this derivation will be built:
  /nix/store/mhmkcw5q8abm3v3lp0maasi9nlj8ydk4-python3.14-snapgene-reader-0.1.23.drv
these 32 paths will be fetched (64.1 MiB download, 279.0 MiB unpacked):
  /nix/store/25fsigqyn8wpkjavqf74zcvlcrfzma4c-blas-3
  /nix/store/blynsm1j9bjsld7rqrz0x4zgls7ir989-blas-3-dev
  /nix/store/s7gf99n37i9i8cf3k3b21jrs7vjbrm2v-check-phase-thread-limit-hook
  /nix/store/v5i62bjy7v2gfd7mr5rynf3gkj3ami1p-gfortran-16.2.0-lib
  /nix/store/6m5hc0gdlahnb1w9vnwl39p56amqglw5-gfortran-16.2.0-libgcc
  /nix/store/xpmygb563fgdyk9alcjh92a003v8q9n6-lapack-3
  /nix/store/wvpd158scl36bn937mc1kcr8a560zilh-lapack-3-dev
  /nix/store/7f1lgy62r86pki5gbvsi493rmcrhdd59-openblas-0.3.33
  /nix/store/vr83s1i28fxg01vmmapwhzs93m0nkclq-pypa-build-hook.sh
  /nix/store/5mpfykjfizyf9zid6fy1prg8xqdhgaif-pypa-install-hook
  /nix/store/0s3rk62sq0iqfmvybfpnd6g5895kv7ra-pytest-check-hook
  /nix/store/p8qkp3d39lc1ksn8r3vgrm3pwxcg52gv-python-catch-conflicts-hook
  /nix/store/6kl422hjg95aqcnkrbllw0yzmq4n2c7y-python-imports-check-hook.sh
  /nix/store/z65sv2syk5wvq9p97fdfk87x8zkq835i-python-metadata-check-hook.sh
  /nix/store/k2bpdyx2sjdair9qw3v6dr6i280f77sk-python-namespaces-hook.sh
  /nix/store/4nnwajchjix28pn07ha3j7zqhzz3lv9k-python-remove-tests-dir-hook
  /nix/store/s2z9qcgndqvxr7hjd0nn4lcd1ryakgjq-python-runtime-deps-check-hook.sh
  /nix/store/ds724hf4hk7dsncc4zjjfa8903wzkgzb-python3-3.14.7-env
  /nix/store/kp8m9s48j3nh0djbbwnff70c1873fs0n-python3.14-biopython-1.86
  /nix/store/i4ndg5syrmvch754vlchyhz5chaphkgn-python3.14-build-1.5.1
  /nix/store/2k5fwshdv8vvnqgw8g76h3brm5bkwnmx-python3.14-html2text-2025.4.15
  /nix/store/p1ww6n3nfgl8znfm35xbq0lxv2ik39l0-python3.14-iniconfig-2.3.0
  /nix/store/7hmx221ygq3fzadrym0wqmrckk48g8k6-python3.14-installer-1.0.1
  /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2
  /nix/store/jpx1f0ilwsl2jjzkmqy40lfij433x1s4-python3.14-packaging-26.2
  /nix/store/1i45ky5q5spqfbq64d8gyk5sc5wf85w9-python3.14-pluggy-1.6.0
  /nix/store/p3y2pmgxbk50jfc9pmqhn4gxysn76h1f-python3.14-pyproject-hooks-1.2.0
  /nix/store/v0axk356l7kzmgfdwprgrys2a02l9amk-python3.14-pytest-9.1.1
  /nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0
  /nix/store/gca7xr8pcg4h81qrr5s4y2i8lwxm5q6g-python3.14-wheel-0.47.0
  /nix/store/7lpf1s86kds1fd6svrlkgfrhg1xgn3z9-python3.14-xmltodict-1.0.4
  /nix/store/mpqg9hiira9dc5gkdawd6pna982cwahv-wrap-python-hook
building '/nix/store/mhmkcw5q8abm3v3lp0maasi9nlj8ydk4-python3.14-snapgene-reader-0.1.23.drv'
python3.14-snapgene-reader-0.1.23> Sourcing python-remove-tests-dir-hook
python3.14-snapgene-reader-0.1.23> Sourcing python-catch-conflicts-hook.sh
python3.14-snapgene-reader-0.1.23> Sourcing python-remove-bin-bytecode-hook.sh
python3.14-snapgene-reader-0.1.23> Sourcing pypa-build-hook
python3.14-snapgene-reader-0.1.23> Using pypaBuildPhase
