this derivation will be built: /nix/store/zwd31rhhypy78193ibg5dg5rmblavl50-pymol-cli-0.1.0.drv these 48 paths will be fetched (60.2 MiB download, 225.9 MiB unpacked): /nix/store/97basif1q2cxklkdgbf2j1d4zy1gxd95-glew-2.3.1 /nix/store/00skrrvp7n0h3gp8najps2k51p15va33-hdf5-cpp-1.14.6 /nix/store/1jvbh3ypg4ck4cl1xf2xax44zrjr7vng-libaec-1.1.7 /nix/store/ixg78gpa15zfcr0rnr9ars8zjpki2k68-libpq-18.6 /nix/store/fsi49dj3svbqpj822njc65ylajc0qh69-libxcb-image-0.4.1 /nix/store/lgk9360k5m85z5nv3kif5l17cqmz452c-libxcb-keysyms-0.4.1 /nix/store/x6w6ikcw4avar3ykyd6srkr4ykxpch10-libxcb-render-util-0.3.10 /nix/store/xwxkww6l19pqvwz35k4y7gih4xw7ni1d-libxcb-util-0.4.1 /nix/store/q7a71m0j2pwhxzh3pwibdma06ns0lxxq-libxcb-wm-0.4.2 /nix/store/zdxyf7gyvqv4aap87s5m98d3w4pfcn9j-libzip-1.11.4 /nix/store/crypffz70vnq6svfjrxprdiy19nzhx8z-mariadb-connector-c-3.3.5 /nix/store/04ii0vcsnkfcg9qnz73p6n993qqa0vq3-netcdf-4.10.1 /nix/store/zwz70fi0v72aswbw5axj8gfxbcqw1gb7-pymol-3.1.0 /nix/store/cgknvydg87rr6zg9031vqd9jdhf31fai-pypa-build-hook.sh /nix/store/vcyvxgzq8xh633sx9gghzjh0fkcl6x8b-pypa-install-hook /nix/store/jamc5mdgkza901ybnkmq007rh7wsl7qy-pytest-check-hook /nix/store/w6dircc3f4f745my3gq95hdbkk7bvr0h-python-catch-conflicts-hook /nix/store/35rk2x7hsckqsn42407rgjjaladlrcrh-python-imports-check-hook.sh /nix/store/j1na7wnx9wxkkv9kw9fdhrddzn3apvqp-python-namespaces-hook.sh /nix/store/jd0nnjczrfnb0kn6p42lqm26dfiylvyp-python-remove-tests-dir-hook /nix/store/vwpxymga69qm3h5yd920p8iy4xkzpbzb-python-runtime-deps-check-hook.sh /nix/store/lqvxqpqa7yw0qcl5vf7i2hkh00zls5m0-python3.14-build-1.5.1 /nix/store/w1zhx1qx0rvnyg881imp8ikplg06k7cq-python3.14-dbus-python-1.4.0 /nix/store/br6gylz0xkm22kjjrz80pk47cqfc91vn-python3.14-dbus-python-1.4.0-dev /nix/store/62rg26wc6jkbm2r0mf0mj5qw1pga8gj2-python3.14-editables-0.6 /nix/store/nxz9hnjkkcchrkbqw7gqsirga03rzzqi-python3.14-hatchling-1.31.0 /nix/store/kh57jfid292x08slhx8hq4yva2x4idlc-python3.14-iniconfig-2.3.0 /nix/store/4cahraqqkmfws6i3l5kwpayn0i0i12s5-python3.14-installer-1.0.1 /nix/store/7nr7922ihsgzmyxxqjm4s233f6dglmzx-python3.14-mypy-2.1.0 /nix/store/68v904jylhiff5yy0s9lx8jawp68cad0-python3.14-packaging-26.2 /nix/store/bp2232ryaf5mwwivn77s7qcfzgz1fafb-python3.14-pluggy-1.6.0 /nix/store/khhd398h6fy0alc7fjfyqssd1bz58xr1-python3.14-pyproject-hooks-1.2.0 /nix/store/bxm9cmfq4p0a66pzbqy85hm0wxp0xvhh-python3.14-pyqt5-5.15.10 /nix/store/2jwpbvmms2xcji5jpi7y8dvsgia7w050-python3.14-pyqt5-5.15.10-dev /nix/store/hj8dcji0hvlkh5nr535dlqphzlbb7baz-python3.14-pyqt5-sip-12.17.0 /nix/store/fwqp3f54vqakq82lfrpiw908xi1iln0w-python3.14-pytest-9.1.1 /nix/store/hgjl7vg6hqni18zs5d3g52m4j8a23lyq-python3.14-ruff-0.16.7 /nix/store/fd0wgn0ppayig3f60cxpc98xp7jbsdyf-python3.14-trove-classifiers-2026.6.1.19 /nix/store/byxqz565bpx22h98v1qm1pl6x3ny72w1-python3.14-wheel-0.47.0 /nix/store/0jcbfsyps4v8vs9q587bja7qf0kjs9q7-qtbase-5.15.19 /nix/store/r0ajzl85lzz9ga6s68g42ildw3b8ywr9-qtbase-5.15.19-bin /nix/store/xzxpmkhaw9qr0rfybi6m0mh19rzs0hai-qtdeclarative-5.15.19 /nix/store/1fcrk55wrbql4sm04kjjmgsm6m66px17-qtdeclarative-5.15.19-bin /nix/store/qfkvjabg2zak6mc4bzmy1pa1yj792pim-qtsvg-5.15.19 /nix/store/6akqnzjcb15id9kpfh7j4pacd2wywl1l-qtsvg-5.15.19-bin /nix/store/i0m3i3yp4pblc72cfc0f1b87qyf7f90n-qttranslations-5.15.19 /nix/store/42jkfaw6f6z3y7hxmch2j9zz1fcv89yh-qtwebchannel-5.15.19 /nix/store/bnm3ppcxy786lcfq6lqni25mi9svpj32-wrap-python-hook building '/nix/store/zwd31rhhypy78193ibg5dg5rmblavl50-pymol-cli-0.1.0.drv' pymol-cli-0.1.0> Sourcing python-remove-tests-dir-hook pymol-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh pymol-cli-0.1.0> Sourcing python-remove-bin-bytecode-hook.sh pymol-cli-0.1.0> Sourcing pypa-build-hook pymol-cli-0.1.0> Using pypaBuildPhase pymol-cli-0.1.0> Sourcing python-runtime-deps-check-hook pymol-cli-0.1.0> Using pythonRuntimeDepsCheckHook pymol-cli-0.1.0> Sourcing pypa-install-hook pymol-cli-0.1.0> Using pypaInstallPhase pymol-cli-0.1.0> Sourcing python-imports-check-hook.sh pymol-cli-0.1.0> Using pythonImportsCheckPhase pymol-cli-0.1.0> Sourcing python-namespaces-hook pymol-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh pymol-cli-0.1.0> Sourcing pytest-check-hook pymol-cli-0.1.0> Using pytestCheckPhase pymol-cli-0.1.0> Using checkPhaseThreadLimitHook pymol-cli-0.1.0> Running phase: unpackPhase pymol-cli-0.1.0> unpacking source archive /nix/store/r674dpqpajrlynm886vcapg2x8fmzrln-pymol-cli pymol-cli-0.1.0> source root is pymol-cli pymol-cli-0.1.0> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "pymol-cli/tests/test_rpc_session.py" pymol-cli-0.1.0> Running phase: patchPhase pymol-cli-0.1.0> Running phase: updateAutotoolsGnuConfigScriptsPhase pymol-cli-0.1.0> Running phase: configurePhase pymol-cli-0.1.0> no configure script, doing nothing pymol-cli-0.1.0> Running phase: buildPhase pymol-cli-0.1.0> Executing pypaBuildPhase pymol-cli-0.1.0> Creating a wheel... pymol-cli-0.1.0> pypa build flags: --no-isolation --outdir dist/ --wheel pymol-cli-0.1.0> * Getting build dependencies for wheel... pymol-cli-0.1.0> * Building wheel... pymol-cli-0.1.0> Successfully built pymol_cli-0.1.0-py3-none-any.whl pymol-cli-0.1.0> Finished creating a wheel... pymol-cli-0.1.0> Finished executing pypaBuildPhase pymol-cli-0.1.0> Running phase: pythonRuntimeDepsCheckHook pymol-cli-0.1.0> Executing pythonRuntimeDepsCheck pymol-cli-0.1.0> Checking runtime dependencies for pymol_cli-0.1.0-py3-none-any.whl pymol-cli-0.1.0> Finished executing pythonRuntimeDepsCheck pymol-cli-0.1.0> Running phase: installPhase pymol-cli-0.1.0> Executing