these 6 derivations will be built: /nix/store/7r2c4yvvlznnbhkxwjqs29id3b1jsajm-python3.14-genome-collector-0.1.6.drv /nix/store/7vmbir5apblgrs7b15ypmrrkvriddxb0-pdf_reports-0.3.9-py3-none-any.whl.drv /nix/store/byypbnvpdylzrj1j4cv4887aabr0r6sa-sequenticon-0.1.8-py3-none-any.whl.drv /nix/store/yap6v1k7974wl9w2wgjysm3pmymiwmxy-python3.14-pdf-reports-0.3.9.drv /nix/store/s0qxkdi2508jka94xq639a5jbnwf3wzb-python3.14-sequenticon-0.1.8.drv /nix/store/cx4ci0l6gkkan2jfmfd5wbapd622j7sw-python3.14-dnachisel-3.2.16.drv these 20 paths will be fetched (4.7 MiB download, 19.6 MiB unpacked): /nix/store/rddxwpj8rhnq3h430r03gs1r0az8hymf-bowtie-1.3.1 /nix/store/26knsc372bg4ghmv665dhbyrsw5l54i3-python3.14-beautifulsoup4-4.15.0 /nix/store/43rl2jw4rv7caxrl0h644sck9a05kymj-python3.14-cssselect2-0.8.0 /nix/store/smfhql2rxq0hq33wx8jlilywbgffh764-python3.14-docopt-0.6.2 /nix/store/ycgdk7vrapv0sja55fgz5476jz47rxmh-python3.14-flametree-0.2.1 /nix/store/4x2vi6vga3cqb6gw1y47x6l604c41kas-python3.14-markdown-3.10.2 /nix/store/b5xlcw1qwnsyjyh84v45zfycjiiwcbbr-python3.14-mock-5.2.0 /nix/store/sb0grxcs10d19fk05k31c968qz1aka4x-python3.14-proglog-0.1.12 /nix/store/24prnxnmv9qwgajy88m4x5npwmjcdw58-python3.14-pydenticon-0.3.1 /nix/store/z4cwzvqrm33jh4dj84fdr5xha5q5ssn8-python3.14-pydyf-0.12.1 /nix/store/i63hximm11bpgh950bpz4bswmwp17g2c-python3.14-pyphen-0.18.1 /nix/store/g04y5lf9cimd8lm21q4jgvkd2yc3mibd-python3.14-pypugjs-7.0.0 /nix/store/6saxqcf5sl2wi0ry9zqp5ks98nld0604-python3.14-python-codon-tables-0.1.18 /nix/store/3nww1pdz46hh0xq3w6slkj2vspwvrv23-python3.14-soupsieve-2.8.4 /nix/store/q7ifwm4877n7mzdl1jnan8awwfp5wvbl-python3.14-tinycss2-1.5.1 /nix/store/8y2d3q6yjkyfn5m8p7a5a9xsja35lhx6-python3.14-tinyhtml5-2.1.0 /nix/store/95mr2mhryfg67klcfa1r3j60q98dm4xa-python3.14-weasyprint-69.0 /nix/store/yrgxyp990yz2hdn9m5bljn9kkbgj7bn3-python3.14-webencodings-0.5.1 /nix/store/k6gwl3kdw2pnlv08ymrak3jvpv16ycwx-python3.14-zopfli-0.4.0 /nix/store/ja1dx90pk44r95mgnn0im7icnh0pkl74-zopfli-1.0.3-lib building '/nix/store/labjkra4ddybw2nk8sia6m4glnchblk2-pdf_reports-0.3.9-py3-none-any.whl.drv' building '/nix/store/r86p4fc7znjp20cy9hwd4lp4qv0i0vvs-sequenticon-0.1.8-py3-none-any.whl.drv' pdf_reports-0.3.9-py3-none-any.whl> structuredAttrs is enabled sequenticon-0.1.8-py3-none-any.whl> structuredAttrs is enabled pdf_reports-0.3.9-py3-none-any.whl> pdf_reports-0.3.9-py3-none-any.whl> trying https://files.pythonhosted.org/packages/py3/p/pdf_reports/pdf_reports-0.3.9-py3-none-any.whl pdf_reports-0.3.9-py3-none-any.whl> % Total % Received % Xferd Average Speed Time Time Time Current pdf_reports-0.3.9-py3-none-any.whl> Dload Upload Total Spent Left Speed pdf_reports-0.3.9-py3-none-any.whl> sequenticon-0.1.8-py3-none-any.whl> sequenticon-0.1.8-py3-none-any.whl> trying https://files.pythonhosted.org/packages/py3/s/sequenticon/sequenticon-0.1.8-py3-none-any.whl sequenticon-0.1.8-py3-none-any.whl> % Total % Received % Xferd Average Speed Time Time Time Current sequenticon-0.1.8-py3-none-any.whl> Dload Upload Total Spent Left Speed sequenticon-0.1.8-py3-none-any.whl> building '/nix/store/7r2c4yvvlznnbhkxwjqs29id3b1jsajm-python3.14-genome-collector-0.1.6.drv' python3.14-genome-collector-0.1.6> Sourcing python-remove-tests-dir-hook python3.14-genome-collector-0.1.6> Sourcing python-catch-conflicts-hook.sh python3.14-genome-collector-0.1.6> Sourcing python-remove-bin-bytecode-hook.sh python3.14-genome-collector-0.1.6> Sourcing pypa-build-hook python3.14-genome-collector-0.1.6> Using pypaBuildPhase python3.14-genome-collector-0.1.6> Sourcing python-runtime-deps-check-hook python3.14-genome-collector-0.1.6> Using pythonRuntimeDepsCheckHook python3.14-genome-collector-0.1.6> Sourcing pypa-install-hook python3.14-genome-collector-0.1.6> Using pypaInstallPhase python3.14-genome-collector-0.1.6> Sourcing python-imports-check-hook.sh python3.14-genome-collector-0.1.6> Using pythonImportsCheckPhase python3.14-genome-collector-0.1.6> Sourcing python-metadata-check-hook.sh python3.14-genome-collector-0.1.6> Using pythonMetadataCheckPhase python3.14-genome-collector-0.1.6> Sourcing python-namespaces-hook python3.14-genome-collector-0.1.6> Sourcing python-catch-conflicts-hook.sh python3.14-genome-collector-0.1.6> Using checkPhaseThreadLimitHook sequenticon-0.1.8-py3-none-any.whl> 0 0 0 0 0 0 0 0 0 sequenticon-0.1.8-py3-none-any.whl> 0 0 0 0 0 0 0 0 0 sequenticon-0.1.8-py3-none-any.whl> 0 0 0 0 0 0 0 0 0 sequenticon-0.1.8-py3-none-any.whl> sequenticon-0.1.8-py3-none-any.whl> 0 0 0 0 0 0 0 0 0 sequenticon-0.1.8-py3-none-any.whl> 100 13843 100 13843 0 0 56283 0 0 sequenticon-0.1.8-py3-none-any.whl> 100 13843 100 13843 0 0 56259 0 0 sequenticon-0.1.8-py3-none-any.whl> 100 13843 100 13843 0 0 56238 0 0 python3.14-genome-collector-0.1.6> Running phase: unpackPhase pdf_reports-0.3.9-py3-none-any.whl> 0 0 0 0 0 0 0 0 0 pdf_reports-0.3.9-py3-none-any.whl> 0 0 0 0 0 0 0 0 0 pdf_reports-0.3.9-py3-none-any.whl> 0 0 0 0 0 0 0 0 0 pdf_reports-0.3.9-py3-none-any.whl> python3.14-genome-collector-0.1.6> unpacking source archive /nix/store/q09qvqkfh6jyz1mzk9r3f9p2lsn602z8-genome_collector-0.1.6.tar.gz python3.14-genome-collector-0.1.6> source root is genome_collector-0.1.6 python3.14-genome-collector-0.1.6> setting SOURCE_DATE_EPOCH to timestamp 1573517774 of file "genome_collector-0.1.6/setup.cfg" python3.14-genome-collector-0.1.6> Running phase: patchPhase python3.14-genome-collector-0.1.6> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-genome-collector-0.1.6> Running phase: configurePhase python3.14-genome-collector-0.1.6> no configure script, doing nothing python3.14-genome-collector-0.1.6> Running phase: buildPhase python3.14-genome-collector-0.1.6> Executing pypaBuildPhase python3.14-genome-collector-0.1.6> Creating a wheel... python3.14-genome-collector-0.1.6> pypa build flags: --no-isolation --outdir dist/ --wheel python3.14-genome-collector-0.1.6> * Getting build dependencies for wheel... pdf_reports-0.3.9-py3-none-any.whl> 0 0 0 0 0 0 0 0 0 pdf_reports-0.3.9-py3-none-any.whl> 100 115.7k 100 115.7k 0 0 234.9k 0 0 pdf_reports-0.3.9-py3-none-any.whl> 100 115.7k 100 115.7k 0 0 234.9k 0 0 pdf_reports-0.3.9-py3-none-any.whl> 100 115.7k 100 115.7k 0 0 234.9k 0 0 python3.14-genome-collector-0.1.6> running egg_info python3.14-genome-collector-0.1.6> writing genome_collector.egg-info/PKG-INFO building '/nix/store/yap6v1k7974wl9w2wgjysm3pmymiwmxy-python3.14-pdf-reports-0.3.9.drv' python3.14-genome-collector-0.1.6> writing dependency_links to genome_collector.egg-info/dependency_links.txt python3.14-genome-collector-0.1.6> writing requirements to genome_collector.egg-info/requires.txt python3.14-genome-collector-0.1.6> writing top-level names to genome_collector.egg-info/top_level.txt python3.14-genome-collector-0.1.6> reading manifest file 'genome_collector.egg-info/SOURCES.txt' python3.14-genome-collector-0.1.6> reading manifest template 'MANIFEST.in' python3.14-genome-collector-0.1.6> adding license file 'LICENCE.txt' python3.14-genome-collector-0.1.6> writing manifest file 'genome_collector.egg-info/SOURCES.txt' python3.14-genome-collector-0.1.6> * Building wheel... python3.14-pdf-reports-0.3.9> Sourcing python-remove-tests-dir-hook python3.14-pdf-reports-0.3.9> Sourcing python-catch-conflicts-hook.sh python3.14-pdf-reports-0.3.9> Sourcing python-remove-bin-bytecode-hook.sh python3.14-pdf-reports-0.3.9> Sourcing wheel setup hook python3.14-pdf-reports-0.3.9> Using wheelUnpackPhase python3.14-pdf-reports-0.3.9> Sourcing python-runtime-deps-check-hook python3.14-pdf-reports-0.3.9> Using pythonRuntimeDepsCheckHook python3.14-pdf-reports-0.3.9> Sourcing pypa-install-hook python3.14-pdf-reports-0.3.9> Using pypaInstallPhase python3.14-pdf-reports-0.3.9> Sourcing python-imports-check-hook.sh python3.14-pdf-reports-0.3.9> Using pythonImportsCheckPhase python3.14-pdf-reports-0.3.9> Sourcing python-namespaces-hook python3.14-pdf-reports-0.3.9> Sourcing python-catch-conflicts-hook.sh python3.14-pdf-reports-0.3.9> Using checkPhaseThreadLimitHook python3.14-pdf-reports-0.3.9> Running phase: unpackPhase python3.14-pdf-reports-0.3.9> Executing wheelUnpackPhase python3.14-genome-collector-0.1.6> running bdist_wheel python3.14-pdf-reports-0.3.9> Finished executing wheelUnpackPhase python3.14-pdf-reports-0.3.9> Running phase: patchPhase python3.14-genome-collector-0.1.6> running build python3.14-genome-collector-0.1.6> running build_py python3.14-genome-collector-0.1.6> creating build/lib/genome_collector python3.14-genome-collector-0.1.6> copying genome_collector/GenomeCollection.py -> build/lib/genome_collector python3.14-genome-collector-0.1.6> copying genome_collector/__main__.py -> build/lib/genome_collector python3.14-genome-collector-0.1.6> copying genome_collector/__init__.py -> build/lib/genome_collector python3.14-genome-collector-0.1.6> copying genome_collector/version.py -> build/lib/genome_collector python3.14-genome-collector-0.1.6> creating build/lib/genome_collector/mixins python3.14-genome-collector-0.1.6> copying genome_collector/mixins/BowtieMixin.py -> build/lib/genome_collector/mixins