python3.14-snapgene-reader-0.1.23> Sourcing python-runtime-deps-check-hook
python3.14-snapgene-reader-0.1.23> Using pythonRuntimeDepsCheckHook
python3.14-snapgene-reader-0.1.23> Sourcing pypa-install-hook
python3.14-snapgene-reader-0.1.23> Using pypaInstallPhase
python3.14-snapgene-reader-0.1.23> Sourcing python-imports-check-hook.sh
python3.14-snapgene-reader-0.1.23> Using pythonImportsCheckPhase
python3.14-snapgene-reader-0.1.23> Sourcing python-metadata-check-hook.sh
python3.14-snapgene-reader-0.1.23> Using pythonMetadataCheckPhase
python3.14-snapgene-reader-0.1.23> Sourcing python-namespaces-hook
python3.14-snapgene-reader-0.1.23> Sourcing python-catch-conflicts-hook.sh
python3.14-snapgene-reader-0.1.23> Sourcing pytest-check-hook
python3.14-snapgene-reader-0.1.23> Using pytestCheckPhase
python3.14-snapgene-reader-0.1.23> Using checkPhaseThreadLimitHook
python3.14-snapgene-reader-0.1.23> Running phase: unpackPhase
python3.14-snapgene-reader-0.1.23> unpacking source archive /nix/store/ki24qyjvmzxraphqlbnh2hvfgx8d55w0-source
python3.14-snapgene-reader-0.1.23> source root is source
python3.14-snapgene-reader-0.1.23> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/test_samples/test_with_a_single_feature_ie_no_features_list.dna"
python3.14-snapgene-reader-0.1.23> Running phase: patchPhase
python3.14-snapgene-reader-0.1.23> Running phase: updateAutotoolsGnuConfigScriptsPhase
python3.14-snapgene-reader-0.1.23> Running phase: configurePhase
python3.14-snapgene-reader-0.1.23> no configure script, doing nothing
python3.14-snapgene-reader-0.1.23> Running phase: buildPhase
python3.14-snapgene-reader-0.1.23> Executing pypaBuildPhase
python3.14-snapgene-reader-0.1.23> Creating a wheel...
python3.14-snapgene-reader-0.1.23> pypa build flags: --no-isolation --outdir dist/ --wheel
python3.14-snapgene-reader-0.1.23> * Getting build dependencies for wheel...
python3.14-snapgene-reader-0.1.23> running egg_info
python3.14-snapgene-reader-0.1.23> creating snapgene_reader.egg-info
python3.14-snapgene-reader-0.1.23> writing snapgene_reader.egg-info/PKG-INFO
python3.14-snapgene-reader-0.1.23> writing dependency_links to snapgene_reader.egg-info/dependency_links.txt
python3.14-snapgene-reader-0.1.23> writing requirements to snapgene_reader.egg-info/requires.txt
python3.14-snapgene-reader-0.1.23> writing top-level names to snapgene_reader.egg-info/top_level.txt
python3.14-snapgene-reader-0.1.23> writing manifest file 'snapgene_reader.egg-info/SOURCES.txt'
python3.14-snapgene-reader-0.1.23> reading manifest file 'snapgene_reader.egg-info/SOURCES.txt'
python3.14-snapgene-reader-0.1.23> adding license file 'LICENSE'
python3.14-snapgene-reader-0.1.23> writing manifest file 'snapgene_reader.egg-info/SOURCES.txt'
python3.14-snapgene-reader-0.1.23> * Building wheel...
