these 12 derivations will be built: /nix/store/0fllzw3sj33y83vzj6rg0qvp2i4illbn-python3-3.14.7-env.drv /nix/store/m3j3rbkpqwh9a165qd0f8n3pcbhliry6-pythoncheck.sh.drv /nix/store/1a9j567azmf54fvpqg35cgd1rshhv79q-pythoncheck.sh.drv /nix/store/4rmisaqyivim447dgwmg9cpkhc9hijxx-python3-3.14.7-env.drv /nix/store/9ca0mn941fy74iba3z1criw7n4dm8cdp-source.drv /nix/store/w1wljm0p7kvpabqqxv5h4cpdppfh13pq-pythoncheck.sh.drv /nix/store/wjikwv559rrmxbwqq1wh73yaxh940b6c-pythoncheck.sh.drv /nix/store/dldfacn97p3awvdkc3rwg30b5dwmdcbv-replace-workspace-values.drv /nix/store/zgj7nzak04cdgqkw5j0yyzznvf8mg72a-fetch-cargo-vendor-util.drv /nix/store/amrfhvr02bivv34a8gkp9kvgvf96gxl0-biotite-1.7.1-vendor-vendor.drv /nix/store/vlypz0asa6j2zrmyrpm76xn2pwh35mly-python3.14-biotraj-1.2.2.drv /nix/store/dhmv04af0qwlw7wgdg299wmf040lawky-python3.14-biotite-1.7.1.drv these 23 paths will be fetched (39.1 MiB download, 168.1 MiB unpacked): /nix/store/9yyl0xcdzdzcazayqz6pcwjxrp43s1cw-bin /nix/store/lxa1kx2xkr5gz4ckrm3i0p7v943aydkk-dash-0.5.13.5 /nix/store/p6vf82l56myrsdc6mpqb66akrlc6996y-python3.14-certifi-2026.06.17 /nix/store/5sy15nk1s1ip12s7f71s7ymff77vk25s-python3.14-charset-normalizer-3.4.9 /nix/store/ijk3r31f450cqnjas10hnz6fl2ag6wdv-python3.14-charset-normalizer-3.4.9 /nix/store/i79m3cjpslr7ghhkj1w1wi2xc3ghqf63-python3.14-flake8-7.3.0 /nix/store/3wfkjzcjdnxjy4nic8k6g8nr35brmpy4-python3.14-idna-3.18 /nix/store/65xbgdqwi6xv20da0aiv3c03vlb6w7vi-python3.14-mccabe-0.7.0 /nix/store/wpyhlx5rf4disg18myb8sncxdl9hg456-python3.14-msgpack-1.2.1 /nix/store/cys50sr795fdl6wvs802i29bir0gn8pl-python3.14-networkx-3.6.1 /nix/store/34nilhga0rfdsg90jwvh3y3bsisklqg8-python3.14-pycodestyle-2.14.0 /nix/store/x5d9jl8wk20i2fc6w1lbvdp1awb82xyl-python3.14-pyflakes-3.4.0 /nix/store/97gg5xn6nwd61dyxrk8jm04mzk4zfcz6-python3.14-pysocks-1.7.1 /nix/store/k2bghw14yj34mjbqx3s837314fw75bp9-python3.14-requests-2.34.2 /nix/store/lfrp6a303yb3b5g9xhr3xvc8yf1h9q9d-python3.14-requests-2.34.2 /nix/store/n5vlrwmyd1s1s5pv61s7krr6zva9isjv-python3.14-scipy-1.18.1 /nix/store/a2lf0y9xxc69hzvz913r29z18wdxgcri-python3.14-semantic-version-2.10.0 /nix/store/14wzal4wij42sl392kv2v1p50nq1ksa7-python3.14-setuptools-rust-1.13.0 /nix/store/s5ibqawaxmvvcz8zx6diyq01b8w5yszk-python3.14-setuptools-scm-10.0.5 /nix/store/jabzq840mk1hz1v00r563gd1pf829agg-python3.14-tomli-w-1.2.0 /nix/store/qbjksw36db3nh817yr6q5mkdiigj0zj5-python3.14-urllib3-2.7.0 /nix/store/30xdi6i9iza30gldpqsfpqpkbb336ycg-python3.14-vcs-versioning-1.1.1 /nix/store/r22qfr7pkzplgj8di1jzyrn5qqyrmhqj-qhull-2020.2 building '/nix/store/b4w9xpkrj9pcw066ksxk5ixq3zcp1kac-source.drv' source> structuredAttrs is enabled source> source> trying https://github.com/biotite-dev/biotraj/archive/refs/tags/v1.2.2.tar.gz source> % Total % Received % Xferd Average Speed Time Time Time Current source> Dload Upload Total Spent Left Speed source> source> 0 0 0 0 0 0 0 0 0 source> 0 0 0 0 0 0 0 0 0 source> 0 0 0 0 0 0 0 0 0 source> source> 0 0 0 0 0 0 0 0 0 source> 100 3.35M 0 3.35M 0 0 3.43M 0 0 source> 100 3.35M 0 3.35M 0 0 3.43M 0 0 source> 100 3.35M 0 3.35M 0 0 3.43M 0 0 source> unpacking source archive /build/download.tar.gz building '/nix/store/vlypz0asa6j2zrmyrpm76xn2pwh35mly-python3.14-biotraj-1.2.2.drv' python3.14-biotraj-1.2.2> Sourcing python-remove-tests-dir-hook python3.14-biotraj-1.2.2> Sourcing python-catch-conflicts-hook.sh python3.14-biotraj-1.2.2> Sourcing python-remove-bin-bytecode-hook.sh python3.14-biotraj-1.2.2> Sourcing pypa-build-hook python3.14-biotraj-1.2.2> Using pypaBuildPhase python3.14-biotraj-1.2.2> Sourcing python-runtime-deps-check-hook python3.14-biotraj-1.2.2> Using pythonRuntimeDepsCheckHook python3.14-biotraj-1.2.2> Sourcing pypa-install-hook python3.14-biotraj-1.2.2> Using pypaInstallPhase python3.14-biotraj-1.2.2> Sourcing python-imports-check-hook.sh python3.14-biotraj-1.2.2> Using pythonImportsCheckPhase python3.14-biotraj-1.2.2> Sourcing python-metadata-check-hook.sh python3.14-biotraj-1.2.2> Using pythonMetadataCheckPhase python3.14-biotraj-1.2.2> Sourcing python-namespaces-hook python3.14-biotraj-1.2.2> Sourcing python-catch-conflicts-hook.sh python3.14-biotraj-1.2.2> Using checkPhaseThreadLimitHook python3.14-biotraj-1.2.2> Running phase: unpackPhase python3.14-biotraj-1.2.2> unpacking source archive /nix/store/dhbi2zj1gg6nzx8bzax4b4x0g46x62ha-source python3.14-biotraj-1.2.2> source root is source python3.14-biotraj-1.2.2> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/util.py" python3.14-biotraj-1.2.2> Running phase: patchPhase python3.14-biotraj-1.2.2> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-biotraj-1.2.2> Running phase: configurePhase python3.14-biotraj-1.2.2> no configure script, doing nothing python3.14-biotraj-1.2.2> Running phase: buildPhase python3.14-biotraj-1.2.2> Executing pypaBuildPhase python3.14-biotraj-1.2.2> Including all tracked files automatically python3.14-biotraj-1.2.2> Creating a wheel... python3.14-biotraj-1.2.2> pypa build flags: --no-isolation --outdir dist/ --wheel python3.14-biotraj-1.2.2> * Getting build dependencies for wheel... python3.14-biotraj-1.2.2> [1/3] Cythonizing src/biotraj/dcd.pyx python3.14-biotraj-1.2.2> [2/3] Cythonizing src/biotraj/trr.pyx python3.14-biotraj-1.2.2> [3/3] Cythonizing src/biotraj/xtc.pyx python3.14-biotraj-1.2.2> /nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> By 2027-Feb-18, you need to update your project and remove deprecated calls python3.14-biotraj-1.2.2> or your builds will no longer be supported. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> corresp(dist, value, root_dir) building '/nix/store/dldfacn97p3awvdkc3rwg30b5dwmdcbv-replace-workspace-values.drv' python3.14-biotraj-1.2.2> /nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> Please consider removing the following classifiers in favor of a SPDX license expression: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> dist._finalize_license_expression() python3.14-biotraj-1.2.2> /nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> Please consider removing the following classifiers in favor of a SPDX license expression: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> self._finalize_license_expression() python3.14-biotraj-1.2.2> running egg_info python3.14-biotraj-1.2.2> creating src/biotraj.egg-info python3.14-biotraj-1.2.2> writing src/biotraj.egg-info/PKG-INFO python3.14-biotraj-1.2.2> writing dependency_links to src/biotraj.egg-info/dependency_links.txt python3.14-biotraj-1.2.2> writing requirements to src/biotraj.egg-info/requires.txt python3.14-biotraj-1.2.2> writing top-level names to src/biotraj.egg-info/top_level.txt python3.14-biotraj-1.2.2> writing manifest file 'src/biotraj.egg-info/SOURCES.txt' python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> /nix/store/30xdi6i9iza30gldpqsfpqpkbb336ycg-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. python3.14-biotraj-1.2.2> return get_active_overrides().subprocess_timeout python3.14-biotraj-1.2.2> reading manifest file 'src/biotraj.egg-info/SOURCES.txt' python3.14-biotraj-1.2.2> reading manifest template 'MANIFEST.in' python3.14-biotraj-1.2.2> adding license file 'LICENSE.rst' python3.14-biotraj-1.2.2> writing manifest file 'src/biotraj.egg-info/SOURCES.txt' python3.14-biotraj-1.2.2> * Building wheel... python3.14-biotraj-1.2.2> [1/3] Cythonizing src/biotraj/dcd.pyx python3.14-biotraj-1.2.2> [2/3] Cythonizing src/biotraj/trr.pyx python3.14-biotraj-1.2.2> [3/3] Cythonizing src/biotraj/xtc.pyx python3.14-biotraj-1.2.2> /nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> By 2027-Feb-18, you need to update your project and remove deprecated calls python3.14-biotraj-1.2.2> or your builds will no longer be supported. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> corresp(dist, value, root_dir) python3.14-biotraj-1.2.2> /nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> Please consider removing the following classifiers in favor of a SPDX license expression: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> dist._finalize_license_expression() python3.14-biotraj-1.2.2> /nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> Please consider removing the following classifiers in favor of a SPDX license expression: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+) python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> self._finalize_license_expression() python3.14-biotraj-1.2.2> running bdist_wheel python3.14-biotraj-1.2.2> running build python3.14-biotraj-1.2.2> running build_py python3.14-biotraj-1.2.2> creating build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/__init__.py -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/netcdf.py -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/utils.py -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/version.py -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> running egg_info python3.14-biotraj-1.2.2> writing src/biotraj.egg-info/PKG-INFO python3.14-biotraj-1.2.2> writing dependency_links to src/biotraj.egg-info/dependency_links.txt python3.14-biotraj-1.2.2> writing requirements to src/biotraj.egg-info/requires.txt python3.14-biotraj-1.2.2> writing top-level names to src/biotraj.egg-info/top_level.txt python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> dependency /nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative python3.14-biotraj-1.2.2> /nix/store/30xdi6i9iza30gldpqsfpqpkbb336ycg-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. python3.14-biotraj-1.2.2> return get_active_overrides().subprocess_timeout python3.14-biotraj-1.2.2> reading manifest file 'src/biotraj.egg-info/SOURCES.txt' python3.14-biotraj-1.2.2> reading manifest template 'MANIFEST.in' python3.14-biotraj-1.2.2> adding license file 'LICENSE.rst' python3.14-biotraj-1.2.2> writing manifest file 'src/biotraj.egg-info/SOURCES.txt' python3.14-biotraj-1.2.2> /nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'biotraj.include' is absent from the `packages` configuration. python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> ############################ python3.14-biotraj-1.2.2> # Package would be ignored # python3.14-biotraj-1.2.2> ############################ python3.14-biotraj-1.2.2> Python recognizes 'biotraj.include' as an importable package[^1], python3.14-biotraj-1.2.2> but it is absent from setuptools' `packages` configuration. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> This leads to an ambiguous overall configuration. If you want to distribute this python3.14-biotraj-1.2.2> package, please make sure that 'biotraj.include' is explicitly added python3.14-biotraj-1.2.2> to the `packages` configuration field. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> Alternatively, you can also rely on setuptools' discovery methods python3.14-biotraj-1.2.2> (for example by using `find_namespace_packages(...)`/`find_namespace:` python3.14-biotraj-1.2.2> instead of `find_packages(...)`/`find:`). python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> You can read more about "package discovery" on setuptools documentation page: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> If you don't want 'biotraj.include' to be distributed and are python3.14-biotraj-1.2.2> already explicitly excluding 'biotraj.include' via python3.14-biotraj-1.2.2> `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, python3.14-biotraj-1.2.2> you can try to use `exclude_package_data`, or `include-package-data=False` in python3.14-biotraj-1.2.2> combination with a more fine grained `package-data` configuration. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> You can read more about "package data files" on setuptools documentation page: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> - https://setuptools.pypa.io/en/latest/userguide/datafiles.html python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> [^1]: For Python, any directory (with suitable naming) can be imported, python3.14-biotraj-1.2.2> even if it does not contain any `.py` files. python3.14-biotraj-1.2.2> On the other hand, currently there is no concept of package data python3.14-biotraj-1.2.2> directory, all directories are treated like packages. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> check.warn(importable) python3.14-biotraj-1.2.2> /nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'biotraj.src' is absent from the `packages` configuration. python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> ############################ python3.14-biotraj-1.2.2> # Package would be ignored # python3.14-biotraj-1.2.2> ############################ python3.14-biotraj-1.2.2> Python recognizes 'biotraj.src' as an importable package[^1], python3.14-biotraj-1.2.2> but it is absent from setuptools' `packages` configuration. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> This leads to an ambiguous overall configuration. If you want to distribute this python3.14-biotraj-1.2.2> package, please make sure that 'biotraj.src' is explicitly added python3.14-biotraj-1.2.2> to the `packages` configuration field. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> Alternatively, you can also rely on setuptools' discovery methods python3.14-biotraj-1.2.2> (for example by using `find_namespace_packages(...)`/`find_namespace:` python3.14-biotraj-1.2.2> instead of `find_packages(...)`/`find:`). python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> You can read more about "package discovery" on setuptools documentation page: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> If you don't want 'biotraj.src' to be distributed and are python3.14-biotraj-1.2.2> already explicitly excluding 'biotraj.src' via python3.14-biotraj-1.2.2> `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, python3.14-biotraj-1.2.2> you can try to use `exclude_package_data`, or `include-package-data=False` in python3.14-biotraj-1.2.2> combination with a more fine grained `package-data` configuration. python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> You can read more about "package data files" on setuptools documentation page: python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> - https://setuptools.pypa.io/en/latest/userguide/datafiles.html python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> [^1]: For Python, any directory (with suitable naming) can be imported, python3.14-biotraj-1.2.2> even if it does not contain any `.py` files. python3.14-biotraj-1.2.2> On the other hand, currently there is no concept of package data python3.14-biotraj-1.2.2> directory, all directories are treated like packages. python3.14-biotraj-1.2.2> ******************************************************************************** python3.14-biotraj-1.2.2> python3.14-biotraj-1.2.2> !! python3.14-biotraj-1.2.2> check.warn(importable) python3.14-biotraj-1.2.2> copying src/biotraj/.gitignore -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/dcd.c -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/dcd.pyx -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/dcdlib.pxd -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/trr.c -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/trr.pyx -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/trrlib.pxd -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/xdrlib.pxd -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/xtc.c -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> copying src/biotraj/xtc.pyx -> build/lib.linux-x86_64-cpython-314/biotraj python3.14-biotraj-1.2.2> creating build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/dcdplugin.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/endianswap.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/fastio.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/largefiles.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/molfile_plugin.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/trr_header.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/vmdplugin.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/xdr_seek.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/xdrfile.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/xdrfile_trr.