these 2 derivations will be built: /nix/store/h52bxsdr37j2yvsmj5cnhya0l4fa65af-source.drv /nix/store/zzfp40jarvk1cajlz1prfz0j5i56is4x-foldmason-4-dd3c235.drv these 5 paths will be fetched (1006.2 KiB download, 2.7 MiB unpacked): /nix/store/plzb49mwsq8443vrzdmyzjsz8fgg97jy-bzip2-1.0.8-dev /nix/store/1m78bd3si0295217a6x63pi8anf2ap6b-openmp-21.1.8 /nix/store/9z73im6fqq16hviaamjl69wqpqc83p5w-openmp-21.1.8-dev /nix/store/wpw9kk7qfndblw2017byjydbqq32sj01-pkg-config-0.29.2 /nix/store/b9izmrfjp0qnnyahdwwrzdwi87s1h179-pkg-config-wrapper-0.29.2 building '/nix/store/6f30yyxfnw5q2z8s4lav2nd2rgnhfzgk-source.drv' source> structuredAttrs is enabled source> source> trying https://github.com/steineggerlab/foldmason/archive/4-dd3c235.tar.gz source> % Total % Received % Xferd Average Speed Time Time Time Current source> Dload Upload Total Spent Left Speed source> source> 0 0 0 0 0 0 0 0 00:01 0 source> 0 0 0 0 0 0 0 0 00:01 0 source> 0 0 0 0 0 0 0 0 00:01 0 source> source> 0 0 0 0 0 0 0 0 00:03 0 source> 100 11.50M 0 11.50M 0 0 2.59M 0 00:04 11.45M source> 100 20.50M 0 20.50M 0 0 3.77M 0 00:05 10.23M source> 100 25.50M 0 25.50M 0 0 4.22M 0 00:06 10.23M source> 100 25.50M 0 25.50M 0 0 4.22M 0 00:06 10.23M source> 100 25.50M 0 25.50M 0 0 4.22M 0 00:06 10.23M source> unpacking source archive /build/download.tar.gz building '/nix/store/zzfp40jarvk1cajlz1prfz0j5i56is4x-foldmason-4-dd3c235.drv' foldmason-4-dd3c235> Using checkPhaseThreadLimitHook foldmason-4-dd3c235> Running phase: unpackPhase foldmason-4-dd3c235> unpacking source archive /nix/store/m71fhyklgn4wx3w8li6pqas83bi0whf7-source foldmason-4-dd3c235> source root is source foldmason-4-dd3c235> Running phase: patchPhase foldmason-4-dd3c235> patching script interpreter paths in lib/foldseek/lib/mmseqs/cmake/xxdi.pl foldmason-4-dd3c235> lib/foldseek/lib/mmseqs/cmake/xxdi.pl: interpreter directive changed from "#!/usr/bin/env perl" to "/nix/store/8g4dmf7l8q1mf9w4wfmlcl8gvdgmhb8v-perl-5.42.3/bin/perl" foldmason-4-dd3c235> Running phase: updateAutotoolsGnuConfigScriptsPhase foldmason-4-dd3c235> Running phase: configurePhase foldmason-4-dd3c235> cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/share/doc/foldseek -DCMAKE_INSTALL_INFODIR=/nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/share/man -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/include -DCMAKE_INSTALL_SBINDIR=/nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/lib -DCMAKE_STRIP=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/strip -DCMAKE_RANLIB=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/ranlib -DCMAKE_AR=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/ar -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_INSTALL_PREFIX=/nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 -DHAVE_AVX2=1 foldmason-4-dd3c235> -- The C compiler identification is GNU 16.2.0 foldmason-4-dd3c235> -- The CXX compiler identification is GNU 16.2.0 foldmason-4-dd3c235> -- Detecting C compiler ABI info foldmason-4-dd3c235> -- Detecting C compiler ABI info - done foldmason-4-dd3c235> -- Check for working C compiler: /nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/gcc - skipped foldmason-4-dd3c235> -- Detecting C compile features foldmason-4-dd3c235> -- Detecting C compile features - done foldmason-4-dd3c235> -- Detecting CXX compiler ABI info foldmason-4-dd3c235> -- Detecting CXX compiler ABI info - done foldmason-4-dd3c235> -- Check for working CXX compiler: /nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/g++ - skipped foldmason-4-dd3c235> -- Detecting CXX compile features foldmason-4-dd3c235> -- Detecting CXX compile features - done foldmason-4-dd3c235> -- Source Directory: /build/source/lib/foldseek/lib/mmseqs foldmason-4-dd3c235> -- Project Directory: /build/source/lib/foldseek/lib/mmseqs foldmason-4-dd3c235> -- Compiler is GNU foldmason-4-dd3c235> -- ZSTD VERSION 1.3.8 foldmason-4-dd3c235> -- xxd not found, using xxdi.pl instead foldmason-4-dd3c235> -- ShellCheck disabled foldmason-4-dd3c235> -- Performing Test HAVE_POSIX_FADVISE foldmason-4-dd3c235> -- Performing Test HAVE_POSIX_FADVISE - Success foldmason-4-dd3c235> -- Performing Test HAVE_POSIX_MADVISE foldmason-4-dd3c235> -- Performing Test HAVE_POSIX_MADVISE - Success foldmason-4-dd3c235> -- Performing Test ATOMIC_NATIVE foldmason-4-dd3c235> -- Performing Test ATOMIC_NATIVE - Success foldmason-4-dd3c235> -- IPS4O sorting works foldmason-4-dd3c235> -- Found ZLIB foldmason-4-dd3c235> -- Performing Test HAVE_ZLIB_CHECK foldmason-4-dd3c235> -- Performing Test HAVE_ZLIB_CHECK - Success foldmason-4-dd3c235> -- ZLIB works foldmason-4-dd3c235> -- Found BZLIB foldmason-4-dd3c235> -- Performing Test HAVE_BZLIB_CHECK foldmason-4-dd3c235> -- Performing Test HAVE_BZLIB_CHECK - Success foldmason-4-dd3c235> -- BZLIB works foldmason-4-dd3c235> -- Found OpenMP foldmason-4-dd3c235> -- xxd not found, using xxdi.pl instead foldmason-4-dd3c235> -- ShellCheck not found foldmason-4-dd3c235> -- Rust Target: x86_64-unknown-linux-gnu foldmason-4-dd3c235> -- Determining required link libraries for target x86_64-unknown-linux-gnu foldmason-4-dd3c235> -- Required static libs for target x86_64-unknown-linux-gnu: gcc_s;util;rt;pthread;m;dl;c foldmason-4-dd3c235> -- Required link flags for target x86_64-unknown-linux-gnu: foldmason-4-dd3c235> -- Found Rust: /nix/store/hr3npzrq9l029s5hf948by203m6qz3lw-rustc-wrapper-1.98.1/bin/rustc (found version "1.98.1") foldmason-4-dd3c235> -- Using Corrosion as a subdirectory foldmason-4-dd3c235> -- Rust Feature: simd_avx2 foldmason-4-dd3c235> -- xxd not found, using xxdi.pl instead foldmason-4-dd3c235> -- ShellCheck not found foldmason-4-dd3c235> -- Configuring done (4.4s) foldmason-4-dd3c235> -- Generating done (0.1s) foldmason-4-dd3c235> CMake Warning (unused-cli): foldmason-4-dd3c235> Manually-specified variables were not used by the project: foldmason-4-dd3c235> foldmason-4-dd3c235> BUILD_TESTING foldmason-4-dd3c235> CMAKE_EXPORT_NO_PACKAGE_REGISTRY foldmason-4-dd3c235> CMAKE_INSTALL_BINDIR foldmason-4-dd3c235> CMAKE_INSTALL_DOCDIR foldmason-4-dd3c235> CMAKE_INSTALL_INCLUDEDIR foldmason-4-dd3c235> CMAKE_INSTALL_INFODIR foldmason-4-dd3c235> CMAKE_INSTALL_LIBEXECDIR foldmason-4-dd3c235> CMAKE_INSTALL_LOCALEDIR foldmason-4-dd3c235> CMAKE_INSTALL_MANDIR foldmason-4-dd3c235> CMAKE_INSTALL_SBINDIR foldmason-4-dd3c235> foldmason-4-dd3c235> foldmason-4-dd3c235> -- Build files have been written to: /build/source/build foldmason-4-dd3c235> cmake: enabled parallel building foldmason-4-dd3c235> cmake: enabled parallel installing foldmason-4-dd3c235> Running phase: buildPhase foldmason-4-dd3c235> build flags: -j48 SHELL=/nix/store/10dxp0qxqxxsyiljrh2kp0xqhz6arhcx-bash-5.3p15/bin/bash foldmason-4-dd3c235> [ 1%] Generating ../generated/easymsa.sh.h foldmason-4-dd3c235> [ 1%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/fse_decompress.c.o foldmason-4-dd3c235> [ 1%] Generating ../generated/vendor_foldmason.js.zst.h foldmason-4-dd3c235> [ 1%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/entropy_common.c.o foldmason-4-dd3c235> [ 1%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o foldmason-4-dd3c235> [ 1%] Building CXX object lib/foldseek/lib/mmseqs/lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o foldmason-4-dd3c235> [ 3%] Built target cargo-prebuild_block_aligner_c foldmason-4-dd3c235> [ 3%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o foldmason-4-dd3c235> [ 3%] Generating ../generated/structureindex.sh.h foldmason-4-dd3c235> [ 3%] Generating ../generated/main_foldmason.js.h foldmason-4-dd3c235> [ 3%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/xxhash.c.o foldmason-4-dd3c235> [ 4%] Generating ../generated/easystructuresearch.sh.h foldmason-4-dd3c235> [ 4%] Generating ../generated/nucleotide.out.h foldmason-4-dd3c235> [ 4%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o foldmason-4-dd3c235> [ 4%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o foldmason-4-dd3c235> [ 5%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o foldmason-4-dd3c235> [ 5%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/fse_compress.c.o foldmason-4-dd3c235> [ 5%] Generating ../generated/blosum62.out.h foldmason-4-dd3c235> [ 5%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_fast.c.o foldmason-4-dd3c235> [ 5%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstdmt_compress.c.o foldmason-4-dd3c235> [ 6%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/hist.c.o