this derivation will be built:
  /nix/store/0gw0fys8fx0kqmh40my8lggaxx8z6vpq-biorefs-cli-0.1.0.drv
these 24 paths will be fetched (18.0 MiB download, 75.6 MiB unpacked):
  /nix/store/icp6fgjg12fks3i0wfl0bjfjgvd03y9c-ensure-newer-sources-hook
  /nix/store/cgknvydg87rr6zg9031vqd9jdhf31fai-pypa-build-hook.sh
  /nix/store/vcyvxgzq8xh633sx9gghzjh0fkcl6x8b-pypa-install-hook
  /nix/store/jamc5mdgkza901ybnkmq007rh7wsl7qy-pytest-check-hook
  /nix/store/w6dircc3f4f745my3gq95hdbkk7bvr0h-python-catch-conflicts-hook
  /nix/store/35rk2x7hsckqsn42407rgjjaladlrcrh-python-imports-check-hook.sh
  /nix/store/j1na7wnx9wxkkv9kw9fdhrddzn3apvqp-python-namespaces-hook.sh
  /nix/store/iwc9mdnh2ws5j0l7iy7bqbff6drlvssq-python-output-dist-hook
  /nix/store/k7ycyrwznqz0amqcy78yi1gabhz9xcnz-python-remove-bin-bytecode-hook
  /nix/store/jd0nnjczrfnb0kn6p42lqm26dfiylvyp-python-remove-tests-dir-hook
  /nix/store/vwpxymga69qm3h5yd920p8iy4xkzpbzb-python-runtime-deps-check-hook.sh
  /nix/store/lqvxqpqa7yw0qcl5vf7i2hkh00zls5m0-python3.14-build-1.5.1
  /nix/store/62rg26wc6jkbm2r0mf0mj5qw1pga8gj2-python3.14-editables-0.6
  /nix/store/nxz9hnjkkcchrkbqw7gqsirga03rzzqi-python3.14-hatchling-1.31.0
  /nix/store/kh57jfid292x08slhx8hq4yva2x4idlc-python3.14-iniconfig-2.3.0
  /nix/store/4cahraqqkmfws6i3l5kwpayn0i0i12s5-python3.14-installer-1.0.1
  /nix/store/7nr7922ihsgzmyxxqjm4s233f6dglmzx-python3.14-mypy-2.1.0
  /nix/store/bp2232ryaf5mwwivn77s7qcfzgz1fafb-python3.14-pluggy-1.6.0
  /nix/store/khhd398h6fy0alc7fjfyqssd1bz58xr1-python3.14-pyproject-hooks-1.2.0
  /nix/store/fwqp3f54vqakq82lfrpiw908xi1iln0w-python3.14-pytest-9.1.1
  /nix/store/l96ki6799kj5ji6bil33vic8pw9xz2a5-python3.14-ruff-0.16.8
  /nix/store/fd0wgn0ppayig3f60cxpc98xp7jbsdyf-python3.14-trove-classifiers-2026.6.1.19
  /nix/store/byxqz565bpx22h98v1qm1pl6x3ny72w1-python3.14-wheel-0.47.0
  /nix/store/bnm3ppcxy786lcfq6lqni25mi9svpj32-wrap-python-hook
building '/nix/store/0gw0fys8fx0kqmh40my8lggaxx8z6vpq-biorefs-cli-0.1.0.drv'
biorefs-cli-0.1.0> Sourcing python-remove-tests-dir-hook
biorefs-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh
biorefs-cli-0.1.0> Sourcing python-remove-bin-bytecode-hook.sh
biorefs-cli-0.1.0> Sourcing pypa-build-hook
biorefs-cli-0.1.0> Using pypaBuildPhase
biorefs-cli-0.1.0> Sourcing python-runtime-deps-check-hook
biorefs-cli-0.1.0> Using pythonRuntimeDepsCheckHook
biorefs-cli-0.1.0> Sourcing pypa-install-hook
biorefs-cli-0.1.0> Using pypaInstallPhase
biorefs-cli-0.1.0> Sourcing python-imports-check-hook.sh
biorefs-cli-0.1.0> Using pythonImportsCheckPhase
biorefs-cli-0.1.0> Sourcing python-namespaces-hook
biorefs-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh
biorefs-cli-0.1.0> Sourcing pytest-check-hook
biorefs-cli-0.1.0> Running phase: unpackPhase
biorefs-cli-0.1.0> unpacking source archive /nix/store/dx3ndhmyv4raa13jx2ajz1z6jm3w7ksb-biorefs-cli
biorefs-cli-0.1.0> source root is biorefs-cli
biorefs-cli-0.1.0> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "biorefs-cli/tests/test_uniprot.py"
biorefs-cli-0.1.0> Running phase: patchPhase
biorefs-cli-0.1.0> Running phase: updateAutotoolsGnuConfigScriptsPhase
biorefs-cli-0.1.0> Running phase: configurePhase
biorefs-cli-0.1.0> no configure script, doing nothing
biorefs-cli-0.1.0> Running phase: buildPhase
biorefs-cli-0.1.0> Executing pypaBuildPhase
biorefs-cli-0.1.0> Creating a wheel...