python3.14-genome-collector-0.1.6> copying genome_collector/mixins/NCBIMixin.py -> build/lib/genome_collector/mixins python3.14-genome-collector-0.1.6> copying genome_collector/mixins/FileManagerMixin.py -> build/lib/genome_collector/mixins python3.14-genome-collector-0.1.6> copying genome_collector/mixins/BlastMixin.py -> build/lib/genome_collector/mixins python3.14-genome-collector-0.1.6> copying genome_collector/mixins/__init__.py -> build/lib/genome_collector/mixins python3.14-pdf-reports-0.3.9> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-genome-collector-0.1.6> installing to build/bdist.linux-x86_64/wheel python3.14-genome-collector-0.1.6> running install python3.14-genome-collector-0.1.6> running install_lib python3.14-genome-collector-0.1.6> creating build/bdist.linux-x86_64/wheel python3.14-genome-collector-0.1.6> creating build/bdist.linux-x86_64/wheel/genome_collector python3.14-genome-collector-0.1.6> copying build/lib/genome_collector/GenomeCollection.py -> build/bdist.linux-x86_64/wheel/./genome_collector python3.14-genome-collector-0.1.6> copying build/lib/genome_collector/__main__.py -> build/bdist.linux-x86_64/wheel/./genome_collector python3.14-genome-collector-0.1.6> copying build/lib/genome_collector/__init__.py -> build/bdist.linux-x86_64/wheel/./genome_collector python3.14-genome-collector-0.1.6> copying build/lib/genome_collector/version.py -> build/bdist.linux-x86_64/wheel/./genome_collector python3.14-genome-collector-0.1.6> creating build/bdist.linux-x86_64/wheel/genome_collector/mixins python3.14-genome-collector-0.1.6> copying build/lib/genome_collector/mixins/BowtieMixin.py -> build/bdist.linux-x86_64/wheel/./genome_collector/mixins python3.14-genome-collector-0.1.6> copying build/lib/genome_collector/mixins/NCBIMixin.py -> build/bdist.linux-x86_64/wheel/./genome_collector/mixins python3.14-genome-collector-0.1.6> copying build/lib/genome_collector/mixins/FileManagerMixin.py -> build/bdist.linux-x86_64/wheel/./genome_collector/mixins python3.14-genome-collector-0.1.6> copying build/lib/genome_collector/mixins/BlastMixin.py -> build/bdist.linux-x86_64/wheel/./genome_collector/mixins python3.14-genome-collector-0.1.6> copying build/lib/genome_collector/mixins/__init__.py -> build/bdist.linux-x86_64/wheel/./genome_collector/mixins python3.14-genome-collector-0.1.6> running install_egg_info python3.14-genome-collector-0.1.6> running egg_info python3.14-genome-collector-0.1.6> writing genome_collector.egg-info/PKG-INFO python3.14-genome-collector-0.1.6> writing dependency_links to genome_collector.egg-info/dependency_links.txt python3.14-genome-collector-0.1.6> writing requirements to genome_collector.egg-info/requires.txt python3.14-genome-collector-0.1.6> writing top-level names to genome_collector.egg-info/top_level.txt python3.14-pdf-reports-0.3.9> Running phase: configurePhase python3.14-genome-collector-0.1.6> reading manifest file 'genome_collector.egg-info/SOURCES.txt' python3.14-genome-collector-0.1.6> reading manifest template 'MANIFEST.in' python3.14-genome-collector-0.1.6> adding license file 'LICENCE.txt' python3.14-genome-collector-0.1.6> writing manifest file 'genome_collector.egg-info/SOURCES.txt' python3.14-genome-collector-0.1.6> Copying genome_collector.egg-info to build/bdist.linux-x86_64/wheel/./genome_collector-0.1.6-py3.14.egg-info python3.14-genome-collector-0.1.6> running install_scripts python3.14-genome-collector-0.1.6> creating build/bdist.linux-x86_64/wheel/genome_collector-0.1.6.dist-info/WHEEL python3.14-genome-collector-0.1.6> creating '/build/genome_collector-0.1.6/dist/.tmp-dpn5rmik/genome_collector-0.1.6-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it python3.14-genome-collector-0.1.6> adding 'genome_collector/GenomeCollection.py' python3.14-genome-collector-0.1.6> adding 'genome_collector/__init__.py' python3.14-genome-collector-0.1.6> adding 'genome_collector/__main__.py' python3.14-genome-collector-0.1.6> adding 'genome_collector/version.py' python3.14-genome-collector-0.1.6> adding 'genome_collector/mixins/BlastMixin.py' python3.14-genome-collector-0.1.6> adding 'genome_collector/mixins/BowtieMixin.py' python3.14-genome-collector-0.1.6> adding 'genome_collector/mixins/FileManagerMixin.py' python3.14-genome-collector-0.1.6> adding 'genome_collector/mixins/NCBIMixin.py' python3.14-genome-collector-0.1.6> adding 'genome_collector/mixins/__init__.py' python3.14-genome-collector-0.1.6> adding 'genome_collector-0.1.6.dist-info/licenses/LICENCE.txt' python3.14-genome-collector-0.1.6> adding 'genome_collector-0.1.6.dist-info/METADATA' python3.14-genome-collector-0.1.6> adding 'genome_collector-0.1.6.dist-info/WHEEL' python3.14-genome-collector-0.1.6> adding 'genome_collector-0.1.6.dist-info/top_level.txt' python3.14-genome-collector-0.1.6> adding 'genome_collector-0.1.6.dist-info/RECORD' python3.14-genome-collector-0.1.6> removing build/bdist.linux-x86_64/wheel python3.14-pdf-reports-0.3.9> no configure script, doing nothing python3.14-pdf-reports-0.3.9> Running phase: buildPhase python3.14-genome-collector-0.1.6> Successfully built genome_collector-0.1.6-py3-none-any.whl python3.14-pdf-reports-0.3.9> no Makefile or custom buildPhase, doing nothing python3.14-pdf-reports-0.3.9> /build/dist /build python3.14-genome-collector-0.1.6> Finished creating a wheel... python3.14-genome-collector-0.1.6> Finished executing pypaBuildPhase python3.14-genome-collector-0.1.6> Running phase: pythonRuntimeDepsCheckHook python3.14-genome-collector-0.1.6> Executing pythonRuntimeDepsCheck python3.14-genome-collector-0.1.6> Checking runtime dependencies for genome_collector-0.1.6-py3-none-any.whl python3.14-pdf-reports-0.3.9> Unpacking to: unpacked/pdf_reports-0.3.9...OK python3.14-genome-collector-0.1.6> Finished executing pythonRuntimeDepsCheck python3.14-genome-collector-0.1.6> Running phase: installPhase python3.14-genome-collector-0.1.6> Executing pypaInstallPhase python3.14-pdf-reports-0.3.9> Repacking wheel as ./pdf_reports-0.3.9-py3-none-any.whl...OK python3.14-pdf-reports-0.3.9> /build python3.14-pdf-reports-0.3.9> Running phase: pythonRuntimeDepsCheckHook python3.14-pdf-reports-0.3.9> Executing pythonRuntimeDepsCheck python3.14-pdf-reports-0.3.9> Checking runtime dependencies for pdf_reports-0.3.9-py3-none-any.whl python3.14-genome-collector-0.1.6> Successfully installed genome_collector-0.1.6-py3-none-any.whl python3.14-genome-collector-0.1.6> Finished executing pypaInstallPhase python3.14-genome-collector-0.1.6> Running phase: pythonOutputDistPhase python3.14-genome-collector-0.1.6> Executing pythonOutputDistPhase python3.14-genome-collector-0.1.6> Finished executing pythonOutputDistPhase python3.14-genome-collector-0.1.6> Running phase: fixupPhase python3.14-genome-collector-0.1.6> shrinking RPATHs of ELF executables and libraries in /nix/store/hsd846h768v40fjry44bf53wd7q749mh-python3.14-genome-collector-0.1.6 python3.14-genome-collector-0.1.6> checking for references to /build/ in /nix/store/hsd846h768v40fjry44bf53wd7q749mh-python3.14-genome-collector-0.1.6... python3.14-genome-collector-0.1.6> patching script interpreter paths in /nix/store/hsd846h768v40fjry44bf53wd7q749mh-python3.14-genome-collector-0.1.6 python3.14-pdf-reports-0.3.9> Finished executing pythonRuntimeDepsCheck python3.14-pdf-reports-0.3.9> Running phase: installPhase python3.14-genome-collector-0.1.6> stripping (with command strip and flags -S -p) in /nix/store/hsd846h768v40fjry44bf53wd7q749mh-python3.14-genome-collector-0.1.6/lib python3.14-pdf-reports-0.3.9> Executing pypaInstallPhase python3.14-genome-collector-0.1.6> shrinking RPATHs of ELF executables and libraries in /nix/store/8qcwjjs2rb0aj4m8x7v2il29qq0kgivb-python3.14-genome-collector-0.1.6-dist python3.14-genome-collector-0.1.6> checking for references to /build/ in /nix/store/8qcwjjs2rb0aj4m8x7v2il29qq0kgivb-python3.14-genome-collector-0.1.6-dist... python3.14-genome-collector-0.1.6> patching script interpreter paths in /nix/store/8qcwjjs2rb0aj4m8x7v2il29qq0kgivb-python3.14-genome-collector-0.1.6-dist python3.14-genome-collector-0.1.6> Executing pythonRemoveTestsDir python3.14-genome-collector-0.1.6> Finished executing pythonRemoveTestsDir python3.14-genome-collector-0.1.6> Running phase: pythonCatchConflictsPhase python3.14-pdf-reports-0.3.9> Successfully installed pdf_reports-0.3.9-py3-none-any.whl python3.14-pdf-reports-0.3.9> Finished executing pypaInstallPhase python3.14-pdf-reports-0.3.9> Running phase: pythonOutputDistPhase python3.14-pdf-reports-0.3.9> Executing pythonOutputDistPhase python3.14-pdf-reports-0.3.9> Finished executing pythonOutputDistPhase python3.14-pdf-reports-0.3.9> Running phase: fixupPhase python3.14-pdf-reports-0.3.9> shrinking RPATHs of ELF executables and libraries in /nix/store/wxr2xvmaiynasfr934jbs6qm589hwqxs-python3.14-pdf-reports-0.3.9 python3.14-pdf-reports-0.3.9> checking for references to /build/ in /nix/store/wxr2xvmaiynasfr934jbs6qm589hwqxs-python3.14-pdf-reports-0.3.9... python3.14-pdf-reports-0.3.9> patching script interpreter paths in /nix/store/wxr2xvmaiynasfr934jbs6qm589hwqxs-python3.14-pdf-reports-0.3.9 