foldmason-4-dd3c235> [ 7%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_lazy.c.o foldmason-4-dd3c235> [ 7%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_double_fast.c.o foldmason-4-dd3c235> [ 7%] Building CXX object lib/foldseek/lib/foldcomp/CMakeFiles/foldcomp.dir/src/database_writer.cpp.o foldmason-4-dd3c235> [ 7%] Generating ../generated/structdatabases.sh.h foldmason-4-dd3c235> [ 7%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/huf_compress.c.o foldmason-4-dd3c235> [ 7%] Generating ../generated/structurerbh.sh.h foldmason-4-dd3c235> [ 8%] Generating ../generated/structuresearch.sh.h foldmason-4-dd3c235> [ 8%] Generating ../generated/PAM30.out.h foldmason-4-dd3c235> [ 3%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/zstd_common.c.o foldmason-4-dd3c235> [ 3%] Building C object lib/foldseek/lib/mmseqs/lib/microtar/CMakeFiles/microtar.dir/microtar.c.o foldmason-4-dd3c235> [ 3%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/error_private.c.o foldmason-4-dd3c235> [ 3%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o foldmason-4-dd3c235> [ 11%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_compress.c.o foldmason-4-dd3c235> [ 9%] Generating ../generated/structureiterativesearch.sh.h foldmason-4-dd3c235> [ 9%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/pool.c.o foldmason-4-dd3c235> [ 9%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o foldmason-4-dd3c235> [ 12%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o foldmason-4-dd3c235> [ 12%] Generating ../generated/structureprofile.sh.h foldmason-4-dd3c235> [ 9%] Building C object lib/foldseek/lib/mmseqs/lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o foldmason-4-dd3c235> [ 9%] Building CXX object lib/foldseek/lib/foldcomp/CMakeFiles/foldcomp.dir/src/database_reader.cpp.o foldmason-4-dd3c235> [ 9%] Generating ../generated/structurecluster.sh.h foldmason-4-dd3c235> [ 9%] Building CXX object lib/foldseek/lib/foldcomp/CMakeFiles/foldcomp.dir/src/atom_coordinate.cpp.o foldmason-4-dd3c235> [ 9%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/threading.c.o foldmason-4-dd3c235> [ 12%] Generating ../generated/mat3di.out.h foldmason-4-dd3c235> [ 9%] Generating ../generated/VTML80.out.h foldmason-4-dd3c235> [ 9%] Building CXX object lib/foldseek/lib/mmseqs/lib/tantan/CMakeFiles/tantan.dir/tantan.cpp.o foldmason-4-dd3c235> [ 12%] Building CXX object lib/foldseek/lib/foldcomp/CMakeFiles/foldcomp.dir/src/amino_acid.cpp.o foldmason-4-dd3c235> [ 12%] Generating ../generated/VTML40.out.h foldmason-4-dd3c235> [ 12%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h foldmason-4-dd3c235> [ 12%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h foldmason-4-dd3c235> [ 13%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h foldmason-4-dd3c235> [ 14%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o foldmason-4-dd3c235> [ 15%] Building CXX object lib/foldseek/lib/foldcomp/CMakeFiles/foldcomp.dir/src/discretizer.cpp.o foldmason-4-dd3c235> [ 16%] Linking CXX static library libversion.a foldmason-4-dd3c235> [ 16%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o foldmason-4-dd3c235> [ 16%] Generating ../generated/encoder_weights_3di.kerasify.h foldmason-4-dd3c235> [ 16%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o foldmason-4-dd3c235> [ 16%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_opt.c.o foldmason-4-dd3c235> [ 16%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o foldmason-4-dd3c235> [ 16%] Building CXX object lib/foldseek/lib/foldcomp/CMakeFiles/foldcomp.dir/src/foldcomp.cpp.o foldmason-4-dd3c235> [ 16%] Building CXX object lib/foldseek/lib/foldcomp/CMakeFiles/foldcomp.dir/src/nerf.cpp.o foldmason-4-dd3c235> [ 17%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o foldmason-4-dd3c235> [ 17%] Generating ../generated/libPolished_8.lib.h foldmason-4-dd3c235> [ 17%] Generating ../generated/Library255_may17.lib.h foldmason-4-dd3c235> [ 17%] Generating ../generated/evalue_nn.kerasify.h foldmason-4-dd3c235> [ 17%] Generating ../generated/cs219.lib.h foldmason-4-dd3c235> [ 17%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_ldm.c.o foldmason-4-dd3c235> [ 17%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o foldmason-4-dd3c235> [ 17%] Built target version foldmason-4-dd3c235> [ 17%] Generating ../generated/main.js.h foldmason-4-dd3c235> [ 17%] Generating ../generated/vendor.js.zst.h foldmason-4-dd3c235> [ 17%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/huf_decompress.c.o foldmason-4-dd3c235> [ 18%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress.c.o foldmason-4-dd3c235> [ 19%] Generating ../generated/krona_prelude.html.h foldmason-4-dd3c235> [ 20%] Generating ../generated/makepaddeddb.sh.h foldmason-4-dd3c235> [ 21%] Generating ../generated/result_viz_prelude.html.zst.h foldmason-4-dd3c235> [ 21%] Linking C static library libmicrotar.a foldmason-4-dd3c235> [ 21%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress_block.c.o foldmason-4-dd3c235> [ 22%] Generating ../generated/result2structprofile.sh.h foldmason-4-dd3c235> [ 22%] Generating ../generated/K4000.crf.h foldmason-4-dd3c235> [ 23%] Building CXX object lib/foldseek/lib/foldcomp/CMakeFiles/foldcomp.dir/src/sidechain.cpp.o foldmason-4-dd3c235> [ 23%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o foldmason-4-dd3c235> [ 23%] Built target microtar foldmason-4-dd3c235> [ 24%] Generating ../generated/createstructsubdb.sh.h foldmason-4-dd3c235> /build/source/lib/foldseek/lib/foldcomp/src/database_writer.cpp: In function 'void free_writer(void*)': foldmason-4-dd3c235> /build/source/lib/foldseek/lib/foldcomp/src/database_writer.cpp:65:35: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] foldmason-4-dd3c235> 65 | fprintf(w->index, "%d\t%llu\t%d\n", w->entries[i].id, w->entries[i].offset, (uint32_t)w->entries[i].length); foldmason-4-dd3c235> | ~~~^ ~~~~~~~~~~~~~~~~~~~~ foldmason-4-dd3c235> | | | foldmason-4-dd3c235> | long long unsigned int int64_t {aka long int} foldmason-4-dd3c235> | %lu foldmason-4-dd3c235> [ 24%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_ddict.c.o foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base': foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] foldmason-4-dd3c235> 373 | ret->bound = s->bound; foldmason-4-dd3c235> | ^~ foldmason-4-dd3c235> In function 'new_expr', foldmason-4-dd3c235> inlined from 'base' at /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c:372:19: foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc' foldmason-4-dd3c235> 88 | te_expr *ret = malloc(size); foldmason-4-dd3c235> | ^~~~~~~~~~~~ foldmason-4-dd3c235> In function 'new_expr', foldmason-4-dd3c235> inlined from 'base' at /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19: foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] foldmason-4-dd3c235> 93 | ret->type = type; foldmason-4-dd3c235> | ~~~~~~~~~~^~~~~~ foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc' foldmason-4-dd3c235> 88 | te_expr *ret = malloc(size); foldmason-4-dd3c235> | ^~~~~~~~~~~~ foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base': foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] foldmason-4-dd3c235> 367 | ret->value = s->value; foldmason-4-dd3c235> | ^~ foldmason-4-dd3c235> In function 'new_expr', foldmason-4-dd3c235> inlined from 'base' at /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19: foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc' foldmason-4-dd3c235> 88 | te_expr *ret = malloc(size); foldmason-4-dd3c235> | ^~~~~~~~~~~~ foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base': foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] foldmason-4-dd3c235> 446 | ret->value = NAN; foldmason-4-dd3c235> | ^~ foldmason-4-dd3c235> In function 'new_expr', foldmason-4-dd3c235> inlined from 'base' at /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c:444:19: foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc' foldmason-4-dd3c235> 88 | te_expr *ret = malloc(size); foldmason-4-dd3c235> | ^~~~~~~~~~~~ foldmason-4-dd3c235> [ 24%] Generating ../generated/multimersearch.sh.h foldmason-4-dd3c235> [ 25%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/cover.c.o foldmason-4-dd3c235> [ 25%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/fastcover.c.o foldmason-4-dd3c235> [ 25%] Generating ../generated/easymultimersearch.sh.h foldmason-4-dd3c235> [ 25%] Generating ../generated/easysearch.sh.h foldmason-4-dd3c235> [ 