this derivation will be built: /nix/store/vs6z4fq5gj1jc75qaf6ij6xjrgsr1bdk-pymol-cli-0.1.0.drv these 45 paths will be fetched (59.2 MiB download, 222.0 MiB unpacked): /nix/store/g8ivybzv5vqivnqivgl51kq2r08k60mf-ensure-newer-sources-hook /nix/store/415fi6bbjf3m5g6w3bd7cvg2sxwq1sz9-glew-2.3.1 /nix/store/dk2qlzcm2wq8lkjhgyk811y65ycj2cxn-hdf5-cpp-1.14.6 /nix/store/qhkh6ayr7klpm00hg1lmr375j353qjds-libaec-1.1.7 /nix/store/v4x5sq0c9gr63kvnx3623y9ki67r6pgn-libxcb-image-0.4.1 /nix/store/nqivm51jwm26fzcv1g0kzjkp4m5ymbh7-libxcb-render-util-0.3.10 /nix/store/k1f25rlfhw3872rjzlj5gksa3ykr3lqh-libxcb-util-0.4.1 /nix/store/scgdxvnlj3f3j19098bvlz0xzb61hshj-libxcb-wm-0.4.2 /nix/store/199cxnp6zzvl45g7npq7znqfwaxl4n7l-netcdf-4.10.1 /nix/store/kr0hyg2c6hpflc19cpzsfndhj4mlixmr-pymol-3.1.0 /nix/store/6km9d4mw66vcs3b5ahd16mv0yhvkagml-pypa-build-hook.sh /nix/store/jvhnbby29xq9504w7n9x92fbxz3cb5cl-pypa-install-hook /nix/store/9593xkp0zsybpzd4njx00h3bj8g19sa6-pytest-check-hook /nix/store/38sy7kvsxr4ihq055ifr4mpg22h3x1rg-python-catch-conflicts-hook /nix/store/b9i265hz56bpkv6m3s3mrbqi4pbczckr-python-imports-check-hook.sh /nix/store/8lkyxzljzgmh17pvj5q1b0m3ip7kyxza-python-namespaces-hook.sh /nix/store/9bmzy4cmbd1pzc4avqwra98j3n222akb-python-output-dist-hook /nix/store/yd03vybx1z5cjyhf3mcq46kwifrmr63h-python-remove-bin-bytecode-hook /nix/store/rvv5pgs332i82z33vsv5w0rr1mc7h7nh-python-remove-tests-dir-hook /nix/store/2178ns4chvd31jdkd0g3y4cqvbjqj7hx-python-runtime-deps-check-hook.sh /nix/store/n2nmcli8bb7yzpa3lknf02an5vz3mjz4-python3.14-build-1.5.1 /nix/store/60ch5kxfaghacpb8bx3rd45bcc3f6f7q-python3.14-dbus-python-1.4.0-dev /nix/store/8j4k6sx4l2rjw3qwpvd2f0vyqwcc2lwx-python3.14-editables-0.6 /nix/store/f65aslp7280p1acj9v6x4nj35xa1hpb8-python3.14-hatchling-1.31.0 /nix/store/ybbyi6m6xznmq3qkb9wc9mj99zmpn5j2-python3.14-iniconfig-2.3.0 /nix/store/5ar0ic9b3jfbmg52vjf58flgkn27p3vi-python3.14-installer-1.0.1 /nix/store/n17ph4fyhapgnfrf9h8s3sgn06h7kwq2-python3.14-mypy-2.1.0 /nix/store/42p69z2jmikj72an8i1v8alff309yddg-python3.14-pluggy-1.6.0 /nix/store/ph010v2j8jnd1gsdhppqvnn25l5zb2js-python3.14-pyproject-hooks-1.2.0 /nix/store/d9k1vb133h271hd708xamy82ar29r58c-python3.14-pyqt5-5.15.10 /nix/store/xh3m6m5644279gk9wlks5aaj654g6s0z-python3.14-pyqt5-5.15.10-dev /nix/store/rsx8ynfg1hj29dvj5kxsjn4vz5mc30k8-python3.14-pyqt5-sip-12.17.0 /nix/store/5srgg0xydsxbp6bkgnkqarw4i8bh40c8-python3.14-pytest-9.1.1 /nix/store/aj5prhfyzdhrd7fzvm25jjqsgz0ymkdm-python3.14-ruff-0.16.2 /nix/store/s6rahg3fx4ixzxzpf5ld5ybcnpij8l5s-python3.14-trove-classifiers-2026.6.1.19 /nix/store/31wv1cbxzxf15w5y9rr1fhl7hx6q55np-python3.14-wheel-0.47.0 /nix/store/pzc67mkwr2vdhxs92pkgv4syznq2s0xs-qtbase-5.15.19 /nix/store/slpkjlqi33n615dbh32hcz3m5k2ksmmd-qtbase-5.15.19-bin /nix/store/7lj4mrnfq60162y8s9nwnqvna01bzk9n-qtdeclarative-5.15.19 /nix/store/2zcxx0sbw4cmsfc6lczkaq7fjhjdhi5y-qtdeclarative-5.15.19-bin /nix/store/xsw89c48vq60j4nlkxqv1qsm54aks6py-qtsvg-5.15.19 /nix/store/263rl97714460rgad6zxa18l5x2qy22z-qtsvg-5.15.19-bin /nix/store/0cy67awd4mpxk2n82aq92fb27wp213m6-qttranslations-5.15.19 /nix/store/64z6h3iyzy626q755r0b1almhv9521fg-qtwebchannel-5.15.19 /nix/store/n37qbjpp4rrwcz42yqbgpfgrr7l4wn5x-wrap-python-hook building '/nix/store/vs6z4fq5gj1jc75qaf6ij6xjrgsr1bdk-pymol-cli-0.1.0.drv' pymol-cli-0.1.0> Sourcing python-remove-tests-dir-hook pymol-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh pymol-cli-0.1.0> Sourcing python-remove-bin-bytecode-hook.sh pymol-cli-0.1.0> Sourcing pypa-build-hook pymol-cli-0.1.0> Using pypaBuildPhase pymol-cli-0.1.0> Sourcing python-runtime-deps-check-hook pymol-cli-0.1.0> Using pythonRuntimeDepsCheckHook pymol-cli-0.1.0> Sourcing pypa-install-hook pymol-cli-0.1.0> Using pypaInstallPhase pymol-cli-0.1.0> Sourcing python-imports-check-hook.sh pymol-cli-0.1.0> Using pythonImportsCheckPhase pymol-cli-0.1.0> Sourcing python-namespaces-hook pymol-cli-0.1.0> Sourcing python-catch-conflicts-hook.sh pymol-cli-0.1.0> Sourcing pytest-check-hook pymol-cli-0.1.0> Using pytestCheckPhase pymol-cli-0.1.0> Using checkPhaseThreadLimitHook pymol-cli-0.1.0> Running phase: unpackPhase pymol-cli-0.1.0> unpacking source archive /nix/store/r674dpqpajrlynm886vcapg2x8fmzrln-pymol-cli pymol-cli-0.1.0> source root is pymol-cli pymol-cli-0.1.0> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "pymol-cli/tests/test_rpc_session.py" pymol-cli-0.1.0> Running phase: patchPhase pymol-cli-0.1.0> Running phase: updateAutotoolsGnuConfigScriptsPhase pymol-cli-0.1.0> Running phase: configurePhase pymol-cli-0.1.0> no configure script, doing nothing pymol-cli-0.1.0> Running phase: buildPhase pymol-cli-0.1.0> Executing pypaBuildPhase pymol-cli-0.1.0> Creating a wheel... pymol-cli-0.1.0> pypa build flags: --no-isolation --outdir dist/ --wheel pymol-cli-0.1.0> * Getting build dependencies for wheel... pymol-cli-0.1.0> * Building wheel... pymol-cli-0.1.0> Successfully built pymol_cli-0.1.0-py3-none-any.whl pymol-cli-0.1.0> Finished creating a wheel... pymol-cli-0.1.0> Finished executing pypaBuildPhase pymol-cli-0.1.0> Running phase: pythonRuntimeDepsCheckHook pymol-cli-0.1.0> Executing pythonRuntimeDepsCheck pymol-cli-0.1.0> Checking runtime dependencies for pymol_cli-0.1.0-py3-none-any.whl pymol-cli-0.1.0> Finished executing pythonRuntimeDepsCheck pymol-cli-0.1.0> Running phase: installPhase pymol-cli-0.1.0> Executing pypaInstallPhase pymol-cli-0.1.0> Successfully installed pymol_cli-0.1.0-py3-none-any.whl