this derivation will be built:
  /nix/store/jdxzxkbwrcwxjyfdd9gfiaja9dy3idf5-biorefs-cli-0.1.0.drv
these 26 paths will be fetched (18.6 MiB download, 78.4 MiB unpacked):
  /nix/store/nnp532bi2mmpj9l0s3gj62vh2y6b3yw6-pypa-build-hook.sh
  /nix/store/0ii0ax3i8bybxp2kwmf8h44pmz9a2zws-pypa-install-hook
  /nix/store/08l53laxz5d5qqdcvvzjaky80d7jxc0r-pytest-check-hook
  /nix/store/9zwrscsk765px8s4b4gmj9lfb907x60i-python-catch-conflicts-hook
  /nix/store/75qqijj5k9bdsax8lndm7yh46mpadpga-python-imports-check-hook.sh
  /nix/store/ar3p57msfdgxranz3d509ggkmjzawz8b-python-namespaces-hook.sh
  /nix/store/lbvl786z58313ibmn4idsblr7bryjbmr-python-remove-tests-dir-hook
  /nix/store/dipmy5g58srkpvmhdg5773kmz1a1y12d-python-runtime-deps-check-hook.sh
  /nix/store/drlx58a28y5ns5xbl9ak3kd2la0yh6c3-python3.14-build-1.5.1
  /nix/store/q5wg97izpbyjvzrr3q4v51kcqp8k2blj-python3.14-editables-0.6
  /nix/store/f3npdvmyinir8fr9ywcz9f9601fxdhnm-python3.14-flit-core-3.12.0
  /nix/store/0f1q2jjdccwmijwr1g1wa7dmyljxnr4b-python3.14-hatchling-1.31.0
  /nix/store/4i0bzsw6zm130iivaafsxpdiwbyv5bak-python3.14-iniconfig-2.3.0
  /nix/store/zf12mi50gi1vksanqdd4jjha6m2276jr-python3.14-installer-1.0.1
  /nix/store/7nzljyz5qbyywmglgy5b824nria4hpm9-python3.14-librt-0.13.0
  /nix/store/18zyp522c811vn5jl4qcygf92nl4zp0b-python3.14-mypy-2.1.0
  /nix/store/r1bicgcqimbdxnxqc9jlmqn42nl576pp-python3.14-mypy-extensions-1.1.0
  /nix/store/6azp1hgh86lmnvqi6qvhg0i6bdnkh0l8-python3.14-packaging-26.2
  /nix/store/p678v5a08jklyvvryz8s6g5n3pf90zs7-python3.14-pathspec-1.1.1
  /nix/store/kbhbia91jrab9l3zz3y0xml1ml04py90-python3.14-pluggy-1.6.0
  /nix/store/hgn9k6lxfmg62q6jhk1yvw89pqjzhiwn-python3.14-pyproject-hooks-1.2.0
  /nix/store/6aamjai1shjzq2bmg67pfkimd3l9cj76-python3.14-pytest-9.1.1
  /nix/store/yvdp6a42zisajasxljy4xwhfd3lmiyp9-python3.14-ruff-0.16.4
  /nix/store/p0az8x1sh8mqd0xpmdkii8sj4z8zpbx0-python3.14-trove-classifiers-2026.6.1.19
  /nix/store/h4sqkavjbyc4l1kwb4x87j0v00js9d43-python3.14-wheel-0.47.0
  /nix/store/nqajilq02sqv48y2ym90vk9x9hc3spc6-wrap-python-hook
building '/nix/store/jdxzxkbwrcwxjyfdd9gfiaja9dy3idf5-biorefs-cli-0.1.0.drv'
biorefs-cli-0.1.0> Sourcing python-remove-tests-dir-hook
biorefs-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh
biorefs-cli-0.1.0> Sourcing python-remove-bin-bytecode-hook.sh
biorefs-cli-0.1.0> Sourcing pypa-build-hook
biorefs-cli-0.1.0> Using pypaBuildPhase
biorefs-cli-0.1.0> Sourcing python-runtime-deps-check-hook
biorefs-cli-0.1.0> Using pythonRuntimeDepsCheckHook
biorefs-cli-0.1.0> Sourcing pypa-install-hook
biorefs-cli-0.1.0> Using pypaInstallPhase
biorefs-cli-0.1.0> Sourcing python-imports-check-hook.sh
biorefs-cli-0.1.0> Using pythonImportsCheckPhase