25%] Generating ../generated/multimercluster.sh.h foldmason-4-dd3c235> [ 25%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/divsufsort.c.o foldmason-4-dd3c235> Compiling block_aligner_c v0.4.0 (/build/source/lib/foldseek/lib/block-aligner/c) foldmason-4-dd3c235> [ 25%] Generating ../generated/easymultimercluster.sh.h foldmason-4-dd3c235> [ 25%] Generating ../generated/easycluster.sh.h foldmason-4-dd3c235> [ 25%] Building CXX object lib/foldseek/lib/foldcomp/CMakeFiles/foldcomp.dir/src/torsion_angle.cpp.o foldmason-4-dd3c235> [ 26%] Generating ../generated/easytaxonomy.sh.h foldmason-4-dd3c235> [ 26%] Building CXX object lib/foldseek/lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o foldmason-4-dd3c235> [ 26%] Generating ../generated/easyrbh.sh.h foldmason-4-dd3c235> [ 26%] Linking C static library libtinyexpr.a foldmason-4-dd3c235> [ 26%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/zdict.c.o foldmason-4-dd3c235> [ 27%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_common.c.o foldmason-4-dd3c235> [ 27%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_compress.c.o foldmason-4-dd3c235> [ 28%] Building CXX object lib/foldseek/lib/foldcomp/CMakeFiles/foldcomp.dir/src/utility.cpp.o foldmason-4-dd3c235> [ 28%] Building C object lib/foldseek/lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_decompress.c.o foldmason-4-dd3c235> [ 28%] Generating ../generated/blastp.sh.h foldmason-4-dd3c235> [ 28%] Generating ../generated/blastpgp.sh.h foldmason-4-dd3c235> [ 28%] Built target tinyexpr foldmason-4-dd3c235> [ 29%] Generating ../generated/map.sh.h foldmason-4-dd3c235> [ 29%] Generating ../generated/rbh.sh.h foldmason-4-dd3c235> [ 29%] Generating ../generated/linclust.sh.h foldmason-4-dd3c235> [ 30%] Generating ../generated/clustering.sh.h foldmason-4-dd3c235> [ 30%] Generating ../generated/cascaded_clustering.sh.h foldmason-4-dd3c235> [ 30%] Generating ../generated/update_clustering.sh.h foldmason-4-dd3c235> [ 30%] Generating ../generated/createindex.sh.h foldmason-4-dd3c235> [ 30%] Generating ../generated/searchtargetprofile.sh.h foldmason-4-dd3c235> [ 30%] Generating ../generated/createtaxdb.sh.h foldmason-4-dd3c235> [ 30%] Generating ../generated/translated_search.sh.h foldmason-4-dd3c235> [ 31%] Generating ../generated/taxpercontig.sh.h foldmason-4-dd3c235> [ 31%] Generating ../generated/multihitdb.sh.h foldmason-4-dd3c235> [ 31%] Generating ../generated/multihitsearch.sh.h foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:32:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 32 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: `#[warn(missing_abi)]` on by default foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:39:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 39 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:46:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 46 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:61:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 61 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:68:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 68 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:76:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 76 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:86:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 86 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:97:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 97 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:108:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:119:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:126:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:133:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:140:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:149:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:156:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:163:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:170:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:179:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:186:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:194:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:203:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:210:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:218:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:237:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 237 | pub unsafe extern fn $new_name(query_len: usize, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:246:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:259:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:270:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:288:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:295:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:302:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:309:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:237:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 237 | pub unsafe extern fn $new_name(query_len: usize, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:246:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:259:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:270:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:288:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:295:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:302:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:309:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:237:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 237 | pub unsafe extern fn $new_name(query_len: usize, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:246:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:259:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:270:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:288:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:295:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:302:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:309:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:237:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 237 | pub unsafe extern fn $new_name(query_len: usize, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:246:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:259:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:270:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:288:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:295:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:302:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:309:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> [ 31%] Generating ../generated/taxonomy.sh.h foldmason-4-dd3c235> [ 31%] Generating ../generated/enrich.sh.h foldmason-4-dd3c235> [ 31%] Generating ../generated/searchslicedtargetprofile.sh.h foldmason-4-dd3c235> [ 32%] Generating ../generated/databases.sh.h foldmason-4-dd3c235> [ 32%] Generating ../generated/linsearch.sh.h foldmason-4-dd3c235> [ 32%] Generating ../generated/blastn.sh.h foldmason-4-dd3c235> [ 32%] Generating ../generated/pickconsensusrep.sh.h foldmason-4-dd3c235> [ 33%] Generating ../generated/nucleotide_clustering.sh.h foldmason-4-dd3c235> [ 33%] Generating ../generated/iterativepp.sh.h foldmason-4-dd3c235> [ 33%] Generating ../generated/tsv2exprofiledb.sh.h foldmason-4-dd3c235> [ 33%] Built target foldmason-generated foldmason-4-dd3c235> [ 33%] Built target local-generated foldmason-4-dd3c235> [ 33%] Built target ksw2 foldmason-4-dd3c235> [ 34%] Linking CXX static library libtantan.a foldmason-4-dd3c235> [ 34%] Built target tantan foldmason-4-dd3c235> [ 34%] Built target alp foldmason-4-dd3c235> warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions) foldmason-4-dd3c235> Finished `release` profile [optimized] target(s) in 3.94s foldmason-4-dd3c235> Copying byproducts `libblock_aligner_c.a` to /build/source/build/lib/foldseek foldmason-4-dd3c235> [ 34%] Built target _cargo-build_block_aligner_c foldmason-4-dd3c235> [ 34%] Built target cargo-build_block_aligner_c foldmason-4-dd3c235> [ 34%] Built target generated foldmason-4-dd3c235> [ 34%] Linking CXX static library libfoldcomp.a foldmason-4-dd3c235> [ 34%] Built target foldcomp foldmason-4-dd3c235> [ 35%] Building CXX object lib/foldseek/src/strucclustutils/CMakeFiles/gemmiwrapper.dir/GemmiWrapper.cpp.o foldmason-4-dd3c235> [ 35%] Linking C static library libzstd.a