biorefs-cli-0.1.0> pypa build flags: --no-isolation --outdir dist/ --wheel
biorefs-cli-0.1.0> * Getting build dependencies for wheel...
biorefs-cli-0.1.0> * Building wheel...
biorefs-cli-0.1.0> Successfully built biorefs_cli-0.1.0-py3-none-any.whl
biorefs-cli-0.1.0> Finished creating a wheel...
biorefs-cli-0.1.0> Finished executing pypaBuildPhase
biorefs-cli-0.1.0> Running phase: pythonRuntimeDepsCheckHook
biorefs-cli-0.1.0> Executing pythonRuntimeDepsCheck
biorefs-cli-0.1.0> Checking runtime dependencies for biorefs_cli-0.1.0-py3-none-any.whl
biorefs-cli-0.1.0> Finished executing pythonRuntimeDepsCheck
biorefs-cli-0.1.0> Running phase: installPhase
biorefs-cli-0.1.0> Executing pypaInstallPhase
biorefs-cli-0.1.0> Successfully installed biorefs_cli-0.1.0-py3-none-any.whl
biorefs-cli-0.1.0> Finished executing pypaInstallPhase
biorefs-cli-0.1.0> Running phase: pythonOutputDistPhase
biorefs-cli-0.1.0> Executing pythonOutputDistPhase
biorefs-cli-0.1.0> Finished executing pythonOutputDistPhase
biorefs-cli-0.1.0> Running phase: fixupPhase
biorefs-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/pfxlk2snbazx6wrwrlvfg39vn735pzg9-biorefs-cli-0.1.0
biorefs-cli-0.1.0> checking for references to /build/ in /nix/store/pfxlk2snbazx6wrwrlvfg39vn735pzg9-biorefs-cli-0.1.0...
biorefs-cli-0.1.0> patching script interpreter paths in /nix/store/pfxlk2snbazx6wrwrlvfg39vn735pzg9-biorefs-cli-0.1.0
biorefs-cli-0.1.0> stripping (with command strip and flags -S -p) in /nix/store/pfxlk2snbazx6wrwrlvfg39vn735pzg9-biorefs-cli-0.1.0/lib /nix/store/pfxlk2snbazx6wrwrlvfg39vn735pzg9-biorefs-cli-0.1.0/bin
biorefs-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/4vx95mlb129nilm6rvw03c882mlr2jms-biorefs-cli-0.1.0-dist
biorefs-cli-0.1.0> checking for references to /build/ in /nix/store/4vx95mlb129nilm6rvw03c882mlr2jms-biorefs-cli-0.1.0-dist...
biorefs-cli-0.1.0> patching script interpreter paths in /nix/store/4vx95mlb129nilm6rvw03c882mlr2jms-biorefs-cli-0.1.0-dist
biorefs-cli-0.1.0> Rewriting #!/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/bin/python3.14 to #!/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7
biorefs-cli-0.1.0> wrapping `/nix/store/pfxlk2snbazx6wrwrlvfg39vn735pzg9-biorefs-cli-0.1.0/bin/biorefs-cli'...