pymol-cli-0.1.0> Finished executing pypaInstallPhase pymol-cli-0.1.0> Running phase: pythonOutputDistPhase pymol-cli-0.1.0> Executing pythonOutputDistPhase pymol-cli-0.1.0> Finished executing pythonOutputDistPhase pymol-cli-0.1.0> Running phase: fixupPhase pymol-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/73q34iw8l5zc3sz2jdwdikhix1hnzd58-pymol-cli-0.1.0 pymol-cli-0.1.0> checking for references to /build/ in /nix/store/73q34iw8l5zc3sz2jdwdikhix1hnzd58-pymol-cli-0.1.0... pymol-cli-0.1.0> patching script interpreter paths in /nix/store/73q34iw8l5zc3sz2jdwdikhix1hnzd58-pymol-cli-0.1.0 pymol-cli-0.1.0> stripping (with command strip and flags -S -p) in /nix/store/73q34iw8l5zc3sz2jdwdikhix1hnzd58-pymol-cli-0.1.0/lib /nix/store/73q34iw8l5zc3sz2jdwdikhix1hnzd58-pymol-cli-0.1.0/bin pymol-cli-0.1.0> shrinking RPATHs of ELF executables and libraries in /nix/store/35kdllzfnk8hg92blzprz2phc7c7k4za-pymol-cli-0.1.0-dist pymol-cli-0.1.0> checking for references to /build/ in /nix/store/35kdllzfnk8hg92blzprz2phc7c7k4za-pymol-cli-0.1.0-dist... pymol-cli-0.1.0> patching script interpreter paths in /nix/store/35kdllzfnk8hg92blzprz2phc7c7k4za-pymol-cli-0.1.0-dist pymol-cli-0.1.0> Rewriting #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3.14 to #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7 pymol-cli-0.1.0> wrapping `/nix/store/73q34iw8l5zc3sz2jdwdikhix1hnzd58-pymol-cli-0.1.0/bin/pymol-cli'... pymol-cli-0.1.0> Rewriting #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3.14 to #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7 pymol-cli-0.1.0> wrapping `/nix/store/73q34iw8l5zc3sz2jdwdikhix1hnzd58-pymol-cli-0.1.0/bin/pymol-engine'... pymol-cli-0.1.0> Rewriting #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3.14 to #!/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7 pymol-cli-0.1.0> wrapping `/nix/store/73q34iw8l5zc3sz2jdwdikhix1hnzd58-pymol-cli-0.1.0/bin/pymol-mcp'... pymol-cli-0.1.0> Executing pythonRemoveTestsDir pymol-cli-0.1.0> Finished executing pythonRemoveTestsDir pymol-cli-0.1.0> Running phase: installCheckPhase pymol-cli-0.1.0> setting known thread variables to default: 1 pymol-cli-0.1.0> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 pymol-cli-0.1.0> no Makefile or custom installCheckPhase, doing nothing pymol-cli-0.1.0> Running phase: pythonCatchConflictsPhase pymol-cli-0.1.0> Running phase: pythonRemoveBinBytecodePhase pymol-cli-0.1.0> Running phase: pythonImportsCheckPhase pymol-cli-0.1.0> Executing pythonImportsCheckPhase pymol-cli-0.1.0> Check whether the following modules can be imported: pymol_cli pymol-cli-0.1.0> Running phase: pytestCheckPhase pymol-cli-0.1.0> Executing pytestCheckPhase