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> copying src/biotraj/include/xdrfile_xtc.h -> build/lib.linux-x86_64-cpython-314/biotraj/include python3.14-biotraj-1.2.2> creating build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/.gitignore -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/README -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/dcdplugin.c -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/dcdplugin.license -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/xdr_seek.c -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/xdrfile.c -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/xdrfile_trr.c -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> copying src/biotraj/src/xdrfile_xtc.c -> build/lib.linux-x86_64-cpython-314/biotraj/src python3.14-biotraj-1.2.2> running build_ext python3.14-biotraj-1.2.2> building 'biotraj.xtc' extension python3.14-biotraj-1.2.2> creating build/temp.linux-x86_64-cpython-314/src/biotraj/src python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotraj/src/xdr_seek.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdr_seek.o python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotraj/src/xdrfile.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile.o python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘sizeofint’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:495:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 495 | while (size >= num && num_of_bits < 32) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘sizeofints’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:541:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 541 | while (bytes[num_of_bytes] >= num) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘encodeints’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:650:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 650 | if (num_of_bits >= num_of_bytes * 8) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:652:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 652 | for (i = 0; i < num_of_bytes; i++) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:660:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 660 | for (i = 0; i < num_of_bytes-1; i++) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘decodebits’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:700:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 700 | if (lastbits < num_of_bits) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:815:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 815 | if(size3>xfp->buf1size) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:869:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 869 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:869:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 869 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:788:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 788 | int smallnum, smaller, larger, i, is_smaller, run; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:785:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 785 | int smallidx, minidx, maxidx; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1027:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1027 | if(size3>xfp->buf1size) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1150:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1150 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1156:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1156 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1156:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 1156 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1288:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1288 | if(tmp==(unsigned int)buf2[0]) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1016:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 1016 | int errval=1; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1328 | if(size3>xfp->buf1size) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1383:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1383 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1383:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 1383 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1305:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 1305 | int smallnum, smaller, larger, i, is_smaller, run; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1302:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 1302 | int smallidx, minidx, maxidx; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1519:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1519 | if(size3>xfp->buf1size) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1634:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1634 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1639:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1639 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1639:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 1639 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1749:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1749 | if(tmp==(unsigned int)buf2[0]) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1509:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 1509 | int errval=1; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotraj/src/xdrfile_xtc.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile_xtc.o python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_xtc.c: In function ‘xtc_coord’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_xtc.c:66:15: warning: unused variable ‘j’ [-Wunused-variable] python3.14-biotraj-1.2.2> 66 | int i,j,result; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_xtc.c:66:13: warning: unused variable ‘i’ [-Wunused-variable] python3.14-biotraj-1.2.2> 66 | int i,j,result; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_xtc.c: In function ‘read_xtc_nframes’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_xtc.c:119:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] python3.14-biotraj-1.2.2> 119 | if (NULL == xd) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_xtc.c:122:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ python3.14-biotraj-1.2.2> 122 | do { python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotraj/xtc.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/xtc.o building '/nix/store/amrfhvr02bivv34a8gkp9kvgvf96gxl0-biotite-1.7.1-vendor-vendor.drv' biotite-1.7.1-vendor-vendor> structuredAttrs is enabled python3.14-biotraj-1.2.2> In function ‘__Pyx_PyLong_From_int’, python3.14-biotraj-1.2.2> inlined from ‘__pyx_pf_7biotraj_3xtc_17XTCTrajectoryFile_14_write’ at src/biotraj/xtc.c:12402:16, python3.14-biotraj-1.2.2> inlined from ‘__pyx_pw_7biotraj_3xtc_17XTCTrajectoryFile_15_write’ at src/biotraj/xtc.c:12088:13: python3.14-biotraj-1.2.2> src/biotraj/xtc.c:24453:22: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 24453 | return PyLong_FromLong((long) value); python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c: In function ‘__pyx_pw_7biotraj_3xtc_17XTCTrajectoryFile_15_write’: python3.14-biotraj-1.2.2> src/biotraj/xtc.c:12110:7: note: ‘__pyx_v_status’ was declared here python3.14-biotraj-1.2.2> 12110 | int __pyx_v_status; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~ biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/autocfg-1.5.1 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/either-1.18.0 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/heck-0.5.0 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/indoc-2.0.7 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/itertools-0.14.0 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.190 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/ndarray-0.17.2 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/num-complex-0.4.6 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/num-integer-0.1.47 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/once_cell-1.21.4 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/portable-atomic-1.15.0 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/portable-atomic-util-0.2.8 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-0.27.2 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/rawpointer-0.2.1 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/rustc-hash-2.1.3 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/rustversion-1.0.23 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/smallvec-1.16.2 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/syn-2.0.119 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/unicode-ident-1.0.26 biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/02qxni4li5sqwd7qhn8jbz2k7d58s086-biotite-1.7.1-vendor-vendor/source-registry-0/unindent-0.2.4 python3.14-biotraj-1.2.2> src/biotraj/xtc.c: In function ‘__pyx_pf_7biotraj_3xtc_17XTCTrajectoryFile_10_read’: python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10176:17: warning: ‘__pyx_pybuffernd_framebuffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10176 | } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_framebuffer.diminfo[0].shape)) __pyx_t_5 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8812:21: note: ‘__pyx_pybuffernd_framebuffer.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 8812 | __Pyx_LocalBuf_ND __pyx_pybuffernd_framebuffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10180:17: warning: ‘__pyx_pybuffernd_framebuffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10180 | } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_framebuffer.diminfo[1].shape)) __pyx_t_5 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8812:21: note: ‘__pyx_pybuffernd_framebuffer.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 8812 | __Pyx_LocalBuf_ND __pyx_pybuffernd_framebuffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10522:23: warning: ‘__pyx_pybuffernd_box_stride.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10522 | } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_box_stride.diminfo[0].shape)) __pyx_t_5 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8810:21: note: ‘__pyx_pybuffernd_box_stride.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 8810 | __Pyx_LocalBuf_ND __pyx_pybuffernd_box_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10526:23: warning: ‘__pyx_pybuffernd_box_stride.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10526 | } else if (unlikely(__pyx_t_24 >= __pyx_pybuffernd_box_stride.diminfo[1].shape)) __pyx_t_5 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8810:21: note: ‘__pyx_pybuffernd_box_stride.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 8810 | __Pyx_LocalBuf_ND __pyx_pybuffernd_box_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10530:23: warning: ‘__pyx_pybuffernd_box_stride.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10530 | } else if (unlikely(__pyx_t_27 >= __pyx_pybuffernd_box_stride.diminfo[2].shape)) __pyx_t_5 = 2; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8810:21: note: ‘__pyx_pybuffernd_box_stride.diminfo[2].shape’ was declared here python3.14-biotraj-1.2.2> 8810 | __Pyx_LocalBuf_ND __pyx_pybuffernd_box_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10568:23: warning: ‘__pyx_pybuffernd_prec_stride.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10568 | } else if (unlikely(__pyx_t_31 >= __pyx_pybuffernd_prec_stride.diminfo[0].shape)) __pyx_t_5 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8816:21: note: ‘__pyx_pybuffernd_prec_stride.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 8816 | __Pyx_LocalBuf_ND __pyx_pybuffernd_prec_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10492:23: warning: ‘__pyx_pybuffernd_step_stride.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10492 | } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_step_stride.diminfo[0].shape)) __pyx_t_5 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8820:21: note: ‘__pyx_pybuffernd_step_stride.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 8820 | __Pyx_LocalBuf_ND __pyx_pybuffernd_step_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10510:23: warning: ‘__pyx_pybuffernd_time_stride.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10510 | } else if (unlikely(__pyx_t_21 >= __pyx_pybuffernd_time_stride.diminfo[0].shape)) __pyx_t_5 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8824:21: note: ‘__pyx_pybuffernd_time_stride.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 8824 | __Pyx_LocalBuf_ND __pyx_pybuffernd_time_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10550:23: warning: ‘__pyx_pybuffernd_xyz_stride.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10550 | } else if (unlikely(__pyx_t_28 >= __pyx_pybuffernd_xyz_stride.diminfo[0].shape)) __pyx_t_5 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8828:21: note: ‘__pyx_pybuffernd_xyz_stride.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 8828 | __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10554:23: warning: ‘__pyx_pybuffernd_xyz_stride.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10554 | } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_stride.diminfo[1].shape)) __pyx_t_5 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8828:21: note: ‘__pyx_pybuffernd_xyz_stride.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 8828 | __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:10558:23: warning: ‘__pyx_pybuffernd_xyz_stride.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 10558 | } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_stride.diminfo[2].shape)) __pyx_t_5 = 2; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/xtc.c:8828:21: note: ‘__pyx_pybuffernd_xyz_stride.diminfo[2].shape’ was declared here python3.14-biotraj-1.2.2> 8828 | __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_stride; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdr_seek.o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile.o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile_xtc.o build/temp.linux-x86_64-cpython-314/src/biotraj/xtc.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotraj/xtc.cpython-314-x86_64-linux-gnu.so python3.14-biotraj-1.2.2> building 'biotraj.trr' extension python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotraj/src/xdr_seek.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdr_seek.o python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotraj/src/xdrfile.