this derivation will be built:
  /nix/store/q5gx9i355nvnpzw0983q1wzknk5p4dq9-biorefs-cli-0.1.0.drv
these 28 paths will be fetched (18.4 MiB download, 77.2 MiB unpacked):
  /nix/store/n270y4a1az60ib3mhfiwyvmbs8jc0vjw-ensure-newer-sources-hook
  /nix/store/n642r7qrsldf792clkb3s7cn2ckvx4qw-pypa-build-hook.sh
  /nix/store/4wlznh578q7r4vry0z35p0cp8mmlw05m-pypa-install-hook
  /nix/store/ap5y17n5m4gkrgh1h9dbb8k45d63an6k-pytest-check-hook
  /nix/store/s2a0fvmvlpqc79zyxk66jrkr26s5vqc6-python-catch-conflicts-hook
  /nix/store/c22p17b6y8phdk02nca7py1vjmlwinw5-python-imports-check-hook.sh
  /nix/store/bxf211dncwm8ixy8bwr6v3phjgfkm32k-python-namespaces-hook.sh
  /nix/store/mqgjim0ymcidgiamzsyl3f0zp85wr52a-python-output-dist-hook
  /nix/store/wf5p4pgzbbxpp2avh183ykpk2m4rzh9n-python-remove-bin-bytecode-hook
  /nix/store/n6mdfmyg3yi8mq5ywzwy3kxfwnzl6475-python-remove-tests-dir-hook
  /nix/store/kgma60gps7zc1scln5ccj9049hxf2z3m-python-runtime-deps-check-hook.sh
  /nix/store/b0jycclcphq52fd935cqw62b962hpndk-python3.14-build-1.5.1
  /nix/store/jagynfd4bqgzrn0nksv9bg1gg6rj0a67-python3.14-editables-0.6
  /nix/store/6wj1qywcyka57anhsl0pm1xnmwfdpay8-python3.14-flit-core-3.12.0
  /nix/store/71mand2cdicbgmrjysll4ab7d9pdx3y6-python3.14-hatchling-1.31.0
  /nix/store/rnwp7lc2lf5w43gk4mzpw8m1xg2b0c70-python3.14-iniconfig-2.3.0
  /nix/store/yjybff7894aa0s73s3zxa87prrk667b9-python3.14-installer-1.0.1
  /nix/store/12w7l7lscmb7v5f4sylys12vgjlla01i-python3.14-librt-0.13.0
  /nix/store/n490d9yqbc4mv5gq79gr04wvbk9mqik0-python3.14-mypy-2.1.0
  /nix/store/a2yab6hn0sj9ayjkn3jvy32py7v2828g-python3.14-mypy-extensions-1.1.0
  /nix/store/kzyjxn1cvflafnslc81yw1rh7m16ymav-python3.14-pathspec-1.1.1
  /nix/store/m8r78x8j7536cq9v33x27jb496n381jz-python3.14-pluggy-1.6.0
  /nix/store/zqsnrcfic77hc6v3hzycb7bl6qfp0fwv-python3.14-pyproject-hooks-1.2.0
  /nix/store/qlw157v4jw1k1w4c7a041lxz7w0ajxx7-python3.14-pytest-9.1.1
  /nix/store/zx9c4rmbf463w2nc4xxynaxcqihl58yi-python3.14-ruff-0.16.1
  /nix/store/jswbbiy047y4ymvsh12a6izl4qa7f6jr-python3.14-trove-classifiers-2026.6.1.19
  /nix/store/sa2qvd26yrbsk2z8mm9a77l1f1szhln2-python3.14-wheel-0.47.0
  /nix/store/wj0zw4yvjcdr960ghbhv4jf2ham8l9bk-wrap-python-hook
building '/nix/store/q5gx9i355nvnpzw0983q1wzknk5p4dq9-biorefs-cli-0.1.0.drv'
biorefs-cli-0.1.0> Sourcing python-remove-tests-dir-hook
biorefs-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh
biorefs-cli-0.1.0> Sourcing python-remove-bin-bytecode-hook.sh
biorefs-cli-0.1.0> Sourcing pypa-build-hook
biorefs-cli-0.1.0> Using pypaBuildPhase
biorefs-cli-0.1.0> Sourcing python-runtime-deps-check-hook
biorefs-cli-0.1.0> Using pythonRuntimeDepsCheckHook
biorefs-cli-0.1.0> Sourcing pypa-install-hook
biorefs-cli-0.1.0> Using pypaInstallPhase
biorefs-cli-0.1.0> Sourcing python-imports-check-hook.sh
biorefs-cli-0.1.0> Using pythonImportsCheckPhase
biorefs-cli-0.1.0> Sourcing python-namespaces-hook
biorefs-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh
biorefs-cli-0.1.0> Sourcing pytest-check-hook
biorefs-cli-0.1.0> Running phase: unpackPhase
biorefs-cli-0.1.0> unpacking source archive /nix/store/dx3ndhmyv4raa13jx2ajz1z6jm3w7ksb-biorefs-cli
biorefs-cli-0.1.0> source root is biorefs-cli
biorefs-cli-0.1.0> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "biorefs-cli/tests/test_uniprot.py"
biorefs-cli-0.1.0> Running phase: patchPhase
biorefs-cli-0.1.0> Running phase: updateAutotoolsGnuConfigScriptsPhase
biorefs-cli-0.1.0> Running phase: configurePhase
biorefs-cli-0.1.0> no configure script, doing nothing
biorefs-cli-0.1.0> Running phase: buildPhase
biorefs-cli-0.1.0> Executing pypaBuildPhase
biorefs-cli-0.1.0> Creating a wheel...
biorefs-cli-0.1.0> pypa build flags: --no-isolation --outdir dist/ --wheel
biorefs-cli-0.1.0> * Getting build dependencies for wheel...
biorefs-cli-0.1.0> * Building wheel...
biorefs-cli-0.1.0> Successfully built biorefs_cli-0.1.0-py3-none-any.whl
biorefs-cli-0.1.0> Finished creating a wheel...
biorefs-cli-0.1.0> Finished executing pypaBuildPhase
biorefs-cli-0.1.0> Running phase: pythonRuntimeDepsCheckHook
biorefs-cli-0.1.0> Executing pythonRuntimeDepsCheck
biorefs-cli-0.1.0> Checking runtime dependencies for biorefs_cli-0.1.0-py3-none-any.whl
biorefs-cli-0.1.0> Finished executing pythonRuntimeDepsCheck
biorefs-cli-0.1.0> Running phase: installPhase
biorefs-cli-0.1.0> Executing pypaInstallPhase
biorefs-cli-0.1.0> Successfully installed biorefs_cli-0.1.0-py3-none-any.whl
biorefs-cli-0.1.0> Finished executing pypaInstallPhase
biorefs-cli-0.1.0> Running phase: pythonOutputDistPhase
biorefs-cli-0.1.0> Executing pythonOutputDistPhase
biorefs-cli-0.1.0> Finished executing pythonOutputDistPhase
biorefs-cli-0.1.0> Running phase: fixupPhase
biorefs-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/dw61bkvwdh221q067wznwacjbc0bl58n-biorefs-cli-0.1.0
biorefs-cli-0.1.0> checking for references to /build/ in /nix/store/dw61bkvwdh221q067wznwacjbc0bl58n-biorefs-cli-0.1.0...
biorefs-cli-0.1.0> patching script interpreter paths in /nix/store/dw61bkvwdh221q067wznwacjbc0bl58n-biorefs-cli-0.1.0
biorefs-cli-0.1.0> stripping (with command strip and flags -S -p) in  /nix/store/dw61bkvwdh221q067wznwacjbc0bl58n-biorefs-cli-0.1.0/lib /nix/store/dw61bkvwdh221q067wznwacjbc0bl58n-biorefs-cli-0.1.0/bin
biorefs-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/a6112gvqnjzg51m7kwk65gkmml2a5b16-biorefs-cli-0.1.0-dist
biorefs-cli-0.1.0> checking for references to /build/ in /nix/store/a6112gvqnjzg51m7kwk65gkmml2a5b16-biorefs-cli-0.1.0-dist...
biorefs-cli-0.1.0> patching script interpreter paths in /nix/store/a6112gvqnjzg51m7kwk65gkmml2a5b16-biorefs-cli-0.1.0-dist
biorefs-cli-0.1.0> Rewriting #!/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/bin/python3.14 to #!/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6
biorefs-cli-0.1.0> wrapping `/nix/store/dw61bkvwdh221q067wznwacjbc0bl58n-biorefs-cli-0.1.0/bin/biorefs-cli'...