python3.14-snapgene-reader-0.1.23> running bdist_wheel
python3.14-snapgene-reader-0.1.23> running build
python3.14-snapgene-reader-0.1.23> running build_py
python3.14-snapgene-reader-0.1.23> creating build/lib/snapgene_reader
python3.14-snapgene-reader-0.1.23> copying snapgene_reader/__init__.py -> build/lib/snapgene_reader
python3.14-snapgene-reader-0.1.23> copying snapgene_reader/snapgene_reader.py -> build/lib/snapgene_reader
python3.14-snapgene-reader-0.1.23> copying snapgene_reader/version.py -> build/lib/snapgene_reader
python3.14-snapgene-reader-0.1.23> running egg_info
python3.14-snapgene-reader-0.1.23> writing snapgene_reader.egg-info/PKG-INFO
python3.14-snapgene-reader-0.1.23> writing dependency_links to snapgene_reader.egg-info/dependency_links.txt
python3.14-snapgene-reader-0.1.23> writing requirements to snapgene_reader.egg-info/requires.txt
python3.14-snapgene-reader-0.1.23> writing top-level names to snapgene_reader.egg-info/top_level.txt
python3.14-snapgene-reader-0.1.23> reading manifest file 'snapgene_reader.egg-info/SOURCES.txt'
python3.14-snapgene-reader-0.1.23> adding license file 'LICENSE'
python3.14-snapgene-reader-0.1.23> writing manifest file 'snapgene_reader.egg-info/SOURCES.txt'
python3.14-snapgene-reader-0.1.23> installing to build/bdist.linux-x86_64/wheel
python3.14-snapgene-reader-0.1.23> running install
python3.14-snapgene-reader-0.1.23> running install_lib
python3.14-snapgene-reader-0.1.23> creating build/bdist.linux-x86_64/wheel
python3.14-snapgene-reader-0.1.23> creating build/bdist.linux-x86_64/wheel/snapgene_reader
python3.14-snapgene-reader-0.1.23> copying build/lib/snapgene_reader/__init__.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader
python3.14-snapgene-reader-0.1.23> copying build/lib/snapgene_reader/snapgene_reader.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader
python3.14-snapgene-reader-0.1.23> copying build/lib/snapgene_reader/version.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader
python3.14-snapgene-reader-0.1.23> running install_egg_info
python3.14-snapgene-reader-0.1.23> Copying snapgene_reader.egg-info to build/bdist.linux-x86_64/wheel/./snapgene_reader-0.1.23-py3.14.egg-info
python3.14-snapgene-reader-0.1.23> running install_scripts
python3.14-snapgene-reader-0.1.23> creating build/bdist.linux-x86_64/wheel/snapgene_reader-0.1.23.dist-info/WHEEL
python3.14-snapgene-reader-0.1.23> creating '/build/source/dist/.tmp-gf614edp/snapgene_reader-0.1.23-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader/__init__.py'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader/snapgene_reader.py'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader/version.py'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/licenses/LICENSE'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/METADATA'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/WHEEL'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/top_level.txt'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/RECORD'
python3.14-snapgene-reader-0.1.23> removing build/bdist.linux-x86_64/wheel
python3.14-snapgene-reader-0.1.23> Successfully built snapgene_reader-0.1.23-py3-none-any.whl
python3.14-snapgene-reader-0.1.23> Finished creating a wheel...
python3.14-snapgene-reader-0.1.23> Finished executing pypaBuildPhase
python3.14-snapgene-reader-0.1.23> Running phase: pythonRuntimeDepsCheckHook
python3.14-snapgene-reader-0.1.23> Executing pythonRuntimeDepsCheck
python3.14-snapgene-reader-0.1.23> Checking runtime dependencies for snapgene_reader-0.1.23-py3-none-any.whl
python3.14-snapgene-reader-0.1.23> Finished executing pythonRuntimeDepsCheck
python3.14-snapgene-reader-0.1.23> Running phase: installPhase
python3.14-snapgene-reader-0.1.23> Executing pypaInstallPhase
python3.14-snapgene-reader-0.1.23> Successfully installed snapgene_reader-0.1.23-py3-none-any.whl
python3.14-snapgene-reader-0.1.23> Finished executing pypaInstallPhase
python3.14-snapgene-reader-0.1.23> Running phase: pythonOutputDistPhase
python3.14-snapgene-reader-0.1.23> Executing pythonOutputDistPhase
python3.14-snapgene-reader-0.1.23> Finished executing pythonOutputDistPhase
python3.14-snapgene-reader-0.1.23> Running phase: fixupPhase
python3.14-snapgene-reader-0.1.23> shrinking RPATHs of ELF executables and libraries in /nix/store/zha17b2asdprrjbk8013vs2a7lvg5kyz-python3.14-snapgene-reader-0.1.23
python3.14-snapgene-reader-0.1.23> checking for references to /build/ in /nix/store/zha17b2asdprrjbk8013vs2a7lvg5kyz-python3.14-snapgene-reader-0.1.23...
