biotite-0.41.2
checks.x86_64-linux.nixos-psi
· build #284
· raw
1Sourcing pyproject-configure-hook2Using pyprojectConfiguredPhase3Sourcing pyproject-wheel-dist-hook4Using pyprojectWheelDist5Sourcing pyproject-install-hook6Using pyprojectInstallPhase
configurePhase
7Executing pyprojectConfigurePhase8Finished executing pyprojectConfigurePhasebuildPhase
9Executing pyprojectWheelDist10Creating dist...11Finished executing pyprojectWheelDistinstallPhase
12Executing pyprojectInstallPhase13warning: Invalid `SSL_CERT_FILE`. Path does not exist: /no-cert-file.crt. No default certificates will be trusted.14Using CPython 3.11.16 interpreter at: /nix/store/yprcwha8bf8cag7kzbsiyfa180vm595w-python3-3.11.16/bin/python3.1115Resolved 1 package in 4ms16Prepared 1 package in 184ms17Installed 1 package in 144ms18Bytecode compiled 169 files in 327ms19 + biotite==0.41.2 (from file:///build/dist/biotite-0.41.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl)20Successfully installed biotite-0.41.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl21Finished executing pyprojectInstallPhasefixupPhase
22shrinking RPATHs of ELF executables and libraries in /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.223shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/multiple.cpython-311-x86_64-linux-gnu.so24shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/kmertable.cpython-311-x86_64-linux-gnu.so25shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/tracetable.cpython-311-x86_64-linux-gnu.so26shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/selector.cpython-311-x86_64-linux-gnu.so27shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/banded.cpython-311-x86_64-linux-gnu.so28shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/pairwise.cpython-311-x86_64-linux-gnu.so29shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/localungapped.cpython-311-x86_64-linux-gnu.so30shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/kmeralphabet.cpython-311-x86_64-linux-gnu.so31shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/kmersimilarity.cpython-311-x86_64-linux-gnu.so32shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/permutation.cpython-311-x86_64-linux-gnu.so33shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/localgapped.cpython-311-x86_64-linux-gnu.so34shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/phylo/upgma.cpython-311-x86_64-linux-gnu.so35shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/phylo/nj.cpython-311-x86_64-linux-gnu.so36shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/phylo/tree.cpython-311-x86_64-linux-gnu.so37shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/codec.cpython-311-x86_64-linux-gnu.so38shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/pdbx/encoding.cpython-311-x86_64-linux-gnu.so39shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/convertarray.cpython-311-x86_64-linux-gnu.so40shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/encode.cpython-311-x86_64-linux-gnu.so41shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/convertfile.cpython-311-x86_64-linux-gnu.so42shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/decode.cpython-311-x86_64-linux-gnu.so43shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/pdb/hybrid36.cpython-311-x86_64-linux-gnu.so44shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/celllist.cpython-311-x86_64-linux-gnu.so45shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/sasa.cpython-311-x86_64-linux-gnu.so46shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/bonds.cpython-311-x86_64-linux-gnu.so47shrinking /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/charges.cpython-311-x86_64-linux-gnu.so48checking for references to /build/ in /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2...49patching script interpreter paths in /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.250automatically fixing dependencies for ELF files51{'add_existing': True,52 'append_rpaths': [PosixPath('/run/opengl-driver/lib')],53 'extra_args': [],54 'ignore_missing': ['*'],55 'keep_libc': False,56 'libs': [PosixPath('/nix/store/8dazs1pi8i8kgvjz0adv31vby25rgwf2-pyproject-hook/lib'),57 PosixPath('/nix/store/yprcwha8bf8cag7kzbsiyfa180vm595w-python3-3.11.16/lib'),58 PosixPath('/nix/store/1gzrn304zbv5gvfwmfw2xdjzdk2lhwjz-pyproject-configure-hook/lib'),59 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/run/opengl-driver/lib142searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/celllist.cpython-311-x86_64-linux-gnu.so143setting RPATH to: /run/opengl-driver/lib144searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/sasa.cpython-311-x86_64-linux-gnu.so145setting RPATH to: /run/opengl-driver/lib146searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/bonds.cpython-311-x86_64-linux-gnu.so147setting RPATH to: /run/opengl-driver/lib148searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/charges.cpython-311-x86_64-linux-gnu.so149setting RPATH to: /run/opengl-driver/lib150searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/pdbx/encoding.cpython-311-x86_64-linux-gnu.so151setting RPATH to: /run/opengl-driver/lib152searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/convertarray.cpython-311-x86_64-linux-gnu.so153setting RPATH to: /run/opengl-driver/lib154searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/encode.cpython-311-x86_64-linux-gnu.so155setting RPATH to: /run/opengl-driver/lib156searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/convertfile.cpython-311-x86_64-linux-gnu.so157setting RPATH to: /run/opengl-driver/lib158searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/decode.cpython-311-x86_64-linux-gnu.so159setting RPATH to: /run/opengl-driver/lib160searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/pdb/hybrid36.cpython-311-x86_64-linux-gnu.so161setting RPATH to: /run/opengl-driver/lib162searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/multiple.cpython-311-x86_64-linux-gnu.so163setting RPATH to: /run/opengl-driver/lib164searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/kmertable.cpython-311-x86_64-linux-gnu.so165 libstdc++.so.6 -> found: /nix/store/0vqb1mcas5j8dv6bhbrshinlgsg6bvgi-gcc-15.3.0-lib/lib166 libgcc_s.so.1 -> found: /nix/store/wi6kaycsa2479qrxv9xy6yg3q5ggfs6j-gcc-15.3.0-libgcc/lib167setting RPATH to: /nix/store/0vqb1mcas5j8dv6bhbrshinlgsg6bvgi-gcc-15.3.0-lib/lib:/nix/store/wi6kaycsa2479qrxv9xy6yg3q5ggfs6j-gcc-15.3.0-libgcc/lib:/run/opengl-driver/lib168searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/tracetable.cpython-311-x86_64-linux-gnu.so169setting RPATH to: /run/opengl-driver/lib170searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/selector.cpython-311-x86_64-linux-gnu.so171setting RPATH to: /run/opengl-driver/lib172searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/banded.cpython-311-x86_64-linux-gnu.so173setting RPATH to: /run/opengl-driver/lib174searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/pairwise.cpython-311-x86_64-linux-gnu.so175setting RPATH to: /run/opengl-driver/lib176searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/localungapped.cpython-311-x86_64-linux-gnu.so177setting RPATH to: /run/opengl-driver/lib178searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/kmeralphabet.cpython-311-x86_64-linux-gnu.so179setting RPATH to: /run/opengl-driver/lib180searching for dependencies of /nix/store/5f97nl7n8nl41qmiswiih638dxchflx5-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/kmersimilarity.cpython-311-x86_64-linux-gnu.so181setting RPATH to: /run/opengl-driver/lib182searching for dependencies of 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