this derivation will be built:
  /nix/store/kxpxxv4aia3ybbclx53db3zm03i16n0n-pymol-cli-0.1.0.drv
these 26 paths will be fetched (18.0 MiB download, 75.6 MiB unpacked):
  /nix/store/6cp3asyg4mrbfycdqs273ly1q1apsx8w-die-hook
  /nix/store/g8ivybzv5vqivnqivgl51kq2r08k60mf-ensure-newer-sources-hook
  /nix/store/gp08r4dafv9gfnrf3nsgh79fjb3z00kq-make-shell-wrapper-hook
  /nix/store/6km9d4mw66vcs3b5ahd16mv0yhvkagml-pypa-build-hook.sh
  /nix/store/jvhnbby29xq9504w7n9x92fbxz3cb5cl-pypa-install-hook
  /nix/store/9593xkp0zsybpzd4njx00h3bj8g19sa6-pytest-check-hook
  /nix/store/38sy7kvsxr4ihq055ifr4mpg22h3x1rg-python-catch-conflicts-hook
  /nix/store/b9i265hz56bpkv6m3s3mrbqi4pbczckr-python-imports-check-hook.sh
  /nix/store/8lkyxzljzgmh17pvj5q1b0m3ip7kyxza-python-namespaces-hook.sh
  /nix/store/9bmzy4cmbd1pzc4avqwra98j3n222akb-python-output-dist-hook
  /nix/store/yd03vybx1z5cjyhf3mcq46kwifrmr63h-python-remove-bin-bytecode-hook
  /nix/store/rvv5pgs332i82z33vsv5w0rr1mc7h7nh-python-remove-tests-dir-hook
  /nix/store/2178ns4chvd31jdkd0g3y4cqvbjqj7hx-python-runtime-deps-check-hook.sh
  /nix/store/n2nmcli8bb7yzpa3lknf02an5vz3mjz4-python3.14-build-1.5.1
  /nix/store/8j4k6sx4l2rjw3qwpvd2f0vyqwcc2lwx-python3.14-editables-0.6
  /nix/store/f65aslp7280p1acj9v6x4nj35xa1hpb8-python3.14-hatchling-1.31.0
  /nix/store/ybbyi6m6xznmq3qkb9wc9mj99zmpn5j2-python3.14-iniconfig-2.3.0
  /nix/store/5ar0ic9b3jfbmg52vjf58flgkn27p3vi-python3.14-installer-1.0.1
  /nix/store/n17ph4fyhapgnfrf9h8s3sgn06h7kwq2-python3.14-mypy-2.1.0
  /nix/store/42p69z2jmikj72an8i1v8alff309yddg-python3.14-pluggy-1.6.0
  /nix/store/ph010v2j8jnd1gsdhppqvnn25l5zb2js-python3.14-pyproject-hooks-1.2.0
  /nix/store/5srgg0xydsxbp6bkgnkqarw4i8bh40c8-python3.14-pytest-9.1.1
  /nix/store/7gg2jzncxb747nxkxi8nmw7v8912xbli-python3.14-ruff-0.16.3
  /nix/store/s6rahg3fx4ixzxzpf5ld5ybcnpij8l5s-python3.14-trove-classifiers-2026.6.1.19
  /nix/store/31wv1cbxzxf15w5y9rr1fhl7hx6q55np-python3.14-wheel-0.47.0
  /nix/store/n37qbjpp4rrwcz42yqbgpfgrr7l4wn5x-wrap-python-hook
building '/nix/store/kxpxxv4aia3ybbclx53db3zm03i16n0n-pymol-cli-0.1.0.drv'
pymol-cli-0.1.0> Sourcing python-remove-tests-dir-hook
pymol-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh
pymol-cli-0.1.0> Sourcing python-remove-bin-bytecode-hook.sh
pymol-cli-0.1.0> Sourcing pypa-build-hook
pymol-cli-0.1.0> Using pypaBuildPhase
pymol-cli-0.1.0> Sourcing python-runtime-deps-check-hook
pymol-cli-0.1.0> Using pythonRuntimeDepsCheckHook
pymol-cli-0.1.0> Sourcing pypa-install-hook
pymol-cli-0.1.0> Using pypaInstallPhase
pymol-cli-0.1.0> Sourcing python-imports-check-hook.sh
pymol-cli-0.1.0> Using pythonImportsCheckPhase
pymol-cli-0.1.0> Sourcing python-namespaces-hook
pymol-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh
pymol-cli-0.1.0> Sourcing pytest-check-hook
pymol-cli-0.1.0> Using pytestCheckPhase
pymol-cli-0.1.0> Using checkPhaseThreadLimitHook
pymol-cli-0.1.0> Running phase: unpackPhase
pymol-cli-0.1.0> unpacking source archive /nix/store/r674dpqpajrlynm886vcapg2x8fmzrln-pymol-cli
pymol-cli-0.1.0> source root is pymol-cli
pymol-cli-0.1.0> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "pymol-cli/tests/test_rpc_session.py"
pymol-cli-0.1.0> Running phase: patchPhase
pymol-cli-0.1.0> Running phase: updateAutotoolsGnuConfigScriptsPhase
pymol-cli-0.1.0> Running phase: configurePhase
pymol-cli-0.1.0> no configure script, doing nothing
pymol-cli-0.1.0> Running phase: buildPhase
pymol-cli-0.1.0> Executing pypaBuildPhase
pymol-cli-0.1.0> Creating a wheel...