python3.14-genome-collector-0.1.6> Running phase: pythonRemoveBinBytecodePhase python3.14-pdf-reports-0.3.9> stripping (with command strip and flags -S -p) in /nix/store/wxr2xvmaiynasfr934jbs6qm589hwqxs-python3.14-pdf-reports-0.3.9/lib python3.14-genome-collector-0.1.6> Running phase: pythonImportsCheckPhase python3.14-genome-collector-0.1.6> Executing pythonImportsCheckPhase python3.14-genome-collector-0.1.6> Check whether the following modules can be imported: genome_collector python3.14-pdf-reports-0.3.9> shrinking RPATHs of ELF executables and libraries in /nix/store/x1rjkva878pby78xjbym35k83s3g20dn-python3.14-pdf-reports-0.3.9-dist python3.14-pdf-reports-0.3.9> checking for references to /build/ in /nix/store/x1rjkva878pby78xjbym35k83s3g20dn-python3.14-pdf-reports-0.3.9-dist... python3.14-pdf-reports-0.3.9> patching script interpreter paths in /nix/store/x1rjkva878pby78xjbym35k83s3g20dn-python3.14-pdf-reports-0.3.9-dist python3.14-pdf-reports-0.3.9> Executing pythonRemoveTestsDir python3.14-pdf-reports-0.3.9> Finished executing pythonRemoveTestsDir python3.14-pdf-reports-0.3.9> Running phase: pythonCatchConflictsPhase python3.14-genome-collector-0.1.6> Running phase: pythonMetadataCheckPhase python3.14-genome-collector-0.1.6> Executing pythonMetadataCheckPhase python3.14-pdf-reports-0.3.9> Running phase: pythonRemoveBinBytecodePhase python3.14-pdf-reports-0.3.9> Running phase: pythonImportsCheckPhase python3.14-pdf-reports-0.3.9> Executing pythonImportsCheckPhase python3.14-pdf-reports-0.3.9> Check whether the following modules can be imported: pdf_reports python3.14-pdf-reports-0.3.9> Fontconfig error: Cannot load default config file: File not found python3.14-pdf-reports-0.3.9> python3.14-pdf-reports-0.3.9> Fontconfig error: No writable cache directories python3.14-pdf-reports-0.3.9> /var/cache/fontconfig python3.14-pdf-reports-0.3.9> /homeless-shelter/.cache/fontconfig python3.14-pdf-reports-0.3.9> python3.14-pdf-reports-0.3.9> Fontconfig error: No writable cache directories python3.14-pdf-reports-0.3.9> /var/cache/fontconfig python3.14-pdf-reports-0.3.9> /homeless-shelter/.cache/fontconfig python3.14-pdf-reports-0.3.9> python3.14-pdf-reports-0.3.9> Fontconfig error: No writable cache directories python3.14-pdf-reports-0.3.9> /var/cache/fontconfig python3.14-pdf-reports-0.3.9> /homeless-shelter/.cache/fontconfig python3.14-pdf-reports-0.3.9> python3.14-pdf-reports-0.3.9> Fontconfig error: No writable cache directories python3.14-pdf-reports-0.3.9> /var/cache/fontconfig python3.14-pdf-reports-0.3.9> /homeless-shelter/.cache/fontconfig python3.14-pdf-reports-0.3.9> python3.14-pdf-reports-0.3.9> Fontconfig error: No writable cache directories python3.14-pdf-reports-0.3.9> /var/cache/fontconfig python3.14-pdf-reports-0.3.9> /homeless-shelter/.cache/fontconfig python3.14-pdf-reports-0.3.9> python3.14-pdf-reports-0.3.9> Fontconfig error: No writable cache directories python3.14-pdf-reports-0.3.9> /var/cache/fontconfig python3.14-pdf-reports-0.3.9> /homeless-shelter/.cache/fontconfig python3.14-pdf-reports-0.3.9> python3.14-pdf-reports-0.3.9> Fontconfig error: No writable cache directories python3.14-pdf-reports-0.3.9> /var/cache/fontconfig python3.14-pdf-reports-0.3.9> /homeless-shelter/.cache/fontconfig python3.14-pdf-reports-0.3.9> python3.14-pdf-reports-0.3.9> Fontconfig error: No writable cache directories python3.14-pdf-reports-0.3.9> /var/cache/fontconfig python3.14-pdf-reports-0.3.9> /homeless-shelter/.cache/fontconfig building '/nix/store/s0qxkdi2508jka94xq639a5jbnwf3wzb-python3.14-sequenticon-0.1.8.drv' python3.14-sequenticon-0.1.8> Sourcing python-remove-tests-dir-hook python3.14-sequenticon-0.1.8> Sourcing python-catch-conflicts-hook.sh python3.14-sequenticon-0.1.8> Sourcing python-remove-bin-bytecode-hook.sh python3.14-sequenticon-0.1.8> Sourcing wheel setup hook python3.14-sequenticon-0.1.8> Using wheelUnpackPhase python3.14-sequenticon-0.1.8> Sourcing python-runtime-deps-check-hook python3.14-sequenticon-0.1.8> Using pythonRuntimeDepsCheckHook python3.14-sequenticon-0.1.8> Sourcing pypa-install-hook python3.14-sequenticon-0.1.8> Using pypaInstallPhase python3.14-sequenticon-0.1.8> Sourcing python-imports-check-hook.sh python3.14-sequenticon-0.1.8> Using pythonImportsCheckPhase python3.14-sequenticon-0.1.8> Sourcing python-namespaces-hook python3.14-sequenticon-0.1.8> Sourcing python-catch-conflicts-hook.sh python3.14-sequenticon-0.1.8> Using checkPhaseThreadLimitHook python3.14-sequenticon-0.1.8> Running phase: unpackPhase python3.14-sequenticon-0.1.8> Executing wheelUnpackPhase python3.14-sequenticon-0.1.8> Finished executing wheelUnpackPhase python3.14-sequenticon-0.1.8> Running phase: patchPhase python3.14-sequenticon-0.1.8> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-sequenticon-0.1.8> Running phase: configurePhase python3.14-sequenticon-0.1.8> no configure script, doing nothing python3.14-sequenticon-0.1.8> Running phase: buildPhase python3.14-sequenticon-0.1.8> no Makefile or custom buildPhase, doing nothing python3.14-sequenticon-0.1.8> Running phase: pythonRuntimeDepsCheckHook python3.14-sequenticon-0.1.8> Executing pythonRuntimeDepsCheck python3.14-sequenticon-0.1.8> Checking runtime dependencies for sequenticon-0.1.8-py3-none-any.whl python3.14-sequenticon-0.1.8> Finished executing pythonRuntimeDepsCheck python3.14-sequenticon-0.1.8> Running phase: installPhase python3.14-sequenticon-0.1.8> Executing pypaInstallPhase python3.14-sequenticon-0.1.8> Successfully installed sequenticon-0.1.8-py3-none-any.whl python3.14-sequenticon-0.1.8> Finished executing pypaInstallPhase python3.14-sequenticon-0.1.8> Running phase: pythonOutputDistPhase python3.14-sequenticon-0.1.8> Executing pythonOutputDistPhase python3.14-sequenticon-0.1.8> Finished executing pythonOutputDistPhase python3.14-sequenticon-0.1.8> Running phase: fixupPhase python3.14-sequenticon-0.1.8> shrinking RPATHs of ELF executables and libraries in /nix/store/nh9px8npvqby5wzv0ihfdfx5yhd2zjp3-python3.14-sequenticon-0.1.8 python3.14-sequenticon-0.1.8> checking for references to /build/ in /nix/store/nh9px8npvqby5wzv0ihfdfx5yhd2zjp3-python3.14-sequenticon-0.1.8... python3.14-sequenticon-0.1.8> patching script interpreter paths in /nix/store/nh9px8npvqby5wzv0ihfdfx5yhd2zjp3-python3.14-sequenticon-0.1.8 python3.14-sequenticon-0.1.8> stripping (with command strip and flags -S -p) in /nix/store/nh9px8npvqby5wzv0ihfdfx5yhd2zjp3-python3.14-sequenticon-0.1.8/lib python3.14-sequenticon-0.1.8> shrinking RPATHs of ELF executables and libraries in /nix/store/g4dx5d7023ij7104w3cs071a65zppz8l-python3.14-sequenticon-0.1.8-dist python3.14-sequenticon-0.1.8> checking for references to /build/ in /nix/store/g4dx5d7023ij7104w3cs071a65zppz8l-python3.14-sequenticon-0.1.8-dist... python3.14-sequenticon-0.1.8> patching script interpreter paths in /nix/store/g4dx5d7023ij7104w3cs071a65zppz8l-python3.14-sequenticon-0.1.8-dist python3.14-sequenticon-0.1.8> Executing pythonRemoveTestsDir python3.14-sequenticon-0.1.8> Finished executing pythonRemoveTestsDir python3.14-sequenticon-0.1.8> Running phase: pythonCatchConflictsPhase python3.14-sequenticon-0.1.8> Running phase: pythonRemoveBinBytecodePhase python3.14-sequenticon-0.1.8> Running phase: pythonImportsCheckPhase python3.14-sequenticon-0.1.8> Executing pythonImportsCheckPhase python3.14-sequenticon-0.1.8> Check whether the following modules can be imported: sequenticon python3.14-sequenticon-0.1.8> Fontconfig error: Cannot load default config file: File not found python3.14-sequenticon-0.1.8> python3.14-sequenticon-0.1.8> Fontconfig error: No writable cache directories python3.14-sequenticon-0.1.8> /var/cache/fontconfig python3.14-sequenticon-0.1.8> /homeless-shelter/.cache/fontconfig python3.14-sequenticon-0.1.8> python3.14-sequenticon-0.1.8> Fontconfig error: No writable cache directories python3.14-sequenticon-0.1.8> /var/cache/fontconfig python3.14-sequenticon-0.1.8> /homeless-shelter/.cache/fontconfig python3.14-sequenticon-0.1.8> python3.14-sequenticon-0.1.8> Fontconfig error: No writable cache directories python3.14-sequenticon-0.1.8> /var/cache/fontconfig python3.14-sequenticon-0.1.8> /homeless-shelter/.cache/fontconfig python3.14-sequenticon-0.1.8> python3.14-sequenticon-0.1.8> Fontconfig error: No writable cache directories python3.14-sequenticon-0.1.8> /var/cache/fontconfig python3.14-sequenticon-0.1.8> /homeless-shelter/.cache/fontconfig python3.14-sequenticon-0.1.8> python3.14-sequenticon-0.1.8> Fontconfig error: No writable cache directories python3.14-sequenticon-0.1.8> /var/cache/fontconfig python3.14-sequenticon-0.1.8> /homeless-shelter/.cache/fontconfig python3.14-sequenticon-0.1.8> python3.14-sequenticon-0.1.8> Fontconfig error: No writable cache directories python3.14-sequenticon-0.1.8> /var/cache/fontconfig python3.14-sequenticon-0.1.8> /homeless-shelter/.cache/fontconfig python3.14-sequenticon-0.1.8> python3.14-sequenticon-0.1.8> Fontconfig error: No writable cache directories python3.14-sequenticon-0.1.8> /var/cache/fontconfig