biorefs-cli-0.1.0> Executing pythonRemoveTestsDir
biorefs-cli-0.1.0> Finished executing pythonRemoveTestsDir
biorefs-cli-0.1.0> Running phase: installCheckPhase
biorefs-cli-0.1.0> 47 files already formatted
biorefs-cli-0.1.0> All checks passed!
biorefs-cli-0.1.0> Success: no issues found in 47 source files
biorefs-cli-0.1.0> ============================= test session starts ==============================
biorefs-cli-0.1.0> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0
biorefs-cli-0.1.0> rootdir: /build/biorefs-cli
biorefs-cli-0.1.0> configfile: pyproject.toml
biorefs-cli-0.1.0> collected 185 items                                                            
biorefs-cli-0.1.0> 
biorefs-cli-0.1.0> tests/test_api_specs.py ..                                               [  1%]
biorefs-cli-0.1.0> tests/test_assay.py .........                                            [  5%]
biorefs-cli-0.1.0> tests/test_compound.py .......                                           [  9%]
biorefs-cli-0.1.0> tests/test_core_helpers.py .......                                       [ 13%]
biorefs-cli-0.1.0> tests/test_gene.py ..........                                            [ 18%]
biorefs-cli-0.1.0> tests/test_http_post.py ........                                         [ 23%]
biorefs-cli-0.1.0> tests/test_ncbi_command.py ..........                                    [ 28%]
biorefs-cli-0.1.0> tests/test_ncbi_extra.py ...                                             [ 30%]
biorefs-cli-0.1.0> tests/test_nucleotide.py ..........                                      [ 35%]
biorefs-cli-0.1.0> tests/test_openalex.py .........                                         [ 40%]
biorefs-cli-0.1.0> tests/test_paper.py ......                                               [ 43%]
biorefs-cli-0.1.0> tests/test_paper_extra.py ........                                       [ 48%]
biorefs-cli-0.1.0> tests/test_protein.py .............                                      [ 55%]
biorefs-cli-0.1.0> tests/test_rate_limit.py .........                                       [ 60%]
biorefs-cli-0.1.0> tests/test_rcsb_graphql.py ....                                          [ 62%]
biorefs-cli-0.1.0> tests/test_render_helpers.py ......                                      [ 65%]
biorefs-cli-0.1.0> tests/test_scaffold.py .....                                             [ 68%]
biorefs-cli-0.1.0> tests/test_setup.py .......                                              [ 71%]
biorefs-cli-0.1.0> tests/test_structure_fetch.py ...........                                [ 77%]
biorefs-cli-0.1.0> tests/test_structure_info.py .....                                       [ 80%]
biorefs-cli-0.1.0> tests/test_structure_render.py .......                                   [ 84%]
biorefs-cli-0.1.0> tests/test_structure_search.py ............                              [ 90%]
biorefs-cli-0.1.0> tests/test_uniprot.py .................                                  [100%]
biorefs-cli-0.1.0> 
biorefs-cli-0.1.0> ============================= 185 passed in 1.40s ==============================
biorefs-cli-0.1.0> Running phase: pythonCatchConflictsPhase
biorefs-cli-0.1.0> Running phase: pythonRemoveBinBytecodePhase
biorefs-cli-0.1.0> Running phase: pythonImportsCheckPhase
biorefs-cli-0.1.0> Executing pythonImportsCheckPhase
biorefs-cli-0.1.0> Running phase: pytestcachePhase
biorefs-cli-0.1.0> Running phase: pytestRemoveBytecodePhase

post-build step Route build to niks3: ok
Pushing mulatta/skillz to https://niks3.mulatta.io
time=2026-09-25T03:08:43.817+09:00 level=INFO msg="Uploading 1 paths to niks3.mulatta.io (23 already cached)"
time=2026-09-25T03:08:43.817+09:00 level=INFO msg="Uploading pfxlk2snbazx6wrwrlvfg39vn735pzg9-biorefs-cli-0.1.0 (2.3MB)"
time=2026-09-25T03:08:44.625+09:00 level=INFO msg="Uploading 1 narinfos"
time=2026-09-25T03:08:45.086+09:00 level=INFO msg="Upload complete. (1.344s)"