Using checkPhaseThreadLimitHook Running phase: unpackPhase unpacking source archive /nix/store/1g2298s2bz7py868im4h43k0v913xzgd-source source root is source Running phase: patchPhase patching script interpreter paths in lib/mmseqs/cmake/xxdi.pl lib/mmseqs/cmake/xxdi.pl: interpreter directive changed from "#!/usr/bin/env perl" to "/nix/store/kfqbfq23lafkrbhxxblzf65baqz5p1ia-perl-5.42.3/bin/perl" patching script interpreter paths in cmake/xxdi.pl find: 'cmake/xxdi.pl': No such file or directory Running phase: updateAutotoolsGnuConfigScriptsPhase Running phase: configurePhase cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/share/doc/foldseek -DCMAKE_INSTALL_INFODIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/share/man -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/include -DCMAKE_INSTALL_SBINDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/lib -DCMAKE_STRIP=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/strip -DCMAKE_RANLIB=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/ranlib -DCMAKE_AR=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/ar -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_INSTALL_PREFIX=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 -DHAVE_AVX2=1 -- The C compiler identification is GNU 15.3.0 -- The CXX compiler identification is GNU 15.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at lib/mmseqs/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Source Directory: /build/source/lib/mmseqs -- Project Directory: /build/source/lib/mmseqs -- Compiler is GNU -- ZSTD VERSION 1.3.8 CMake Deprecation Warning at lib/mmseqs/lib/tinyexpr/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- xxd not found, using xxdi.pl instead -- ShellCheck disabled -- Performing Test HAVE_POSIX_FADVISE -- Performing Test HAVE_POSIX_FADVISE - Success -- Performing Test HAVE_POSIX_MADVISE -- Performing Test HAVE_POSIX_MADVISE - Success -- Performing Test ATOMIC_NATIVE -- Performing Test ATOMIC_NATIVE - Failed -- Performing Test ATOMIC_WITH_LIB -- Performing Test ATOMIC_WITH_LIB - Success -- Found Atomic: -latomic -- IPS4O sorting works -- Found ZLIB -- Performing Test HAVE_ZLIB_CHECK -- Performing Test HAVE_ZLIB_CHECK - Success -- ZLIB works -- Found BZLIB -- Performing Test HAVE_BZLIB_CHECK -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP CMake Deprecation Warning at lib/foldcomp/CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- xxd not found, using xxdi.pl instead -- ShellCheck not found -- Rust Target: x86_64-unknown-linux-gnu -- Determining required link libraries for target x86_64-unknown-linux-gnu -- Required static libs for target x86_64-unknown-linux-gnu: gcc_s;util;rt;pthread;m;dl;c -- Found Rust: /nix/store/yaa1sq5g4jar7rvlspy7kk2wd98nj6qh-rustc-wrapper-1.97.1/bin/rustc (found version "1.97.1") -- Using Corrosion as a subdirectory -- Rust Feature: simd_avx2 -- Could NOT find Git (missing: GIT_EXECUTABLE) CMake Warning at lib/prostt5/cmake/build-info.cmake:14 (message): Git not found. Build info will not be accurate. Call Stack (most recent call first): lib/prostt5/CMakeLists.txt:82 (include) -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Warning: ccache not found - consider installing it for faster compilation or disable this warning with GGML_CCACHE=OFF -- CMAKE_SYSTEM_PROCESSOR: x86_64 -- Including CPU backend -- x86 detected -- Adding CPU backend variant ggml-cpu: -msse2;-msse3;-mssse3;-msse4.1;-mf16c;-mfma;-mavx;-mavx2 GGML_SSE41;GGML_F16C;GGML_FMA;GGML_AVX;GGML_AVX2 -- Configuring done (3.2s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/source/build cmake: enabled parallel building cmake: enabled parallel installing Running phase: buildPhase build flags: -j48 SHELL=/nix/store/9ipfvwnqp1q8ijnmi5sxvlx9r8w34lw3-bash-5.3p15/bin/bash [ 0%] Built target 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Generating ../generated/blastp.sh.h [ 19%] Generating ../generated/easyrbh.sh.h [ 20%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o [ 20%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_double_fast.c.o [ 21%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_lazy.c.o [ 22%] Generating ../generated/result2structprofile.sh.h [ 23%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-threading.cpp.o Compiling block_aligner_c v0.4.0 (/build/source/lib/block-aligner/c) [ 23%] Generating ../generated/blastpgp.sh.h [ 24%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/utility.cpp.o [ 24%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o [ 24%] Built target microtar [ 24%] Generating ../generated/map.sh.h [ 24%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o [ 25%] Generating ../generated/createstructsubdb.sh.h [ 26%] Generating ../generated/rbh.sh.h [ 26%] Generating ../generated/multimersearch.sh.h [ 26%] Generating ../generated/easymultimersearch.sh.h [ 27%] Generating ../generated/linclust.sh.h [ 27%] Generating ../generated/multimercluster.sh.h [ 27%] Generating ../generated/clustering.sh.h [ 27%] Generating ../generated/cascaded_clustering.sh.h [ 27%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_opt.c.o [ 27%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-quants.c.o [ 27%] Generating ../generated/easymultimercluster.sh.h warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:32:12 | 32 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` | = note: `#[warn(missing_abi)]` on by default warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:39:12 | 39 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:46:12 | 46 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:61:12 | 61 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:68:12 | 68 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:76:12 | 76 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:86:12 | 86 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:97:12 | 97 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:108:12 | 108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:119:12 | 119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:126:12 | 126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:133:12 | 133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:140:12 | 140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:149:12 | 149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:156:12 | 156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:163:12 | 163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:170:12 | 170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:179:12 | 179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:186:12 | 186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:194:12 | 