python3.14-sequenticon-0.1.8> /homeless-shelter/.cache/fontconfig python3.14-sequenticon-0.1.8> python3.14-sequenticon-0.1.8> Fontconfig error: No writable cache directories python3.14-sequenticon-0.1.8> /var/cache/fontconfig python3.14-sequenticon-0.1.8> /homeless-shelter/.cache/fontconfig building '/nix/store/cx4ci0l6gkkan2jfmfd5wbapd622j7sw-python3.14-dnachisel-3.2.16.drv' python3.14-dnachisel-3.2.16> Sourcing python-remove-tests-dir-hook python3.14-dnachisel-3.2.16> Sourcing python-catch-conflicts-hook.sh python3.14-dnachisel-3.2.16> Sourcing python-remove-bin-bytecode-hook.sh python3.14-dnachisel-3.2.16> Sourcing pypa-build-hook python3.14-dnachisel-3.2.16> Using pypaBuildPhase python3.14-dnachisel-3.2.16> Sourcing python-runtime-deps-check-hook python3.14-dnachisel-3.2.16> Using pythonRuntimeDepsCheckHook python3.14-dnachisel-3.2.16> Sourcing pypa-install-hook python3.14-dnachisel-3.2.16> Using pypaInstallPhase python3.14-dnachisel-3.2.16> Sourcing python-imports-check-hook.sh python3.14-dnachisel-3.2.16> Using pythonImportsCheckPhase python3.14-dnachisel-3.2.16> Sourcing python-metadata-check-hook.sh python3.14-dnachisel-3.2.16> Using pythonMetadataCheckPhase python3.14-dnachisel-3.2.16> Sourcing python-namespaces-hook python3.14-dnachisel-3.2.16> Sourcing python-catch-conflicts-hook.sh python3.14-dnachisel-3.2.16> Sourcing pytest-check-hook python3.14-dnachisel-3.2.16> Using pytestCheckPhase python3.14-dnachisel-3.2.16> Using checkPhaseThreadLimitHook python3.14-dnachisel-3.2.16> Running phase: unpackPhase python3.14-dnachisel-3.2.16> unpacking source archive /nix/store/9mmjdsvm7djnn602nrq97pbfwpl14cg6-source python3.14-dnachisel-3.2.16> source root is source python3.14-dnachisel-3.2.16> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/tests_from_genbanks/test_from_genbanks.py" python3.14-dnachisel-3.2.16> Running phase: patchPhase python3.14-dnachisel-3.2.16> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-dnachisel-3.2.16> Running phase: configurePhase python3.14-dnachisel-3.2.16> no configure script, doing nothing python3.14-dnachisel-3.2.16> Running phase: buildPhase python3.14-dnachisel-3.2.16> Executing pypaBuildPhase python3.14-dnachisel-3.2.16> Creating a wheel... python3.14-dnachisel-3.2.16> pypa build flags: --no-isolation --outdir dist/ --wheel python3.14-dnachisel-3.2.16> * Getting build dependencies for wheel... python3.14-dnachisel-3.2.16> running egg_info python3.14-dnachisel-3.2.16> creating dnachisel.egg-info python3.14-dnachisel-3.2.16> writing dnachisel.egg-info/PKG-INFO python3.14-dnachisel-3.2.16> writing dependency_links to dnachisel.egg-info/dependency_links.txt python3.14-dnachisel-3.2.16> writing entry points to dnachisel.egg-info/entry_points.txt python3.14-dnachisel-3.2.16> writing requirements to dnachisel.egg-info/requires.txt python3.14-dnachisel-3.2.16> writing top-level names to dnachisel.egg-info/top_level.txt python3.14-dnachisel-3.2.16> writing manifest file 'dnachisel.egg-info/SOURCES.txt' python3.14-dnachisel-3.2.16> reading manifest file 'dnachisel.egg-info/SOURCES.txt' python3.14-dnachisel-3.2.16> adding license file 'LICENSE' python3.14-dnachisel-3.2.16> writing manifest file 'dnachisel.egg-info/SOURCES.txt' python3.14-dnachisel-3.2.16> * Building wheel... python3.14-dnachisel-3.2.16> running bdist_wheel python3.14-dnachisel-3.2.16> running build python3.14-dnachisel-3.2.16> running build_py python3.14-dnachisel-3.2.16> creating build/lib/dnachisel python3.14-dnachisel-3.2.16> copying dnachisel/Location.py -> build/lib/dnachisel python3.14-dnachisel-3.2.16> copying dnachisel/__init__.py -> build/lib/dnachisel python3.14-dnachisel-3.2.16> copying dnachisel/version.py -> build/lib/dnachisel python3.14-dnachisel-3.2.16> copying dnachisel/cli.py -> build/lib/dnachisel python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/DnaOptimizationProblem python3.14-dnachisel-3.2.16> copying dnachisel/DnaOptimizationProblem/CircularDnaOptimizationProblem.py -> build/lib/dnachisel/DnaOptimizationProblem python3.14-dnachisel-3.2.16> copying dnachisel/DnaOptimizationProblem/DnaOptimizationProblem.py -> build/lib/dnachisel/DnaOptimizationProblem python3.14-dnachisel-3.2.16> copying dnachisel/DnaOptimizationProblem/NoSolutionError.py -> build/lib/dnachisel/DnaOptimizationProblem python3.14-dnachisel-3.2.16> copying dnachisel/DnaOptimizationProblem/__init__.py -> build/lib/dnachisel/DnaOptimizationProblem python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/MutationSpace python3.14-dnachisel-3.2.16> copying dnachisel/MutationSpace/MutationChoice.py -> build/lib/dnachisel/MutationSpace python3.14-dnachisel-3.2.16> copying dnachisel/MutationSpace/MutationSpace.py -> build/lib/dnachisel/MutationSpace python3.14-dnachisel-3.2.16> copying dnachisel/MutationSpace/__init__.py -> build/lib/dnachisel/MutationSpace python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying dnachisel/SequencePattern/DnaNotationPattern.py -> build/lib/dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying dnachisel/SequencePattern/EnzymeSitePattern.py -> build/lib/dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying dnachisel/SequencePattern/HomopolymerPattern.py -> build/lib/dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying dnachisel/SequencePattern/MotifPssmPattern.py -> build/lib/dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying dnachisel/SequencePattern/RepeatedKmerPattern.py -> build/lib/dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying dnachisel/SequencePattern/SequencePattern.py -> build/lib/dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying dnachisel/SequencePattern/__init__.py -> build/lib/dnachisel/SequencePattern python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/Specification python3.14-dnachisel-3.2.16> copying dnachisel/Specification/FeatureRepresentationMixin.py -> build/lib/dnachisel/Specification python3.14-dnachisel-3.2.16> copying dnachisel/Specification/Specification.py -> build/lib/dnachisel/Specification python3.14-dnachisel-3.2.16> copying dnachisel/Specification/SpecificationSet.py -> build/lib/dnachisel/Specification python3.14-dnachisel-3.2.16> copying dnachisel/Specification/__init__.py -> build/lib/dnachisel/Specification python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> copying dnachisel/biotools/blast_sequence.py -> build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> copying dnachisel/biotools/bowtie.py -> build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> copying dnachisel/biotools/__init__.py -> build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> copying dnachisel/biotools/biotables.py -> build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> copying dnachisel/biotools/enzymes_operations.py -> build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> copying dnachisel/biotools/formatting_operations.py -> build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> copying dnachisel/biotools/gc_content.py -> build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> copying dnachisel/biotools/genbank_operations.py -> build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> copying dnachisel/biotools/indices_operations.py -> build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> copying dnachisel/biotools/random_sequences.py -> build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> copying dnachisel/biotools/sequences_differences.py -> build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> copying dnachisel/biotools/sequences_operations.py -> build/lib/dnachisel/biotools python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/AllowPrimer.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/AvoidBlastMatches.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/AvoidChanges.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/AvoidHairpins.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/AvoidHeterodimerization.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/AvoidMatches.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/AvoidPattern.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/AvoidStopCodons.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/CodonSpecification.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/EnforceChanges.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/EnforceChoice.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/EnforceGCContent.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/EnforceMeltingTemperature.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/EnforcePatternOccurence.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/EnforceRegionsCompatibility.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/EnforceSequence.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/EnforceTerminalGCContent.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/EnforceTranslation.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/SequenceLengthBounds.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/TerminalSpecification.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/UniquifyAllKmers.