python3.14-snapgene-reader-0.1.23> patching script interpreter paths in /nix/store/zha17b2asdprrjbk8013vs2a7lvg5kyz-python3.14-snapgene-reader-0.1.23
python3.14-snapgene-reader-0.1.23> stripping (with command strip and flags -S -p) in /nix/store/zha17b2asdprrjbk8013vs2a7lvg5kyz-python3.14-snapgene-reader-0.1.23/lib
python3.14-snapgene-reader-0.1.23> shrinking RPATHs of ELF executables and libraries in /nix/store/rcylc5k32p2kms8gdr395z9c856wnpic-python3.14-snapgene-reader-0.1.23-dist
python3.14-snapgene-reader-0.1.23> checking for references to /build/ in /nix/store/rcylc5k32p2kms8gdr395z9c856wnpic-python3.14-snapgene-reader-0.1.23-dist...
python3.14-snapgene-reader-0.1.23> patching script interpreter paths in /nix/store/rcylc5k32p2kms8gdr395z9c856wnpic-python3.14-snapgene-reader-0.1.23-dist
python3.14-snapgene-reader-0.1.23> Executing pythonRemoveTestsDir
python3.14-snapgene-reader-0.1.23> Finished executing pythonRemoveTestsDir
python3.14-snapgene-reader-0.1.23> Running phase: installCheckPhase
python3.14-snapgene-reader-0.1.23> setting known thread variables to default: 1
python3.14-snapgene-reader-0.1.23>  OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1
python3.14-snapgene-reader-0.1.23> no Makefile or custom installCheckPhase, doing nothing
python3.14-snapgene-reader-0.1.23> Running phase: pythonCatchConflictsPhase
python3.14-snapgene-reader-0.1.23> Running phase: pythonRemoveBinBytecodePhase
python3.14-snapgene-reader-0.1.23> Running phase: pythonImportsCheckPhase
python3.14-snapgene-reader-0.1.23> Executing pythonImportsCheckPhase
python3.14-snapgene-reader-0.1.23> Check whether the following modules can be imported: snapgene_reader
python3.14-snapgene-reader-0.1.23> Running phase: pythonMetadataCheckPhase
python3.14-snapgene-reader-0.1.23> Executing pythonMetadataCheckPhase
python3.14-snapgene-reader-0.1.23> Running phase: pytestCheckPhase
python3.14-snapgene-reader-0.1.23> Executing pytestCheckPhase
python3.14-snapgene-reader-0.1.23> setting known thread variables to default: 1
python3.14-snapgene-reader-0.1.23>  OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1
python3.14-snapgene-reader-0.1.23> pytest flags: -m pytest tests
python3.14-snapgene-reader-0.1.23> ============================= test session starts ==============================
python3.14-snapgene-reader-0.1.23> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0
python3.14-snapgene-reader-0.1.23> rootdir: /build/source
python3.14-snapgene-reader-0.1.23> configfile: pyproject.toml
python3.14-snapgene-reader-0.1.23> collected 2 items                                                              
python3.14-snapgene-reader-0.1.23> 
python3.14-snapgene-reader-0.1.23> tests/test_general.py ..                                                 [100%]
python3.14-snapgene-reader-0.1.23> 
python3.14-snapgene-reader-0.1.23> =============================== warnings summary ===============================
python3.14-snapgene-reader-0.1.23> tests/test_general.py::test_snapgene_file_to_gbk
python3.14-snapgene-reader-0.1.23>   /nix/store/kp8m9s48j3nh0djbbwnff70c1873fs0n-python3.14-biopython-1.86/lib/python3.14/site-packages/Bio/GenBank/__init__.py:724: BiopythonParserWarning: negative starting position in feature location '0..4'; setting feature location to None.
python3.14-snapgene-reader-0.1.23>     warnings.warn(
python3.14-snapgene-reader-0.1.23> 
python3.14-snapgene-reader-0.1.23> tests/test_general.py::test_snapgene_file_to_gbk
python3.14-snapgene-reader-0.1.23>   /nix/store/kp8m9s48j3nh0djbbwnff70c1873fs0n-python3.14-biopython-1.86/lib/python3.14/site-packages/Bio/GenBank/__init__.py:724: BiopythonParserWarning: negative starting position in feature location '0..225'; setting feature location to None.
