these 2 derivations will be built: /nix/store/fwq4dn1838by21yimzgf4xpyfyvvgydx-source.drv /nix/store/8zckqzzwaz67dpfsbnf7npw10lc265qy-structty-0.1.2.drv these 4 paths will be fetched (45.9 MiB download, 126.0 MiB unpacked): /nix/store/jcvvpih1046akxcwh9hdiak5q24jqcf0-cmake-4.4.3 /nix/store/64di19mmmfhkqnyr2vnlbn5gglyyszzg-curl-8.22.0 /nix/store/hm6ihawx1sk1jpsdzb2i4psy2v5p1mhy-git-minimal-2.55.0 /nix/store/grmymzxx22cif3akd47w3iarhjxc4d5i-rhash-1.4.6 building '/nix/store/9gpba1d4m1r8wjmwqnvvyk7bqkcwrxpj-source.drv' source> structuredAttrs is enabled source> exporting https://github.com/steineggerlab/StrucTTY.git (rev refs/tags/0.1.2) into /nix/store/fyycjm7hv1nhyamdgd2jgc64lry42ki7-source source> Initialized empty Git repository in /nix/store/fyycjm7hv1nhyamdgd2jgc64lry42ki7-source/.git/ source> remote: Enumerating objects: 71, done. source> remote: Counting objects: 100% (71/71), done. source> remote: Compressing objects: 100% (68/68), done. source> remote: Total 71 (delta 0), reused 29 (delta 0), pack-reused 0 (from 0) source> Unpacking objects: 100% (71/71), 115.57 KiB | 2.57 MiB/s, done. source> From https://github.com/steineggerlab/StrucTTY source> * tag 0.1.2 -> FETCH_HEAD source> Switched to a new branch 'fetchgit' source> refer to FETCH_HEAD as its original name refs/tags/0.1.2 source> Submodule 'lib/gemmi' (https://github.com/project-gemmi/gemmi.git) registered for path 'lib/gemmi' source> Submodule 'lib/lodepng' (https://github.com/lvandeve/lodepng.git) registered for path 'lib/lodepng' source> Cloning into '/nix/store/fyycjm7hv1nhyamdgd2jgc64lry42ki7-source/lib/gemmi'... source> remote: Enumerating objects: 755, done. source> remote: Counting objects: 100% (755/755), done. source> remote: Compressing objects: 100% (603/603), done. source> remote: Total 755 (delta 151), reused 434 (delta 148), pack-reused 0 (from 0) source> Receiving objects: 100% (755/755), 2.37 MiB | 15.57 MiB/s, done. source> Resolving deltas: 100% (151/151), done. source> Cloning into '/nix/store/fyycjm7hv1nhyamdgd2jgc64lry42ki7-source/lib/lodepng'... source> remote: Enumerating objects: 29, done. source> remote: Counting objects: 100% (29/29), done. source> remote: Compressing objects: 100% (27/27), done. source> remote: Total 29 (delta 7), reused 8 (delta 2), pack-reused 0 (from 0) source> Receiving objects: 100% (29/29), 269.12 KiB | 5.38 MiB/s, done. source> Resolving deltas: 100% (7/7), done. source> remote: Total 0 (delta 0), reused 0 (delta 0), pack-reused 0 (from 0) source> remote: Enumerating objects: 859, done. source> remote: Counting objects: 100% (859/859), done. source> remote: Compressing objects: 100% (451/451), done. source> remote: Total 483 (delta 323), reused 56 (delta 27), pack-reused 0 (from 0) source> Receiving objects: 100% (483/483), 681.46 KiB | 6.55 MiB/s, done. source> Resolving deltas: 100% (323/323), completed with 312 local objects. source> From https://github.com/project-gemmi/gemmi source> * branch 009757b9d3a8c464d501b08677fcb2a86f96a66f -> FETCH_HEAD source> Submodule path 'lib/gemmi': checked out '009757b9d3a8c464d501b08677fcb2a86f96a66f' source> remote: Total 0 (delta 0), reused 0 (delta 0), pack-reused 0 (from 0) source> remote: Enumerating objects: 21, done. source> remote: Counting objects: 100% (21/21), done. source> remote: Compressing objects: 100% (11/11), done. source> remote: Total 11 (delta 10), reused 0 (delta 0), pack-reused 0 (from 0) source> Unpacking objects: 100% (11/11), 2.81 KiB | 89.00 KiB/s, done. source> From https://github.com/lvandeve/lodepng source> * branch c572511174ce6864574acda70cb0cbe9ec39e23b -> FETCH_HEAD source> Submodule path 'lib/lodepng': checked out 'c572511174ce6864574acda70cb0cbe9ec39e23b' source> removing `.git'... building '/nix/store/8zckqzzwaz67dpfsbnf7npw10lc265qy-structty-0.1.2.drv' structty-0.1.2> Running phase: unpackPhase structty-0.1.2> unpacking source archive /nix/store/fyycjm7hv1nhyamdgd2jgc64lry42ki7-source structty-0.1.2> source root is source structty-0.1.2> Running phase: patchPhase structty-0.1.2> Running phase: updateAutotoolsGnuConfigScriptsPhase structty-0.1.2> Running phase: configurePhase structty-0.1.2> cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2/share/doc/StrucTTY -DCMAKE_INSTALL_INFODIR=/nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2/share/man -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2/include -DCMAKE_INSTALL_SBINDIR=/nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2/lib -DCMAKE_STRIP=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/strip -DCMAKE_RANLIB=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/ranlib -DCMAKE_AR=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/ar -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_INSTALL_PREFIX=/nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2 structty-0.1.2> -- The C compiler identification is GNU 16.2.0 structty-0.1.2> -- The CXX compiler identification is GNU 16.2.0 structty-0.1.2> -- Detecting C compiler ABI info structty-0.1.2> -- Detecting C compiler ABI info - done structty-0.1.2> -- Check for working C compiler: /nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/gcc - skipped structty-0.1.2> -- Detecting C compile features structty-0.1.2> -- Detecting C compile features - done structty-0.1.2> -- Detecting CXX compiler ABI info structty-0.1.2> -- Detecting CXX compiler ABI info - done structty-0.1.2> -- Check for working CXX compiler: /nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/g++ - skipped structty-0.1.2> -- Detecting CXX compile features structty-0.1.2> -- Detecting CXX compile features - done structty-0.1.2> -- Found ZLIB: /nix/store/wgw25d181h0qks7qsfp1bh7c5nd3f0s7-zlib-1.3.2/lib/libz.so (found version "1.3.2") structty-0.1.2> -- Configuring done (0.8s) structty-0.1.2> -- Generating done (0.0s) structty-0.1.2> CMake Warning (unused-cli): structty-0.1.2> Manually-specified variables were not used by the project: structty-0.1.2> structty-0.1.2> BUILD_TESTING structty-0.1.2> CMAKE_EXPORT_NO_PACKAGE_REGISTRY structty-0.1.2> structty-0.1.2> structty-0.1.2> -- Build files have been written to: /build/source/build structty-0.1.2> cmake: enabled parallel building structty-0.1.2> cmake: enabled parallel installing structty-0.1.2> Running phase: buildPhase structty-0.1.2> build flags: -j48 SHELL=/nix/store/10dxp0qxqxxsyiljrh2kp0xqhz6arhcx-bash-5.3p15/bin/bash structty-0.1.2> [ 4%] Building CXX object src/render/CMakeFiles/structty_render.dir/AnsiOutput.cpp.o structty-0.1.2> [ 8%] Building CXX object src/render/CMakeFiles/structty_render.dir/Renderer.cpp.o structty-0.1.2> [ 13%] Building CXX object lib/CMakeFiles/lodepng.dir/lodepng/lodepng.cpp.o structty-0.1.2> [ 17%] Linking CXX static library libstructty_render.a structty-0.1.2> [ 17%] Built target structty_render structty-0.1.2> [ 21%] Linking CXX static library liblodepng.a structty-0.1.2> [ 21%] Built target lodepng structty-0.1.2> [ 34%] Building CXX object CMakeFiles/structty.dir/src/utils/Terminal.cpp.o structty-0.1.2> [ 34%] Building CXX object CMakeFiles/structty.dir/src/structure/FoldseekDBReader.cpp.o structty-0.1.2> [ 34%] Building CXX object CMakeFiles/structty.dir/src/structure/Protein.cpp.o structty-0.1.2> [ 39%] Building CXX object CMakeFiles/structty.dir/src/structure/FoldMasonParser.cpp.o structty-0.1.2> [ 47%] Building CXX object CMakeFiles/structty.dir/src/structure/MSAParser.cpp.o structty-0.1.2> [ 47%] Building CXX object CMakeFiles/structty.dir/src/structure/PDBDownloader.cpp.o