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/__init__.py -> build/lib/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/reports python3.14-dnachisel-3.2.16> copying dnachisel/reports/SpecAnnotationsTranslator.py -> build/lib/dnachisel/reports python3.14-dnachisel-3.2.16> copying dnachisel/reports/__init__.py -> build/lib/dnachisel/reports python3.14-dnachisel-3.2.16> copying dnachisel/reports/colors_cycle.py -> build/lib/dnachisel/reports python3.14-dnachisel-3.2.16> copying dnachisel/reports/optimization_reports.py -> build/lib/dnachisel/reports python3.14-dnachisel-3.2.16> copying dnachisel/reports/tools.py -> build/lib/dnachisel/reports python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/utils python3.14-dnachisel-3.2.16> copying dnachisel/utils/__init__.py -> build/lib/dnachisel/utils python3.14-dnachisel-3.2.16> copying dnachisel/utils/utils.py -> build/lib/dnachisel/utils python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/DnaOptimizationProblem/mixins python3.14-dnachisel-3.2.16> copying dnachisel/DnaOptimizationProblem/mixins/ConstraintsSolverMixin.py -> build/lib/dnachisel/DnaOptimizationProblem/mixins python3.14-dnachisel-3.2.16> copying dnachisel/DnaOptimizationProblem/mixins/ObjectivesMaximizerMixin.py -> build/lib/dnachisel/DnaOptimizationProblem/mixins python3.14-dnachisel-3.2.16> copying dnachisel/DnaOptimizationProblem/mixins/RecordRepresentationMixin.py -> build/lib/dnachisel/DnaOptimizationProblem/mixins python3.14-dnachisel-3.2.16> copying dnachisel/DnaOptimizationProblem/mixins/__init__.py -> build/lib/dnachisel/DnaOptimizationProblem/mixins python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/Specification/SpecEvaluation python3.14-dnachisel-3.2.16> copying dnachisel/Specification/SpecEvaluation/ProblemConstraintsEvaluations.py -> build/lib/dnachisel/Specification/SpecEvaluation python3.14-dnachisel-3.2.16> copying dnachisel/Specification/SpecEvaluation/ProblemObjectivesEvaluations.py -> build/lib/dnachisel/Specification/SpecEvaluation python3.14-dnachisel-3.2.16> copying dnachisel/Specification/SpecEvaluation/SpecEvaluation.py -> build/lib/dnachisel/Specification/SpecEvaluation python3.14-dnachisel-3.2.16> copying dnachisel/Specification/SpecEvaluation/SpecEvaluations.py -> build/lib/dnachisel/Specification/SpecEvaluation python3.14-dnachisel-3.2.16> copying dnachisel/Specification/SpecEvaluation/__init__.py -> build/lib/dnachisel/Specification/SpecEvaluation python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/codon_optimization/AvoidRareCodons.py -> build/lib/dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/codon_optimization/BaseCodonOptimizationClass.py -> build/lib/dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/codon_optimization/CodonOptimize.py -> build/lib/dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/codon_optimization/HarmonizeRCA.py -> build/lib/dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/codon_optimization/MatchTargetCodonUsage.py -> build/lib/dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/codon_optimization/MaximizeCAI.py -> build/lib/dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying dnachisel/builtin_specifications/codon_optimization/__init__.py -> build/lib/dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/reports/constraints_reports python3.14-dnachisel-3.2.16> copying dnachisel/reports/constraints_reports/GraphicTranslator.py -> build/lib/dnachisel/reports/constraints_reports python3.14-dnachisel-3.2.16> copying dnachisel/reports/constraints_reports/__init__.py -> build/lib/dnachisel/reports/constraints_reports python3.14-dnachisel-3.2.16> copying dnachisel/reports/constraints_reports/constraints_breaches_dataframe.py -> build/lib/dnachisel/reports/constraints_reports python3.14-dnachisel-3.2.16> copying dnachisel/reports/constraints_reports/constraints_reports.py -> build/lib/dnachisel/reports/constraints_reports python3.14-dnachisel-3.2.16> running egg_info python3.14-dnachisel-3.2.16> writing dnachisel.egg-info/PKG-INFO python3.14-dnachisel-3.2.16> writing dependency_links to dnachisel.egg-info/dependency_links.txt python3.14-dnachisel-3.2.16> writing entry points to dnachisel.egg-info/entry_points.txt python3.14-dnachisel-3.2.16> writing requirements to dnachisel.egg-info/requires.txt python3.14-dnachisel-3.2.16> writing top-level names to dnachisel.egg-info/top_level.txt python3.14-dnachisel-3.2.16> reading manifest file 'dnachisel.egg-info/SOURCES.txt' python3.14-dnachisel-3.2.16> adding license file 'LICENSE' python3.14-dnachisel-3.2.16> writing manifest file 'dnachisel.egg-info/SOURCES.txt' python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/biotools/data python3.14-dnachisel-3.2.16> copying dnachisel/biotools/data/README.md -> build/lib/dnachisel/biotools/data python3.14-dnachisel-3.2.16> copying dnachisel/biotools/data/complements.csv -> build/lib/dnachisel/biotools/data python3.14-dnachisel-3.2.16> copying dnachisel/biotools/data/iupac_notation.csv -> build/lib/dnachisel/biotools/data python3.14-dnachisel-3.2.16> copying dnachisel/biotools/data/nucleotide_to_regexpr.csv -> build/lib/dnachisel/biotools/data python3.14-dnachisel-3.2.16> creating build/lib/dnachisel/reports/assets python3.14-dnachisel-3.2.16> copying dnachisel/reports/assets/logo.png -> build/lib/dnachisel/reports/assets python3.14-dnachisel-3.2.16> copying dnachisel/reports/assets/optimization_report.pug -> build/lib/dnachisel/reports/assets python3.14-dnachisel-3.2.16> copying dnachisel/reports/assets/style.css -> build/lib/dnachisel/reports/assets python3.14-dnachisel-3.2.16> installing to build/bdist.linux-x86_64/wheel python3.14-dnachisel-3.2.16> running install python3.14-dnachisel-3.2.16> running install_lib python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/Location.py -> build/bdist.linux-x86_64/wheel/./dnachisel python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/version.py -> build/bdist.linux-x86_64/wheel/./dnachisel python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/cli.py -> build/bdist.linux-x86_64/wheel/./dnachisel python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/DnaOptimizationProblem python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/DnaOptimizationProblem/CircularDnaOptimizationProblem.py -> build/bdist.linux-x86_64/wheel/./dnachisel/DnaOptimizationProblem python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/DnaOptimizationProblem/DnaOptimizationProblem.py -> build/bdist.linux-x86_64/wheel/./dnachisel/DnaOptimizationProblem python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/DnaOptimizationProblem/NoSolutionError.py -> build/bdist.linux-x86_64/wheel/./dnachisel/DnaOptimizationProblem python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/DnaOptimizationProblem/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel/DnaOptimizationProblem python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/DnaOptimizationProblem/mixins python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/DnaOptimizationProblem/mixins/ConstraintsSolverMixin.py -> build/bdist.linux-x86_64/wheel/./dnachisel/DnaOptimizationProblem/mixins python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/DnaOptimizationProblem/mixins/ObjectivesMaximizerMixin.py -> build/bdist.linux-x86_64/wheel/./dnachisel/DnaOptimizationProblem/mixins python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/DnaOptimizationProblem/mixins/RecordRepresentationMixin.py -> build/bdist.linux-x86_64/wheel/./dnachisel/DnaOptimizationProblem/mixins python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/DnaOptimizationProblem/mixins/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel/DnaOptimizationProblem/mixins python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/MutationSpace python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/MutationSpace/MutationChoice.py -> build/bdist.linux-x86_64/wheel/./dnachisel/MutationSpace python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/MutationSpace/MutationSpace.py -> build/bdist.linux-x86_64/wheel/./dnachisel/MutationSpace python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/MutationSpace/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel/MutationSpace python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/SequencePattern/DnaNotationPattern.py -> build/bdist.linux-x86_64/wheel/./dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/SequencePattern/EnzymeSitePattern.py -> build/bdist.linux-x86_64/wheel/./dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/SequencePattern/HomopolymerPattern.py -> build/bdist.linux-x86_64/wheel/./dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/SequencePattern/MotifPssmPattern.py -> build/bdist.linux-x86_64/wheel/./dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/SequencePattern/RepeatedKmerPattern.py -> build/bdist.linux-x86_64/wheel/./dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/SequencePattern/SequencePattern.py -> build/bdist.linux-x86_64/wheel/./dnachisel/SequencePattern