this derivation will be built: /nix/store/jxmrkg9ilx3a7fvvvymlywgr7mn504k0-pymol-cli-0.1.0.drv these 23 paths will be fetched (18.0 MiB download, 75.4 MiB unpacked): /nix/store/5xfzmjb1k0k20cg3avi31d0fg6f819az-ensure-newer-sources-hook /nix/store/nnp532bi2mmpj9l0s3gj62vh2y6b3yw6-pypa-build-hook.sh /nix/store/0ii0ax3i8bybxp2kwmf8h44pmz9a2zws-pypa-install-hook /nix/store/08l53laxz5d5qqdcvvzjaky80d7jxc0r-pytest-check-hook /nix/store/9zwrscsk765px8s4b4gmj9lfb907x60i-python-catch-conflicts-hook /nix/store/75qqijj5k9bdsax8lndm7yh46mpadpga-python-imports-check-hook.sh /nix/store/ar3p57msfdgxranz3d509ggkmjzawz8b-python-namespaces-hook.sh /nix/store/7ym9p109lrzsis9xzmn0pnrbcmifnygm-python-output-dist-hook /nix/store/vc8mfq0jfyrz3bq2l45z5hpw586lfpnh-python-remove-bin-bytecode-hook /nix/store/lbvl786z58313ibmn4idsblr7bryjbmr-python-remove-tests-dir-hook /nix/store/dipmy5g58srkpvmhdg5773kmz1a1y12d-python-runtime-deps-check-hook.sh /nix/store/drlx58a28y5ns5xbl9ak3kd2la0yh6c3-python3.14-build-1.5.1 /nix/store/q5wg97izpbyjvzrr3q4v51kcqp8k2blj-python3.14-editables-0.6 /nix/store/0f1q2jjdccwmijwr1g1wa7dmyljxnr4b-python3.14-hatchling-1.31.0 /nix/store/4i0bzsw6zm130iivaafsxpdiwbyv5bak-python3.14-iniconfig-2.3.0 /nix/store/zf12mi50gi1vksanqdd4jjha6m2276jr-python3.14-installer-1.0.1 /nix/store/18zyp522c811vn5jl4qcygf92nl4zp0b-python3.14-mypy-2.1.0 /nix/store/hgn9k6lxfmg62q6jhk1yvw89pqjzhiwn-python3.14-pyproject-hooks-1.2.0 /nix/store/6aamjai1shjzq2bmg67pfkimd3l9cj76-python3.14-pytest-9.1.1 /nix/store/yvdp6a42zisajasxljy4xwhfd3lmiyp9-python3.14-ruff-0.16.4 /nix/store/p0az8x1sh8mqd0xpmdkii8sj4z8zpbx0-python3.14-trove-classifiers-2026.6.1.19 /nix/store/h4sqkavjbyc4l1kwb4x87j0v00js9d43-python3.14-wheel-0.47.0 /nix/store/nqajilq02sqv48y2ym90vk9x9hc3spc6-wrap-python-hook building '/nix/store/jxmrkg9ilx3a7fvvvymlywgr7mn504k0-pymol-cli-0.1.0.drv' pymol-cli-0.1.0> Sourcing python-remove-tests-dir-hook pymol-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh pymol-cli-0.1.0> Sourcing python-remove-bin-bytecode-hook.sh pymol-cli-0.1.0> Sourcing pypa-build-hook pymol-cli-0.1.0> Using pypaBuildPhase pymol-cli-0.1.0> Sourcing python-runtime-deps-check-hook pymol-cli-0.1.0> Using pythonRuntimeDepsCheckHook pymol-cli-0.1.0> Sourcing pypa-install-hook pymol-cli-0.1.0> Using pypaInstallPhase pymol-cli-0.1.0> Sourcing python-imports-check-hook.sh pymol-cli-0.1.0> Using pythonImportsCheckPhase pymol-cli-0.1.0> Sourcing python-namespaces-hook pymol-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh pymol-cli-0.1.0> Sourcing pytest-check-hook pymol-cli-0.1.0> Using pytestCheckPhase pymol-cli-0.1.0> Using checkPhaseThreadLimitHook pymol-cli-0.1.0> Running phase: unpackPhase pymol-cli-0.1.0> unpacking source archive /nix/store/r674dpqpajrlynm886vcapg2x8fmzrln-pymol-cli pymol-cli-0.1.0> source root is pymol-cli pymol-cli-0.1.0> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "pymol-cli/tests/test_rpc_session.py" pymol-cli-0.1.0> Running phase: patchPhase pymol-cli-0.1.0> Running phase: updateAutotoolsGnuConfigScriptsPhase pymol-cli-0.1.0> Running phase: configurePhase pymol-cli-0.1.0> no