pymol-cli-0.1.0> pypa build flags: --no-isolation --outdir dist/ --wheel
pymol-cli-0.1.0> * Getting build dependencies for wheel...
pymol-cli-0.1.0> * Building wheel...
pymol-cli-0.1.0> Successfully built pymol_cli-0.1.0-py3-none-any.whl
pymol-cli-0.1.0> Finished creating a wheel...
pymol-cli-0.1.0> Finished executing pypaBuildPhase
pymol-cli-0.1.0> Running phase: pythonRuntimeDepsCheckHook
pymol-cli-0.1.0> Executing pythonRuntimeDepsCheck
pymol-cli-0.1.0> Checking runtime dependencies for pymol_cli-0.1.0-py3-none-any.whl
pymol-cli-0.1.0> Finished executing pythonRuntimeDepsCheck
pymol-cli-0.1.0> Running phase: installPhase
pymol-cli-0.1.0> Executing pypaInstallPhase
pymol-cli-0.1.0> Successfully installed pymol_cli-0.1.0-py3-none-any.whl
pymol-cli-0.1.0> Finished executing pypaInstallPhase
pymol-cli-0.1.0> Running phase: pythonOutputDistPhase
pymol-cli-0.1.0> Executing pythonOutputDistPhase
pymol-cli-0.1.0> Finished executing pythonOutputDistPhase
pymol-cli-0.1.0> Running phase: fixupPhase
pymol-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/a0vnk065rfbkiwh0yd1l9s48lk6bs56n-pymol-cli-0.1.0
pymol-cli-0.1.0> checking for references to /build/ in /nix/store/a0vnk065rfbkiwh0yd1l9s48lk6bs56n-pymol-cli-0.1.0...
pymol-cli-0.1.0> patching script interpreter paths in /nix/store/a0vnk065rfbkiwh0yd1l9s48lk6bs56n-pymol-cli-0.1.0
pymol-cli-0.1.0> stripping (with command strip and flags -S -p) in /nix/store/a0vnk065rfbkiwh0yd1l9s48lk6bs56n-pymol-cli-0.1.0/lib /nix/store/a0vnk065rfbkiwh0yd1l9s48lk6bs56n-pymol-cli-0.1.0/bin
pymol-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/dz32kg6p23m27frs6x5bs6ym1k77h0yl-pymol-cli-0.1.0-dist
pymol-cli-0.1.0> checking for references to /build/ in /nix/store/dz32kg6p23m27frs6x5bs6ym1k77h0yl-pymol-cli-0.1.0-dist...
pymol-cli-0.1.0> patching script interpreter paths in /nix/store/dz32kg6p23m27frs6x5bs6ym1k77h0yl-pymol-cli-0.1.0-dist
pymol-cli-0.1.0> Rewriting #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3.14 to #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7
pymol-cli-0.1.0> wrapping `/nix/store/a0vnk065rfbkiwh0yd1l9s48lk6bs56n-pymol-cli-0.1.0/bin/pymol-cli'...
pymol-cli-0.1.0> Rewriting #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3.14 to #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7
pymol-cli-0.1.0> wrapping `/nix/store/a0vnk065rfbkiwh0yd1l9s48lk6bs56n-pymol-cli-0.1.0/bin/pymol-engine'...
pymol-cli-0.1.0> Rewriting #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3.14 to #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7
pymol-cli-0.1.0> wrapping `/nix/store/a0vnk065rfbkiwh0yd1l9s48lk6bs56n-pymol-cli-0.1.0/bin/pymol-mcp'...
