this derivation will be built:
  /nix/store/1wj4ygsmmc4a63h6m5192b86dzna034i-biorefs-cli-0.1.0.drv
these 20 paths will be fetched (17.7 MiB download, 74.0 MiB unpacked):
  /nix/store/g8ivybzv5vqivnqivgl51kq2r08k60mf-ensure-newer-sources-hook
  /nix/store/6km9d4mw66vcs3b5ahd16mv0yhvkagml-pypa-build-hook.sh
  /nix/store/jvhnbby29xq9504w7n9x92fbxz3cb5cl-pypa-install-hook
  /nix/store/9593xkp0zsybpzd4njx00h3bj8g19sa6-pytest-check-hook
  /nix/store/38sy7kvsxr4ihq055ifr4mpg22h3x1rg-python-catch-conflicts-hook
  /nix/store/b9i265hz56bpkv6m3s3mrbqi4pbczckr-python-imports-check-hook.sh
  /nix/store/8lkyxzljzgmh17pvj5q1b0m3ip7kyxza-python-namespaces-hook.sh
  /nix/store/9bmzy4cmbd1pzc4avqwra98j3n222akb-python-output-dist-hook
  /nix/store/yd03vybx1z5cjyhf3mcq46kwifrmr63h-python-remove-bin-bytecode-hook
  /nix/store/rvv5pgs332i82z33vsv5w0rr1mc7h7nh-python-remove-tests-dir-hook
  /nix/store/2178ns4chvd31jdkd0g3y4cqvbjqj7hx-python-runtime-deps-check-hook.sh
  /nix/store/n2nmcli8bb7yzpa3lknf02an5vz3mjz4-python3.14-build-1.5.1
  /nix/store/ybbyi6m6xznmq3qkb9wc9mj99zmpn5j2-python3.14-iniconfig-2.3.0
  /nix/store/5ar0ic9b3jfbmg52vjf58flgkn27p3vi-python3.14-installer-1.0.1
  /nix/store/n17ph4fyhapgnfrf9h8s3sgn06h7kwq2-python3.14-mypy-2.1.0
  /nix/store/ph010v2j8jnd1gsdhppqvnn25l5zb2js-python3.14-pyproject-hooks-1.2.0
  /nix/store/5srgg0xydsxbp6bkgnkqarw4i8bh40c8-python3.14-pytest-9.1.1
  /nix/store/aj5prhfyzdhrd7fzvm25jjqsgz0ymkdm-python3.14-ruff-0.16.2
  /nix/store/31wv1cbxzxf15w5y9rr1fhl7hx6q55np-python3.14-wheel-0.47.0
  /nix/store/n37qbjpp4rrwcz42yqbgpfgrr7l4wn5x-wrap-python-hook
building '/nix/store/1wj4ygsmmc4a63h6m5192b86dzna034i-biorefs-cli-0.1.0.drv'
biorefs-cli-0.1.0> Sourcing python-remove-tests-dir-hook
biorefs-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh
biorefs-cli-0.1.0> Sourcing python-remove-bin-bytecode-hook.sh
biorefs-cli-0.1.0> Sourcing pypa-build-hook
biorefs-cli-0.1.0> Using pypaBuildPhase
biorefs-cli-0.1.0> Sourcing python-runtime-deps-check-hook
biorefs-cli-0.1.0> Using pythonRuntimeDepsCheckHook
biorefs-cli-0.1.0> Sourcing pypa-install-hook
biorefs-cli-0.1.0> Using pypaInstallPhase
biorefs-cli-0.1.0> Sourcing python-imports-check-hook.sh
biorefs-cli-0.1.0> Using pythonImportsCheckPhase
biorefs-cli-0.1.0> Sourcing python-namespaces-hook
biorefs-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh
biorefs-cli-0.1.0> Sourcing pytest-check-hook
biorefs-cli-0.1.0> Running phase: unpackPhase
biorefs-cli-0.1.0> unpacking source archive /nix/store/dx3ndhmyv4raa13jx2ajz1z6jm3w7ksb-biorefs-cli
biorefs-cli-0.1.0> source root is biorefs-cli
biorefs-cli-0.1.0> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "biorefs-cli/tests/test_uniprot.py"
biorefs-cli-0.1.0> Running phase: patchPhase
biorefs-cli-0.1.0> Running phase: updateAutotoolsGnuConfigScriptsPhase
biorefs-cli-0.1.0> Running phase: configurePhase
biorefs-cli-0.1.0> no configure script, doing nothing
biorefs-cli-0.1.0> Running phase: buildPhase
biorefs-cli-0.1.0> Executing pypaBuildPhase
biorefs-cli-0.1.0> Creating a wheel...