biorefs-cli-0.1.0> Sourcing python-namespaces-hook
biorefs-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh
biorefs-cli-0.1.0> Sourcing pytest-check-hook
biorefs-cli-0.1.0> Running phase: unpackPhase
biorefs-cli-0.1.0> unpacking source archive /nix/store/dx3ndhmyv4raa13jx2ajz1z6jm3w7ksb-biorefs-cli
biorefs-cli-0.1.0> source root is biorefs-cli
biorefs-cli-0.1.0> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "biorefs-cli/tests/test_uniprot.py"
biorefs-cli-0.1.0> Running phase: patchPhase
biorefs-cli-0.1.0> Running phase: updateAutotoolsGnuConfigScriptsPhase
biorefs-cli-0.1.0> Running phase: configurePhase
biorefs-cli-0.1.0> no configure script, doing nothing
biorefs-cli-0.1.0> Running phase: buildPhase
biorefs-cli-0.1.0> Executing pypaBuildPhase
biorefs-cli-0.1.0> Creating a wheel...
biorefs-cli-0.1.0> pypa build flags: --no-isolation --outdir dist/ --wheel
biorefs-cli-0.1.0> * Getting build dependencies for wheel...
biorefs-cli-0.1.0> * Building wheel...
biorefs-cli-0.1.0> Successfully built biorefs_cli-0.1.0-py3-none-any.whl
biorefs-cli-0.1.0> Finished creating a wheel...
biorefs-cli-0.1.0> Finished executing pypaBuildPhase
biorefs-cli-0.1.0> Running phase: pythonRuntimeDepsCheckHook
biorefs-cli-0.1.0> Executing pythonRuntimeDepsCheck
biorefs-cli-0.1.0> Checking runtime dependencies for biorefs_cli-0.1.0-py3-none-any.whl
biorefs-cli-0.1.0> Finished executing pythonRuntimeDepsCheck
biorefs-cli-0.1.0> Running phase: installPhase
biorefs-cli-0.1.0> Executing pypaInstallPhase
biorefs-cli-0.1.0> Successfully installed biorefs_cli-0.1.0-py3-none-any.whl
biorefs-cli-0.1.0> Finished executing pypaInstallPhase
biorefs-cli-0.1.0> Running phase: pythonOutputDistPhase
biorefs-cli-0.1.0> Executing pythonOutputDistPhase
biorefs-cli-0.1.0> Finished executing pythonOutputDistPhase
biorefs-cli-0.1.0> Running phase: fixupPhase
biorefs-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/mrw2f40asp1dk5b0wack4jijz7g5npc3-biorefs-cli-0.1.0
biorefs-cli-0.1.0> checking for references to /build/ in /nix/store/mrw2f40asp1dk5b0wack4jijz7g5npc3-biorefs-cli-0.1.0...
biorefs-cli-0.1.0> patching script interpreter paths in /nix/store/mrw2f40asp1dk5b0wack4jijz7g5npc3-biorefs-cli-0.1.0
biorefs-cli-0.1.0> stripping (with command strip and flags -S -p) in /nix/store/mrw2f40asp1dk5b0wack4jijz7g5npc3-biorefs-cli-0.1.0/lib /nix/store/mrw2f40asp1dk5b0wack4jijz7g5npc3-biorefs-cli-0.1.0/bin
biorefs-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/ycr654yw69g05i6vsxhfh3aj59jzhp9c-biorefs-cli-0.1.0-dist
biorefs-cli-0.1.0> checking for references to /build/ in /nix/store/ycr654yw69g05i6vsxhfh3aj59jzhp9c-biorefs-cli-0.1.0-dist...