python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/SequencePattern/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel/SequencePattern python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/Specification python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/Specification/FeatureRepresentationMixin.py -> build/bdist.linux-x86_64/wheel/./dnachisel/Specification python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/Specification/Specification.py -> build/bdist.linux-x86_64/wheel/./dnachisel/Specification python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/Specification/SpecificationSet.py -> build/bdist.linux-x86_64/wheel/./dnachisel/Specification python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/Specification/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel/Specification python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/Specification/SpecEvaluation python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/Specification/SpecEvaluation/ProblemConstraintsEvaluations.py -> build/bdist.linux-x86_64/wheel/./dnachisel/Specification/SpecEvaluation python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/Specification/SpecEvaluation/ProblemObjectivesEvaluations.py -> build/bdist.linux-x86_64/wheel/./dnachisel/Specification/SpecEvaluation python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/Specification/SpecEvaluation/SpecEvaluation.py -> build/bdist.linux-x86_64/wheel/./dnachisel/Specification/SpecEvaluation python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/Specification/SpecEvaluation/SpecEvaluations.py -> build/bdist.linux-x86_64/wheel/./dnachisel/Specification/SpecEvaluation python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/Specification/SpecEvaluation/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel/Specification/SpecEvaluation python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/biotools python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/blast_sequence.py -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/bowtie.py -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/biotables.py -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/enzymes_operations.py -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/formatting_operations.py -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/gc_content.py -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/genbank_operations.py -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/indices_operations.py -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/random_sequences.py -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/sequences_differences.py -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/sequences_operations.py -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/biotools/data python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/data/README.md -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools/data python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/data/complements.csv -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools/data python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/data/iupac_notation.csv -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools/data python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/biotools/data/nucleotide_to_regexpr.csv -> build/bdist.linux-x86_64/wheel/./dnachisel/biotools/data python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/AllowPrimer.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/AvoidBlastMatches.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/AvoidChanges.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/AvoidHairpins.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/AvoidHeterodimerization.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/AvoidMatches.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/AvoidPattern.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/AvoidStopCodons.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/CodonSpecification.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/EnforceChanges.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/EnforceChoice.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/EnforceGCContent.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/EnforceMeltingTemperature.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/EnforcePatternOccurence.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/EnforceRegionsCompatibility.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/EnforceSequence.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/EnforceTerminalGCContent.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/EnforceTranslation.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/SequenceLengthBounds.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/TerminalSpecification.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/UniquifyAllKmers.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/codon_optimization/AvoidRareCodons.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/codon_optimization/BaseCodonOptimizationClass.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/codon_optimization/CodonOptimize.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/codon_optimization/HarmonizeRCA.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/codon_optimization/MatchTargetCodonUsage.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/codon_optimization/MaximizeCAI.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/builtin_specifications/codon_optimization/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel/builtin_specifications/codon_optimization python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/reports python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/reports/SpecAnnotationsTranslator.py -> build/bdist.linux-x86_64/wheel/./dnachisel/reports python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/reports/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel/reports python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/reports/colors_cycle.py -> build/bdist.linux-x86_64/wheel/./dnachisel/reports python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/reports/optimization_reports.py -> build/bdist.linux-x86_64/wheel/./dnachisel/reports python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/reports/tools.py -> build/bdist.linux-x86_64/wheel/./dnachisel/reports python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/reports/constraints_reports python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/reports/constraints_reports/GraphicTranslator.py -> build/bdist.linux-x86_64/wheel/./dnachisel/reports/constraints_reports python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/reports/constraints_reports/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel/reports/constraints_reports python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/reports/constraints_reports/constraints_breaches_dataframe.py -> build/bdist.linux-x86_64/wheel/./dnachisel/reports/constraints_reports python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/reports/constraints_reports/constraints_reports.py -> build/bdist.linux-x86_64/wheel/./dnachisel/reports/constraints_reports python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/reports/assets python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/reports/assets/logo.png -> build/bdist.linux-x86_64/wheel/./dnachisel/reports/assets python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/reports/assets/optimization_report.pug -> build/bdist.linux-x86_64/wheel/./dnachisel/reports/assets python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/reports/assets/style.css -> build/bdist.linux-x86_64/wheel/./dnachisel/reports/assets python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel/utils python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/utils/__init__.py -> build/bdist.linux-x86_64/wheel/./dnachisel/utils python3.14-dnachisel-3.2.16> copying build/lib/dnachisel/utils/utils.py -> build/bdist.linux-x86_64/wheel/./dnachisel/utils python3.14-dnachisel-3.2.16> running install_egg_info python3.14-dnachisel-3.2.16> Copying dnachisel.egg-info to build/bdist.linux-x86_64/wheel/./dnachisel-3.2.16-py3.14.egg-info python3.14-dnachisel-3.2.16> running install_scripts python3.14-dnachisel-3.2.16> creating build/bdist.linux-x86_64/wheel/dnachisel-3.2.16.dist-info/WHEEL python3.14-dnachisel-3.2.16> creating '/build/source/dist/.tmp-1iufmisk/dnachisel-3.2.16-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it python3.14-dnachisel-3.2.16> adding 'dnachisel/Location.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/cli.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/version.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/DnaOptimizationProblem/CircularDnaOptimizationProblem.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/DnaOptimizationProblem/DnaOptimizationProblem.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/DnaOptimizationProblem/NoSolutionError.