biorefs-cli-0.1.0> pypa build flags: --no-isolation --outdir dist/ --wheel
biorefs-cli-0.1.0> * Getting build dependencies for wheel...
biorefs-cli-0.1.0> * Building wheel...
biorefs-cli-0.1.0> Successfully built biorefs_cli-0.1.0-py3-none-any.whl
biorefs-cli-0.1.0> Finished creating a wheel...
biorefs-cli-0.1.0> Finished executing pypaBuildPhase
biorefs-cli-0.1.0> Running phase: pythonRuntimeDepsCheckHook
biorefs-cli-0.1.0> Executing pythonRuntimeDepsCheck
biorefs-cli-0.1.0> Checking runtime dependencies for biorefs_cli-0.1.0-py3-none-any.whl
biorefs-cli-0.1.0> Finished executing pythonRuntimeDepsCheck
biorefs-cli-0.1.0> Running phase: installPhase
biorefs-cli-0.1.0> Executing pypaInstallPhase
biorefs-cli-0.1.0> Successfully installed biorefs_cli-0.1.0-py3-none-any.whl
biorefs-cli-0.1.0> Finished executing pypaInstallPhase
biorefs-cli-0.1.0> Running phase: pythonOutputDistPhase
biorefs-cli-0.1.0> Executing pythonOutputDistPhase
biorefs-cli-0.1.0> Finished executing pythonOutputDistPhase
biorefs-cli-0.1.0> Running phase: fixupPhase
biorefs-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/fxinwsr28zhf5r9i7dkmwnpr4fi7xkb6-biorefs-cli-0.1.0
biorefs-cli-0.1.0> checking for references to /build/ in /nix/store/fxinwsr28zhf5r9i7dkmwnpr4fi7xkb6-biorefs-cli-0.1.0...
biorefs-cli-0.1.0> patching script interpreter paths in /nix/store/fxinwsr28zhf5r9i7dkmwnpr4fi7xkb6-biorefs-cli-0.1.0
biorefs-cli-0.1.0> stripping (with command strip and flags -S -p) in /nix/store/fxinwsr28zhf5r9i7dkmwnpr4fi7xkb6-biorefs-cli-0.1.0/lib /nix/store/fxinwsr28zhf5r9i7dkmwnpr4fi7xkb6-biorefs-cli-0.1.0/bin
biorefs-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/5nrazqldww51p1ysl0y3b05ilqc8bjyq-biorefs-cli-0.1.0-dist
biorefs-cli-0.1.0> checking for references to /build/ in /nix/store/5nrazqldww51p1ysl0y3b05ilqc8bjyq-biorefs-cli-0.1.0-dist...
biorefs-cli-0.1.0> patching script interpreter paths in /nix/store/5nrazqldww51p1ysl0y3b05ilqc8bjyq-biorefs-cli-0.1.0-dist
biorefs-cli-0.1.0> Rewriting #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3.14 to #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7
biorefs-cli-0.1.0> wrapping `/nix/store/fxinwsr28zhf5r9i7dkmwnpr4fi7xkb6-biorefs-cli-0.1.0/bin/biorefs-cli'...