configure script, doing nothing pymol-cli-0.1.0> Running phase: buildPhase pymol-cli-0.1.0> Executing pypaBuildPhase pymol-cli-0.1.0> Creating a wheel... pymol-cli-0.1.0> pypa build flags: --no-isolation --outdir dist/ --wheel pymol-cli-0.1.0> * Getting build dependencies for wheel... pymol-cli-0.1.0> * Building wheel... pymol-cli-0.1.0> Successfully built pymol_cli-0.1.0-py3-none-any.whl pymol-cli-0.1.0> Finished creating a wheel... pymol-cli-0.1.0> Finished executing pypaBuildPhase pymol-cli-0.1.0> Running phase: pythonRuntimeDepsCheckHook pymol-cli-0.1.0> Executing pythonRuntimeDepsCheck pymol-cli-0.1.0> Checking runtime dependencies for pymol_cli-0.1.0-py3-none-any.whl pymol-cli-0.1.0> Finished executing pythonRuntimeDepsCheck pymol-cli-0.1.0> Running phase: installPhase pymol-cli-0.1.0> Executing pypaInstallPhase pymol-cli-0.1.0> Successfully installed pymol_cli-0.1.0-py3-none-any.whl pymol-cli-0.1.0> Finished executing pypaInstallPhase pymol-cli-0.1.0> Running phase: pythonOutputDistPhase pymol-cli-0.1.0> Executing pythonOutputDistPhase pymol-cli-0.1.0> Finished executing pythonOutputDistPhase pymol-cli-0.1.0> Running phase: fixupPhase pymol-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0 pymol-cli-0.1.0> checking for references to /build/ in /nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0... pymol-cli-0.1.0> patching script interpreter paths in /nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0 pymol-cli-0.1.0> stripping (with command strip and flags -S -p) in /nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0/lib /nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0/bin pymol-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/2iw5qvpars3aibvc0hknhkdnry5n4fis-pymol-cli-0.1.0-dist pymol-cli-0.1.0> checking for references to /build/ in /nix/store/2iw5qvpars3aibvc0hknhkdnry5n4fis-pymol-cli-0.1.0-dist... pymol-cli-0.1.0> patching script interpreter paths in /nix/store/2iw5qvpars3aibvc0hknhkdnry5n4fis-pymol-cli-0.1.0-dist pymol-cli-0.1.0> Rewriting #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/bin/python3.14 to #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7 pymol-cli-0.1.0> wrapping `/nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0/bin/pymol-cli'... pymol-cli-0.1.0> Rewriting #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/bin/python3.14 to #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7 pymol-cli-0.1.0> wrapping `/nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0/bin/pymol-engine'... pymol-cli-0.1.0> Rewriting #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/bin/python3.14 to #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7 pymol-cli-0.1.0> wrapping `/nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0/bin/pymol-mcp'... pymol-cli-0.1.0> Executing pythonRemoveTestsDir pymol-cli-0.1.0> Finished executing pythonRemoveTestsDir pymol-cli-0.1.0> Running phase: installCheckPhase pymol-cli-0.1.0> setting known thread variables to default: 1 pymol-cli-0.1.0> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 pymol-cli-0.1.0> no Makefile or custom installCheckPhase, doing