194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:203:12 | 203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:210:12 | 210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:218:12 | 218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:237:20 | 237 | pub unsafe extern fn $new_name(query_len: usize, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:246:20 | 246 | pub unsafe extern fn $align_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:259:20 | 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:270:20 | 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:288:20 | 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:295:20 | 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:302:20 | 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:309:20 | 309 | pub unsafe extern fn $free_name(b: BlockHandle) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:237:20 | 237 | pub unsafe extern fn $new_name(query_len: usize, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:246:20 | 246 | pub unsafe extern fn $align_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:259:20 | 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:270:20 | 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:288:20 | 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:295:20 | 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:302:20 | 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:309:20 | 309 | pub unsafe extern fn $free_name(b: BlockHandle) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:237:20 | 237 | pub unsafe extern fn $new_name(query_len: usize, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:246:20 | 246 | pub unsafe extern fn $align_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:259:20 | 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:270:20 | 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:288:20 | 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) [ 27%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_ldm.c.o [ 28%] Generating ../generated/update_clustering.sh.h warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:295:20 | 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:302:20 | 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:309:20 | 309 | pub unsafe extern fn $free_name(b: BlockHandle) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:237:20 | 237 | pub unsafe extern fn $new_name(query_len: usize, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:246:20 | 246 | pub unsafe extern fn $align_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:259:20 | 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:270:20 | 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:288:20 | 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:295:20 | 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:302:20 | 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:309:20 | 309 | pub unsafe extern fn $free_name(b: BlockHandle) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) [ 29%] Generating ../generated/searchtargetprofile.sh.h [ 29%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/huf_decompress.c.o [ 29%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress.c.o /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base': /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 373 | ret->bound = s->bound; | ^~ In function 'new_expr', inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:372:19: /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc' 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ In function 'new_expr', inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19: /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 93 | ret->type = type; | ~~~~~~~~~~^~~~~~ /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc' 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base': /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 367 | ret->value = s->value; | ^~ In function 'new_expr', inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19: /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc' 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base': /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 446 | ret->value = NAN; | ^~ In function 'new_expr', inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:444:19: /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc' 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ [ 30%] Generating ../generated/createindex.sh.h [ 30%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress_block.c.o [ 30%] Generating ../generated/createtaxdb.sh.h [ 30%] Generating ../generated/translated_search.sh.h [ 30%] Generating ../generated/taxpercontig.sh.h [ 30%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_ddict.c.o [ 31%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/cover.c.o [ 31%] Generating ../generated/multihitdb.sh.h [ 32%] Generating ../generated/multihitsearch.sh.h [ 33%] Generating ../generated/enrich.sh.h [ 33%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/fastcover.c.o [ 33%] Generating ../generated/blastn.sh.h [ 33%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/divsufsort.c.o [ 33%] Generating ../generated/searchslicedtargetprofile.sh.h [ 33%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/zdict.c.o [ 34%] Generating ../generated/taxonomy.sh.h [ 35%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_common.c.o [ 35%] Generating ../generated/linsearch.sh.h [ 35%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_compress.c.o [ 35%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_decompress.c.o [ 35%] Generating ../generated/databases.sh.h [ 35%] Generating ../generated/nucleotide_clustering.sh.h [ 35%] Generating ../generated/iterativepp.sh.h [ 35%] Generating ../generated/tsv2exprofiledb.sh.h [ 35%] Linking C static library libtinyexpr.a [ 35%] Built target tinyexpr [ 35%] Built target local-generated [ 36%] Linking CXX static library libtantan.a [ 36%] Built target tantan [ 36%] Built target ksw2 [ 36%] Built target alp warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions) Finished `release` profile [optimized] target(s) in 5.01s Copying byproducts `libblock_aligner_c.a` to /build/source/build [ 36%] Built target _cargo-build_block_aligner_c [ 36%] Built target cargo-build_block_aligner_c [ 36%] Built target generated [ 36%] Linking CXX static library libggml-base.a [ 36%] Built target ggml-base [ 36%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu.c.o [ 36%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-aarch64.cpp.o [ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu.cpp.o [ 37%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-quants.c.o [ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-hbm.cpp.o [ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-traits.cpp.o [ 38%] Building CXX object 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o [ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o [ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o [ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o [ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o [ 64%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o [ 64%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o [ 64%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o [ 64%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o [ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o [ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o [ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o [ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o [ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o [ 67%] Linking CXX static library libggml-cpu.a [ 67%] Built target ggml-cpu [ 67%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml.dir/ggml-backend-reg.cpp.o [ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o [ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/gpuserver.cpp.o [ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o [ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o [ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o [ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o [ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp: In function 'std::wstring utf8_to_utf16(const std::string&)': /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:76:10: warning: 'template class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations] 76 | std::wstring_convert> converter; | ^~~~~~~~~~~~~~~ In file included from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/locale:47, from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/fs_path.h:36, from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/filesystem:54, from /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:7: /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here 262 | class _GLIBCXX17_DEPRECATED wstring_convert | ^~~~~~~~~~~~~~~ /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp: In function 'std::string utf16_to_utf8(const std::wstring&)': /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:81:10: warning: 'template class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations] 81 | std::wstring_convert> converter; | ^~~~~~~~~~~~~~~ /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here 262 | class _GLIBCXX17_DEPRECATED wstring_convert | ^~~~~~~~~~~~~~~ [ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o [ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o [ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o [ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o [ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o [ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o [ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o [ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o [ 71%] Linking CXX static library libggml.a [ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o [ 71%] Built target ggml [ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o [ 72%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama.cpp.o [ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o [ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o [ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o [ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o [ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o [ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o [ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o [ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o [ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o [ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o [ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o [ 75%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-vocab.cpp.o [ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o [ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o [ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o [ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o [ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o [ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o [ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o [ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o [ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o [ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o [ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o [ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o [ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o [ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o [ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o [ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o [ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o /build/source/lib/mmseqs/src/util/result2flat.cpp: In function 'int result2flat(int, const char**, const Command&)': /build/source/lib/mmseqs/src/util/result2flat.cpp:65:37: warning: ignoring return value of 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator; size_type = long unsigned int]', declared with attribute 'nodiscard' [-Wunused-result] 65 | dbKeyBuffer.size(); | ~~~~~~~~~~~~~~~~^~ In file included from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/string:56, from /build/source/lib/mmseqs/src/commons/Parameters.h:7, from /build/source/lib/mmseqs/src/util/result2flat.cpp:2: /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/basic_string.h:1163:7: note: declared here 1163 | size() const _GLIBCXX_NOEXCEPT | ^~~~ [ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o [ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o [ 80%] Building CXX object 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src/CMakeFiles/foldseek-framework.dir/workflow/EasyMultimerSearch.cpp.o [100%] Linking CXX static library libfoldseek-framework.a [100%] Built target foldseek-framework [100%] Building CXX object src/CMakeFiles/foldseek.dir/foldseek.cpp.o [100%] Linking CXX executable foldseek [100%] Built target foldseek buildPhase completed in 1 minutes 26 seconds Running phase: installPhase install flags: -j48 SHELL=/nix/store/9ipfvwnqp1q8ijnmi5sxvlx9r8w34lw3-bash-5.3p15/bin/bash install [ 1%] Built target version [ 3%] Built target cargo-prebuild_block_aligner_c [ 6%] Built target local-generated [ 7%] Built target microtar [ 18%] Built target generated [ 19%] Built target tinyexpr [ 19%] Built target tantan [ 20%] Built target ksw2 [ 27%] Built target