this derivation will be built: /nix/store/jxmrkg9ilx3a7fvvvymlywgr7mn504k0-pymol-cli-0.1.0.drv these 23 paths will be fetched (57.4 MiB download, 213.4 MiB unpacked): /nix/store/7nb5xxi3rbmczj5wklchi7bzgyd8918j-glew-2.3.1 /nix/store/z97c70csgzr3fwbfag58r53laik261yk-hdf5-cpp-1.14.6 /nix/store/rq4zb7ncybsadlin1h9p8hp4vl1fwp8k-libaec-1.1.7 /nix/store/rsi3pffd842qr6xv0hsd1x555ig4l2r3-libxcb-image-0.4.1 /nix/store/b6gmajqfp9h9irj4vvmprm6dlzw8v7vh-libxcb-render-util-0.3.10 /nix/store/v27brh509lhmjc6s1x5zgqqj47dbqh5v-libxcb-util-0.4.1 /nix/store/29j9jlmdmlbfkv9v8mqd327f5nh8kh9w-libxcb-wm-0.4.2 /nix/store/9r12aplv87cqmiad6gmqqc53a9rz4dx3-netcdf-4.10.1 /nix/store/vlxm1mcxh4n20sn1pdwhpn1wp93v9k0s-pymol-3.1.0 /nix/store/9xz49hbg8ksaihmbbh7jfhgzmdyvgpvz-python3.14-dbus-python-1.4.0-dev /nix/store/18zyp522c811vn5jl4qcygf92nl4zp0b-python3.14-mypy-2.1.0 /nix/store/r63m9x0yg6i9jm0rvk0qhg2kn9jm7i2j-python3.14-pyqt5-5.15.10 /nix/store/xr4fypnp769v76hh4wqbkgkmbqmsykiv-python3.14-pyqt5-5.15.10-dev /nix/store/8vzppf6gqmd9zn24b7hyxm2xv5k7piax-python3.14-pyqt5-sip-12.17.0 /nix/store/yvdp6a42zisajasxljy4xwhfd3lmiyp9-python3.14-ruff-0.16.4 /nix/store/kx8392586mzsyzg1lfp5gcji4bidbscj-qtbase-5.15.19 /nix/store/ziv4i465mcn645mxx9smn8h891gs0d1b-qtbase-5.15.19-bin /nix/store/3incmc3hff7ww2mvkln7p8wgsbim95z1-qtdeclarative-5.15.19 /nix/store/kxfxx6ah8xrlapb6z0x5ai1x9h0irh41-qtdeclarative-5.15.19-bin /nix/store/4p9fb0hrg89h4qs1sl3hlizvbjp82x9h-qtsvg-5.15.19 /nix/store/4h785sjns59fx375v60d70zdqgpd5291-qtsvg-5.15.19-bin /nix/store/1pq0ayvpfsggk5zg9689f1hsqi7dk08w-qttranslations-5.15.19 /nix/store/d03fc9xkwbby45xf3aa9jrf08lqgk7f7-qtwebchannel-5.15.19 building '/nix/store/jxmrkg9ilx3a7fvvvymlywgr7mn504k0-pymol-cli-0.1.0.drv' pymol-cli-0.1.0> Sourcing python-remove-tests-dir-hook pymol-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh pymol-cli-0.1.0> Sourcing python-remove-bin-bytecode-hook.sh pymol-cli-0.1.0> Sourcing pypa-build-hook pymol-cli-0.1.0> Using pypaBuildPhase pymol-cli-0.1.0> Sourcing python-runtime-deps-check-hook pymol-cli-0.1.0> Using pythonRuntimeDepsCheckHook pymol-cli-0.1.0> Sourcing pypa-install-hook pymol-cli-0.1.0> Using pypaInstallPhase pymol-cli-0.1.0> Sourcing python-imports-check-hook.sh pymol-cli-0.1.0> Using pythonImportsCheckPhase pymol-cli-0.1.0> Sourcing python-namespaces-hook pymol-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh pymol-cli-0.1.0> Sourcing pytest-check-hook pymol-cli-0.1.0> Using pytestCheckPhase pymol-cli-0.1.0> Using checkPhaseThreadLimitHook pymol-cli-0.1.0> Running phase: unpackPhase pymol-cli-0.1.0> unpacking source archive /nix/store/r674dpqpajrlynm886vcapg2x8fmzrln-pymol-cli pymol-cli-0.1.0> source root is pymol-cli pymol-cli-0.1.0> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "pymol-cli/tests/test_rpc_session.py" pymol-cli-0.1.0> Running phase: patchPhase pymol-cli-0.1.0> Running phase: updateAutotoolsGnuConfigScriptsPhase pymol-cli-0.1.0> Running phase: configurePhase pymol-cli-0.1.0> no configure script, doing nothing pymol-cli-0.1.0> Running phase: buildPhase pymol-cli-0.1.0> Executing pypaBuildPhase pymol-cli-0.1.0> Creating a