nothing pymol-cli-0.1.0> Running phase: pythonCatchConflictsPhase pymol-cli-0.1.0> Running phase: pythonRemoveBinBytecodePhase pymol-cli-0.1.0> Running phase: pythonImportsCheckPhase pymol-cli-0.1.0> Executing pythonImportsCheckPhase pymol-cli-0.1.0> Check whether the following modules can be imported: pymol_cli pymol-cli-0.1.0> Running phase: pytestCheckPhase pymol-cli-0.1.0> Executing pytestCheckPhase pymol-cli-0.1.0> 67 files already formatted pymol-cli-0.1.0> All checks passed! pymol-cli-0.1.0> Success: no issues found in 66 source files pymol-cli-0.1.0> setting known thread variables to default: 1 pymol-cli-0.1.0> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 pymol-cli-0.1.0> pytest flags: -m pytest pymol-cli-0.1.0> ============================= test session starts ============================== pymol-cli-0.1.0> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0 pymol-cli-0.1.0> rootdir: /build/pymol-cli pymol-cli-0.1.0> configfile: pyproject.toml pymol-cli-0.1.0> collected 183 items pymol-cli-0.1.0> pymol-cli-0.1.0> tests/test_cli_domain.py .. [ 1%] pymol-cli-0.1.0> tests/test_cli_engine.py ... [ 2%] pymol-cli-0.1.0> tests/test_cli_gui_command.py . [ 3%] pymol-cli-0.1.0> tests/test_cli_hardening.py ..................... [ 14%] pymol-cli-0.1.0> tests/test_engine_current_process.py ........... [ 20%] pymol-cli-0.1.0> tests/test_engine_hardening.py ......................................... [ 43%] pymol-cli-0.1.0> ............. [ 50%] pymol-cli-0.1.0> tests/test_engine_imports.py . [ 50%] pymol-cli-0.1.0> tests/test_lifecycle_current_process_serve.py . [ 51%] pymol-cli-0.1.0> tests/test_lifecycle_gui.py ........ [ 55%] pymol-cli-0.1.0> tests/test_lifecycle_lock.py . [ 56%] pymol-cli-0.1.0> tests/test_lifecycle_paths.py . [ 56%] pymol-cli-0.1.0> tests/test_lifecycle_process.py .... [ 59%] pymol-cli-0.1.0> tests/test_main.py ...... [ 62%] pymol-cli-0.1.0> tests/test_mcp.py ........................ [ 75%] pymol-cli-0.1.0> tests/test_mcp_imports.py . [ 75%] pymol-cli-0.1.0> tests/test_mcp_real_integration.py . [ 76%] pymol-cli-0.1.0> tests/test_rpc_client_server.py ............... [ 84%] pymol-cli-0.1.0> tests/test_rpc_client_timeouts.py .... [ 86%] pymol-cli-0.1.0> tests/test_rpc_descriptor.py ..s... [ 90%] pymol-cli-0.1.0> tests/test_rpc_descriptor_client.py .. [ 91%] pymol-cli-0.1.0> tests/test_rpc_embedded_integration.py ... [ 92%] pymol-cli-0.1.0> tests/test_rpc_framing.py ....... [ 96%] pymol-cli-0.1.0> tests/test_rpc_imports.py . [ 97%] pymol-cli-0.1.0> tests/test_rpc_session.py ..... [100%] pymol-cli-0.1.0> pymol-cli-0.1.0> ======================== 182 passed, 1 skipped in 6.59s ======================== pymol-cli-0.1.0> Finished executing pytestCheckPhase pymol-cli-0.1.0> Running phase: pytestcachePhase pymol-cli-0.1.0> Running phase: pytestRemoveBytecodePhase post-build step Route build to niks3: ok Pushing mulatta/research-skills to https://niks3.mulatta.io time=2026-09-13T19:13:49.798+09:00 level=INFO msg="Uploading 0 paths to niks3.mulatta.io (154 already cached)" time=2026-09-13T19:13:50.288+09:00 level=INFO msg="Upload complete. (601ms)"