libzstd_static [ 29%] Built target ggml-base [ 32%] Built target foldcomp [ 36%] Built target alp warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:32:12 | 32 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` | = note: `#[warn(missing_abi)]` on by default warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:39:12 | 39 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:46:12 | 46 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:61:12 | 61 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:68:12 | 68 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:76:12 | 76 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:86:12 | 86 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:97:12 | 97 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:108:12 | 108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:119:12 | 119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:126:12 | 126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:133:12 | 133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:140:12 | 140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:149:12 | 149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:156:12 | 156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:163:12 | 163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:170:12 | 170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:179:12 | 179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:186:12 | 186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:194:12 | 194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:203:12 | 203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:210:12 | 210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:218:12 | 218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:237:20 | 237 | pub unsafe extern fn $new_name(query_len: usize, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:246:20 | 246 | pub unsafe extern fn $align_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:259:20 | 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:270:20 | 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:288:20 | 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:295:20 | 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:302:20 | 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:309:20 | 309 | pub unsafe extern fn $free_name(b: BlockHandle) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 315 | / gen_functions!( 316 | | block_new_aa, 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", 318 | | block_align_aa, ... | 332 | | AAMatrix, AAProfile, false, false 333 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:237:20 | 237 | pub unsafe extern fn $new_name(query_len: usize, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:246:20 | 246 | pub unsafe extern fn $align_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:259:20 | 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:270:20 | 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:288:20 | 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:295:20 | 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:302:20 | 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:309:20 | 309 | pub unsafe extern fn $free_name(b: BlockHandle) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 335 | / gen_functions!( 336 | | block_new_aa_xdrop, 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", 338 | | block_align_aa_xdrop, ... | 352 | | AAMatrix, AAProfile, false, true 353 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:237:20 | 237 | pub unsafe extern fn $new_name(query_len: usize, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:246:20 | 246 | pub unsafe extern fn $align_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:259:20 | 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:270:20 | 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:288:20 | 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:295:20 | 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:302:20 | 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:309:20 | 309 | pub unsafe extern fn $free_name(b: BlockHandle) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 355 | / gen_functions!( 356 | | block_new_aa_trace, 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", 358 | | block_align_aa_trace, ... | 372 | | AAMatrix, AAProfile, true, false 373 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:237:20 | 237 | pub unsafe extern fn $new_name(query_len: usize, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:246:20 | 246 | pub unsafe extern fn $align_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:259:20 | 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:270:20 | 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:288:20 | 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:295:20 | 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:302:20 | 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `extern` declarations without an explicit ABI are deprecated --> ../src/ffi.rs:309:20 | 309 | pub unsafe extern fn $free_name(b: BlockHandle) { | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` ... 375 | / gen_functions!( 376 | | block_new_aa_trace_xdrop, 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", 378 | | block_align_aa_trace_xdrop, ... | 392 | | AAMatrix, AAProfile, true, true 393 | | ); | |_- in this macro invocation | = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions) Finished `release` profile [optimized] target(s) in 0.00s [ 37%] Built target gemmiwrapper [ 40%] Built target ggml-cpu Copying byproducts `libblock_aligner_c.a` to /build/source/build [ 40%] Built target ggml [ 40%] Built target _cargo-build_block_aligner_c [ 40%] Built target cargo-build_block_aligner_c [ 42%] Built target llama [ 43%] Built target prostt5 [ 89%] Built target mmseqs-framework [ 89%] Built target pulchra [ 89%] Built target 3di [ 89%] Built target kerasify [ 90%] Built target tmalign [100%] Built target foldseek-framework [100%] Built target foldseek Install the project... -- Install configuration: "Release" -- Installing: /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/bin/foldseek Running phase: fixupPhase shrinking RPATHs of ELF executables and libraries in /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33 shrinking /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/bin/foldseek checking for references to /build/ in /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33... patching script interpreter paths in /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33 stripping (with command strip and flags -S -p) in /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/bin