biorefs-cli-0.1.0
default.checks.x86_64-linux.package-biorefs-cli
· build #33
· raw
1Sourcing python-remove-tests-dir-hook2Sourcing python-catch-conflicts-hook.sh3Sourcing python-remove-bin-bytecode-hook.sh4Sourcing pypa-build-hook5Using pypaBuildPhase6Sourcing python-runtime-deps-check-hook7Using pythonRuntimeDepsCheckHook8Sourcing pypa-install-hook9Using pypaInstallPhase10Sourcing python-imports-check-hook.sh11Using pythonImportsCheckPhase12Sourcing python-namespaces-hook13Sourcing python-catch-conflicts-hook.sh14Sourcing pytest-check-hook
unpackPhase
15unpacking source archive /nix/store/q4jxmbgh2m4sz5wx34196v8cpmy9x7vl-biorefs-cli16source root is biorefs-cli17setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "biorefs-cli/tests/test_uniprot.py"configurePhase
18no configure script, doing nothingbuildPhase
19Executing pypaBuildPhase20Creating a wheel...21pypa build flags: --no-isolation --outdir dist/ --wheel22* Getting build dependencies for wheel...23* Building wheel...24Successfully built biorefs_cli-0.1.0-py3-none-any.whl25Finished creating a wheel...26Finished executing pypaBuildPhasepythonRuntimeDepsCheckHook
27Executing pythonRuntimeDepsCheck28Checking runtime dependencies for biorefs_cli-0.1.0-py3-none-any.whl29Finished executing pythonRuntimeDepsCheckinstallPhase
30Executing pypaInstallPhase31Successfully installed biorefs_cli-0.1.0-py3-none-any.whl32Finished executing pypaInstallPhasepythonOutputDistPhase
33Executing pythonOutputDistPhase34Finished executing pythonOutputDistPhasefixupPhase
35shrinking RPATHs of ELF executables and libraries in /nix/store/ih0aividi8qldpyq86kl092ai6r626v7-biorefs-cli-0.1.036checking for references to /build/ in /nix/store/ih0aividi8qldpyq86kl092ai6r626v7-biorefs-cli-0.1.0...37patching script interpreter paths in /nix/store/ih0aividi8qldpyq86kl092ai6r626v7-biorefs-cli-0.1.038stripping (with command strip and flags -S -p) in /nix/store/ih0aividi8qldpyq86kl092ai6r626v7-biorefs-cli-0.1.0/lib /nix/store/ih0aividi8qldpyq86kl092ai6r626v7-biorefs-cli-0.1.0/bin39shrinking RPATHs of ELF executables and libraries in /nix/store/rxzvgx1z3lam8z44pn9d0szrgdbxi02f-biorefs-cli-0.1.0-dist40checking for references to /build/ in /nix/store/rxzvgx1z3lam8z44pn9d0szrgdbxi02f-biorefs-cli-0.1.0-dist...41patching script interpreter paths in /nix/store/rxzvgx1z3lam8z44pn9d0szrgdbxi02f-biorefs-cli-0.1.0-dist42Rewriting #!/nix/store/rgnappqqc5vbq60gza5fflyk84sylwl6-python3-3.14.6/bin/python3.14 to #!/nix/store/rgnappqqc5vbq60gza5fflyk84sylwl6-python3-3.14.643wrapping `/nix/store/ih0aividi8qldpyq86kl092ai6r626v7-biorefs-cli-0.1.0/bin/biorefs-cli'...44Executing pythonRemoveTestsDir45Finished executing pythonRemoveTestsDirinstallCheckPhase
4647 files already formatted47All checks passed!48Success: no issues found in 47 source files49============================= test session starts ==============================50platform linux -- Python 3.14.6, pytest-9.1.1, pluggy-1.6.051rootdir: /build/biorefs-cli52configfile: pyproject.toml53collected 185 items 5455tests/test_api_specs.py .. [ 1%]56tests/test_assay.py ......... [ 5%]57tests/test_compound.py ....... [ 9%]58tests/test_core_helpers.py ....... [ 13%]59tests/test_gene.py .......... [ 18%]60tests/test_http_post.py ........ [ 23%]61tests/test_ncbi_command.py .......... [ 28%]62tests/test_ncbi_extra.py ... [ 30%]63tests/test_nucleotide.py .......... [ 35%]64tests/test_openalex.py ......... [ 40%]65tests/test_paper.py ...... [ 43%]66tests/test_paper_extra.py ........ [ 48%]67tests/test_protein.py ............. [ 55%]68tests/test_rate_limit.py ......... [ 60%]69tests/test_rcsb_graphql.py .... [ 62%]70tests/test_render_helpers.py ...... [ 65%]71tests/test_scaffold.py ..... [ 68%]72tests/test_setup.py ....... [ 71%]73tests/test_structure_fetch.py ........... [ 77%]74tests/test_structure_info.py ..... [ 80%]75tests/test_structure_render.py ....... [ 84%]76tests/test_structure_search.py ............ [ 90%]77tests/test_uniprot.py ................. [100%]7879============================= 185 passed in 1.46s ==============================pythonImportsCheckPhase
80Executing pythonImportsCheckPhase