pypaInstallPhase pymol-cli-0.1.0> Successfully installed pymol_cli-0.1.0-py3-none-any.whl pymol-cli-0.1.0> Finished executing pypaInstallPhase pymol-cli-0.1.0> Running phase: pythonOutputDistPhase pymol-cli-0.1.0> Executing pythonOutputDistPhase pymol-cli-0.1.0> Finished executing pythonOutputDistPhase pymol-cli-0.1.0> Running phase: fixupPhase pymol-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/j3dn4ylbcy7bzjabky79rkkvq3lihbjv-pymol-cli-0.1.0 pymol-cli-0.1.0> checking for references to /build/ in /nix/store/j3dn4ylbcy7bzjabky79rkkvq3lihbjv-pymol-cli-0.1.0... pymol-cli-0.1.0> patching script interpreter paths in /nix/store/j3dn4ylbcy7bzjabky79rkkvq3lihbjv-pymol-cli-0.1.0 pymol-cli-0.1.0> stripping (with command strip and flags -S -p) in /nix/store/j3dn4ylbcy7bzjabky79rkkvq3lihbjv-pymol-cli-0.1.0/lib /nix/store/j3dn4ylbcy7bzjabky79rkkvq3lihbjv-pymol-cli-0.1.0/bin pymol-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/lzxpsxhpq85lrmyy91cyayvl5fy6iiyr-pymol-cli-0.1.0-dist pymol-cli-0.1.0> checking for references to /build/ in /nix/store/lzxpsxhpq85lrmyy91cyayvl5fy6iiyr-pymol-cli-0.1.0-dist... pymol-cli-0.1.0> patching script interpreter paths in /nix/store/lzxpsxhpq85lrmyy91cyayvl5fy6iiyr-pymol-cli-0.1.0-dist pymol-cli-0.1.0> Rewriting #!/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/bin/python3.14 to #!/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7 pymol-cli-0.1.0> wrapping `/nix/store/j3dn4ylbcy7bzjabky79rkkvq3lihbjv-pymol-cli-0.1.0/bin/pymol-cli'... pymol-cli-0.1.0> Rewriting #!/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/bin/python3.14 to #!/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7 pymol-cli-0.1.0> wrapping `/nix/store/j3dn4ylbcy7bzjabky79rkkvq3lihbjv-pymol-cli-0.1.0/bin/pymol-engine'... pymol-cli-0.1.0> Rewriting #!/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/bin/python3.14 to #!/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7 pymol-cli-0.1.0> wrapping `/nix/store/j3dn4ylbcy7bzjabky79rkkvq3lihbjv-pymol-cli-0.1.0/bin/pymol-mcp'... pymol-cli-0.1.0> Executing pythonRemoveTestsDir pymol-cli-0.1.0> Finished executing pythonRemoveTestsDir pymol-cli-0.1.0> Running phase: installCheckPhase pymol-cli-0.1.0> setting known thread variables to default: 1 pymol-cli-0.1.0> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 pymol-cli-0.1.0> no Makefile or custom installCheckPhase, doing nothing pymol-cli-0.1.0> Running phase: pythonCatchConflictsPhase pymol-cli-0.1.0> Running phase: pythonRemoveBinBytecodePhase pymol-cli-0.1.0> Running phase: pythonImportsCheckPhase pymol-cli-0.1.0> Executing pythonImportsCheckPhase pymol-cli-0.1.0> Check whether the following modules can be imported: pymol_cli pymol-cli-0.1.0> Running phase: pytestCheckPhase