biorefs-cli-0.1.0> Executing pythonRemoveTestsDir
biorefs-cli-0.1.0> Finished executing pythonRemoveTestsDir
biorefs-cli-0.1.0> Running phase: installCheckPhase
biorefs-cli-0.1.0> 47 files already formatted
biorefs-cli-0.1.0> All checks passed!
biorefs-cli-0.1.0> Success: no issues found in 47 source files
biorefs-cli-0.1.0> ============================= test session starts ==============================
biorefs-cli-0.1.0> platform linux -- Python 3.14.6, pytest-9.1.1, pluggy-1.6.0
biorefs-cli-0.1.0> rootdir: /build/biorefs-cli
biorefs-cli-0.1.0> configfile: pyproject.toml
biorefs-cli-0.1.0> collected 185 items                                                            
biorefs-cli-0.1.0> 
biorefs-cli-0.1.0> tests/test_api_specs.py ..                                               [  1%]
biorefs-cli-0.1.0> tests/test_assay.py .........                                            [  5%]
biorefs-cli-0.1.0> tests/test_compound.py .......                                           [  9%]
biorefs-cli-0.1.0> tests/test_core_helpers.py .......                                       [ 13%]
biorefs-cli-0.1.0> tests/test_gene.py ..........                                            [ 18%]
biorefs-cli-0.1.0> tests/test_http_post.py ........                                         [ 23%]
biorefs-cli-0.1.0> tests/test_ncbi_command.py ..........                                    [ 28%]
biorefs-cli-0.1.0> tests/test_ncbi_extra.py ...                                             [ 30%]
biorefs-cli-0.1.0> tests/test_nucleotide.py ..........                                      [ 35%]
biorefs-cli-0.1.0> tests/test_openalex.py .........                                         [ 40%]
biorefs-cli-0.1.0> tests/test_paper.py ......                                               [ 43%]
biorefs-cli-0.1.0> tests/test_paper_extra.py ........                                       [ 48%]
biorefs-cli-0.1.0> tests/test_protein.py .............                                      [ 55%]
biorefs-cli-0.1.0> tests/test_rate_limit.py .........                                       [ 60%]
biorefs-cli-0.1.0> tests/test_rcsb_graphql.py ....                                          [ 62%]
biorefs-cli-0.1.0> tests/test_render_helpers.py ......                                      [ 65%]
biorefs-cli-0.1.0> tests/test_scaffold.py .....                                             [ 68%]
biorefs-cli-0.1.0> tests/test_setup.py .......                                              [ 71%]
biorefs-cli-0.1.0> tests/test_structure_fetch.py ...........                                [ 77%]
biorefs-cli-0.1.0> tests/test_structure_info.py .....                                       [ 80%]
biorefs-cli-0.1.0> tests/test_structure_render.py .......                                   [ 84%]
biorefs-cli-0.1.0> tests/test_structure_search.py ............                              [ 90%]
biorefs-cli-0.1.0> tests/test_uniprot.py .................                                  [100%]
biorefs-cli-0.1.0> 
biorefs-cli-0.1.0> ============================= 185 passed in 1.27s ==============================
biorefs-cli-0.1.0> Running phase: pythonCatchConflictsPhase
biorefs-cli-0.1.0> Running phase: pythonRemoveBinBytecodePhase
biorefs-cli-0.1.0> Running phase: pythonImportsCheckPhase
biorefs-cli-0.1.0> Executing pythonImportsCheckPhase
biorefs-cli-0.1.0> Running phase: pytestcachePhase
biorefs-cli-0.1.0> Running phase: pytestRemoveBytecodePhase

post-build step Route build to niks3: ok
Pushing mulatta/skillz to https://niks3.mulatta.io
time=2026-08-05T17:10:17.665+09:00 level=INFO msg="Uploading 1 paths to niks3.mulatta.io (23 already cached)"
time=2026-08-05T17:10:17.666+09:00 level=INFO msg="Uploading dw61bkvwdh221q067wznwacjbc0bl58n-biorefs-cli-0.1.0 (2.3MB)"
time=2026-08-05T17:10:18.848+09:00 level=INFO msg="Uploading 1 narinfos"
time=2026-08-05T17:10:19.303+09:00 level=INFO msg="Upload complete. (1.715s)"