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile.o python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘sizeofint’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:495:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 495 | while (size >= num && num_of_bits < 32) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘sizeofints’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:541:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 541 | while (bytes[num_of_bytes] >= num) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘encodeints’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:650:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 650 | if (num_of_bits >= num_of_bytes * 8) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:652:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 652 | for (i = 0; i < num_of_bytes; i++) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:660:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 660 | for (i = 0; i < num_of_bytes-1; i++) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘decodebits’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:700:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 700 | if (lastbits < num_of_bits) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:815:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 815 | if(size3>xfp->buf1size) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:869:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 869 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:869:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 869 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:788:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 788 | int smallnum, smaller, larger, i, is_smaller, run; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:785:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 785 | int smallidx, minidx, maxidx; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1027:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1027 | if(size3>xfp->buf1size) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1150:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1150 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1156:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1156 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1156:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 1156 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1288:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1288 | if(tmp==(unsigned int)buf2[0]) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1016:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 1016 | int errval=1; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1328:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1328 | if(size3>xfp->buf1size) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1383:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1383 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1383:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 1383 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1305:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 1305 | int smallnum, smaller, larger, i, is_smaller, run; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1302:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 1302 | int smallidx, minidx, maxidx; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1519:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1519 | if(size3>xfp->buf1size) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1634:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1634 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1639:26: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1639 | maxidx = (LASTIDX | ^ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1639:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare] python3.14-biotraj-1.2.2> 1639 | maxidx = (LASTIDX | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1749:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 1749 | if(tmp==(unsigned int)buf2[0]) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile.c:1509:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 1509 | int errval=1; python3.14-biotraj-1.2.2> | ^~~~~~ python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotraj/src/xdrfile_trr.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile_trr.o python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_trr.c: In function ‘do_trnheader’: python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] python3.14-biotraj-1.2.2> 111 | if (slen != strlen(version)+1) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] python3.14-biotraj-1.2.2> 121 | if (xdrfile_write_string(version,xd) != (strlen(version)+1) ) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotraj/trr.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/trr.o python3.14-biotraj-1.2.2> src/biotraj/trr.c: In function ‘__pyx_pf_7biotraj_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’: python3.14-biotraj-1.2.2> src/biotraj/trr.c:15983:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘long int’} [-Wsign-compare] python3.14-biotraj-1.2.2> 15983 | __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_15); python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> In function ‘__Pyx_PyLong_From_int’, python3.14-biotraj-1.2.2> inlined from ‘__pyx_pf_7biotraj_3trr_17TRRTrajectoryFile_16_write’ at src/biotraj/trr.c:14366:16, python3.14-biotraj-1.2.2> inlined from ‘__pyx_pw_7biotraj_3trr_17TRRTrajectoryFile_17_write’ at src/biotraj/trr.c:13796:13: python3.14-biotraj-1.2.2> src/biotraj/trr.c:26388:22: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 26388 | return PyLong_FromLong((long) value); python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c: In function ‘__pyx_pw_7biotraj_3trr_17TRRTrajectoryFile_17_write’: python3.14-biotraj-1.2.2> src/biotraj/trr.c:13826:7: note: ‘__pyx_v_status’ was declared here python3.14-biotraj-1.2.2> 13826 | int __pyx_v_status; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c: In function ‘__pyx_pf_7biotraj_3trr_17TRRTrajectoryFile_12_read’: python3.14-biotraj-1.2.2> src/biotraj/trr.c:11362:12: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11362 | if (unlikely(__pyx_t_6 != -1)) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9458:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 9458 | __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11361:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11361 | } else if (unlikely(__pyx_t_23 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_6 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9458:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 9458 | __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11310:12: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11310 | if (unlikely(__pyx_t_6 != -1)) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9474:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 9474 | __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11309:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11309 | } else if (unlikely(__pyx_t_22 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_6 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9474:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 9474 | __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11469:10: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11469 | if (unlikely(__pyx_t_6 != -1)) { python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9478:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 9478 | __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11468:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11468 | } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_6 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9478:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 9478 | __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11071:19: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11071 | } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_vel.diminfo[0].shape)) __pyx_t_6 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9472:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 9472 | __Pyx_LocalBuf_ND __pyx_pybuffernd_vel; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:2556:90: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 2556 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11084:42: note: in expansion of macro ‘__Pyx_BufPtrCContig3d’ python3.14-biotraj-1.2.2> 11084 | __pyx_v_frame_vel = ((rvec *)(&(*__Pyx_BufPtrCContig3d(__pyx_t_5numpy_float32_t *, __pyx_pybuffernd_vel.rcbuffer->pybuffer.buf, __pyx_t_15, __pyx_pybuffernd_vel.diminfo[0].strides, __pyx_t_16, __pyx_pybuffernd_vel.diminfo[1].strides, __pyx_t_17, __pyx_pybuffernd_vel.diminfo[2].strides)))); python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9472:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here python3.14-biotraj-1.2.2> 9472 | __Pyx_LocalBuf_ND __pyx_pybuffernd_vel; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11075:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11075 | } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_6 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9472:21: note: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 9472 | __Pyx_LocalBuf_ND __pyx_pybuffernd_vel; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11079:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11079 | } else if (unlikely(__pyx_t_17 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_6 = 2; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9472:21: note: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ was declared here python3.14-biotraj-1.2.2> 9472 | __Pyx_LocalBuf_ND __pyx_pybuffernd_vel; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11128:19: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11128 | } else if (unlikely(__pyx_t_15 >= __pyx_pybuffernd_forces.diminfo[0].shape)) __pyx_t_6 = 0; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9456:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ was declared here python3.14-biotraj-1.2.2> 9456 | __Pyx_LocalBuf_ND __pyx_pybuffernd_forces; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:2556:90: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 2556 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2) python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11141:45: note: in expansion of macro ‘__Pyx_BufPtrCContig3d’ python3.14-biotraj-1.2.2> 11141 | __pyx_v_frame_forces = ((rvec *)(&(*__Pyx_BufPtrCContig3d(__pyx_t_5numpy_float32_t *, __pyx_pybuffernd_forces.rcbuffer->pybuffer.buf, __pyx_t_15, __pyx_pybuffernd_forces.diminfo[0].strides, __pyx_t_17, __pyx_pybuffernd_forces.diminfo[1].strides, __pyx_t_16, __pyx_pybuffernd_forces.diminfo[2].strides)))); python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9456:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here python3.14-biotraj-1.2.2> 9456 | __Pyx_LocalBuf_ND __pyx_pybuffernd_forces; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11132:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11132 | } else if (unlikely(__pyx_t_17 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_6 = 1; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9456:21: note: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ was declared here python3.14-biotraj-1.2.2> 9456 | __Pyx_LocalBuf_ND __pyx_pybuffernd_forces; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/trr.c:11136:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 11136 | } else if (unlikely(__pyx_t_16 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_6 = 2; python3.14-biotraj-1.2.2> | ^ python3.14-biotraj-1.2.2> src/biotraj/trr.c:9456:21: note: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ was declared here python3.14-biotraj-1.2.2> 9456 | __Pyx_LocalBuf_ND __pyx_pybuffernd_forces; python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdr_seek.o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile.o build/temp.linux-x86_64-cpython-314/src/biotraj/src/xdrfile_trr.o build/temp.linux-x86_64-cpython-314/src/biotraj/trr.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotraj/trr.cpython-314-x86_64-linux-gnu.so python3.14-biotraj-1.2.2> building 'biotraj.dcd' extension python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotraj/dcd.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/dcd.o python3.14-biotraj-1.2.2> In file included from src/biotraj/include/dcdplugin.h:1, python3.14-biotraj-1.2.2> from src/biotraj/dcd.c:1164: python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h: In function ‘fio_fread’: python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:401:14: warning: variable ‘len’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 401 | fio_size_t len = 0; python3.14-biotraj-1.2.2> | ^~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h: In function ‘fio_fwrite’: python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:436:14: warning: variable ‘len’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 436 | fio_size_t len = 0; python3.14-biotraj-1.2.2> | ^~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h: At top level: python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 474 | static int fio_write_str(fio_fd fd, const char *str) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 470 | static int fio_read_int32(fio_fd fd, int *i) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 466 | static int fio_write_int32(fio_fd fd, int i) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 457 | static fio_size_t fio_ftell(fio_fd fd) { python3.14-biotraj-1.2.2> | ^~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) { python3.14-biotraj-1.2.2> | ^~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) { python3.14-biotraj-1.2.2> | ^~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 394 | static int fio_fclose(fio_fd fd) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 366 | static int fio_open(const char *filename, int mode, fio_fd *fd) { python3.14-biotraj-1.2.2> | ^~~~~~~~ python3.14-biotraj-1.2.2> In function ‘__Pyx_PyLong_From_int’, python3.14-biotraj-1.2.2> inlined from ‘__pyx_pf_7biotraj_3dcd_17DCDTrajectoryFile_18read’ at src/biotraj/dcd.c:9027:17: python3.14-biotraj-1.2.2> src/biotraj/dcd.c:18076:22: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized] python3.14-biotraj-1.2.2> 18076 | return PyLong_FromLong((long) value); python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/dcd.c: In function ‘__pyx_pf_7biotraj_3dcd_17DCDTrajectoryFile_18read’: python3.14-biotraj-1.2.2> src/biotraj/dcd.c:7765:7: note: ‘__pyx_v_i’ was declared here python3.14-biotraj-1.2.2> 7765 | int __pyx_v_i; python3.14-biotraj-1.2.2> | ^~~~~~~~~ python3.14-biotraj-1.2.2> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Isrc/biotraj -Isrc/biotraj/include/ -Isrc/biotraj/ -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotraj/src/dcdplugin.c -o build/temp.linux-x86_64-cpython-314/src/biotraj/src/dcdplugin.o python3.14-biotraj-1.2.2> In file included from src/biotraj/src/dcdplugin.c:46: python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h: In function ‘fio_fread’: python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:401:14: warning: variable ‘len’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 401 | fio_size_t len = 0; python3.14-biotraj-1.2.2> | ^~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h: In function ‘fio_fwrite’: python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:436:14: warning: variable ‘len’ set but not used [-Wunused-but-set-variable=] python3.14-biotraj-1.2.2> 436 | fio_size_t len = 0; python3.14-biotraj-1.2.2> | ^~~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c: In function ‘read_dcdheader’: python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:129:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 129 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:146:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 146 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:164:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 164 | if (input_integer[0] != dcdcordmagic) { python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:341:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 341 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:358:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 358 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c: In function ‘read_dcdstep’: python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:526:17: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 526 | if (readlen != (rec_scale*6*sizeof(int) + 3*N*sizeof(float))) python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:540:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 540 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> src/biotraj/src/dcdplugin.c:544:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] python3.14-biotraj-1.2.2> 544 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT; python3.14-biotraj-1.2.2> | ^~ python3.14-biotraj-1.2.2> In file included from src/biotraj/src/dcdplugin.c:55: python3.14-biotraj-1.2.2> src/biotraj/include/endianswap.h: At top level: python3.14-biotraj-1.2.2> src/biotraj/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 96 | static void swap2_aligned(void *v, long ndata) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 32 | static void swap2_unaligned(void *v, long ndata) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 474 | static int fio_write_str(fio_fd fd, const char *str) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~ python3.14-biotraj-1.2.2> src/biotraj/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function] python3.14-biotraj-1.2.2> 470 | static int fio_read_int32(fio_fd fd, int *i) { python3.14-biotraj-1.2.2> | ^~~~~~~~~~~~~~ python3.14-biotraj-1.2.2> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotraj/dcd.o build/temp.linux-x86_64-cpython-314/src/biotraj/src/dcdplugin.