biorefs-cli-0.1.0> patching script interpreter paths in /nix/store/ycr654yw69g05i6vsxhfh3aj59jzhp9c-biorefs-cli-0.1.0-dist
biorefs-cli-0.1.0> Rewriting #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/bin/python3.14 to #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7
biorefs-cli-0.1.0> wrapping `/nix/store/mrw2f40asp1dk5b0wack4jijz7g5npc3-biorefs-cli-0.1.0/bin/biorefs-cli'...
biorefs-cli-0.1.0> Executing pythonRemoveTestsDir
biorefs-cli-0.1.0> Finished executing pythonRemoveTestsDir
biorefs-cli-0.1.0> Running phase: installCheckPhase
biorefs-cli-0.1.0> 47 files already formatted
biorefs-cli-0.1.0> All checks passed!
biorefs-cli-0.1.0> Success: no issues found in 47 source files
biorefs-cli-0.1.0> ============================= test session starts ==============================
biorefs-cli-0.1.0> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0
biorefs-cli-0.1.0> rootdir: /build/biorefs-cli
biorefs-cli-0.1.0> configfile: pyproject.toml
biorefs-cli-0.1.0> collected 185 items                                                            
biorefs-cli-0.1.0> 
biorefs-cli-0.1.0> tests/test_api_specs.py ..                                               [  1%]
biorefs-cli-0.1.0> tests/test_assay.py .........                                            [  5%]
biorefs-cli-0.1.0> tests/test_compound.py .......                                           [  9%]
biorefs-cli-0.1.0> tests/test_core_helpers.py .......                                       [ 13%]
biorefs-cli-0.1.0> tests/test_gene.py ..........                                            [ 18%]
biorefs-cli-0.1.0> tests/test_http_post.py ........                                         [ 23%]
biorefs-cli-0.1.0> tests/test_ncbi_command.py ..........                                    [ 28%]
biorefs-cli-0.1.0> tests/test_ncbi_extra.py ...                                             [ 30%]
biorefs-cli-0.1.0> tests/test_nucleotide.py ..........                                      [ 35%]
biorefs-cli-0.1.0> tests/test_openalex.py .........                                         [ 40%]
biorefs-cli-0.1.0> tests/test_paper.py ......                                               [ 43%]
biorefs-cli-0.1.0> tests/test_paper_extra.py ........                                       [ 48%]
biorefs-cli-0.1.0> tests/test_protein.py .............                                      [ 55%]
biorefs-cli-0.1.0> tests/test_rate_limit.py .........                                       [ 60%]
biorefs-cli-0.1.0> tests/test_rcsb_graphql.py ....                                          [ 62%]
biorefs-cli-0.1.0> tests/test_render_helpers.py ......                                      [ 65%]
biorefs-cli-0.1.0> tests/test_scaffold.py .....                                             [ 68%]
biorefs-cli-0.1.0> tests/test_setup.py .......                                              [ 71%]
biorefs-cli-0.1.0> tests/test_structure_fetch.py ...........                                [ 77%]
biorefs-cli-0.1.0> tests/test_structure_info.py .....                                       [ 80%]
biorefs-cli-0.1.0> tests/test_structure_render.py .......                                   [ 84%]
biorefs-cli-0.1.0> tests/test_structure_search.py ............                              [ 90%]
biorefs-cli-0.1.0> tests/test_uniprot.py .................                                  [100%]
biorefs-cli-0.1.0> 
biorefs-cli-0.1.0> ============================= 185 passed in 1.22s ==============================
biorefs-cli-0.1.0> Running phase: pythonCatchConflictsPhase
biorefs-cli-0.1.0> Running phase: pythonRemoveBinBytecodePhase
biorefs-cli-0.1.0> Running phase: pythonImportsCheckPhase
biorefs-cli-0.1.0> Executing pythonImportsCheckPhase
biorefs-cli-0.1.0> Running phase: pytestcachePhase
biorefs-cli-0.1.0> Running phase: pytestRemoveBytecodePhase

post-build step Route build to niks3: ok
Pushing mulatta/skillz to https://niks3.mulatta.io
time=2026-09-01T03:07:07.659+09:00 level=INFO msg="Uploading 0 paths to niks3.mulatta.io (24 already cached)"
time=2026-09-01T03:07:08.195+09:00 level=INFO msg="Upload complete. (1.613s)"