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biotite-0.41.2 checks.x86_64-linux.nixos-psi · build #242 · raw

1Sourcing pyproject-configure-hook2Using pyprojectConfiguredPhase3Sourcing pyproject-wheel-dist-hook4Using pyprojectWheelDist5Sourcing pyproject-install-hook6Using pyprojectInstallPhase
configurePhase
7Executing pyprojectConfigurePhase8Finished executing pyprojectConfigurePhase
buildPhase
9Executing pyprojectWheelDist10Creating dist...11Finished executing pyprojectWheelDist
installPhase
12Executing pyprojectInstallPhase13warning: Invalid `SSL_CERT_FILE`. Path does not exist: /no-cert-file.crt. No default certificates will be trusted.14Using CPython 3.11.15 interpreter at: /nix/store/nwly7hh83885cz8pcipsji0p3vpgw9c6-python3-3.11.15/bin/python3.1115Resolved 1 package in 15ms16Prepared 1 package in 253ms17Installed 1 package in 567ms18Bytecode compiled 169 files in 404ms19 + biotite==0.41.2 (from file:///build/dist/biotite-0.41.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl)20Successfully installed biotite-0.41.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl21Finished executing pyprojectInstallPhase
fixupPhase
22shrinking RPATHs of ELF executables and libraries in /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.223shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/multiple.cpython-311-x86_64-linux-gnu.so24shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/pairwise.cpython-311-x86_64-linux-gnu.so25shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/kmeralphabet.cpython-311-x86_64-linux-gnu.so26shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/selector.cpython-311-x86_64-linux-gnu.so27shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/kmertable.cpython-311-x86_64-linux-gnu.so28shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/localgapped.cpython-311-x86_64-linux-gnu.so29shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/tracetable.cpython-311-x86_64-linux-gnu.so30shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/localungapped.cpython-311-x86_64-linux-gnu.so31shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/banded.cpython-311-x86_64-linux-gnu.so32shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/permutation.cpython-311-x86_64-linux-gnu.so33shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/kmersimilarity.cpython-311-x86_64-linux-gnu.so34shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/phylo/upgma.cpython-311-x86_64-linux-gnu.so35shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/phylo/tree.cpython-311-x86_64-linux-gnu.so36shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/phylo/nj.cpython-311-x86_64-linux-gnu.so37shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/codec.cpython-311-x86_64-linux-gnu.so38shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/pdbx/encoding.cpython-311-x86_64-linux-gnu.so39shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/pdb/hybrid36.cpython-311-x86_64-linux-gnu.so40shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/convertarray.cpython-311-x86_64-linux-gnu.so41shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/encode.cpython-311-x86_64-linux-gnu.so42shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/decode.cpython-311-x86_64-linux-gnu.so43shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/convertfile.cpython-311-x86_64-linux-gnu.so44shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/celllist.cpython-311-x86_64-linux-gnu.so45shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/sasa.cpython-311-x86_64-linux-gnu.so46shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/bonds.cpython-311-x86_64-linux-gnu.so47shrinking /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/charges.cpython-311-x86_64-linux-gnu.so48checking for references to /build/ in /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2...49patching script interpreter paths in /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.250automatically fixing dependencies for ELF files51{'add_existing': True,52 'append_rpaths': [PosixPath('/run/opengl-driver/lib')],53 'extra_args': [],54 'ignore_missing': ['*'],55 'keep_libc': False,56 'libs': [PosixPath('/nix/store/3f26ry6ihwrb91gmzy81vivswgivcrpg-pyproject-hook/lib'),57 PosixPath('/nix/store/nwly7hh83885cz8pcipsji0p3vpgw9c6-python3-3.11.15/lib'),58 PosixPath('/nix/store/9hwy2ijasv5ks0ki6dzc2ji813p6p86a-pyproject-configure-hook/lib'),59 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/nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/celllist.cpython-311-x86_64-linux-gnu.so142setting RPATH to: /run/opengl-driver/lib143searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/sasa.cpython-311-x86_64-linux-gnu.so144setting RPATH to: /run/opengl-driver/lib145searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/bonds.cpython-311-x86_64-linux-gnu.so146setting RPATH to: /run/opengl-driver/lib147searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/charges.cpython-311-x86_64-linux-gnu.so148setting RPATH to: /run/opengl-driver/lib149searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/pdbx/encoding.cpython-311-x86_64-linux-gnu.so150setting RPATH to: /run/opengl-driver/lib151searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/pdb/hybrid36.cpython-311-x86_64-linux-gnu.so152setting RPATH to: /run/opengl-driver/lib153searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/convertarray.cpython-311-x86_64-linux-gnu.so154setting RPATH to: /run/opengl-driver/lib155searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/encode.cpython-311-x86_64-linux-gnu.so156setting RPATH to: /run/opengl-driver/lib157searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/decode.cpython-311-x86_64-linux-gnu.so158setting RPATH to: /run/opengl-driver/lib159searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/structure/io/mmtf/convertfile.cpython-311-x86_64-linux-gnu.so160setting RPATH to: /run/opengl-driver/lib161searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/multiple.cpython-311-x86_64-linux-gnu.so162setting RPATH to: /run/opengl-driver/lib163searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/pairwise.cpython-311-x86_64-linux-gnu.so164setting RPATH to: /run/opengl-driver/lib165searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/kmeralphabet.cpython-311-x86_64-linux-gnu.so166setting RPATH to: /run/opengl-driver/lib167searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/selector.cpython-311-x86_64-linux-gnu.so168setting RPATH to: /run/opengl-driver/lib169searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/kmertable.cpython-311-x86_64-linux-gnu.so170 libstdc++.so.6 -> found: /nix/store/r48746qznwqxxl9qzd8f08ny8mg1dg2y-gcc-15.3.0-lib/lib171 libgcc_s.so.1 -> found: /nix/store/cjgm8gv32xdrjgzbgc0zk2fypiys9ylf-gcc-15.3.0-libgcc/lib172setting RPATH to: /nix/store/r48746qznwqxxl9qzd8f08ny8mg1dg2y-gcc-15.3.0-lib/lib:/nix/store/cjgm8gv32xdrjgzbgc0zk2fypiys9ylf-gcc-15.3.0-libgcc/lib:/run/opengl-driver/lib173searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/localgapped.cpython-311-x86_64-linux-gnu.so174setting RPATH to: /run/opengl-driver/lib175searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/tracetable.cpython-311-x86_64-linux-gnu.so176setting RPATH to: /run/opengl-driver/lib177searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/localungapped.cpython-311-x86_64-linux-gnu.so178setting RPATH to: /run/opengl-driver/lib179searching for dependencies of /nix/store/c02gkd6apxm77rdivmphycipgicy46xg-biotite-0.41.2/lib/python3.11/site-packages/biotite/sequence/align/banded.cpython-311-x86_64-linux-gnu.so180setting RPATH to: /run/opengl-driver/lib181searching for dependencies of 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