biorefs-cli-0.1.0> Executing pythonRemoveTestsDir
biorefs-cli-0.1.0> Finished executing pythonRemoveTestsDir
biorefs-cli-0.1.0> Running phase: installCheckPhase
biorefs-cli-0.1.0> 47 files already formatted
biorefs-cli-0.1.0> All checks passed!
biorefs-cli-0.1.0> Success: no issues found in 47 source files
biorefs-cli-0.1.0> ============================= test session starts ==============================
biorefs-cli-0.1.0> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0
biorefs-cli-0.1.0> rootdir: /build/biorefs-cli
biorefs-cli-0.1.0> configfile: pyproject.toml
biorefs-cli-0.1.0> collected 185 items                                                            
biorefs-cli-0.1.0> 
biorefs-cli-0.1.0> tests/test_api_specs.py ..                                               [  1%]
biorefs-cli-0.1.0> tests/test_assay.py .........                                            [  5%]
biorefs-cli-0.1.0> tests/test_compound.py .......                                           [  9%]
biorefs-cli-0.1.0> tests/test_core_helpers.py .......                                       [ 13%]
biorefs-cli-0.1.0> tests/test_gene.py ..........                                            [ 18%]
biorefs-cli-0.1.0> tests/test_http_post.py ........                                         [ 23%]
biorefs-cli-0.1.0> tests/test_ncbi_command.py ..........                                    [ 28%]
biorefs-cli-0.1.0> tests/test_ncbi_extra.py ...                                             [ 30%]
biorefs-cli-0.1.0> tests/test_nucleotide.py ..........                                      [ 35%]
biorefs-cli-0.1.0> tests/test_openalex.py .........                                         [ 40%]
biorefs-cli-0.1.0> tests/test_paper.py ......                                               [ 43%]
biorefs-cli-0.1.0> tests/test_paper_extra.py ........                                       [ 48%]
biorefs-cli-0.1.0> tests/test_protein.py .............                                      [ 55%]
biorefs-cli-0.1.0> tests/test_rate_limit.py .........                                       [ 60%]
biorefs-cli-0.1.0> tests/test_rcsb_graphql.py ....                                          [ 62%]
biorefs-cli-0.1.0> tests/test_render_helpers.py ......                                      [ 65%]
biorefs-cli-0.1.0> tests/test_scaffold.py .....                                             [ 68%]
biorefs-cli-0.1.0> tests/test_setup.py .......                                              [ 71%]
biorefs-cli-0.1.0> tests/test_structure_fetch.py ...........                                [ 77%]
biorefs-cli-0.1.0> tests/test_structure_info.py .....                                       [ 80%]
biorefs-cli-0.1.0> tests/test_structure_render.py .......                                   [ 84%]
biorefs-cli-0.1.0> tests/test_structure_search.py ............                              [ 90%]
biorefs-cli-0.1.0> tests/test_uniprot.py .................                                  [100%]
biorefs-cli-0.1.0> 
biorefs-cli-0.1.0> ============================= 185 passed in 1.34s ==============================
biorefs-cli-0.1.0> Running phase: pythonCatchConflictsPhase
biorefs-cli-0.1.0> Running phase: pythonRemoveBinBytecodePhase
biorefs-cli-0.1.0> Running phase: pythonImportsCheckPhase
biorefs-cli-0.1.0> Executing pythonImportsCheckPhase
biorefs-cli-0.1.0> Running phase: pytestcachePhase
biorefs-cli-0.1.0> Running phase: pytestRemoveBytecodePhase

post-build step Route build to niks3: ok
Pushing mulatta/skillz to https://niks3.mulatta.io
time=2026-08-28T01:23:59.948+09:00 level=INFO msg="Uploading 0 paths to niks3.mulatta.io (24 already cached)"
time=2026-08-28T01:24:00.509+09:00 level=INFO msg="Upload complete. (651ms)"