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotraj/dcd.cpython-314-x86_64-linux-gnu.so python3.14-biotraj-1.2.2> installing to build/bdist.linux-x86_64/wheel python3.14-biotraj-1.2.2> running install python3.14-biotraj-1.2.2> running install_lib python3.14-biotraj-1.2.2> creating build/bdist.linux-x86_64/wheel python3.14-biotraj-1.2.2> creating build/bdist.linux-x86_64/wheel/biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/__init__.py -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/netcdf.py -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/utils.py -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/version.py -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/.gitignore -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/dcd.c -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/dcd.pyx -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/dcdlib.pxd -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/trr.c -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/trr.pyx -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/trrlib.pxd -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/xdrlib.pxd -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/xtc.c -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/xtc.pyx -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> creating build/bdist.linux-x86_64/wheel/biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/dcdplugin.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/endianswap.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/fastio.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/largefiles.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/molfile_plugin.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/trr_header.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/vmdplugin.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/xdr_seek.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/xdrfile.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/xdrfile_trr.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/include/xdrfile_xtc.h -> build/bdist.linux-x86_64/wheel/./biotraj/include python3.14-biotraj-1.2.2> creating build/bdist.linux-x86_64/wheel/biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/.gitignore -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/README -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/dcdplugin.c -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/dcdplugin.license -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/xdr_seek.c -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/xdrfile.c -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/xdrfile_trr.c -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/src/xdrfile_xtc.c -> build/bdist.linux-x86_64/wheel/./biotraj/src python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/xtc.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/trr.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> copying build/lib.linux-x86_64-cpython-314/biotraj/dcd.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotraj python3.14-biotraj-1.2.2> running install_egg_info python3.14-biotraj-1.2.2> Copying src/biotraj.egg-info to build/bdist.linux-x86_64/wheel/./biotraj-1.2.2-py3.14.egg-info python3.14-biotraj-1.2.2> running install_scripts python3.14-biotraj-1.2.2> creating build/bdist.linux-x86_64/wheel/biotraj-1.2.2.dist-info/WHEEL python3.14-biotraj-1.2.2> creating '/build/source/dist/.tmp-c4p34p27/biotraj-1.2.2-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it python3.14-biotraj-1.2.2> adding 'biotraj/.gitignore' python3.14-biotraj-1.2.2> adding 'biotraj/__init__.py' python3.14-biotraj-1.2.2> adding 'biotraj/dcd.c' python3.14-biotraj-1.2.2> adding 'biotraj/dcd.cpython-314-x86_64-linux-gnu.so' python3.14-biotraj-1.2.2> adding 'biotraj/dcd.pyx' python3.14-biotraj-1.2.2> adding 'biotraj/dcdlib.pxd' python3.14-biotraj-1.2.2> adding 'biotraj/netcdf.py' python3.14-biotraj-1.2.2> adding 'biotraj/trr.c' python3.14-biotraj-1.2.2> adding 'biotraj/trr.cpython-314-x86_64-linux-gnu.so' python3.14-biotraj-1.2.2> adding 'biotraj/trr.pyx' python3.14-biotraj-1.2.2> adding 'biotraj/trrlib.pxd' python3.14-biotraj-1.2.2> adding 'biotraj/utils.py' python3.14-biotraj-1.2.2> adding 'biotraj/version.py' python3.14-biotraj-1.2.2> adding 'biotraj/xdrlib.pxd' python3.14-biotraj-1.2.2> adding 'biotraj/xtc.c' python3.14-biotraj-1.2.2> adding 'biotraj/xtc.cpython-314-x86_64-linux-gnu.so' python3.14-biotraj-1.2.2> adding 'biotraj/xtc.pyx' python3.14-biotraj-1.2.2> adding 'biotraj/include/dcdplugin.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/endianswap.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/fastio.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/largefiles.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/molfile_plugin.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/trr_header.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/vmdplugin.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/xdr_seek.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/xdrfile.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/xdrfile_trr.h' python3.14-biotraj-1.2.2> adding 'biotraj/include/xdrfile_xtc.h' python3.14-biotraj-1.2.2> adding 'biotraj/src/.gitignore' python3.14-biotraj-1.2.2> adding 'biotraj/src/README' python3.14-biotraj-1.2.2> adding 'biotraj/src/dcdplugin.c' python3.14-biotraj-1.2.2> adding 'biotraj/src/dcdplugin.license' python3.14-biotraj-1.2.2> adding 'biotraj/src/xdr_seek.c' python3.14-biotraj-1.2.2> adding 'biotraj/src/xdrfile.c' python3.14-biotraj-1.2.2> adding 'biotraj/src/xdrfile_trr.c' python3.14-biotraj-1.2.2> adding 'biotraj/src/xdrfile_xtc.c' python3.14-biotraj-1.2.2> adding 'biotraj-1.2.2.dist-info/licenses/LICENSE.rst' python3.14-biotraj-1.2.2> adding 'biotraj-1.2.2.dist-info/METADATA' python3.14-biotraj-1.2.2> adding 'biotraj-1.2.2.dist-info/WHEEL' python3.14-biotraj-1.2.2> adding 'biotraj-1.2.2.dist-info/top_level.txt' python3.14-biotraj-1.2.2> adding 'biotraj-1.2.2.dist-info/RECORD' python3.14-biotraj-1.2.2> removing build/bdist.linux-x86_64/wheel python3.14-biotraj-1.2.2> Successfully built biotraj-1.2.2-cp314-cp314-linux_x86_64.whl python3.14-biotraj-1.2.2> Finished creating a wheel... python3.14-biotraj-1.2.2> Finished executing pypaBuildPhase python3.14-biotraj-1.2.2> buildPhase completed in 1 minutes 1 seconds python3.14-biotraj-1.2.2> Running phase: pythonRuntimeDepsCheckHook python3.14-biotraj-1.2.2> Executing pythonRuntimeDepsCheck python3.14-biotraj-1.2.2> Checking runtime dependencies for biotraj-1.2.2-cp314-cp314-linux_x86_64.whl python3.14-biotraj-1.2.2> Finished executing pythonRuntimeDepsCheck python3.14-biotraj-1.2.2> Running phase: installPhase python3.14-biotraj-1.2.2> Executing pypaInstallPhase python3.14-biotraj-1.2.2> Successfully installed biotraj-1.2.2-cp314-cp314-linux_x86_64.whl python3.14-biotraj-1.2.2> Finished executing pypaInstallPhase python3.14-biotraj-1.2.2> Running phase: pythonOutputDistPhase python3.14-biotraj-1.2.2> Executing pythonOutputDistPhase python3.14-biotraj-1.2.2> Finished executing pythonOutputDistPhase python3.14-biotraj-1.2.2> Running phase: fixupPhase python3.14-biotraj-1.2.2> shrinking RPATHs of ELF executables and libraries in /nix/store/458grrzxnbip9fgpa4dks7isnbwz8vs5-python3.14-biotraj-1.2.2 python3.14-biotraj-1.2.2> shrinking /nix/store/458grrzxnbip9fgpa4dks7isnbwz8vs5-python3.14-biotraj-1.2.2/lib/python3.14/site-packages/biotraj/dcd.cpython-314-x86_64-linux-gnu.so python3.14-biotraj-1.2.2> shrinking /nix/store/458grrzxnbip9fgpa4dks7isnbwz8vs5-python3.14-biotraj-1.2.2/lib/python3.14/site-packages/biotraj/trr.cpython-314-x86_64-linux-gnu.so python3.14-biotraj-1.2.2> shrinking /nix/store/458grrzxnbip9fgpa4dks7isnbwz8vs5-python3.14-biotraj-1.2.2/lib/python3.14/site-packages/biotraj/xtc.cpython-314-x86_64-linux-gnu.so python3.14-biotraj-1.2.2> checking for references to /build/ in /nix/store/458grrzxnbip9fgpa4dks7isnbwz8vs5-python3.14-biotraj-1.2.2... python3.14-biotraj-1.2.2> patching script interpreter paths in /nix/store/458grrzxnbip9fgpa4dks7isnbwz8vs5-python3.14-biotraj-1.2.2 python3.14-biotraj-1.2.2> stripping (with command strip and flags -S -p) in /nix/store/458grrzxnbip9fgpa4dks7isnbwz8vs5-python3.14-biotraj-1.2.2/lib python3.14-biotraj-1.2.2> shrinking RPATHs of ELF executables and libraries in /nix/store/37di96im7bka3vgrawx56mgsv7flk9w7-python3.14-biotraj-1.2.2-dist python3.14-biotraj-1.2.2> checking for references to /build/ in /nix/store/37di96im7bka3vgrawx56mgsv7flk9w7-python3.14-biotraj-1.2.2-dist... python3.14-biotraj-1.2.2> patching script interpreter paths in /nix/store/37di96im7bka3vgrawx56mgsv7flk9w7-python3.14-biotraj-1.2.2-dist python3.14-biotraj-1.2.2> Executing pythonRemoveTestsDir python3.14-biotraj-1.2.2> Finished executing pythonRemoveTestsDir python3.14-biotraj-1.2.2> Running phase: pythonCatchConflictsPhase python3.14-biotraj-1.2.2> Running phase: pythonRemoveBinBytecodePhase python3.14-biotraj-1.2.2> Running phase: pythonImportsCheckPhase python3.14-biotraj-1.2.2> Executing pythonImportsCheckPhase python3.14-biotraj-1.2.2> Check whether the following modules can be imported: biotraj python3.14-biotraj-1.2.2> Running phase: pythonMetadataCheckPhase python3.14-biotraj-1.2.2> Executing pythonMetadataCheckPhase building '/nix/store/dhmv04af0qwlw7wgdg299wmf040lawky-python3.14-biotite-1.7.1.drv' python3.14-biotite-1.7.1> Sourcing python-remove-tests-dir-hook python3.14-biotite-1.7.1> Sourcing python-catch-conflicts-hook.sh python3.14-biotite-1.7.1> Sourcing python-remove-bin-bytecode-hook.sh python3.14-biotite-1.7.1> Sourcing pypa-build-hook python3.14-biotite-1.7.1> Using pypaBuildPhase python3.14-biotite-1.7.1> Sourcing python-runtime-deps-check-hook python3.14-biotite-1.7.1> Using pythonRuntimeDepsCheckHook python3.14-biotite-1.7.1> Sourcing pypa-install-hook python3.14-biotite-1.7.1> Using pypaInstallPhase python3.14-biotite-1.7.1> Sourcing python-imports-check-hook.sh python3.14-biotite-1.7.1> Using pythonImportsCheckPhase python3.14-biotite-1.7.1> Sourcing python-metadata-check-hook.sh python3.14-biotite-1.7.1> Using pythonMetadataCheckPhase python3.14-biotite-1.7.1> Sourcing python-namespaces-hook python3.14-biotite-1.7.1> Sourcing python-catch-conflicts-hook.sh python3.14-biotite-1.7.1> Sourcing setuptools-rust-hook python3.14-biotite-1.7.1> Using checkPhaseThreadLimitHook python3.14-biotite-1.7.1> Running phase: unpackPhase python3.14-biotite-1.7.1> unpacking source archive /nix/store/aa831ygkbmvxv42nkc86z3zqsk5hgkcb-source python3.14-biotite-1.7.1> source root is source python3.14-biotite-1.7.1> Executing cargoSetupPostUnpackHook python3.14-biotite-1.7.1> Finished cargoSetupPostUnpackHook python3.14-biotite-1.7.1> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/util.py" python3.14-biotite-1.7.1> Running phase: patchPhase python3.14-biotite-1.7.1> Executing cargoSetupPostPatchHook python3.14-biotite-1.7.1> Validating consistency between /build/source/Cargo.lock and /build/biotite-1.7.1-vendor-vendor/Cargo.lock python3.14-biotite-1.7.1> Finished cargoSetupPostPatchHook python3.14-biotite-1.7.1> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-biotite-1.7.1> Running phase: configurePhase python3.14-biotite-1.7.1> no configure script, doing nothing python3.14-biotite-1.7.1> Running phase: buildPhase python3.14-biotite-1.7.1> Executing pypaBuildPhase python3.14-biotite-1.7.1> Including all tracked files automatically python3.14-biotite-1.7.1> Creating a wheel... python3.14-biotite-1.7.1> pypa build flags: --no-isolation --outdir dist/ --wheel python3.14-biotite-1.7.1> * Getting build dependencies for wheel... python3.14-biotite-1.7.1> /nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:483: SetuptoolsDeprecationWarning: Cannot find any files for the given pattern. python3.14-biotite-1.7.1> !! python3.14-biotite-1.7.1> python3.14-biotite-1.7.1> ******************************************************************************** python3.14-biotite-1.7.1> Pattern 'THIRDPARTY.yml' did not match any files. python3.14-biotite-1.7.1> python3.14-biotite-1.7.1> By 2027-Feb-18, you need to update your project and remove deprecated calls python3.14-biotite-1.7.1> or your builds will no longer be supported. python3.14-biotite-1.7.1> ******************************************************************************** python3.14-biotite-1.7.1> python3.14-biotite-1.7.1> !! python3.14-biotite-1.7.1> for path in sorted(cls._find_pattern(pattern, enforce_match)) python3.14-biotite-1.7.1> running egg_info python3.14-biotite-1.7.1> creating src/biotite.egg-info python3.14-biotite-1.7.1> writing src/biotite.egg-info/PKG-INFO python3.14-biotite-1.7.1> writing dependency_links to src/biotite.egg-info/dependency_links.txt python3.14-biotite-1.7.1> writing requirements to src/biotite.egg-info/requires.txt python3.14-biotite-1.7.1> writing top-level names to src/biotite.egg-info/top_level.txt python3.14-biotite-1.7.1> writing manifest file 'src/biotite.egg-info/SOURCES.txt' python3.14-biotite-1.7.1> /nix/store/30xdi6i9iza30gldpqsfpqpkbb336ycg-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. python3.14-biotite-1.7.1> return get_active_overrides().subprocess_timeout python3.14-biotite-1.7.1> reading manifest file 'src/biotite.egg-info/SOURCES.txt' python3.14-biotite-1.7.1> reading manifest template 'MANIFEST.in' python3.14-biotite-1.7.1> warning: no files found matching 'src/biotite/structure/info/components.bcif' python3.14-biotite-1.7.1> adding license file 'LICENSE.rst' python3.14-biotite-1.7.1> writing manifest file 'src/biotite.egg-info/SOURCES.txt' python3.14-biotite-1.7.1> * Building wheel... python3.14-biotite-1.7.1> [ 1/14] Cythonizing src/biotite/sequence/align/banded.pyx python3.14-biotite-1.7.1> [ 2/14] Cythonizing src/biotite/sequence/align/kmeralphabet.pyx python3.14-biotite-1.7.1> [ 3/14] Cythonizing src/biotite/sequence/align/kmersimilarity.pyx python3.14-biotite-1.7.1> [ 4/14] Cythonizing src/biotite/sequence/align/kmertable.pyx python3.14-biotite-1.7.1> [ 5/14] Cythonizing src/biotite/sequence/align/localgapped.pyx python3.14-biotite-1.7.1> [ 6/14] Cythonizing src/biotite/sequence/align/localungapped.pyx python3.14-biotite-1.7.1> performance hint: src/biotite/sequence/align/localungapped.pyx:202:37: Index should be typed for more efficient access python3.14-biotite-1.7.1> performance hint: src/biotite/sequence/align/localungapped.pyx:202:56: Index should be typed for more efficient access python3.14-biotite-1.7.1> [ 7/14] Cythonizing src/biotite/sequence/align/multiple.pyx python3.14-biotite-1.7.1> [ 8/14] Cythonizing src/biotite/sequence/align/pairwise.pyx python3.14-biotite-1.7.1> [ 9/14] Cythonizing src/biotite/sequence/align/permutation.pyx python3.14-biotite-1.7.1> [10/14] Cythonizing src/biotite/sequence/align/selector.pyx python3.14-biotite-1.7.1> [11/14] Cythonizing src/biotite/sequence/align/tracetable.pyx python3.14-biotite-1.7.1> [12/14] Cythonizing src/biotite/sequence/phylo/nj.pyx python3.14-biotite-1.7.1> [13/14] Cythonizing src/biotite/sequence/phylo/tree.pyx python3.14-biotite-1.7.1> [14/14] Cythonizing src/biotite/sequence/phylo/upgma.pyx python3.14-biotite-1.7.1> /nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:483: SetuptoolsDeprecationWarning: Cannot find any files for the given pattern. python3.14-biotite-1.7.1> !! python3.14-biotite-1.7.1> python3.14-biotite-1.7.1> ******************************************************************************** python3.14-biotite-1.7.1> Pattern 'THIRDPARTY.yml' did not match any files. python3.14-biotite-1.7.1> python3.14-biotite-1.7.1> By 2027-Feb-18, you need to update your project and remove deprecated calls python3.14-biotite-1.7.1> or your builds will no longer be supported. python3.14-biotite-1.7.1> ******************************************************************************** python3.14-biotite-1.7.1> python3.14-biotite-1.7.1> !! python3.14-biotite-1.7.1> for path in sorted(cls._find_pattern(pattern, enforce_match)) python3.14-biotite-1.7.1> running bdist_wheel python3.14-biotite-1.7.1> running build python3.14-biotite-1.7.1> running build_py python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite python3.14-biotite-1.7.1> copying src/biotite/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite python3.14-biotite-1.7.1> copying src/biotite/copyable.py -> build/lib.linux-x86_64-cpython-314/biotite python3.14-biotite-1.7.1> copying src/biotite/file.py -> build/lib.linux-x86_64-cpython-314/biotite python3.14-biotite-1.7.1> copying src/biotite/setup_ccd.py -> build/lib.linux-x86_64-cpython-314/biotite python3.14-biotite-1.7.1> copying src/biotite/typing.py -> build/lib.linux-x86_64-cpython-314/biotite python3.14-biotite-1.7.1> copying src/biotite/visualize.py -> build/lib.linux-x86_64-cpython-314/biotite python3.14-biotite-1.7.1> copying src/biotite/version.py -> build/lib.linux-x86_64-cpython-314/biotite python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/superimpose.