foldmason-4-dd3c235> [ 35%] Built target libzstd_static foldmason-4-dd3c235> [ 36%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o foldmason-4-dd3c235> [ 36%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o foldmason-4-dd3c235> [ 37%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o foldmason-4-dd3c235> [ 37%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o foldmason-4-dd3c235> [ 37%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o foldmason-4-dd3c235> [ 37%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o foldmason-4-dd3c235> [ 37%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o foldmason-4-dd3c235> [ 37%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o foldmason-4-dd3c235> [ 38%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o foldmason-4-dd3c235> [ 38%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o foldmason-4-dd3c235> [ 38%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o foldmason-4-dd3c235> [ 39%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o foldmason-4-dd3c235> [ 39%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Fwbw.cpp.o foldmason-4-dd3c235> [ 39%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o foldmason-4-dd3c235> [ 39%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o foldmason-4-dd3c235> [ 40%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o foldmason-4-dd3c235> [ 41%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o foldmason-4-dd3c235> [ 41%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o foldmason-4-dd3c235> [ 41%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o foldmason-4-dd3c235> [ 42%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o foldmason-4-dd3c235> [ 42%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o foldmason-4-dd3c235> [ 42%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o foldmason-4-dd3c235> [ 42%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o foldmason-4-dd3c235> [ 42%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o foldmason-4-dd3c235> [ 43%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o foldmason-4-dd3c235> [ 43%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o foldmason-4-dd3c235> [ 43%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o foldmason-4-dd3c235> [ 43%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o foldmason-4-dd3c235> [ 43%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/GpuUtil.cpp.o foldmason-4-dd3c235> [ 43%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o foldmason-4-dd3c235> [ 44%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o foldmason-4-dd3c235> [ 44%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o foldmason-4-dd3c235> [ 45%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o foldmason-4-dd3c235> [ 45%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o foldmason-4-dd3c235> [ 45%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o foldmason-4-dd3c235> [ 45%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o foldmason-4-dd3c235> [ 45%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o foldmason-4-dd3c235> [ 46%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o foldmason-4-dd3c235> [ 46%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o foldmason-4-dd3c235> [ 46%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o foldmason-4-dd3c235> [ 47%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o foldmason-4-dd3c235> [ 47%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o foldmason-4-dd3c235> [ 47%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o foldmason-4-dd3c235> [ 47%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o foldmason-4-dd3c235> [ 47%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o foldmason-4-dd3c235> [ 47%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o foldmason-4-dd3c235> [ 48%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o foldmason-4-dd3c235> [ 48%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o foldmason-4-dd3c235> [ 49%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o foldmason-4-dd3c235> [ 49%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o foldmason-4-dd3c235> [ 49%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o foldmason-4-dd3c235> [ 50%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o foldmason-4-dd3c235> [ 50%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o foldmason-4-dd3c235> [ 50%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o foldmason-4-dd3c235> [ 50%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o foldmason-4-dd3c235> [ 51%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o foldmason-4-dd3c235> [ 51%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o foldmason-4-dd3c235> [ 51%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o foldmason-4-dd3c235> [ 51%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o foldmason-4-dd3c235> [ 52%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o foldmason-4-dd3c235> [ 52%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o foldmason-4-dd3c235> [ 52%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o foldmason-4-dd3c235> [ 53%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o foldmason-4-dd3c235> [ 53%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o foldmason-4-dd3c235> [ 53%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o foldmason-4-dd3c235> [ 53%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o foldmason-4-dd3c235> [ 54%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o foldmason-4-dd3c235> [ 54%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o foldmason-4-dd3c235> [ 54%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o foldmason-4-dd3c235> [ 54%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o foldmason-4-dd3c235> [ 55%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o foldmason-4-dd3c235> [ 55%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o foldmason-4-dd3c235> [ 55%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o foldmason-4-dd3c235> [ 56%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o foldmason-4-dd3c235> [ 56%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o foldmason-4-dd3c235> [ 56%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o foldmason-4-dd3c235> [ 56%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o foldmason-4-dd3c235> [ 57%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o foldmason-4-dd3c235> [ 57%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o foldmason-4-dd3c235> [ 57%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o foldmason-4-dd3c235> [ 57%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o foldmason-4-dd3c235> [ 58%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o foldmason-4-dd3c235> [ 58%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o foldmason-4-dd3c235> [ 58%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o foldmason-4-dd3c235> [ 59%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o foldmason-4-dd3c235> [ 59%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o foldmason-4-dd3c235> In file included from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/algorithm:62, foldmason-4-dd3c235> from /build/source/lib/foldseek/lib/mmseqs/lib/simd/simd.h:9, foldmason-4-dd3c235> from /build/source/lib/foldseek/lib/mmseqs/src/commons/CSProfile.h:9, foldmason-4-dd3c235> from /build/source/lib/foldseek/lib/mmseqs/src/commons/CSProfile.cpp:5: foldmason-4-dd3c235> In function 'void std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]', foldmason-4-dd3c235> inlined from 'void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]' at /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/stl_algobase.h:977:21, foldmason-4-dd3c235> inlined from 'void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]' at /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/stl_algobase.h:1008:20, foldmason-4-dd3c235> inlined from 'float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]' at /build/source/lib/foldseek/lib/mmseqs/src/commons/CSProfile.cpp:383:14, foldmason-4-dd3c235> inlined from 'float* CSProfile::computeProfileCs(int, float*, float*, float, float)' at /build/source/lib/foldseek/lib/mmseqs/src/commons/CSProfile.cpp:350:58: foldmason-4-dd3c235> /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/stl_algobase.h:923:18: warning: 'void* __builtin_memset(void*, int, long unsigned int)' specified size between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] foldmason-4-dd3c235> 