structty-0.1.2> [ 52%] Building CXX object CMakeFiles/structty.dir/src/structty.cpp.o structty-0.1.2> [ 60%] Building CXX object CMakeFiles/structty.dir/src/structure/MultimerReportParser.cpp.o structty-0.1.2> [ 60%] Building CXX object CMakeFiles/structty.dir/src/structure/FoldseekParser.cpp.o structty-0.1.2> [ 65%] Building CXX object CMakeFiles/structty.dir/src/structure/StructureMaker.cpp.o structty-0.1.2> [ 69%] Building CXX object CMakeFiles/structty.dir/src/structure/Parameters.cpp.o structty-0.1.2> [ 73%] Building CXX object CMakeFiles/structty.dir/src/structure/SSPredictor.cpp.o structty-0.1.2> [ 78%] Building CXX object CMakeFiles/structty.dir/src/visualization/Screen.cpp.o structty-0.1.2> [ 82%] Building CXX object CMakeFiles/structty.dir/src/visualization/Camera.cpp.o structty-0.1.2> [ 86%] Building CXX object CMakeFiles/structty.dir/src/visualization/Panel.cpp.o structty-0.1.2> /build/source/src/utils/Terminal.cpp: In function 'void Terminal::enter_raw_mode()': structty-0.1.2> /build/source/src/utils/Terminal.cpp:70:10: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] structty-0.1.2> 70 | write(STDOUT_FILENO, enable, sizeof(enable) - 1); structty-0.1.2> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ structty-0.1.2> /build/source/src/utils/Terminal.cpp: In function 'void Terminal::do_exit_raw()': structty-0.1.2> /build/source/src/utils/Terminal.cpp:36:10: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] structty-0.1.2> 36 | write(STDOUT_FILENO, disable, sizeof(disable) - 1); structty-0.1.2> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ structty-0.1.2> /build/source/src/utils/Terminal.cpp: In function 'void Terminal::clear()': structty-0.1.2> /build/source/src/utils/Terminal.cpp:93:10: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] structty-0.1.2> 93 | write(STDOUT_FILENO, "\033[2J\033[H", 7); structty-0.1.2> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ structty-0.1.2> /build/source/src/utils/Terminal.cpp: In function 'void Terminal::cursor_home()': structty-0.1.2> /build/source/src/utils/Terminal.cpp:99:10: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] structty-0.1.2> 99 | write(STDOUT_FILENO, "\033[H", 3); structty-0.1.2> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ structty-0.1.2> [ 91%] Linking CXX static library libstructty.a structty-0.1.2> [ 91%] Built target structty structty-0.1.2> [ 95%] Building CXX object CMakeFiles/StrucTTY.dir/src/main.cpp.o structty-0.1.2> [100%] Linking CXX executable StrucTTY structty-0.1.2> [100%] Built target StrucTTY structty-0.1.2> buildPhase completed in 44 seconds structty-0.1.2> Running phase: installPhase structty-0.1.2> Running phase: fixupPhase structty-0.1.2> shrinking RPATHs of ELF executables and libraries in /nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2 structty-0.1.2> shrinking /nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2/bin/StrucTTY structty-0.1.2> checking for references to /build/ in /nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2... structty-0.1.2> patching script interpreter paths in /nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2 structty-0.1.2> stripping (with command strip and flags -S -p) in /nix/store/fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2/bin post-build step Route build to niks3: ok Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org time=2026-10-03T21:14:34.872+09:00 level=INFO msg="Uploading 1 paths to niks3.sjanglab.org (7 already cached)" time=2026-10-03T21:14:34.872+09:00 level=INFO msg="Uploading fld36amib83py23s97wm39n5rgllcbih-structty-0.1.2 (1.1MB)" time=2026-10-03T21:14:35.403+09:00 level=INFO msg="Uploading 1 narinfos" time=2026-10-03T21:14:35.822+09:00 level=INFO msg="Upload complete. (1.101s)"