pymol-cli-0.1.0> 67 files already formatted pymol-cli-0.1.0> All checks passed! pymol-cli-0.1.0> Success: no issues found in 66 source files pymol-cli-0.1.0> setting known thread variables to default: 1 pymol-cli-0.1.0> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 pymol-cli-0.1.0> pytest flags: -m pytest pymol-cli-0.1.0> ============================= test session starts ============================== pymol-cli-0.1.0> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0 pymol-cli-0.1.0> rootdir: /build/pymol-cli pymol-cli-0.1.0> configfile: pyproject.toml pymol-cli-0.1.0> collected 183 items pymol-cli-0.1.0> pymol-cli-0.1.0> tests/test_cli_domain.py .. [ 1%] pymol-cli-0.1.0> tests/test_cli_engine.py ... [ 2%] pymol-cli-0.1.0> tests/test_cli_gui_command.py . [ 3%] pymol-cli-0.1.0> tests/test_cli_hardening.py ..................... [ 14%] pymol-cli-0.1.0> tests/test_engine_current_process.py ........... [ 20%] pymol-cli-0.1.0> tests/test_engine_hardening.py ......................................... [ 43%] pymol-cli-0.1.0> ............. [ 50%] pymol-cli-0.1.0> tests/test_engine_imports.py . [ 50%] pymol-cli-0.1.0> tests/test_lifecycle_current_process_serve.py . [ 51%] pymol-cli-0.1.0> tests/test_lifecycle_gui.py ........ [ 55%] pymol-cli-0.1.0> tests/test_lifecycle_lock.py . [ 56%] pymol-cli-0.1.0> tests/test_lifecycle_paths.py . [ 56%] pymol-cli-0.1.0> tests/test_lifecycle_process.py .... [ 59%] pymol-cli-0.1.0> tests/test_main.py ...... [ 62%] pymol-cli-0.1.0> tests/test_mcp.py ........................ [ 75%] pymol-cli-0.1.0> tests/test_mcp_imports.py . [ 75%] pymol-cli-0.1.0> tests/test_mcp_real_integration.py . [ 76%] pymol-cli-0.1.0> tests/test_rpc_client_server.py ............... [ 84%] pymol-cli-0.1.0> tests/test_rpc_client_timeouts.py .... [ 86%] pymol-cli-0.1.0> tests/test_rpc_descriptor.py ..s... [ 90%] pymol-cli-0.1.0> tests/test_rpc_descriptor_client.py .. [ 91%] pymol-cli-0.1.0> tests/test_rpc_embedded_integration.py ... [ 92%] pymol-cli-0.1.0> tests/test_rpc_framing.py ....... [ 96%] pymol-cli-0.1.0> tests/test_rpc_imports.py . [ 97%] pymol-cli-0.1.0> tests/test_rpc_session.py ..... [100%] pymol-cli-0.1.0> pymol-cli-0.1.0> ======================== 182 passed, 1 skipped in 6.75s ======================== pymol-cli-0.1.0> Finished executing pytestCheckPhase pymol-cli-0.1.0> Running phase: pytestcachePhase pymol-cli-0.1.0> Running phase: pytestRemoveBytecodePhase post-build step Route build to niks3: ok Pushing mulatta/research-skills to https://niks3.mulatta.io time=2026-08-23T19:14:47.588+09:00 level=INFO msg="Uploading 0 paths to niks3.mulatta.io (154 already cached)" time=2026-08-23T19:14:48.043+09:00 level=INFO msg="Upload complete. (569ms)"