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/DnaOptimizationProblem/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/DnaOptimizationProblem/mixins/ConstraintsSolverMixin.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/DnaOptimizationProblem/mixins/ObjectivesMaximizerMixin.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/DnaOptimizationProblem/mixins/RecordRepresentationMixin.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/DnaOptimizationProblem/mixins/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/MutationSpace/MutationChoice.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/MutationSpace/MutationSpace.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/MutationSpace/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/SequencePattern/DnaNotationPattern.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/SequencePattern/EnzymeSitePattern.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/SequencePattern/HomopolymerPattern.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/SequencePattern/MotifPssmPattern.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/SequencePattern/RepeatedKmerPattern.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/SequencePattern/SequencePattern.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/SequencePattern/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/Specification/FeatureRepresentationMixin.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/Specification/Specification.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/Specification/SpecificationSet.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/Specification/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/Specification/SpecEvaluation/ProblemConstraintsEvaluations.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/Specification/SpecEvaluation/ProblemObjectivesEvaluations.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/Specification/SpecEvaluation/SpecEvaluation.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/Specification/SpecEvaluation/SpecEvaluations.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/Specification/SpecEvaluation/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/biotables.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/blast_sequence.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/bowtie.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/enzymes_operations.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/formatting_operations.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/gc_content.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/genbank_operations.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/indices_operations.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/random_sequences.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/sequences_differences.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/sequences_operations.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/data/README.md' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/data/complements.csv' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/data/iupac_notation.csv' python3.14-dnachisel-3.2.16> adding 'dnachisel/biotools/data/nucleotide_to_regexpr.csv' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/AllowPrimer.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/AvoidBlastMatches.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/AvoidChanges.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/AvoidHairpins.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/AvoidHeterodimerization.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/AvoidMatches.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/AvoidPattern.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/AvoidStopCodons.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/CodonSpecification.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/EnforceChanges.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/EnforceChoice.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/EnforceGCContent.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/EnforceMeltingTemperature.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/EnforcePatternOccurence.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/EnforceRegionsCompatibility.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/EnforceSequence.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/EnforceTerminalGCContent.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/EnforceTranslation.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/SequenceLengthBounds.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/TerminalSpecification.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/UniquifyAllKmers.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/codon_optimization/AvoidRareCodons.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/codon_optimization/BaseCodonOptimizationClass.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/codon_optimization/CodonOptimize.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/codon_optimization/HarmonizeRCA.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/codon_optimization/MatchTargetCodonUsage.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/codon_optimization/MaximizeCAI.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/builtin_specifications/codon_optimization/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/reports/SpecAnnotationsTranslator.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/reports/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/reports/colors_cycle.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/reports/optimization_reports.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/reports/tools.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/reports/assets/logo.png' python3.14-dnachisel-3.2.16> adding 'dnachisel/reports/assets/optimization_report.pug' python3.14-dnachisel-3.2.16> adding 'dnachisel/reports/assets/style.css' python3.14-dnachisel-3.2.16> adding 'dnachisel/reports/constraints_reports/GraphicTranslator.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/reports/constraints_reports/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/reports/constraints_reports/constraints_breaches_dataframe.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/reports/constraints_reports/constraints_reports.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/utils/__init__.py' python3.14-dnachisel-3.2.16> adding 'dnachisel/utils/utils.py' python3.14-dnachisel-3.2.16> adding 'dnachisel-3.2.16.dist-info/licenses/LICENSE' python3.14-dnachisel-3.2.16> adding 'dnachisel-3.2.16.dist-info/METADATA' python3.14-dnachisel-3.2.16> adding 'dnachisel-3.2.16.dist-info/WHEEL' python3.14-dnachisel-3.2.16> adding 'dnachisel-3.2.16.dist-info/entry_points.txt' python3.14-dnachisel-3.2.16> adding 'dnachisel-3.2.16.dist-info/top_level.txt' python3.14-dnachisel-3.2.16> adding 'dnachisel-3.2.16.dist-info/RECORD' python3.14-dnachisel-3.2.16> removing build/bdist.linux-x86_64/wheel python3.14-dnachisel-3.2.16> Successfully built dnachisel-3.2.16-py3-none-any.whl python3.14-dnachisel-3.2.16> Finished creating a wheel... python3.14-dnachisel-3.2.16> Finished executing pypaBuildPhase python3.14-dnachisel-3.2.16> Running phase: pythonRuntimeDepsCheckHook python3.14-dnachisel-3.2.16> Executing pythonRuntimeDepsCheck python3.14-dnachisel-3.2.16> Checking runtime dependencies for dnachisel-3.2.16-py3-none-any.whl python3.14-dnachisel-3.2.16> Finished executing pythonRuntimeDepsCheck python3.14-dnachisel-3.2.16> Running phase: installPhase python3.14-dnachisel-3.2.16> Executing pypaInstallPhase python3.14-dnachisel-3.2.16> Successfully installed dnachisel-3.2.16-py3-none-any.whl python3.14-dnachisel-3.2.16> Finished executing pypaInstallPhase python3.14-dnachisel-3.2.16> Running phase: pythonOutputDistPhase python3.14-dnachisel-3.2.16> Executing pythonOutputDistPhase python3.14-dnachisel-3.2.16> Finished executing pythonOutputDistPhase python3.14-dnachisel-3.2.16> Running phase: fixupPhase python3.14-dnachisel-3.2.16> shrinking RPATHs of ELF executables and libraries in /nix/store/v92r8k22wqxhzs39bs90k8f46a1f93kq-python3.14-dnachisel-3.2.16 python3.14-dnachisel-3.2.16> checking for references to /build/ in /nix/store/v92r8k22wqxhzs39bs90k8f46a1f93kq-python3.14-dnachisel-3.2.16... python3.14-dnachisel-3.2.16> patching script interpreter paths in /nix/store/v92r8k22wqxhzs39bs90k8f46a1f93kq-python3.14-dnachisel-3.2.16 python3.14-dnachisel-3.2.16> stripping (with command strip and flags -S -p) in /nix/store/v92r8k22wqxhzs39bs90k8f46a1f93kq-python3.14-dnachisel-3.2.16/lib /nix/store/v92r8k22wqxhzs39bs90k8f46a1f93kq-python3.14-dnachisel-3.2.16/bin python3.14-dnachisel-3.2.16> shrinking RPATHs of ELF executables and libraries in /nix/store/qvl0a4sa4bhj6v0xiydq71vblzx2jgjz-python3.14-dnachisel-3.2.16-dist python3.14-dnachisel-3.2.16> checking for references to /build/ in /nix/store/qvl0a4sa4bhj6v0xiydq71vblzx2jgjz-python3.14-dnachisel-3.2.16-dist... python3.14-dnachisel-3.2.16> patching script interpreter paths in /nix/store/qvl0a4sa4bhj6v0xiydq71vblzx2jgjz-python3.14-dnachisel-3.2.16-dist python3.14-dnachisel-3.2.16> Rewriting #!