pymol-cli-0.1.0> Executing pythonRemoveTestsDir
pymol-cli-0.1.0> Finished executing pythonRemoveTestsDir
pymol-cli-0.1.0> Running phase: installCheckPhase
pymol-cli-0.1.0> setting known thread variables to default: 1
pymol-cli-0.1.0>  OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1
pymol-cli-0.1.0> no Makefile or custom installCheckPhase, doing nothing
pymol-cli-0.1.0> Running phase: pythonCatchConflictsPhase
pymol-cli-0.1.0> Running phase: pythonRemoveBinBytecodePhase
pymol-cli-0.1.0> Running phase: pythonImportsCheckPhase
pymol-cli-0.1.0> Executing pythonImportsCheckPhase
pymol-cli-0.1.0> Check whether the following modules can be imported: pymol_cli
pymol-cli-0.1.0> Running phase: pytestCheckPhase
pymol-cli-0.1.0> Executing pytestCheckPhase
pymol-cli-0.1.0> 67 files already formatted
pymol-cli-0.1.0> All checks passed!
pymol-cli-0.1.0> Success: no issues found in 66 source files
pymol-cli-0.1.0> setting known thread variables to default: 1
pymol-cli-0.1.0>  OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1
pymol-cli-0.1.0> pytest flags: -m pytest
pymol-cli-0.1.0> ============================= test session starts ==============================
pymol-cli-0.1.0> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0
pymol-cli-0.1.0> rootdir: /build/pymol-cli
pymol-cli-0.1.0> configfile: pyproject.toml
pymol-cli-0.1.0> collected 183 items                                                            
pymol-cli-0.1.0> 
pymol-cli-0.1.0> tests/test_cli_domain.py ..                                              [  1%]
pymol-cli-0.1.0> tests/test_cli_engine.py ...                                             [  2%]
pymol-cli-0.1.0> tests/test_cli_gui_command.py .                                          [  3%]
pymol-cli-0.1.0> tests/test_cli_hardening.py .....................                        [ 14%]
pymol-cli-0.1.0> tests/test_engine_current_process.py ...........                         [ 20%]
pymol-cli-0.1.0> tests/test_engine_hardening.py ......................................... [ 43%]
pymol-cli-0.1.0> .............                                                            [ 50%]
pymol-cli-0.1.0> tests/test_engine_imports.py .                                           [ 50%]
pymol-cli-0.1.0> tests/test_lifecycle_current_process_serve.py .                          [ 51%]
pymol-cli-0.1.0> tests/test_lifecycle_gui.py ........                                     [ 55%]
pymol-cli-0.1.0> tests/test_lifecycle_lock.py .                                           [ 56%]
pymol-cli-0.1.0> tests/test_lifecycle_paths.py .                                          [ 56%]
pymol-cli-0.1.0> tests/test_lifecycle_process.py ....                                     [ 59%]
pymol-cli-0.1.0> tests/test_main.py ......                                                [ 62%]
pymol-cli-0.1.0> tests/test_mcp.py ........................                               [ 75%]
pymol-cli-0.1.0> tests/test_mcp_imports.py .                                              [ 75%]
pymol-cli-0.1.0> tests/test_mcp_real_integration.py .                                     [ 76%]
pymol-cli-0.1.0> tests/test_rpc_client_server.py ...............                          [ 84%]
pymol-cli-0.1.0> tests/test_rpc_client_timeouts.py ....                                   [ 86%]
pymol-cli-0.1.0> tests/test_rpc_descriptor.py ..s...                                      [ 90%]
pymol-cli-0.1.0> tests/test_rpc_descriptor_client.py ..                                   [ 91%]
pymol-cli-0.1.0> tests/test_rpc_embedded_integration.py ...                               [ 92%]
pymol-cli-0.1.0> tests/test_rpc_framing.py .......                                        [ 96%]
pymol-cli-0.1.0> tests/test_rpc_imports.py .                                              [ 97%]
pymol-cli-0.1.0> tests/test_rpc_session.py .....                                          [100%]
pymol-cli-0.1.0> 
pymol-cli-0.1.0> ======================== 182 passed, 1 skipped in 6.80s ========================
pymol-cli-0.1.0> Finished executing pytestCheckPhase
pymol-cli-0.1.0> Running phase: pytestcachePhase
pymol-cli-0.1.0> Running phase: pytestRemoveBytecodePhase

post-build step Route build to niks3: ok
Pushing mulatta/research-skills to https://niks3.mulatta.io
time=2026-08-30T19:14:01.819+09:00 level=INFO msg="Uploading 0 paths to niks3.mulatta.io (154 already cached)"
time=2026-08-30T19:14:02.323+09:00 level=INFO msg="Upload complete. (622ms)"