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/basepairs.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/bonds.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/box.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/celllist.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/chains.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/charges.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/compare.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/connect.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/density.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/dotbracket.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/error.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/filter.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/geometry.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/hbond.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/integrity.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/mechanics.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/molecules.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/pseudoknots.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/rdf.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/repair.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/residues.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/rings.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/sasa.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/segments.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/sse.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/tm.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/transform.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/util.py -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application python3.14-biotite-1.7.1> copying src/biotite/application/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application python3.14-biotite-1.7.1> copying src/biotite/application/application.py -> build/lib.linux-x86_64-cpython-314/biotite/application python3.14-biotite-1.7.1> copying src/biotite/application/localapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application python3.14-biotite-1.7.1> copying src/biotite/application/msaapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application python3.14-biotite-1.7.1> copying src/biotite/application/util.py -> build/lib.linux-x86_64-cpython-314/biotite/application python3.14-biotite-1.7.1> copying src/biotite/application/webapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/database python3.14-biotite-1.7.1> copying src/biotite/database/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database python3.14-biotite-1.7.1> copying src/biotite/database/error.py -> build/lib.linux-x86_64-cpython-314/biotite/database python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/interface python3.14-biotite-1.7.1> copying src/biotite/interface/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface python3.14-biotite-1.7.1> copying src/biotite/interface/version.py -> build/lib.linux-x86_64-cpython-314/biotite/interface python3.14-biotite-1.7.1> copying src/biotite/interface/warning.py -> build/lib.linux-x86_64-cpython-314/biotite/interface python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence python3.14-biotite-1.7.1> copying src/biotite/sequence/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence python3.14-biotite-1.7.1> copying src/biotite/sequence/alphabet.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence python3.14-biotite-1.7.1> copying src/biotite/sequence/annotation.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence python3.14-biotite-1.7.1> copying src/biotite/sequence/codon.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence python3.14-biotite-1.7.1> copying src/biotite/sequence/profile.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence python3.14-biotite-1.7.1> copying src/biotite/sequence/search.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence python3.14-biotite-1.7.1> copying src/biotite/sequence/seqtypes.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence python3.14-biotite-1.7.1> copying src/biotite/sequence/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/encoder.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/i3d.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/layers.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/pb.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/unkerasify.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/graphics python3.14-biotite-1.7.1> copying src/biotite/structure/graphics/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics python3.14-biotite-1.7.1> copying src/biotite/structure/graphics/rna.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics python3.14-biotite-1.7.1> copying src/biotite/structure/graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/info python3.14-biotite-1.7.1> copying src/biotite/structure/info/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info python3.14-biotite-1.7.1> copying src/biotite/structure/info/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info python3.14-biotite-1.7.1> copying src/biotite/structure/info/bonds.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info python3.14-biotite-1.7.1> copying src/biotite/structure/info/ccd.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info python3.14-biotite-1.7.1> copying src/biotite/structure/info/groups.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info python3.14-biotite-1.7.1> copying src/biotite/structure/info/masses.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info python3.14-biotite-1.7.1> copying src/biotite/structure/info/misc.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info python3.14-biotite-1.7.1> copying src/biotite/structure/info/radii.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info python3.14-biotite-1.7.1> copying src/biotite/structure/info/standardize.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io python3.14-biotite-1.7.1> copying src/biotite/structure/io/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io python3.14-biotite-1.7.1> copying src/biotite/structure/io/general.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io python3.14-biotite-1.7.1> copying src/biotite/structure/io/trajfile.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io python3.14-biotite-1.7.1> copying src/biotite/structure/io/util.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd python3.14-biotite-1.7.1> copying src/biotite/structure/io/dcd/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd python3.14-biotite-1.7.1> copying src/biotite/structure/io/dcd/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro python3.14-biotite-1.7.1> copying src/biotite/structure/io/gro/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro python3.14-biotite-1.7.1> copying src/biotite/structure/io/gro/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol python3.14-biotite-1.7.1> copying src/biotite/structure/io/mol/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol python3.14-biotite-1.7.1> copying src/biotite/structure/io/mol/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol python3.14-biotite-1.7.1> copying src/biotite/structure/io/mol/ctab.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol python3.14-biotite-1.7.1> copying src/biotite/structure/io/mol/header.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol python3.14-biotite-1.7.1> copying src/biotite/structure/io/mol/mol.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol python3.14-biotite-1.7.1> copying src/biotite/structure/io/mol/sdf.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf python3.14-biotite-1.7.1> copying src/biotite/structure/io/netcdf/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf python3.14-biotite-1.7.1> copying src/biotite/structure/io/netcdf/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdb/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdb/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbqt/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbqt/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbqt/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/bcif.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/cif.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/component.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/compress.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/encoding.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr python3.14-biotite-1.7.1> copying src/biotite/structure/io/trr/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr python3.14-biotite-1.7.1> copying src/biotite/structure/io/trr/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc python3.14-biotite-1.7.1> copying src/biotite/structure/io/xtc/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc python3.14-biotite-1.7.1> copying src/biotite/structure/io/xtc/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/autodock python3.14-biotite-1.7.1> copying src/biotite/application/autodock/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/autodock python3.14-biotite-1.7.1> copying src/biotite/application/autodock/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/autodock python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/blast python3.14-biotite-1.7.1> copying src/biotite/application/blast/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast python3.14-biotite-1.7.1> copying src/biotite/application/blast/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast python3.14-biotite-1.7.1> copying src/biotite/application/blast/webapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/clustalo python3.14-biotite-1.7.1> copying src/biotite/application/clustalo/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/clustalo python3.14-biotite-1.7.1> copying src/biotite/application/clustalo/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/clustalo python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/dssp python3.14-biotite-1.7.1> copying src/biotite/application/dssp/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/dssp python3.14-biotite-1.7.1> copying src/biotite/application/dssp/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/dssp python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/mafft python3.14-biotite-1.7.1> copying src/biotite/application/mafft/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/mafft python3.14-biotite-1.7.1> copying src/biotite/application/mafft/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/mafft python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/muscle python3.14-biotite-1.7.1> copying src/biotite/application/muscle/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle python3.14-biotite-1.7.1> copying src/biotite/application/muscle/app3.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle python3.14-biotite-1.7.1> copying src/biotite/application/muscle/app5.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/sra python3.14-biotite-1.7.1> copying src/biotite/application/sra/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/sra python3.14-biotite-1.7.1> copying src/biotite/application/sra/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/sra python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/tantan python3.14-biotite-1.7.1> copying src/biotite/application/tantan/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/tantan python3.14-biotite-1.7.1> copying src/biotite/application/tantan/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/tantan python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/viennarna python3.14-biotite-1.7.1> copying src/biotite/application/viennarna/rnaalifold.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna python3.14-biotite-1.7.1> copying src/biotite/application/viennarna/rnafold.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna python3.14-biotite-1.7.1> copying src/biotite/application/viennarna/rnaplot.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna python3.14-biotite-1.7.1> copying src/biotite/application/viennarna/util.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna python3.14-biotite-1.7.1> copying src/biotite/application/viennarna/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/database/afdb python3.14-biotite-1.7.1> copying src/biotite/database/afdb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/afdb python3.14-biotite-1.7.1> copying src/biotite/database/afdb/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/afdb python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/database/entrez python3.14-biotite-1.7.1> copying src/biotite/database/entrez/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez python3.14-biotite-1.7.1> copying src/biotite/database/entrez/check.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez python3.14-biotite-1.7.1> copying src/biotite/database/entrez/dbnames.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez python3.14-biotite-1.7.1> copying src/biotite/database/entrez/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez python3.14-biotite-1.7.1> copying src/biotite/database/entrez/key.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez python3.14-biotite-1.7.1> copying src/biotite/database/entrez/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/database/pubchem python3.14-biotite-1.7.1> copying src/biotite/database/pubchem/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem python3.14-biotite-1.7.1> copying src/biotite/database/pubchem/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem python3.14-biotite-1.7.1> copying src/biotite/database/pubchem/error.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem python3.14-biotite-1.7.1> copying src/biotite/database/pubchem/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem python3.14-biotite-1.7.1> copying src/biotite/database/pubchem/throttle.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/database/rcsb python3.14-biotite-1.7.1> copying src/biotite/database/rcsb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb python3.14-biotite-1.7.1> copying src/biotite/database/rcsb/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb python3.14-biotite-1.7.1> copying src/biotite/database/rcsb/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/database/uniprot python3.14-biotite-1.7.1> copying src/biotite/database/uniprot/check.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot python3.14-biotite-1.7.1> copying src/biotite/database/uniprot/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot python3.14-biotite-1.7.1> copying src/biotite/database/uniprot/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot python3.14-biotite-1.7.1> copying src/biotite/database/uniprot/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/interface/openmm python3.14-biotite-1.7.1> copying src/biotite/interface/openmm/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm python3.14-biotite-1.7.1> copying src/biotite/interface/openmm/state.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm python3.14-biotite-1.7.1> copying src/biotite/interface/openmm/system.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/interface/pymol python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/cgo.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/display.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/object.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/shapes.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/startup.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit python3.14-biotite-1.7.1> copying src/biotite/interface/rdkit/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit python3.14-biotite-1.7.1> copying src/biotite/interface/rdkit/mol.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/buckets.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/cigar.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/statistics.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/colorschemes.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/dendrogram.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/features.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/logo.