python3.14-snapgene-reader-0.1.23>     warnings.warn(
python3.14-snapgene-reader-0.1.23> 
python3.14-snapgene-reader-0.1.23> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
python3.14-snapgene-reader-0.1.23> ======================== 2 passed, 2 warnings in 0.19s =========================
python3.14-snapgene-reader-0.1.23> Finished executing pytestCheckPhase
python3.14-snapgene-reader-0.1.23> Running phase: pytestcachePhase
python3.14-snapgene-reader-0.1.23> Running phase: pytestRemoveBytecodePhase

post-build step Route build to niks3: ok
Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org
time=2026-10-03T21:13:50.981+09:00 level=INFO msg="Uploading 21 paths to niks3.sjanglab.org (19 already cached)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading blynsm1j9bjsld7rqrz0x4zgls7ir989-blas-3-dev (37.4KB)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading cq65g1vyyiklplv6n2fgrjwxa6b4xfs9-mpdecimal-4.0.1 (224.9KB)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading zha17b2asdprrjbk8013vs2a7lvg5kyz-python3.14-snapgene-reader-0.1.23 (55.2KB)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading wvpd158scl36bn937mc1kcr8a560zilh-lapack-3-dev (1.6MB)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading 328fx8r0jb6l2ai4cli7fhp8g26fbfnh-util-linux-minimal-2.42.3-lib (2.1MB)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading pi2b23y3gv6zgcziwbgnihf8gam1cmlp-libffi-3.8.0 (97.6KB)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading 7lpf1s86kds1fd6svrlkgfrhg1xgn3z9-python3.14-xmltodict-1.0.4 (95.9KB)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading xnam05aa3vc7aqbbdixpwcdb8dpv71xn-readline-8.3p3 (506.6KB)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading 2k5fwshdv8vvnqgw8g76h3brm5bkwnmx-python3.14-html2text-2025.4.15 (267.7KB)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading 67v4318ajiy9ia2wz14hqj7idy5181is-gdbm-1.26-lib (452.6KB)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading 6m5hc0gdlahnb1w9vnwl39p56amqglw5-gfortran-16.2.0-libgcc (197.6KB)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading 25fsigqyn8wpkjavqf74zcvlcrfzma4c-blas-3 (67.4MB)"
time=2026-10-03T21:13:50.982+09:00 level=INFO msg="Uploading vkwq2iap75p0srizppc3jl2j5b1lxpln-xz-5.8.4 (860.7KB)"
time=2026-10-03T21:13:50.983+09:00 level=INFO msg="Uploading 7f1lgy62r86pki5gbvsi493rmcrhdd59-openblas-0.3.33 (33.2MB)"
time=2026-10-03T21:13:50.983+09:00 level=INFO msg="Uploading kp8m9s48j3nh0djbbwnff70c1873fs0n-python3.14-biopython-1.86 (23.6MB)"
time=2026-10-03T21:13:50.984+09:00 level=INFO msg="Uploading n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d (2.0MB)"
time=2026-10-03T21:13:50.984+09:00 level=INFO msg="Uploading v5i62bjy7v2gfd7mr5rynf3gkj3ami1p-gfortran-16.2.0-lib (13.9MB)"
time=2026-10-03T21:13:50.984+09:00 level=INFO msg="Uploading 5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2 (51.6MB)"
time=2026-10-03T21:13:50.985+09:00 level=INFO msg="Uploading zrkqwk0989k5wa1gn3cjb76jfga3d8i3-expat-2.8.5 (339.1KB)"
time=2026-10-03T21:13:50.985+09:00 level=INFO msg="Uploading xpmygb563fgdyk9alcjh92a003v8q9n6-lapack-3 (67.4MB)"
time=2026-10-03T21:13:50.985+09:00 level=INFO msg="Uploading lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7 (136.6MB)"
time=2026-10-03T21:13:53.815+09:00 level=INFO msg="Uploading 40 narinfos"
time=2026-10-03T21:13:54.643+09:00 level=INFO msg="Upload complete. (4.079s)"