923 | *__first = __val; foldmason-4-dd3c235> | ~~~~~~~~~^~~~~~~ foldmason-4-dd3c235> In member function 'float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]', foldmason-4-dd3c235> inlined from 'float* CSProfile::computeProfileCs(int, float*, float*, float, float)' at /build/source/lib/foldseek/lib/mmseqs/src/commons/CSProfile.cpp:350:58: foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/src/commons/CSProfile.cpp:383:21: note: destination object allocated here foldmason-4-dd3c235> 383 | std::fill(sums, sums + seqLen, 0.0); foldmason-4-dd3c235> | ^~~~ foldmason-4-dd3c235> [ 59%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o foldmason-4-dd3c235> [ 59%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o foldmason-4-dd3c235> [ 60%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp: In function 'void runFilterOnCpu(Parameters&, BaseMatrix*, int8_t*, DBReader*, DBReader*, SequenceLookup*, bool, DBWriter&, EvalueComputation*, QueryMatcherTaxonomyHook*, int)': foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp:460:19: warning: 'master' construct deprecated since OpenMP 5.1, use 'masked' [-Wdeprecated-openmp] foldmason-4-dd3c235> 460 | #pragma omp master foldmason-4-dd3c235> | ^ foldmason-4-dd3c235> In function 'void std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]', foldmason-4-dd3c235> inlined from 'void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]' at /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/stl_algobase.h:977:21, foldmason-4-dd3c235> inlined from 'void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]' at /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/stl_algobase.h:1008:20, foldmason-4-dd3c235> inlined from 'float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]' at /build/source/lib/foldseek/lib/mmseqs/src/commons/CSProfile.cpp:383:14, foldmason-4-dd3c235> inlined from 'float* CSProfile::computeSequenceCs(unsigned char*, int, float)' at /build/source/lib/foldseek/lib/mmseqs/src/commons/CSProfile.cpp:354:58: foldmason-4-dd3c235> /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/stl_algobase.h:923:18: warning: 'void* __builtin_memset(void*, int, long unsigned int)' specified size between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] foldmason-4-dd3c235> 923 | *__first = __val; foldmason-4-dd3c235> | ~~~~~~~~~^~~~~~~ foldmason-4-dd3c235> In member function 'float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]', foldmason-4-dd3c235> inlined from 'float* CSProfile::computeSequenceCs(unsigned char*, int, float)' at /build/source/lib/foldseek/lib/mmseqs/src/commons/CSProfile.cpp:354:58: foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/src/commons/CSProfile.cpp:383:21: note: destination object allocated here foldmason-4-dd3c235> 383 | std::fill(sums, sums + seqLen, 0.0); foldmason-4-dd3c235> | ^~~~ foldmason-4-dd3c235> [ 60%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o foldmason-4-dd3c235> [ 60%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o foldmason-4-dd3c235> [ 60%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o foldmason-4-dd3c235> [ 61%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o foldmason-4-dd3c235> [ 61%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o foldmason-4-dd3c235> [ 61%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o foldmason-4-dd3c235> [ 62%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o foldmason-4-dd3c235> [ 62%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o foldmason-4-dd3c235> [ 62%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o foldmason-4-dd3c235> [ 62%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o foldmason-4-dd3c235> [ 63%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o foldmason-4-dd3c235> [ 63%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o foldmason-4-dd3c235> [ 63%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o foldmason-4-dd3c235> [ 63%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o foldmason-4-dd3c235> [ 64%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o foldmason-4-dd3c235> [ 64%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o foldmason-4-dd3c235> [ 64%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o foldmason-4-dd3c235> [ 64%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o foldmason-4-dd3c235> [ 65%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o foldmason-4-dd3c235> [ 65%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/gpuserver.cpp.o foldmason-4-dd3c235> [ 65%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o foldmason-4-dd3c235> [ 66%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o foldmason-4-dd3c235> [ 66%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o foldmason-4-dd3c235> [ 66%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o foldmason-4-dd3c235> [ 66%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o foldmason-4-dd3c235> [ 67%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o foldmason-4-dd3c235> [ 67%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o foldmason-4-dd3c235> [ 67%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o foldmason-4-dd3c235> [ 67%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o foldmason-4-dd3c235> [ 68%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o foldmason-4-dd3c235> [ 68%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o foldmason-4-dd3c235> [ 68%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o foldmason-4-dd3c235> [ 69%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o foldmason-4-dd3c235> [ 69%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o foldmason-4-dd3c235> [ 69%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o foldmason-4-dd3c235> [ 69%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o foldmason-4-dd3c235> [ 70%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o foldmason-4-dd3c235> [ 70%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o foldmason-4-dd3c235> In file included from /build/source/lib/foldseek/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp:15: foldmason-4-dd3c235> In destructor 'virtual SubstitutionMatrixProfileStates::~SubstitutionMatrixProfileStates()', foldmason-4-dd3c235> inlined from 'virtual SubstitutionMatrixProfileStates::~SubstitutionMatrixProfileStates()' at /build/source/lib/foldseek/lib/mmseqs/src/commons/SubstitutionMatrixProfileStates.h:90:5, foldmason-4-dd3c235> inlined from 'int prefilterInternal(int, const char**, const Command&, int)' at /build/source/lib/foldseek/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp:579:12: foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/src/commons/SubstitutionMatrixProfileStates.h:90:5: warning: array subscript 'SubstitutionMatrixProfileStates[0]' is partly outside array bounds of 'BaseMatrix [1]' [-Warray-bounds=] foldmason-4-dd3c235> 90 | }; foldmason-4-dd3c235> | ^ foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp: In function 'int prefilterInternal(int, const char**, const Command&, int)': foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp:526:98: note: object of size 160 allocated by 'operator new' foldmason-4-dd3c235> 526 | subMat = new NucleotideMatrix(par.scoringMatrixFile.values.nucleotide().c_str(), 1.0, 0.0); foldmason-4-dd3c235> | ^ foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp:536:99: note: object of size 152 allocated by 'operator new' foldmason-4-dd3c235> 536 | subMat = new SubstitutionMatrix(par.scoringMatrixFile.values.aminoacid().c_str(), 2.0, 0.0); foldmason-4-dd3c235> | ^ foldmason-4-dd3c235> [ 70%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o foldmason-4-dd3c235> [ 70%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o foldmason-4-dd3c235> [ 71%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o foldmason-4-dd3c235> [ 71%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o foldmason-4-dd3c235> [ 71%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o foldmason-4-dd3c235> [ 72%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o foldmason-4-dd3c235> [ 72%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o foldmason-4-dd3c235> [ 72%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o foldmason-4-dd3c235> [ 72%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o foldmason-4-dd3c235> [ 73%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o foldmason-4-dd3c235> [ 73%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o