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/plasmid.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io python3.14-biotite-1.7.1> copying src/biotite/sequence/io/general.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io python3.14-biotite-1.7.1> copying src/biotite/sequence/io/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank python3.14-biotite-1.7.1> copying src/biotite/sequence/io/genbank/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank python3.14-biotite-1.7.1> copying src/biotite/sequence/io/genbank/annotation.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank python3.14-biotite-1.7.1> copying src/biotite/sequence/io/genbank/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank python3.14-biotite-1.7.1> copying src/biotite/sequence/io/genbank/metadata.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank python3.14-biotite-1.7.1> copying src/biotite/sequence/io/genbank/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff python3.14-biotite-1.7.1> copying src/biotite/sequence/io/gff/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff python3.14-biotite-1.7.1> copying src/biotite/sequence/io/gff/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff python3.14-biotite-1.7.1> copying src/biotite/sequence/io/gff/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal python3.14-biotite-1.7.1> copying src/biotite/sequence/io/clustal/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal python3.14-biotite-1.7.1> copying src/biotite/sequence/io/clustal/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal python3.14-biotite-1.7.1> copying src/biotite/sequence/io/clustal/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta python3.14-biotite-1.7.1> copying src/biotite/sequence/io/fasta/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta python3.14-biotite-1.7.1> copying src/biotite/sequence/io/fasta/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta python3.14-biotite-1.7.1> copying src/biotite/sequence/io/fasta/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq python3.14-biotite-1.7.1> copying src/biotite/sequence/io/fastq/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq python3.14-biotite-1.7.1> copying src/biotite/sequence/io/fastq/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq python3.14-biotite-1.7.1> copying src/biotite/sequence/io/fastq/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq python3.14-biotite-1.7.1> running egg_info python3.14-biotite-1.7.1> writing src/biotite.egg-info/PKG-INFO python3.14-biotite-1.7.1> writing dependency_links to src/biotite.egg-info/dependency_links.txt python3.14-biotite-1.7.1> writing requirements to src/biotite.egg-info/requires.txt python3.14-biotite-1.7.1> writing top-level names to src/biotite.egg-info/top_level.txt python3.14-biotite-1.7.1> /nix/store/30xdi6i9iza30gldpqsfpqpkbb336ycg-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. python3.14-biotite-1.7.1> return get_active_overrides().subprocess_timeout python3.14-biotite-1.7.1> reading manifest file 'src/biotite.egg-info/SOURCES.txt' python3.14-biotite-1.7.1> reading manifest template 'MANIFEST.in' python3.14-biotite-1.7.1> warning: no files found matching 'src/biotite/structure/info/components.bcif' python3.14-biotite-1.7.1> adding license file 'LICENSE.rst' python3.14-biotite-1.7.1> writing manifest file 'src/biotite.egg-info/SOURCES.txt' python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/rust python3.14-biotite-1.7.1> copying src/rust/lib.rs -> build/lib.linux-x86_64-cpython-314/rust python3.14-biotite-1.7.1> copying src/rust/util.rs -> build/lib.linux-x86_64-cpython-314/rust python3.14-biotite-1.7.1> copying src/biotite/py.typed -> build/lib.linux-x86_64-cpython-314/biotite python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/rust/sequence python3.14-biotite-1.7.1> copying src/rust/sequence/codec.rs -> build/lib.linux-x86_64-cpython-314/rust/sequence python3.14-biotite-1.7.1> copying src/rust/sequence/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/sequence python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/rust/structure python3.14-biotite-1.7.1> copying src/rust/structure/bonds.rs -> build/lib.linux-x86_64-cpython-314/rust/structure python3.14-biotite-1.7.1> copying src/rust/structure/celllist.rs -> build/lib.linux-x86_64-cpython-314/rust/structure python3.14-biotite-1.7.1> copying src/rust/structure/charges.rs -> build/lib.linux-x86_64-cpython-314/rust/structure python3.14-biotite-1.7.1> copying src/rust/structure/connect.rs -> build/lib.linux-x86_64-cpython-314/rust/structure python3.14-biotite-1.7.1> copying src/rust/structure/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure python3.14-biotite-1.7.1> copying src/rust/structure/sasa.rs -> build/lib.linux-x86_64-cpython-314/rust/structure python3.14-biotite-1.7.1> copying src/rust/structure/util.rs -> build/lib.linux-x86_64-cpython-314/rust/structure python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/rust/structure/io python3.14-biotite-1.7.1> copying src/rust/structure/io/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb python3.14-biotite-1.7.1> copying src/rust/structure/io/pdb/file.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb python3.14-biotite-1.7.1> copying src/rust/structure/io/pdb/hybrid36.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb python3.14-biotite-1.7.1> copying src/rust/structure/io/pdb/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx python3.14-biotite-1.7.1> copying src/rust/structure/io/pdbx/encoding.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx python3.14-biotite-1.7.1> copying src/rust/structure/io/pdbx/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx python3.14-biotite-1.7.1> copying src/biotite/structure/atoms.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/bonds.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/celllist.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/spacegroups.json -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/structure/spacegroups.license -> build/lib.linux-x86_64-cpython-314/biotite/structure python3.14-biotite-1.7.1> copying src/biotite/sequence/codon_tables.txt -> build/lib.linux-x86_64-cpython-314/biotite/sequence python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/encoder_weights_3di.kerasify -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/pb.license -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet python3.14-biotite-1.7.1> copying src/biotite/structure/info/atom_masses.json -> build/lib.linux-x86_64-cpython-314/biotite/structure/info python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/nj.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/nj.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/nj.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/tree.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/tree.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/tree.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/upgma.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/upgma.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/upgma.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo python3.14-biotite-1.7.1> copying src/biotite/sequence/align/banded.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/banded.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/banded.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmeralphabet.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmeralphabet.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmeralphabet.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmersimilarity.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmersimilarity.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmersimilarity.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmertable.cpp -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmertable.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmertable.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/localgapped.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/localgapped.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/localgapped.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/localungapped.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/localungapped.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/localungapped.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/multiple.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/multiple.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/multiple.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/pairwise.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/pairwise.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/pairwise.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/permutation.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/permutation.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/permutation.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/primes.txt -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/selector.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/selector.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/selector.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/tracetable.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/tracetable.pxd -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> copying src/biotite/sequence/align/tracetable.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/3Di.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/GONNET.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/MATCH.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/NUC.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM10.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM100.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM110.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM120.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM130.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM140.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM150.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM160.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM170.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM180.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM190.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM20.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM200.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM210.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM220.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM230.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM240.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM250.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM260.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM270.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM280.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM290.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM30.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM300.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM310.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM320.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM330.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM340.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM350.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM360.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM370.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM380.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM390.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM40.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM400.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM410.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM420.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM430.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM440.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM450.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM460.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM470.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM480.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM490.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM50.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM500.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM60.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM70.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM80.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM90.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PB.license -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PB.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/3di_flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/autumn.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/blossom.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/ocean.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/spring.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/sunset.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/wither.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> running build_ext python3.14-biotite-1.7.1> building 'biotite.sequence.align.banded' extension python3.14-biotite-1.7.1> creating build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/banded.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/banded.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/banded.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.align.kmeralphabet' extension python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmeralphabet.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmeralphabet.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmeralphabet.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.align.kmersimilarity' extension python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmersimilarity.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmersimilarity.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmersimilarity.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.align.kmertable' extension python3.14-biotite-1.7.1> g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmertable.cpp -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmertable.o python3.14-biotite-1.7.1> g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmertable.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.align.localgapped' extension python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/localgapped.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localgapped.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localgapped.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.align.localungapped' extension python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/localungapped.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localungapped.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localungapped.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.align.multiple' extension python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/multiple.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/multiple.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/multiple.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.align.pairwise' extension python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/pairwise.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/pairwise.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/pairwise.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.align.permutation' extension python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/permutation.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/permutation.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/permutation.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.align.selector' extension python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/selector.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/selector.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/selector.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.align.tracetable' extension python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/tracetable.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/tracetable.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/tracetable.