737...1738355 | / gen_functions!(1739356 | | block_new_aa_trace,1740357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1741358 | | block_align_aa_trace,1742... |1743372 | | AAMatrix, AAProfile, true, false1744373 | | );1745 | |_- in this macro invocation1746 |1747 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17481749warning: `extern` declarations without an explicit ABI are deprecated1750 --> ../src/ffi.rs:270:201751 |1752270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1753 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1754...1755355 | / gen_functions!(1756356 | | block_new_aa_trace,1757357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1758358 | | block_align_aa_trace,1759... |1760372 | | AAMatrix, AAProfile, true, false1761373 | | );1762 | |_- in this macro invocation1763 |1764 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17651766warning: `extern` declarations without an explicit ABI are deprecated1767 --> ../src/ffi.rs:288:201768 |1769288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1770 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1771...1772355 | / gen_functions!(1773356 | | block_new_aa_trace,1774357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1775358 | | block_align_aa_trace,1776... |1777372 | | AAMatrix, AAProfile, true, false1778373 | | );1779 | |_- in this macro invocation1780 |1781 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17821783warning: `extern` declarations without an explicit ABI are deprecated1784 --> ../src/ffi.rs:295:201785 |1786295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1787 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1788...1789355 | / gen_functions!(1790356 | | block_new_aa_trace,1791357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1792358 | | block_align_aa_trace,1793... |1794372 | | AAMatrix, AAProfile, true, false1795373 | | );1796 | |_- in this macro invocation1797 |1798 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17991800warning: `extern` declarations without an explicit ABI are deprecated1801 --> ../src/ffi.rs:302:201802 |1803302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1804 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1805...1806355 | / gen_functions!(1807356 | | block_new_aa_trace,1808357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1809358 | | block_align_aa_trace,1810... |1811372 | | AAMatrix, AAProfile, true, false1812373 | | );1813 | |_- in this macro invocation1814 |1815 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18161817warning: `extern` declarations without an explicit ABI are deprecated1818 --> ../src/ffi.rs:309:201819 |1820309 | pub unsafe extern fn $free_name(b: BlockHandle) {1821 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1822...1823355 | / gen_functions!(1824356 | | block_new_aa_trace,1825357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1826358 | | block_align_aa_trace,1827... |1828372 | | AAMatrix, AAProfile, true, false1829373 | | );1830 | |_- in this macro invocation1831 |1832 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18331834warning: `extern` declarations without an explicit ABI are deprecated1835 --> ../src/ffi.rs:237:201836 |1837237 | pub unsafe extern fn $new_name(query_len: usize,1838 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1839...1840375 | / gen_functions!(1841376 | | block_new_aa_trace_xdrop,1842377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1843378 | | block_align_aa_trace_xdrop,1844... |1845392 | | AAMatrix, AAProfile, true, true1846393 | | );1847 | |_- in this macro invocation1848 |1849 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18501851warning: `extern` declarations without an explicit ABI are deprecated1852 --> ../src/ffi.rs:246:201853 |1854246 | pub unsafe extern fn $align_name(b: BlockHandle,1855 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1856...1857375 | / gen_functions!(1858376 | | block_new_aa_trace_xdrop,1859377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1860378 | | block_align_aa_trace_xdrop,1861... |1862392 | | AAMatrix, AAProfile, true, true1863393 | | );1864 | |_- in this macro invocation1865 |1866 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18671868warning: `extern` declarations without an explicit ABI are deprecated1869 --> ../src/ffi.rs:259:201870 |1871259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1872 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1873...1874375 | / gen_functions!(1875376 | | block_new_aa_trace_xdrop,1876377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1877378 | | block_align_aa_trace_xdrop,1878... |1879392 | | AAMatrix, AAProfile, true, true1880393 | | );1881 | |_- in this macro invocation1882 |1883 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18841885warning: `extern` declarations without an explicit ABI are deprecated1886 --> ../src/ffi.rs:270:201887 |1888270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1889 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1890...1891375 | / gen_functions!(1892376 | | block_new_aa_trace_xdrop,1893377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1894378 | | block_align_aa_trace_xdrop,1895... |1896392 | | AAMatrix, AAProfile, true, true1897393 | | );1898 | |_- in this macro invocation1899 |1900 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19011902warning: `extern` declarations without an explicit ABI are deprecated1903 --> ../src/ffi.rs:288:201904 |1905288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1906 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1907...1908375 | / gen_functions!(1909376 | | block_new_aa_trace_xdrop,1910377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1911378 | | block_align_aa_trace_xdrop,1912... |1913392 | | AAMatrix, AAProfile, true, true1914393 | | );1915 | |_- in this macro invocation1916 |1917 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19181919warning: `extern` declarations without an explicit ABI are deprecated1920 --> ../src/ffi.rs:295:201921 |1922295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1923 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1924...1925375 | / gen_functions!(1926376 | | block_new_aa_trace_xdrop,1927377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1928378 | | block_align_aa_trace_xdrop,1929... |1930392 | | AAMatrix, AAProfile, true, true1931393 | | );1932 | |_- in this macro invocation1933 |1934 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19351936warning: `extern` declarations without an explicit ABI are deprecated1937 --> ../src/ffi.rs:302:201938 |1939302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1940 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1941...1942375 | / gen_functions!(1943376 | | block_new_aa_trace_xdrop,1944377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1945378 | | block_align_aa_trace_xdrop,1946... |1947392 | | AAMatrix, AAProfile, true, true1948393 | | );1949 | |_- in this macro invocation1950 |1951 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19521953warning: `extern` declarations without an explicit ABI are deprecated1954 --> ../src/ffi.rs:309:201955 |1956309 | pub unsafe extern fn $free_name(b: BlockHandle) {1957 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1958...1959375 | / gen_functions!(1960376 | | block_new_aa_trace_xdrop,1961377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1962378 | | block_align_aa_trace_xdrop,1963... |1964392 | | AAMatrix, AAProfile, true, true1965393 | | );1966 | |_- in this macro invocation1967 |1968 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19691970warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions)1971 Finished `release` profile [optimized] target(s) in 0.00s1972[ 37%] Built target gemmiwrapper1973[ 40%] Built target ggml-cpu1974Copying byproducts `libblock_aligner_c.a` to /build/source/build1975[ 40%] Built target ggml1976[ 40%] Built target _cargo-build_block_aligner_c1977[ 40%] Built target cargo-build_block_aligner_c1978[ 42%] Built target llama1979[ 43%] Built target prostt51980[ 89%] Built target mmseqs-framework1981[ 89%] Built target pulchra1982[ 89%] Built target 3di1983[ 89%] Built target kerasify1984[ 90%] Built target tmalign1985[100%] Built target foldseek-framework1986[100%] Built target foldseek1987Install the project...1988-- Install configuration: "Release"1989-- Installing: /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/bin/foldseekfixupPhase
1990shrinking RPATHs of ELF executables and libraries in /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd331991shrinking /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/bin/foldseek1992checking for references to /build/ in /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33...1993patching script interpreter paths in /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd331994stripping (with command strip and flags -S -p) in /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/bin