foldmason-4-dd3c235> [ 73%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o foldmason-4-dd3c235> [ 73%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o foldmason-4-dd3c235> [ 74%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o foldmason-4-dd3c235> [ 74%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o foldmason-4-dd3c235> [ 74%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o foldmason-4-dd3c235> [ 75%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/src/util/result2flat.cpp: In function 'int result2flat(int, const char**, const Command&)': foldmason-4-dd3c235> /build/source/lib/foldseek/lib/mmseqs/src/util/result2flat.cpp:65:37: warning: ignoring return value of 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator; size_type = long unsigned int]', declared with attribute 'nodiscard' [-Wunused-result] foldmason-4-dd3c235> 65 | dbKeyBuffer.size(); foldmason-4-dd3c235> | ~~~~~~~~~~~~~~~~^~ foldmason-4-dd3c235> In file included from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/string:58, foldmason-4-dd3c235> from /build/source/lib/foldseek/lib/mmseqs/src/commons/Parameters.h:7, foldmason-4-dd3c235> from /build/source/lib/foldseek/lib/mmseqs/src/util/result2flat.cpp:2: foldmason-4-dd3c235> /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/basic_string.h:1187:7: note: declared here foldmason-4-dd3c235> 1187 | size() const _GLIBCXX_NOEXCEPT foldmason-4-dd3c235> | ^~~~ foldmason-4-dd3c235> [ 75%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o foldmason-4-dd3c235> [ 75%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o foldmason-4-dd3c235> [ 75%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o foldmason-4-dd3c235> [ 75%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o foldmason-4-dd3c235> [ 76%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o foldmason-4-dd3c235> [ 76%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o foldmason-4-dd3c235> [ 76%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o foldmason-4-dd3c235> [ 77%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o foldmason-4-dd3c235> [ 77%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o foldmason-4-dd3c235> [ 77%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o foldmason-4-dd3c235> [ 78%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o foldmason-4-dd3c235> [ 78%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o foldmason-4-dd3c235> [ 78%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o foldmason-4-dd3c235> [ 78%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o foldmason-4-dd3c235> [ 79%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o foldmason-4-dd3c235> [ 79%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o foldmason-4-dd3c235> [ 79%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o foldmason-4-dd3c235> [ 79%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o foldmason-4-dd3c235> [ 80%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o foldmason-4-dd3c235> [ 80%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o foldmason-4-dd3c235> [ 80%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o foldmason-4-dd3c235> [ 81%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o foldmason-4-dd3c235> [ 81%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o foldmason-4-dd3c235> [ 81%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o foldmason-4-dd3c235> [ 81%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o foldmason-4-dd3c235> [ 82%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o foldmason-4-dd3c235> [ 82%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o foldmason-4-dd3c235> [ 82%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o foldmason-4-dd3c235> [ 83%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o foldmason-4-dd3c235> [ 83%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o foldmason-4-dd3c235> [ 83%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o foldmason-4-dd3c235> [ 83%] Building CXX object lib/foldseek/lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o foldmason-4-dd3c235> [ 83%] Linking CXX static library libgemmiwrapper.a foldmason-4-dd3c235> [ 83%] Built target gemmiwrapper foldmason-4-dd3c235> [ 84%] Linking CXX static library libmmseqs-framework.a foldmason-4-dd3c235> [ 84%] Built target mmseqs-framework foldmason-4-dd3c235> [ 84%] Building CXX object lib/foldseek/lib/pulchra/CMakeFiles/pulchra.dir/pulchra.cpp.o foldmason-4-dd3c235> [ 84%] Building CXX object lib/foldseek/lib/3di/CMakeFiles/3di.dir/structureto3diseqdist.cpp.o foldmason-4-dd3c235> [ 84%] Building CXX object lib/foldseek/lib/3di/CMakeFiles/3di.dir/structureto3di.cpp.o foldmason-4-dd3c235> [ 84%] Building CXX object lib/foldseek/lib/tmalign/CMakeFiles/tmalign.dir/affineneedlemanwunsch.cpp.o foldmason-4-dd3c235> [ 85%] Building CXX object lib/foldseek/lib/kerasify/CMakeFiles/kerasify.dir/keras_model.cpp.o foldmason-4-dd3c235> [ 86%] Building CXX object lib/foldseek/lib/tmalign/CMakeFiles/tmalign.dir/TMalign.cpp.o foldmason-4-dd3c235> [ 86%] Linking CXX static library libpulchra.a foldmason-4-dd3c235> [ 86%] Built target pulchra foldmason-4-dd3c235> [ 86%] Linking CXX static library lib3di.a foldmason-4-dd3c235> [ 86%] Built target 3di foldmason-4-dd3c235> [ 86%] Linking CXX static library libkerasify.a foldmason-4-dd3c235> [ 86%] Built target kerasify foldmason-4-dd3c235> [ 86%] Linking CXX static library libtmalign.a foldmason-4-dd3c235> [ 86%] Built target tmalign foldmason-4-dd3c235> [ 86%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/commons/StructureSmithWaterman.cpp.o foldmason-4-dd3c235> [ 86%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/commons/LDDT.cpp.o foldmason-4-dd3c235> [ 87%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/commons/LocalParameters.cpp.o foldmason-4-dd3c235> [ 87%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/structurealign.cpp.o foldmason-4-dd3c235> [ 87%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/EvalueNeuralNet.cpp.o foldmason-4-dd3c235> [ 87%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/commons/TMaligner.cpp.o foldmason-4-dd3c235> [ 89%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/aln2tmscore.cpp.o foldmason-4-dd3c235> [ 89%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/tmalign.cpp.o foldmason-4-dd3c235> [ 89%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/samplemulambda.cpp.o foldmason-4-dd3c235> [ 89%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/convert2pdb.cpp.o foldmason-4-dd3c235> [ 90%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/compressca.cpp.o foldmason-4-dd3c235> [ 91%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/PulchraWrapper.cpp.o foldmason-4-dd3c235> [ 91%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/structureto3didescriptor.cpp.o foldmason-4-dd3c235> [ 91%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/scoremultimer.cpp.o foldmason-4-dd3c235> [ 91%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/structureconvertalis.cpp.o foldmason-4-dd3c235> [ 91%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/structcreatedb.cpp.o foldmason-4-dd3c235> [ 91%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/filtermultimer.cpp.o foldmason-4-dd3c235> [ 92%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/expandmultimer.cpp.o foldmason-4-dd3c235> [ 92%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/createmultimerreport.cpp.o foldmason-4-dd3c235> [ 92%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/structurerescorediagonal.cpp.o foldmason-4-dd3c235> [ 92%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/makepaddeddb.cpp.o foldmason-4-dd3c235> [ 92%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/createstructsubdb.cpp.o foldmason-4-dd3c235> [ 92%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/result2structprofile.cpp.o foldmason-4-dd3c235> [ 93%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/strucclustutils/LoLAlign.cpp.o foldmason-4-dd3c235> [ 93%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/workflow/StructureCluster.cpp.o foldmason-4-dd3c235> [ 93%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/workflow/StructureRbh.cpp.o foldmason-4-dd3c235> [ 94%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/workflow/StructureIndex.cpp.o foldmason-4-dd3c235> [ 94%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/workflow/StructureSearch.cpp.o foldmason-4-dd3c235> [ 