/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/bin/python3.14 to #!/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7 python3.14-dnachisel-3.2.16> wrapping `/nix/store/v92r8k22wqxhzs39bs90k8f46a1f93kq-python3.14-dnachisel-3.2.16/bin/dnachisel'... python3.14-dnachisel-3.2.16> Executing pythonRemoveTestsDir python3.14-dnachisel-3.2.16> Finished executing pythonRemoveTestsDir python3.14-dnachisel-3.2.16> Running phase: installCheckPhase python3.14-dnachisel-3.2.16> setting known thread variables to default: 1 python3.14-dnachisel-3.2.16> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 python3.14-dnachisel-3.2.16> no Makefile or custom installCheckPhase, doing nothing python3.14-dnachisel-3.2.16> Running phase: pythonCatchConflictsPhase python3.14-dnachisel-3.2.16> Running phase: pythonRemoveBinBytecodePhase python3.14-dnachisel-3.2.16> Running phase: pythonImportsCheckPhase python3.14-dnachisel-3.2.16> Executing pythonImportsCheckPhase python3.14-dnachisel-3.2.16> Check whether the following modules can be imported: dnachisel python3.14-dnachisel-3.2.16> mkdir -p failed for path /homeless-shelter/.config/matplotlib: [Errno 13] Permission denied: '/homeless-shelter' python3.14-dnachisel-3.2.16> Matplotlib created a temporary cache directory at /build/matplotlib-46o39r2v because there was an issue with the default path ({configdir}); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. python3.14-dnachisel-3.2.16> Fontconfig error: Cannot load default config file: File not found python3.14-dnachisel-3.2.16> python3.14-dnachisel-3.2.16> Fontconfig error: No writable cache directories python3.14-dnachisel-3.2.16> /var/cache/fontconfig python3.14-dnachisel-3.2.16> /homeless-shelter/.cache/fontconfig python3.14-dnachisel-3.2.16> python3.14-dnachisel-3.2.16> Fontconfig error: No writable cache directories python3.14-dnachisel-3.2.16> /var/cache/fontconfig python3.14-dnachisel-3.2.16> /homeless-shelter/.cache/fontconfig python3.14-dnachisel-3.2.16> python3.14-dnachisel-3.2.16> Fontconfig error: No writable cache directories python3.14-dnachisel-3.2.16> /var/cache/fontconfig python3.14-dnachisel-3.2.16> /homeless-shelter/.cache/fontconfig python3.14-dnachisel-3.2.16> python3.14-dnachisel-3.2.16> Fontconfig error: No writable cache directories python3.14-dnachisel-3.2.16> /var/cache/fontconfig python3.14-dnachisel-3.2.16> /homeless-shelter/.cache/fontconfig python3.14-dnachisel-3.2.16> python3.14-dnachisel-3.2.16> Fontconfig error: No writable cache directories python3.14-dnachisel-3.2.16> /var/cache/fontconfig python3.14-dnachisel-3.2.16> /homeless-shelter/.cache/fontconfig python3.14-dnachisel-3.2.16> python3.14-dnachisel-3.2.16> Fontconfig error: No writable cache directories python3.14-dnachisel-3.2.16> /var/cache/fontconfig python3.14-dnachisel-3.2.16> /homeless-shelter/.cache/fontconfig python3.14-dnachisel-3.2.16> python3.14-dnachisel-3.2.16> Fontconfig error: No writable cache directories python3.14-dnachisel-3.2.16> /var/cache/fontconfig python3.14-dnachisel-3.2.16> /homeless-shelter/.cache/fontconfig python3.14-dnachisel-3.2.16> python3.14-dnachisel-3.2.16> Fontconfig error: No writable cache directories python3.14-dnachisel-3.2.16> /var/cache/fontconfig python3.14-dnachisel-3.2.16> /homeless-shelter/.cache/fontconfig python3.14-dnachisel-3.2.16> Running phase: pythonMetadataCheckPhase python3.14-dnachisel-3.2.16> Executing pythonMetadataCheckPhase python3.14-dnachisel-3.2.16> Running phase: pytestCheckPhase python3.14-dnachisel-3.2.16> Executing pytestCheckPhase python3.14-dnachisel-3.2.16> setting known thread variables to default: 1 python3.14-dnachisel-3.2.16> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 python3.14-dnachisel-3.2.16> pytest flags: -m pytest tests -k not\ \(test_avoid_phage_blast_matches\)\ and\ not\ \(test_avoid_matches_with_phage\) python3.14-dnachisel-3.2.16> ============================= test session starts ============================== python3.14-dnachisel-3.2.16> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0 python3.14-dnachisel-3.2.16> rootdir: /build/source python3.14-dnachisel-3.2.16> configfile: pyproject.toml python3.14-dnachisel-3.2.16> collected 149 items / 2 deselected / 147 selected python3.14-dnachisel-3.2.16> python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_AllowPrimer.py . [ 0%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_AvoidBlastMatches.py . [ 1%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_AvoidChanges.py ..... [ 4%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_AvoidHairpins.py .. [ 6%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_AvoidMatches.py . [ 6%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_AvoidPattern.py ......... [ 12%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_AvoidRareCodons.py .... [ 15%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_AvoidStopCodons.py . [ 16%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_CodonOptimize.py ....... [ 21%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_EnforceChanges.py ........... [ 28%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_EnforceChoice.py . [ 29%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_EnforceGCContent.py .. [ 30%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_EnforceMeltingTemperature.py . [ 31%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_EnforcePatternOccurence.py ... [ 33%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_EnforceRegionsCompatibility.py . [ 34%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_EnforceSequence.py .. [ 35%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_EnforceTerminalGCContent.py . [ 36%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_EnforceTranslation.py ...... [ 40%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_SequenceLengthBounds.py . [ 40%] python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_UniquifyAllKmers.py ...... [ 44%] python3.14-dnachisel-3.2.16> tests/test_Location.py ......................................... [ 72%] python3.14-dnachisel-3.2.16> tests/test_MutationChoices.py ... [ 74%] python3.14-dnachisel-3.2.16> tests/test_NoSolutionError.py ... [ 76%] python3.14-dnachisel-3.2.16> tests/test_biotools.py ....... [ 81%] python3.14-dnachisel-3.2.16> tests/test_circular_sequences.py .. [ 82%] python3.14-dnachisel-3.2.16> tests/test_constraints_reports.py . [ 83%] python3.14-dnachisel-3.2.16> tests/test_determinism/test_determinism.py .. [ 85%] python3.14-dnachisel-3.2.16> tests/test_features_annotations.py ... [ 87%] python3.14-dnachisel-3.2.16> tests/test_io.py .... [ 89%] python3.14-dnachisel-3.2.16> tests/test_optimization_with_report.py .... [ 92%] python3.14-dnachisel-3.2.16> tests/test_patterns.py ... [ 94%] python3.14-dnachisel-3.2.16> tests/test_scenarios/test_primers_collection.py . [ 95%] python3.14-dnachisel-3.2.16> tests/test_utils.py . [ 95%] python3.14-dnachisel-3.2.16> tests/tests_from_genbanks/test_from_genbanks.py ...... [100%] python3.14-dnachisel-3.2.16> python3.14-dnachisel-3.2.16> =============================== warnings summary =============================== python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_AllowPrimer.py::test_AllowPrimer python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_EnforceMeltingTemperature.py::test_enforce_melting_temperature python3.14-dnachisel-3.2.16> tests/tests_from_genbanks/test_from_genbanks.py::test_all_shorthands python3.14-dnachisel-3.2.16> /nix/store/gwzskzza0qgjzg1ifqfpwl6nyrpfp73y-python3.14-primer3-py-2.3.1/lib/python3.14/site-packages/primer3/bindings.py:489: UserWarning: Function deprecated please use "calc_tm" instead python3.14-dnachisel-3.2.16> return THERMO_ANALYSIS.calcTm(seq) python3.14-dnachisel-3.2.16> python3.14-dnachisel-3.2.16> tests/builtin_specifications/test_AllowPrimer.py::test_AllowPrimer python3.14-dnachisel-3.2.16> tests/test_scenarios/test_primers_collection.py::test_primers_collection_example python3.14-dnachisel-3.2.16> /nix/store/gwzskzza0qgjzg1ifqfpwl6nyrpfp73y-python3.14-primer3-py-2.3.1/lib/python3.14/site-packages/primer3/bindings.py:305: UserWarning: Function deprecated please use "calc_heterodimer" instead python3.14-dnachisel-3.2.16> return THERMO_ANALYSIS.calcHeterodimer( python3.14-dnachisel-3.2.16> python3.14-dnachisel-3.2.16> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html python3.14-dnachisel-3.2.16> ================ 147 passed, 2 deselected, 5 warnings in 11.93s ================ python3.14-dnachisel-3.2.16> Finished executing pytestCheckPhase python3.14-dnachisel-3.2.16> Running phase: pytestcachePhase python3.14-dnachisel-3.2.16> Running phase: pytestRemoveBytecodePhase post-build step Route build to niks3: ok Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org time=2026-10-03T21:16:27.155+09:00 level=INFO msg="Uploading 30 paths to niks3.sjanglab.org (118 already cached)" time=2026-10-03T21:16:27.155+09:00 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