wheel... pymol-cli-0.1.0> pypa build flags: --no-isolation --outdir dist/ --wheel pymol-cli-0.1.0> * Getting build dependencies for wheel... pymol-cli-0.1.0> * Building wheel... pymol-cli-0.1.0> Successfully built pymol_cli-0.1.0-py3-none-any.whl pymol-cli-0.1.0> Finished creating a wheel... pymol-cli-0.1.0> Finished executing pypaBuildPhase pymol-cli-0.1.0> Running phase: pythonRuntimeDepsCheckHook pymol-cli-0.1.0> Executing pythonRuntimeDepsCheck pymol-cli-0.1.0> Checking runtime dependencies for pymol_cli-0.1.0-py3-none-any.whl pymol-cli-0.1.0> Finished executing pythonRuntimeDepsCheck pymol-cli-0.1.0> Running phase: installPhase pymol-cli-0.1.0> Executing pypaInstallPhase pymol-cli-0.1.0> Successfully installed pymol_cli-0.1.0-py3-none-any.whl pymol-cli-0.1.0> Finished executing pypaInstallPhase pymol-cli-0.1.0> Running phase: pythonOutputDistPhase pymol-cli-0.1.0> Executing pythonOutputDistPhase pymol-cli-0.1.0> Finished executing pythonOutputDistPhase pymol-cli-0.1.0> Running phase: fixupPhase pymol-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0 pymol-cli-0.1.0> checking for references to /build/ in /nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0... pymol-cli-0.1.0> patching script interpreter paths in /nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0 pymol-cli-0.1.0> stripping (with command strip and flags -S -p) in /nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0/lib /nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0/bin pymol-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/2iw5qvpars3aibvc0hknhkdnry5n4fis-pymol-cli-0.1.0-dist pymol-cli-0.1.0> checking for references to /build/ in /nix/store/2iw5qvpars3aibvc0hknhkdnry5n4fis-pymol-cli-0.1.0-dist... pymol-cli-0.1.0> patching script interpreter paths in /nix/store/2iw5qvpars3aibvc0hknhkdnry5n4fis-pymol-cli-0.1.0-dist pymol-cli-0.1.0> Rewriting #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/bin/python3.14 to #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7 pymol-cli-0.1.0> wrapping `/nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0/bin/pymol-cli'... pymol-cli-0.1.0> Rewriting #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/bin/python3.14 to #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7 pymol-cli-0.1.0> wrapping `/nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0/bin/pymol-engine'... pymol-cli-0.1.0> Rewriting #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/bin/python3.14 to #!/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7 pymol-cli-0.1.0> wrapping `/nix/store/11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0/bin/pymol-mcp'... pymol-cli-0.1.0> Executing pythonRemoveTestsDir pymol-cli-0.1.0> Finished executing pythonRemoveTestsDir pymol-cli-0.1.0> Running phase: installCheckPhase pymol-cli-0.1.0> setting known thread variables to default: 1 pymol-cli-0.1.0> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 pymol-cli-0.1.0> no Makefile or custom installCheckPhase, doing nothing pymol-cli-0.1.0> Running phase: pythonCatchConflictsPhase pymol-cli-0.1.0> Running phase: pythonRemoveBinBytecodePhase pymol-cli-0.1.0> Running