pymol-cli-0.1.0> Executing pytestCheckPhase pymol-cli-0.1.0> 67 files already formatted pymol-cli-0.1.0> All checks passed! pymol-cli-0.1.0> Success: no issues found in 66 source files pymol-cli-0.1.0> setting known thread variables to default: 1 pymol-cli-0.1.0> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 pymol-cli-0.1.0> pytest flags: -m pytest pymol-cli-0.1.0> ============================= test session starts ============================== pymol-cli-0.1.0> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0 pymol-cli-0.1.0> rootdir: /build/pymol-cli pymol-cli-0.1.0> configfile: pyproject.toml pymol-cli-0.1.0> collected 183 items pymol-cli-0.1.0> pymol-cli-0.1.0> tests/test_cli_domain.py .. [ 1%] pymol-cli-0.1.0> tests/test_cli_engine.py ... [ 2%] pymol-cli-0.1.0> tests/test_cli_gui_command.py . [ 3%] pymol-cli-0.1.0> tests/test_cli_hardening.py ..................... [ 14%] pymol-cli-0.1.0> tests/test_engine_current_process.py ........... [ 20%] pymol-cli-0.1.0> tests/test_engine_hardening.py ......................................... [ 43%] pymol-cli-0.1.0> ............. [ 50%] pymol-cli-0.1.0> tests/test_engine_imports.py . [ 50%] pymol-cli-0.1.0> tests/test_lifecycle_current_process_serve.py . [ 51%] pymol-cli-0.1.0> tests/test_lifecycle_gui.py ........ [ 55%] pymol-cli-0.1.0> tests/test_lifecycle_lock.py . [ 56%] pymol-cli-0.1.0> tests/test_lifecycle_paths.py . [ 56%] pymol-cli-0.1.0> tests/test_lifecycle_process.py .... [ 59%] pymol-cli-0.1.0> tests/test_main.py ...... [ 62%] pymol-cli-0.1.0> tests/test_mcp.py ........................ [ 75%] pymol-cli-0.1.0> tests/test_mcp_imports.py . [ 75%] pymol-cli-0.1.0> tests/test_mcp_real_integration.py . [ 76%] pymol-cli-0.1.0> tests/test_rpc_client_server.py ............... [ 84%] pymol-cli-0.1.0> tests/test_rpc_client_timeouts.py .... [ 86%] pymol-cli-0.1.0> tests/test_rpc_descriptor.py ..s... [ 90%] pymol-cli-0.1.0> tests/test_rpc_descriptor_client.py .. [ 91%] pymol-cli-0.1.0> tests/test_rpc_embedded_integration.py ... [ 92%] pymol-cli-0.1.0> tests/test_rpc_framing.py ....... [ 96%] pymol-cli-0.1.0> tests/test_rpc_imports.py . [ 97%] pymol-cli-0.1.0> tests/test_rpc_session.py ..... [100%] pymol-cli-0.1.0> pymol-cli-0.1.0> ======================== 182 passed, 1 skipped in 7.46s ======================== pymol-cli-0.1.0> Finished executing pytestCheckPhase pymol-cli-0.1.0> Running phase: pytestcachePhase pymol-cli-0.1.0> Running phase: pytestRemoveBytecodePhase post-build step Route build to niks3: ok Pushing mulatta/research-skills to https://niks3.mulatta.io time=2026-09-21T21:12:43.589+09:00 level=INFO msg="Uploading 0 paths to niks3.mulatta.io (154 already cached)" time=2026-09-21T21:12:44.231+09:00 level=INFO msg="Upload complete. (1.035s)"