94%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/workflow/EasyStructureRbh.cpp.o foldmason-4-dd3c235> [ 94%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/workflow/EasyStructureSearch.cpp.o foldmason-4-dd3c235> [ 95%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/workflow/EasyStructureCluster.cpp.o foldmason-4-dd3c235> [ 95%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/workflow/EasyMultimerSearch.cpp.o foldmason-4-dd3c235> [ 95%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/workflow/MultimerSearch.cpp.o foldmason-4-dd3c235> [ 95%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/workflow/MultimerCluster.cpp.o foldmason-4-dd3c235> [ 95%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/FoldseekBase.cpp.o foldmason-4-dd3c235> [ 96%] Building CXX object lib/foldseek/src/CMakeFiles/foldseek-framework.dir/workflow/EasyMultimerCluster.cpp.o foldmason-4-dd3c235> /build/source/lib/foldseek/src/strucclustutils/structureto3didescriptor.cpp: In function 'int structureto3didescriptor(int, const char**, const Command&)': foldmason-4-dd3c235> /build/source/lib/foldseek/src/strucclustutils/structureto3didescriptor.cpp:62:12: warning: variable 'incorrectFiles' set but not used [-Wunused-but-set-variable=] foldmason-4-dd3c235> 62 | size_t incorrectFiles = 0; foldmason-4-dd3c235> | ^~~~~~~~~~~~~~ foldmason-4-dd3c235> /build/source/lib/foldseek/src/strucclustutils/structureto3didescriptor.cpp:63:12: warning: variable 'toShort' set but not used [-Wunused-but-set-variable=] foldmason-4-dd3c235> 63 | size_t toShort = 0; foldmason-4-dd3c235> | ^~~~~~~ foldmason-4-dd3c235> [ 96%] Linking CXX static library libfoldseek-framework.a foldmason-4-dd3c235> [ 96%] Built target foldseek-framework foldmason-4-dd3c235> [ 96%] Building CXX object src/CMakeFiles/foldmason.dir/commons/FMStructureSmithWaterman.cpp.o foldmason-4-dd3c235> [ 97%] Building CXX object src/CMakeFiles/foldmason.dir/commons/SimpleGotoh.cpp.o foldmason-4-dd3c235> [ 97%] Building CXX object src/CMakeFiles/foldmason.dir/strucclustutils/refinemsa.cpp.o foldmason-4-dd3c235> [ 97%] Building CXX object src/CMakeFiles/foldmason.dir/commons/FoldmasonParameters.cpp.o foldmason-4-dd3c235> [ 97%] Building CXX object src/CMakeFiles/foldmason.dir/workflow/EasyMSA.cpp.o foldmason-4-dd3c235> [ 97%] Building CXX object src/CMakeFiles/foldmason.dir/commons/newick.cpp.o foldmason-4-dd3c235> [ 98%] Building CXX object src/CMakeFiles/foldmason.dir/strucclustutils/structuremsa.cpp.o foldmason-4-dd3c235> [ 98%] Building CXX object src/CMakeFiles/foldmason.dir/commons/MSA.cpp.o foldmason-4-dd3c235> [100%] Building CXX object src/CMakeFiles/foldmason.dir/strucclustutils/msa2lddt.cpp.o foldmason-4-dd3c235> [100%] Building CXX object src/CMakeFiles/foldmason.dir/foldmason.cpp.o foldmason-4-dd3c235> /build/source/src/strucclustutils/structuremsa.cpp: In function 'int structuremsa(int, const char**, const Command&, bool)': foldmason-4-dd3c235> /build/source/src/strucclustutils/structuremsa.cpp:2096:19: warning: 'master' construct deprecated since OpenMP 5.1, use 'masked' [-Wdeprecated-openmp] foldmason-4-dd3c235> 2096 | #pragma omp master foldmason-4-dd3c235> | ^ foldmason-4-dd3c235> /build/source/src/strucclustutils/structuremsa.cpp:2106:19: warning: 'master' construct deprecated since OpenMP 5.1, use 'masked' [-Wdeprecated-openmp] foldmason-4-dd3c235> 2106 | #pragma omp master foldmason-4-dd3c235> | ^ foldmason-4-dd3c235> /build/source/src/strucclustutils/structuremsa.cpp: In function 'Matcher::result_t pairwiseAlignment(unsigned int, Sequence*, Sequence*, Sequence*, Sequence*, int, int, SubstitutionMatrix*, SubstitutionMatrix*, int, float**)': foldmason-4-dd3c235> /build/source/src/strucclustutils/structuremsa.cpp:177:65: warning: argument 1 range [18446744073709551615, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] foldmason-4-dd3c235> 177 | short **target_profile_scores_aa = new short * [alphabetSize]; foldmason-4-dd3c235> | ^ foldmason-4-dd3c235> In file included from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/new_allocator.h:34, foldmason-4-dd3c235> from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/x86_64-unknown-linux-gnu/bits/c++allocator.h:33, foldmason-4-dd3c235> from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/allocator.h:46, foldmason-4-dd3c235> from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/vector:65, foldmason-4-dd3c235> from /build/source/lib/foldseek/lib/mmseqs/src/commons/DBReader.h:11, foldmason-4-dd3c235> from /build/source/lib/foldseek/lib/mmseqs/src/commons/IndexReader.h:4, foldmason-4-dd3c235> from /build/source/lib/foldseek/lib/mmseqs/src/alignment/Alignment.h:4, foldmason-4-dd3c235> from /build/source/src/strucclustutils/structuremsa.cpp:1: foldmason-4-dd3c235> /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/new:102:26: note: in a call to allocation function 'void* operator new [](std::size_t)' declared here foldmason-4-dd3c235> 102 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) foldmason-4-dd3c235> | ^~~~~~~~ foldmason-4-dd3c235> /build/source/src/strucclustutils/structuremsa.cpp:178:66: warning: argument 1 range [18446744073709551615, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] foldmason-4-dd3c235> 178 | short **target_profile_scores_3di = new short * [alphabetSize]; foldmason-4-dd3c235> | ^ foldmason-4-dd3c235> /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/new:102:26: note: in a call to allocation function 'void* operator new [](std::size_t)' declared here foldmason-4-dd3c235> 102 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) foldmason-4-dd3c235> | ^~~~~~~~ foldmason-4-dd3c235> In file included from /nix/store/m38wglsqnh1mrmj2cmqa3pjb6w4yjxdi-glibc-2.44-25-dev/include/string.h:580, foldmason-4-dd3c235> from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/cstring:48, foldmason-4-dd3c235> from /build/source/lib/foldseek/lib/mmseqs/src/commons/MultiParam.h:10, foldmason-4-dd3c235> from /build/source/lib/foldseek/lib/mmseqs/src/commons/Parameters.h:16, foldmason-4-dd3c235> from /build/source/lib/foldseek/lib/mmseqs/src/commons/Sequence.h:10, foldmason-4-dd3c235> from /build/source/lib/foldseek/lib/mmseqs/src/commons/DBReader.h:13: foldmason-4-dd3c235> In function 'void* memset(void*, int, size_t)', foldmason-4-dd3c235> inlined from '_Z12structuremsaiPPKcRK7Commandb._omp_fn.0' at /build/source/src/strucclustutils/structuremsa.cpp:1952:27: foldmason-4-dd3c235> /nix/store/m38wglsqnh1mrmj2cmqa3pjb6w4yjxdi-glibc-2.44-25-dev/include/bits/string_fortified.h:59:33: warning: 'void* __builtin_memset(void*, int, long unsigned int)' specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] foldmason-4-dd3c235> 59 | return __builtin___memset_chk (__dest, __ch, __len, foldmason-4-dd3c235> | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ foldmason-4-dd3c235> 60 | __glibc_objsize0 (__dest)); foldmason-4-dd3c235> | ~~~~~~~~~~~~~~~~~~~~~~~~~~ foldmason-4-dd3c235> In function 'void* memset(void*, int, size_t)', foldmason-4-dd3c235> inlined from '_Z12structuremsaiPPKcRK7Commandb._omp_fn.0' at /build/source/src/strucclustutils/structuremsa.cpp:1953:27: foldmason-4-dd3c235> /nix/store/m38wglsqnh1mrmj2cmqa3pjb6w4yjxdi-glibc-2.44-25-dev/include/bits/string_fortified.h:59:33: warning: 'void* __builtin_memset(void*, int, long unsigned int)' specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] foldmason-4-dd3c235> 59 | return __builtin___memset_chk (__dest, __ch, __len, foldmason-4-dd3c235> | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ foldmason-4-dd3c235> 60 | __glibc_objsize0 (__dest)); foldmason-4-dd3c235> | ~~~~~~~~~~~~~~~~~~~~~~~~~~ foldmason-4-dd3c235> [100%] Linking CXX executable foldmason foldmason-4-dd3c235> [100%] Built target foldmason foldmason-4-dd3c235> buildPhase completed in 1 minutes 41 seconds foldmason-4-dd3c235> Running phase: installPhase foldmason-4-dd3c235> install flags: -j48 SHELL=/nix/store/10dxp0qxqxxsyiljrh2kp0xqhz6arhcx-bash-5.3p15/bin/bash install foldmason-4-dd3c235> [ 2%] Built target foldmason-generated foldmason-4-dd3c235> [ 7%] Built target local-generated foldmason-4-dd3c235> [ 7%] Built target cargo-prebuild_block_aligner_c foldmason-4-dd3c235> [ 8%] Built target version foldmason-4-dd3c235> [ 8%] Built target tinyexpr foldmason-4-dd3c235> [ 8%] Built target microtar foldmason-4-dd3c235> [ 19%] Built target generated foldmason-4-dd3c235> [ 19%] Built target ksw2 foldmason-4-dd3c235> [ 20%] Built target