phase: pythonImportsCheckPhase pymol-cli-0.1.0> Executing pythonImportsCheckPhase pymol-cli-0.1.0> Check whether the following modules can be imported: pymol_cli pymol-cli-0.1.0> Running phase: pytestCheckPhase pymol-cli-0.1.0> Executing pytestCheckPhase pymol-cli-0.1.0> 67 files already formatted pymol-cli-0.1.0> All checks passed! pymol-cli-0.1.0> Success: no issues found in 66 source files pymol-cli-0.1.0> setting known thread variables to default: 1 pymol-cli-0.1.0> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 pymol-cli-0.1.0> pytest flags: -m pytest pymol-cli-0.1.0> ============================= test session starts ============================== pymol-cli-0.1.0> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0 pymol-cli-0.1.0> rootdir: /build/pymol-cli pymol-cli-0.1.0> configfile: pyproject.toml pymol-cli-0.1.0> collected 183 items pymol-cli-0.1.0> pymol-cli-0.1.0> tests/test_cli_domain.py .. [ 1%] pymol-cli-0.1.0> tests/test_cli_engine.py ... [ 2%] pymol-cli-0.1.0> tests/test_cli_gui_command.py . [ 3%] pymol-cli-0.1.0> tests/test_cli_hardening.py ..................... [ 14%] pymol-cli-0.1.0> tests/test_engine_current_process.py ........... [ 20%] pymol-cli-0.1.0> tests/test_engine_hardening.py ......................................... [ 43%] pymol-cli-0.1.0> ............. [ 50%] pymol-cli-0.1.0> tests/test_engine_imports.py . [ 50%] pymol-cli-0.1.0> tests/test_lifecycle_current_process_serve.py . [ 51%] pymol-cli-0.1.0> tests/test_lifecycle_gui.py ........ [ 55%] pymol-cli-0.1.0> tests/test_lifecycle_lock.py . [ 56%] pymol-cli-0.1.0> tests/test_lifecycle_paths.py . [ 56%] pymol-cli-0.1.0> tests/test_lifecycle_process.py .... [ 59%] pymol-cli-0.1.0> tests/test_main.py ...... [ 62%] pymol-cli-0.1.0> tests/test_mcp.py ........................ [ 75%] pymol-cli-0.1.0> tests/test_mcp_imports.py . [ 75%] pymol-cli-0.1.0> tests/test_mcp_real_integration.py . [ 76%] pymol-cli-0.1.0> tests/test_rpc_client_server.py ............... [ 84%] pymol-cli-0.1.0> tests/test_rpc_client_timeouts.py .... [ 86%] pymol-cli-0.1.0> tests/test_rpc_descriptor.py ..s... [ 90%] pymol-cli-0.1.0> tests/test_rpc_descriptor_client.py .. [ 91%] pymol-cli-0.1.0> tests/test_rpc_embedded_integration.py ... [ 92%] pymol-cli-0.1.0> tests/test_rpc_framing.py ....... [ 96%] pymol-cli-0.1.0> tests/test_rpc_imports.py . [ 97%] pymol-cli-0.1.0> tests/test_rpc_session.py ..... [100%] pymol-cli-0.1.0> pymol-cli-0.1.0> ======================== 182 passed, 1 skipped in 6.91s ======================== pymol-cli-0.1.0> Finished executing pytestCheckPhase pymol-cli-0.1.0> Running phase: pytestcachePhase pymol-cli-0.1.0> Running phase: pytestRemoveBytecodePhase post-build step Route build to niks3: ok Pushing mulatta/research-skills to https://niks3.mulatta.io time=2026-09-06T19:14:27.376+09:00 level=INFO msg="Uploading 26 paths to niks3.mulatta.io (128 already cached)" time=2026-09-06T19:14:27.376+09:00 level=INFO msg="Uploading 11q3wn2s04i8vcpvvn1shagbhdg2syqv-pymol-cli-0.1.0 (1.2MB)" time=2026-09-06T19:14:27.376+09:00 level=INFO msg="Uploading lqjarzgi1brcshaha16fmw738256xi6d-mariadb-connector-c-3.3.5 (1.3MB)" time=2026-09-06T19:14:27.376+09:00 level=INFO msg="Uploading kx8392586mzsyzg1lfp5gcji4bidbscj-qtbase-5.15.19 (40.9MB)" time=2026-09-06T19:14:27.376+09:00 level=INFO msg="Uploading ziv4i465mcn645mxx9smn8h891gs0d1b-qtbase-5.15.19-bin (4.7MB)" time=2026-09-06T19:14:27.376+09:00 level=INFO msg="Uploading 9xz49hbg8ksaihmbbh7jfhgzmdyvgpvz-python3.14-dbus-python-1.4.0-dev (6.3KB)" time=2026-09-06T19:14:27.376+09:00 level=INFO msg="Uploading xr4fypnp769v76hh4wqbkgkmbqmsykiv-python3.14-pyqt5-5.15.10-dev (952B)" time=2026-09-06T19:14:27.376+09:00 level=INFO msg="Uploading b6gmajqfp9h9irj4vvmprm6dlzw8v7vh-libxcb-render-util-0.3.10 (27.8KB)" time=2026-09-06T19:14:27.376+09:00 level=INFO msg="Uploading kxfxx6ah8xrlapb6z0x5ai1x9h0irh41-qtdeclarative-5.15.19-bin (3.6MB)" time=2026-09-06T19:14:27.377+09:00 level=INFO msg="Uploading 8vzppf6gqmd9zn24b7hyxm2xv5k7piax-python3.14-pyqt5-sip-12.17.0 (224.8KB)" time=2026-09-06T19:14:27.377+09:00 level=INFO msg="Uploading 9r12aplv87cqmiad6gmqqc53a9rz4dx3-netcdf-4.10.1 (2.8MB)" time=2026-09-06T19:14:27.377+09:00 level=INFO msg="Uploading rq4zb7ncybsadlin1h9p8hp4vl1fwp8k-libaec-1.1.7 (226.9KB)" time=2026-09-06T19:14:27.377+09:00 level=INFO msg="Uploading 7nb5xxi3rbmczj5wklchi7bzgyd8918j-glew-2.3.1 (1.2MB)" time=2026-09-06T19:14:27.377+09:00 level=INFO msg="Uploading 4p9fb0hrg89h4qs1sl3hlizvbjp82x9h-qtsvg-5.15.19 (478.5KB)" time=2026-09-06T19:14:27.378+09:00 level=INFO msg="Uploading rsi3pffd842qr6xv0hsd1x555ig4l2r3-libxcb-image-0.4.1 (27.0KB)" time=2026-09-06T19:14:27.377+09:00 level=INFO msg="Uploading 28jfxqfaxg3529ffjs09bz28da0cyxlp-libzip-1.11.4 (265.6KB)" time=2026-09-06T19:14:27.377+09:00 level=INFO msg="Uploading 4h785sjns59fx375v60d70zdqgpd5291-qtsvg-5.15.19-bin (93.0KB)" time=2026-09-06T19:14:27.378+09:00 level=INFO msg="Uploading 29j9jlmdmlbfkv9v8mqd327f5nh8kh9w-libxcb-wm-0.4.2 (111.2KB)" time=2026-09-06T19:14:27.378+09:00 level=INFO msg="Uploading v27brh509lhmjc6s1x5zgqqj47dbqh5v-libxcb-util-0.4.1 (35.5KB)" time=2026-09-06T19:14:27.378+09:00 level=INFO msg="Uploading 25grr6lfqfvrv7dj1drs2g34diqyh11x-libpq-18.6 (501.8KB)" time=2026-09-06T19:14:27.378+09:00 level=INFO msg="Uploading 3incmc3hff7ww2mvkln7p8wgsbim95z1-qtdeclarative-5.15.19 (17.9MB)" time=2026-09-06T19:14:27.378+09:00 level=INFO msg="Uploading d03fc9xkwbby45xf3aa9jrf08lqgk7f7-qtwebchannel-5.15.19 (212.8KB)" time=2026-09-06T19:14:27.379+09:00 level=INFO msg="Uploading z9gg9y3v8pkk06rds1hdsf9nhikkrq6n-python3.14-dbus-python-1.4.0 (691.8KB)" time=2026-09-06T19:14:27.378+09:00 level=INFO msg="Uploading wj6zfk5xjqn27ix9n1adi23bkx4npg2z-libxcb-keysyms-0.4.1 (18.0KB)" time=2026-09-06T19:14:27.380+09:00 level=INFO msg="Uploading z97c70csgzr3fwbfag58r53laik261yk-hdf5-cpp-1.14.6 (5.9MB)" time=2026-09-06T19:14:27.380+09:00 level=INFO msg="Uploading r63m9x0yg6i9jm0rvk0qhg2kn9jm7i2j-python3.14-pyqt5-5.15.10 (26.1MB)" time=2026-09-06T19:14:27.380+09:00 level=INFO msg="Uploading vlxm1mcxh4n20sn1pdwhpn1wp93v9k0s-pymol-3.1.0 (27.0MB)" time=2026-09-06T19:14:30.377+09:00 level=INFO msg="Uploading 27 narinfos" time=2026-09-06T19:14:31.462+09:00 level=INFO msg="Upload complete. (4.551s)"