tantan foldmason-4-dd3c235> [ 27%] Built target libzstd_static foldmason-4-dd3c235> [ 30%] Built target foldcomp foldmason-4-dd3c235> [ 34%] Built target alp foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:32:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 32 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: `#[warn(missing_abi)]` on by default foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:39:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 39 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:46:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 46 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:61:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 61 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:68:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 68 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:76:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 76 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:86:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 86 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:97:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 97 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:108:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:119:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:126:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:133:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:140:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:149:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:156:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:163:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:170:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:179:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:186:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:194:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:203:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:210:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:218:12 foldmason-4-dd3c235> | foldmason-4-dd3c235> 218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:237:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 237 | pub unsafe extern fn $new_name(query_len: usize, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:246:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:259:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:270:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:288:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:295:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:302:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:309:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 315 | / gen_functions!( foldmason-4-dd3c235> 316 | | block_new_aa, foldmason-4-dd3c235> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 318 | | block_align_aa, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 332 | | AAMatrix, AAProfile, false, false foldmason-4-dd3c235> 333 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:237:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 237 | pub unsafe extern fn $new_name(query_len: usize, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:246:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:259:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:270:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:288:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:295:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:302:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:309:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 335 | / gen_functions!( foldmason-4-dd3c235> 336 | | block_new_aa_xdrop, foldmason-4-dd3c235> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldmason-4-dd3c235> 338 | | block_align_aa_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 352 | | AAMatrix, AAProfile, false, true foldmason-4-dd3c235> 353 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:237:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 237 | pub unsafe extern fn $new_name(query_len: usize, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:246:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:259:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:270:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:288:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:295:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:302:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:309:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 355 | / gen_functions!( foldmason-4-dd3c235> 356 | | block_new_aa_trace, foldmason-4-dd3c235> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 358 | | block_align_aa_trace, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 372 | | AAMatrix, AAProfile, true, false foldmason-4-dd3c235> 373 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:237:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 237 | pub unsafe extern fn $new_name(query_len: usize, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:246:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:259:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:270:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:288:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:295:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:302:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `extern` declarations without an explicit ABI are deprecated foldmason-4-dd3c235> --> ../src/ffi.rs:309:20 foldmason-4-dd3c235> | foldmason-4-dd3c235> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldmason-4-dd3c235> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldmason-4-dd3c235> ... foldmason-4-dd3c235> 375 | / gen_functions!( foldmason-4-dd3c235> 376 | | block_new_aa_trace_xdrop, foldmason-4-dd3c235> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldmason-4-dd3c235> 378 | | block_align_aa_trace_xdrop, foldmason-4-dd3c235> ... | foldmason-4-dd3c235> 392 | | AAMatrix, AAProfile, true, true foldmason-4-dd3c235> 393 | | ); foldmason-4-dd3c235> | |_- in this macro invocation foldmason-4-dd3c235> | foldmason-4-dd3c235> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldmason-4-dd3c235> foldmason-4-dd3c235> warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions) foldmason-4-dd3c235> Finished `release` profile [optimized] target(s) in 0.00s foldmason-4-dd3c235> [ 35%] Built target gemmiwrapper foldmason-4-dd3c235> Copying byproducts `libblock_aligner_c.a` to /build/source/build/lib/foldseek foldmason-4-dd3c235> [ 35%] Built target _cargo-build_block_aligner_c foldmason-4-dd3c235> [ 35%] Built target cargo-build_block_aligner_c foldmason-4-dd3c235> [ 84%] Built target mmseqs-framework foldmason-4-dd3c235> [ 84%] Built target 3di foldmason-4-dd3c235> [ 84%] Built target pulchra foldmason-4-dd3c235> [ 85%] Built target kerasify foldmason-4-dd3c235> [ 86%] Built target tmalign foldmason-4-dd3c235> [ 96%] Built target foldseek-framework foldmason-4-dd3c235> [100%] Built target foldmason foldmason-4-dd3c235> Install the project... foldmason-4-dd3c235> -- Install configuration: "Release" foldmason-4-dd3c235> -- Installing: /nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/bin/foldmason foldmason-4-dd3c235> Running phase: fixupPhase foldmason-4-dd3c235> shrinking RPATHs of ELF executables and libraries in /nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235 foldmason-4-dd3c235> shrinking /nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/bin/foldmason foldmason-4-dd3c235> checking for references to /build/ in /nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235... foldmason-4-dd3c235> patching script interpreter paths in /nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235 foldmason-4-dd3c235> stripping (with command strip and flags -S -p) in /nix/store/rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235/bin post-build step Route build to niks3: ok Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org time=2026-10-03T21:15:43.455+09:00 level=INFO msg="Uploading 1 paths to niks3.sjanglab.org (24 already cached)" time=2026-10-03T21:15:43.455+09:00 level=INFO msg="Uploading rjdimajz8fi4vyf832p3njyf7wnglj4b-foldmason-4-dd3c235 (22.2MB)" time=2026-10-03T21:15:44.766+09:00 level=INFO msg="Uploading 1 narinfos" time=2026-10-03T21:15:45.177+09:00 level=INFO msg="Upload complete. 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