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.phylo.nj' extension python3.14-biotite-1.7.1> creating build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/nj.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/nj.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/nj.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.phylo.tree' extension python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/tree.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/tree.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/tree.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> building 'biotite.sequence.phylo.upgma' extension python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/upgma.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/upgma.o python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/upgma.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> running build_rust python3.14-biotite-1.7.1> cargo rustc --lib --message-format=json-render-diagnostics --manifest-path Cargo.toml --release -v --features pyo3/extension-module --crate-type cdylib --target x86_64-unknown-linux-gnu python3.14-biotite-1.7.1> warning: failed to save last-use data python3.14-biotite-1.7.1> This may prevent cargo from accurately tracking what is being used in its global cache. This information is used for automatically removing unused data in the cache. python3.14-biotite-1.7.1> python3.14-biotite-1.7.1> unable to open database file: /homeless-shelter/.cargo/.global-cache python3.14-biotite-1.7.1> python3.14-biotite-1.7.1> Caused by: python3.14-biotite-1.7.1> Error code 14: unable to open database file python3.14-biotite-1.7.1> Compiling target-lexicon v0.13.5 python3.14-biotite-1.7.1> Compiling autocfg v1.5.1 python3.14-biotite-1.7.1> Compiling proc-macro2 v1.0.107 python3.14-biotite-1.7.1> Compiling quote v1.0.47 python3.14-biotite-1.7.1> Compiling unicode-ident v1.0.26 python3.14-biotite-1.7.1> Compiling libc v0.2.190 python3.14-biotite-1.7.1> Compiling heck v0.5.0 python3.14-biotite-1.7.1> Compiling rawpointer v0.2.1 python3.14-biotite-1.7.1> Compiling indoc v2.0.7 python3.14-biotite-1.7.1> Compiling unindent v0.2.4 python3.14-biotite-1.7.1> Compiling once_cell v1.21.4 python3.14-biotite-1.7.1> Compiling rustc-hash v2.1.3 python3.14-biotite-1.7.1> Compiling either v1.18.0 python3.14-biotite-1.7.1> Compiling smallvec v1.16.2 python3.14-biotite-1.7.1> Running `rustc --crate-name autocfg --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/autocfg-1.5.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=a42ff67ea1ecf2ea -C extra-filename=-283989c93de178b9 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name build_script_build --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=unexpected_cfgs --check-cfg 'cfg(feature, values("rust_1_40", "cargo-clippy"))' -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arch_z80", "arch_zkasm", "default", "serde", "serde_support", "std"))' -C metadata=4db800290b3f50af -C extra-filename=-1923f9b508cf29c4 --out-dir /build/source/target/release/build/target-lexicon-1923f9b508cf29c4 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=b4a19042bc764ac7 -C extra-filename=-a1748a63e9060e7c --out-dir /build/source/target/release/build/proc-macro2-a1748a63e9060e7c -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name unicode_ident --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/unicode-ident-1.0.26/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=4b8652dd670bd1a6 -C extra-filename=-c74e3b88548992d2 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "proc-macro"))' -C metadata=e50c7694f3d21d8b -C extra-filename=-6ace72b374b83c14 --out-dir /build/source/target/release/build/quote-6ace72b374b83c14 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name heck --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/heck-0.5.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=4a8eb68e89253af7 -C extra-filename=-5aefe23acf6837b5 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.190/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --allow=unused_qualifications '--warn=clippy::unnecessary_semicolon' '--allow=clippy::unnecessary_cast' '--warn=clippy::ptr_as_ptr' '--allow=clippy::non_minimal_cfg' '--allow=clippy::missing_safety_doc' '--warn=clippy::map_unwrap_or' '--warn=clippy::manual_assert' '--allow=clippy::identity_op' '--warn=clippy::explicit_iter_loop' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=9294fd1e8596453a -C extra-filename=-69b4ca091671c4fa --out-dir /build/source/target/release/build/libc-69b4ca091671c4fa -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name rawpointer --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/rawpointer-0.2.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=0b5fdcbd0a0a82ae -C extra-filename=-321647f79fda5009 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes` python3.14-biotite-1.7.1> Running `rustc --crate-name indoc --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/indoc-2.0.7/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=9b21a8c3e90023e8 -C extra-filename=-2619e51e066ea75a --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name unindent --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/unindent-0.2.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=a8a9c0797fd4a61c -C extra-filename=-bb0db7ca4bb55f80 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes` python3.14-biotite-1.7.1> Running `rustc --crate-name once_cell --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/once_cell-1.21.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="alloc"' --cfg 'feature="default"' --cfg 'feature="race"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc", "atomic-polyfill", "critical-section", "default", "parking_lot", "portable-atomic", "race", "std", "unstable"))' -C metadata=e904420e246bdd05 -C extra-filename=-d2de14c4caf3215f --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes` python3.14-biotite-1.7.1> Running `rustc --crate-name rustc_hash --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/rustc-hash-2.1.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "rand", "std"))' -C metadata=ff3c32daa1e583cd -C extra-filename=-8009794313d47b81 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes` python3.14-biotite-1.7.1> Running `rustc --crate-name either --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/either-1.18.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="std"' --cfg 'feature="use_std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "serde", "std", "use_std"))' -C metadata=d5457cca23161e2d -C extra-filename=-1ba43553c129993f --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes` python3.14-biotite-1.7.1> Running `rustc --crate-name smallvec --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/smallvec-1.16.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arbitrary", "bincode", "const_generics", "const_new", "drain_filter", "drain_keep_rest", "impl_bincode", "malloc_size_of", "may_dangle", "serde", "specialization", "union", "unty", "write"))' -C metadata=1120a3c6cf649104 -C extra-filename=-ae0eb1e0faa58575 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes` python3.14-biotite-1.7.1> Compiling itertools v0.14.0 python3.14-biotite-1.7.1> Running `rustc --crate-name itertools --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/itertools-0.14.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="use_alloc"' --cfg 'feature="use_std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "use_alloc", "use_std"))' -C metadata=51ee26b97db92670 -C extra-filename=-42433dbef26eed58 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern either=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libeither-1ba43553c129993f.rmeta --cap-lints allow -Cforce-frame-pointers=yes` python3.14-biotite-1.7.1> Running `/build/source/target/release/build/quote-6ace72b374b83c14/build-script-build` python3.14-biotite-1.7.1> Compiling num-traits v0.2.19 python3.14-biotite-1.7.1> Compiling matrixmultiply v0.3.11 python3.14-biotite-1.7.1> Compiling memoffset v0.9.1 python3.14-biotite-1.7.1> Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="i128"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "libm", "std"))' -C metadata=8b0f568c5c8337ef -C extra-filename=-0381f4606dff5f8d --out-dir /build/source/target/release/build/num-traits-0381f4606dff5f8d -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-283989c93de178b9.rlib --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name build_script_build --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="cgemm"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("avx512", "cgemm", "constconf", "default", "num_cpus", "once_cell", "std", "thread-tree", "threading"))' -C metadata=d2085a0b7c357024 -C extra-filename=-a28e0125945846e2 --out-dir /build/source/target/release/build/matrixmultiply-a28e0125945846e2 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-283989c93de178b9.rlib --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name build_script_build --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "unstable_const", "unstable_offset_of"))' -C metadata=58b2679c10c09029 -C extra-filename=-39de7929a8b4be42 --out-dir /build/source/target/release/build/memoffset-39de7929a8b4be42 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-283989c93de178b9.rlib --cap-lints allow` python3.14-biotite-1.7.1> Running `/build/source/target/release/build/proc-macro2-a1748a63e9060e7c/build-script-build` python3.14-biotite-1.7.1> Running `/build/source/target/release/build/libc-69b4ca091671c4fa/build-script-build` python3.14-biotite-1.7.1> Running `rustc --crate-name libc --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.190/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --allow=unused_qualifications '--warn=clippy::unnecessary_semicolon' '--allow=clippy::unnecessary_cast' '--warn=clippy::ptr_as_ptr' '--allow=clippy::non_minimal_cfg' '--allow=clippy::missing_safety_doc' '--warn=clippy::map_unwrap_or' '--warn=clippy::manual_assert' '--allow=clippy::identity_op' '--warn=clippy::explicit_iter_loop' --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=b8c6aec14657f578 -C extra-filename=-6fd2d4b04c9b8ef8 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg linux_time_bits64 --check-cfg 'cfg(libc_deny_warnings)' --check-cfg 'cfg(emscripten_old_stat_abi)' --check-cfg 'cfg(espidf_picolibc)' --check-cfg 'cfg(espidf_time32)' --check-cfg 'cfg(freebsd10)' --check-cfg 'cfg(freebsd11)' --check-cfg 'cfg(freebsd12)' --check-cfg 'cfg(freebsd13)' --check-cfg 'cfg(freebsd14)' --check-cfg 'cfg(freebsd15)' --check-cfg 'cfg(libc_elfv2)' --check-cfg 'cfg(vxworks_lt_25_09)' --check-cfg 'cfg(libc_pauthtest)' --check-cfg 'cfg(gnu_file_offset_bits64)' --check-cfg 'cfg(gnu_time_bits64)' --check-cfg 'cfg(linux_time_bits64)' --check-cfg 'cfg(musl_v1_2)' --check-cfg 'cfg(musl32_time64)' --check-cfg 'cfg(musl_redir_time64)' --check-cfg 'cfg(uclibc32_time64)' --check-cfg 'cfg(target_os,values("switch","aix","ohos","hurd","rtems","visionos","nuttx","cygwin","qurt","qnx","helenos"))' --check-cfg 'cfg(target_env,values("illumos","wasi","aix","ohos","nto71_iosock"))' --check-cfg 'cfg(target_arch,values("loongarch64","mips32r6","mips64r6","csky"))'` python3.14-biotite-1.7.1> Running `/build/source/target/release/build/memoffset-39de7929a8b4be42/build-script-build` python3.14-biotite-1.7.1> Running `/build/source/target/release/build/num-traits-0381f4606dff5f8d/build-script-build` python3.14-biotite-1.7.1> Running `/build/source/target/release/build/matrixmultiply-a28e0125945846e2/build-script-build` python3.14-biotite-1.7.1> Running `rustc --crate-name proc_macro2 --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=0e32cf32e1c735d5 -C extra-filename=-82ae911c3ba39528 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern unicode_ident=/build/source/target/release/deps/libunicode_ident-c74e3b88548992d2.rmeta --cap-lints allow --cfg wrap_proc_macro --cfg proc_macro_span_location --cfg proc_macro_span_file --check-cfg 'cfg(fuzzing)' --check-cfg 'cfg(no_is_available)' --check-cfg 'cfg(no_literal_byte_character)' --check-cfg 'cfg(no_literal_c_string)' --check-cfg 'cfg(no_source_text)' --check-cfg 'cfg(proc_macro_span)' --check-cfg 'cfg(proc_macro_span_file)' --check-cfg 'cfg(proc_macro_span_location)' --check-cfg 'cfg(procmacro2_backtrace)' --check-cfg 'cfg(procmacro2_build_probe)' --check-cfg 'cfg(procmacro2_nightly_testing)' --check-cfg 'cfg(procmacro2_semver_exempt)' --check-cfg 'cfg(randomize_layout)' --check-cfg 'cfg(span_locations)' --check-cfg 'cfg(super_unstable)' --check-cfg 'cfg(wrap_proc_macro)'` python3.14-biotite-1.7.1> Running `/build/source/target/release/build/target-lexicon-1923f9b508cf29c4/build-script-build` python3.14-biotite-1.7.1> Running `rustc --crate-name target_lexicon --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=unexpected_cfgs --check-cfg 'cfg(feature, values("rust_1_40", "cargo-clippy"))' -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arch_z80", "arch_zkasm", "default", "serde", "serde_support", "std"))' -C metadata=e86912aead1355de -C extra-filename=-08a28daeac073f90 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow --cfg 'feature="rust_1_40"'` python3.14-biotite-1.7.1> Running `rustc --crate-name memoffset --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "unstable_const", "unstable_offset_of"))' -C metadata=3f444290d0519a55 -C extra-filename=-0c893d786b000fba --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg tuple_ty --cfg allow_clippy --cfg maybe_uninit --cfg doctests --cfg raw_ref_macros --cfg stable_const --cfg stable_offset_of` python3.14-biotite-1.7.1> Running `rustc --crate-name matrixmultiply --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="cgemm"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("avx512", "cgemm", "constconf", "default", "num_cpus", "once_cell", "std", "thread-tree", "threading"))' -C metadata=726dc4308008e1c6 -C extra-filename=-9358e6ac248b2823 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern rawpointer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librawpointer-321647f79fda5009.rmeta --cap-lints allow -Cforce-frame-pointers=yes --check-cfg 'cfg(has_avx512)'` python3.14-biotite-1.7.1> Running `rustc --crate-name num_traits --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="i128"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "libm", "std"))' -C metadata=8642df2c435d26ca -C extra-filename=-0895278af2705c68 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg has_total_cmp --check-cfg 'cfg(has_total_cmp)'` python3.14-biotite-1.7.1> Compiling pyo3-build-config v0.27.2 python3.14-biotite-1.7.1> Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="resolve-config"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib", "resolve-config"))' -C metadata=57a4121ac5839ff4 -C extra-filename=-44dfe99628b902d6 --out-dir /build/source/target/release/build/pyo3-build-config-44dfe99628b902d6 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern target_lexicon=/build/source/target/release/deps/libtarget_lexicon-08a28daeac073f90.rlib --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name quote --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "proc-macro"))' -C metadata=d1f4e6caaa2f2e1f -C extra-filename=-130c0e8ce9dec1ff --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-82ae911c3ba39528.rmeta --cap-lints allow --check-cfg 'cfg(no_diagnostic_namespace)'` python3.14-biotite-1.7.1> Compiling syn v2.0.119 python3.14-biotite-1.7.1> Running `rustc --crate-name syn --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/syn-2.0.119/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=7e78d6dbef47a99c -C extra-filename=-230d5172e6b75b2d --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-82ae911c3ba39528.rmeta --extern quote=/build/source/target/release/deps/libquote-130c0e8ce9dec1ff.rmeta --extern unicode_ident=/build/source/target/release/deps/libunicode_ident-c74e3b88548992d2.rmeta --cap-lints allow` python3.14-biotite-1.7.1> Running `/build/source/target/release/build/pyo3-build-config-44dfe99628b902d6/build-script-build` python3.14-biotite-1.7.1> Running `rustc --crate-name pyo3_build_config --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="resolve-config"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib", "resolve-config"))' -C metadata=79f8d6640738918c -C extra-filename=-1a86d8ca13f9c0d8 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern target_lexicon=/build/source/target/release/deps/libtarget_lexicon-08a28daeac073f90.rmeta --cap-lints allow` python3.14-biotite-1.7.1> Compiling num-complex v0.4.6 python3.14-biotite-1.7.1> Compiling num-integer v0.1.47 python3.14-biotite-1.7.1> Running `rustc --crate-name num_complex --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-complex-0.4.6/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("bytecheck", "bytemuck", "default", "libm", "rand", "rkyv", "serde", "std"))' -C metadata=7d4e81b15547a676 -C extra-filename=-e503fc626abc55fb --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rmeta --cap-lints allow -Cforce-frame-pointers=yes` python3.14-biotite-1.7.1> Running `rustc --crate-name num_integer --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-integer-0.1.47/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "std"))' -C metadata=da78310955af83ff -C extra-filename=-90b28fa43245104a --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rmeta --cap-lints allow -Cforce-frame-pointers=yes` python3.14-biotite-1.7.1> Compiling pyo3-ffi v0.27.2 python3.14-biotite-1.7.1> Compiling pyo3-macros-backend v0.27.2 python3.14-biotite-1.7.1> Compiling pyo3 v0.27.2 python3.14-biotite-1.7.1> Compiling numpy v0.27.1 python3.14-biotite-1.7.1> Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib"))' -C metadata=2cd0b3d22255d624 -C extra-filename=-87f7579efddd4333 --out-dir /build/source/target/release/build/pyo3-ffi-87f7579efddd4333 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rlib --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=b8b9079b505a116e -C extra-filename=-f6b6353518ce8715 --out-dir /build/source/target/release/build/pyo3-macros-backend-f6b6353518ce8715 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rlib --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="indoc"' --cfg 'feature="macros"' --cfg 'feature="pyo3-macros"' --cfg 'feature="unindent"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "anyhow", "arc_lock", "auto-initialize", "bigdecimal", "bytes", "chrono", "chrono-local", "chrono-tz", "default", "either", "experimental-async", "experimental-inspect", "extension-module", "eyre", "full", "generate-import-lib", "hashbrown", "indexmap", "indoc", "inventory", "jiff-02", "lock_api", "macros", "multiple-pymethods", "nightly", "num-bigint", "num-complex", "num-rational", "ordered-float", "parking_lot", "py-clone", "pyo3-macros", "rust_decimal", "serde", "smallvec", "time", "unindent", "uuid"))' -C metadata=de1c401902eda1ee -C extra-filename=-c07062a7e27d8381 --out-dir /build/source/target/release/build/pyo3-c07062a7e27d8381 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rlib --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no '--allow=clippy::needless-lifetimes' --deny=elided-lifetimes-in-paths -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("half", "nalgebra"))' -C metadata=f7f6da2f52f0dfbe -C extra-filename=-cc457513a32fffd2 --out-dir /build/source/target/release/build/numpy-cc457513a32fffd2 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rlib --cap-lints allow` python3.14-biotite-1.7.1> Compiling ndarray v0.17.2 python3.14-biotite-1.7.1> Running `rustc --crate-name ndarray --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/ndarray-0.17.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("approx", "blas", "default", "matrixmultiply-threading", "portable-atomic-critical-section", "rayon", "serde", "std"))' -C metadata=041257198ec0ca4e -C extra-filename=-717144b08148cdbf --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern matrixmultiply=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libmatrixmultiply-9358e6ac248b2823.rmeta --extern num_complex=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_complex-e503fc626abc55fb.rmeta --extern num_integer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_integer-90b28fa43245104a.rmeta --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rmeta --extern rawpointer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librawpointer-321647f79fda5009.rmeta --cap-lints allow -Cforce-frame-pointers=yes` python3.14-biotite-1.7.1> Running `/build/source/target/release/build/pyo3-macros-backend-f6b6353518ce8715/build-script-build` python3.14-biotite-1.7.1> Running `/build/source/target/release/build/numpy-cc457513a32fffd2/build-script-build` python3.14-biotite-1.7.1> Running `/build/source/target/release/build/pyo3-ffi-87f7579efddd4333/build-script-build` python3.14-biotite-1.7.1> Running `/build/source/target/release/build/pyo3-c07062a7e27d8381/build-script-build` python3.14-biotite-1.7.1> Running `rustc --crate-name pyo3_ffi --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --cfg 'feature="default"' --cfg 'feature="extension-module"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib"))' -C metadata=7b310d33fd1cf842 -C extra-filename=-7c7607a619550a32 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-6fd2d4b04c9b8ef8.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'` python3.14-biotite-1.7.1> Running `rustc --crate-name pyo3_macros_backend --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=3ea599f34ba539ac -C extra-filename=-685453fc0f80c0e6 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern heck=/build/source/target/release/deps/libheck-5aefe23acf6837b5.rmeta --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-82ae911c3ba39528.rmeta --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rmeta --extern quote=/build/source/target/release/deps/libquote-130c0e8ce9dec1ff.rmeta --extern syn=/build/source/target/release/deps/libsyn-230d5172e6b75b2d.rmeta --cap-lints allow --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'` python3.14-biotite-1.7.1> Compiling pyo3-macros v0.27.2 python3.14-biotite-1.7.1> Running `rustc --crate-name pyo3_macros --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect", "multiple-pymethods"))' -C metadata=cd727d21317ff0a0 -C extra-filename=-cbf9c618afddff41 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-82ae911c3ba39528.rlib --extern pyo3_macros_backend=/build/source/target/release/deps/libpyo3_macros_backend-685453fc0f80c0e6.rlib --extern quote=/build/source/target/release/deps/libquote-130c0e8ce9dec1ff.rlib --extern syn=/build/source/target/release/deps/libsyn-230d5172e6b75b2d.rlib --extern proc_macro --cap-lints allow` python3.14-biotite-1.7.1> Running `rustc --crate-name pyo3 --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="indoc"' --cfg 'feature="macros"' --cfg 'feature="pyo3-macros"' --cfg 'feature="unindent"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "anyhow", "arc_lock", "auto-initialize", "bigdecimal", "bytes", "chrono", "chrono-local", "chrono-tz", "default", "either", "experimental-async", "experimental-inspect", "extension-module", "eyre", "full", "generate-import-lib", "hashbrown", "indexmap", "indoc", "inventory", "jiff-02", "lock_api", "macros", "multiple-pymethods", "nightly", "num-bigint", "num-complex", "num-rational", "ordered-float", "parking_lot", "py-clone", "pyo3-macros", "rust_decimal", "serde", "smallvec", "time", "unindent", "uuid"))' -C metadata=0cda7c487c6fcd58 -C extra-filename=-c40ad565329a14e6 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern indoc=/build/source/target/release/deps/libindoc-2619e51e066ea75a.so --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-6fd2d4b04c9b8ef8.rmeta --extern memoffset=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libmemoffset-0c893d786b000fba.rmeta --extern once_cell=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libonce_cell-d2de14c4caf3215f.rmeta --extern pyo3_ffi=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3_ffi-7c7607a619550a32.rmeta --extern pyo3_macros=/build/source/target/release/deps/libpyo3_macros-cbf9c618afddff41.so --extern unindent=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libunindent-bb0db7ca4bb55f80.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'` python3.14-biotite-1.7.1> Running `rustc --crate-name numpy --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no '--allow=clippy::needless-lifetimes' --deny=elided-lifetimes-in-paths --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("half", "nalgebra"))' -C metadata=93497aefa4c6baf7 -C extra-filename=-6a7699dad1195919 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-6fd2d4b04c9b8ef8.rmeta --extern ndarray=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libndarray-717144b08148cdbf.rmeta --extern num_complex=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_complex-e503fc626abc55fb.rmeta --extern num_integer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_integer-90b28fa43245104a.rmeta --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rmeta --extern pyo3=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3-c40ad565329a14e6.rmeta --extern rustc_hash=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librustc_hash-8009794313d47b81.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)'` python3.14-biotite-1.7.1> Compiling biotite_rust v0.0.0 (/build/source) python3.14-biotite-1.7.1> Running `rustc --crate-name rust --edition=2018 src/rust/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type cdylib --emit=dep-info,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=169b530a7373ffed --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern itertools=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libitertools-42433dbef26eed58.rlib --extern ndarray=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libndarray-717144b08148cdbf.rlib --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rlib --extern numpy=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnumpy-6a7699dad1195919.rlib --extern pyo3=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3-c40ad565329a14e6.rlib --extern smallvec=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libsmallvec-ae0eb1e0faa58575.rlib -Cforce-frame-pointers=yes` python3.14-biotite-1.7.1> Finished `release` profile [optimized] target(s) in 14.69s python3.14-biotite-1.7.1> Copying rust artifact from target/x86_64-unknown-linux-gnu/release/librust.so to build/lib.linux-x86_64-cpython-314/biotite/rust.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> installing to build/bdist.linux-x86_64/wheel python3.14-biotite-1.7.1> running install python3.14-biotite-1.7.1> running install_lib python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/copyable.py -> build/bdist.linux-x86_64/wheel/./biotite python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/file.py -> build/bdist.linux-x86_64/wheel/./biotite python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/setup_ccd.py -> build/bdist.linux-x86_64/wheel/./biotite python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/typing.py -> build/bdist.linux-x86_64/wheel/./biotite python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/visualize.py -> build/bdist.linux-x86_64/wheel/./biotite python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/version.py -> build/bdist.linux-x86_64/wheel/./biotite python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/superimpose.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/basepairs.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/bonds.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/box.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/celllist.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/chains.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/charges.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/compare.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/connect.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/density.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/dotbracket.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/error.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/filter.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/geometry.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/hbond.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/integrity.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/mechanics.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/molecules.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/pseudoknots.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/rdf.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/repair.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/residues.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/rings.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/sasa.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/segments.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/sse.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/tm.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/transform.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/util.py -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/alphabet python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/encoder.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/i3d.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/layers.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/pb.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/unkerasify.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/encoder_weights_3di.kerasify -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/pb.license -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/graphics python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/rna.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/info python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/bonds.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/ccd.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/groups.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/masses.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/misc.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/radii.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/standardize.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/atom_masses.json -> build/bdist.linux-x86_64/wheel/./biotite/structure/info python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/general.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trajfile.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/util.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/dcd python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/dcd python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/dcd python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/gro python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/gro python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/gro python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/mol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/ctab.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/header.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/mol.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/sdf.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/netcdf python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/netcdf python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/netcdf python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdb python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdbqt python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/bcif.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/cif.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/component.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/compress.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/encoding.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/trr python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/trr python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/trr python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/xtc python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/xtc python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/xtc python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/atoms.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/bonds.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/celllist.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/spacegroups.json -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/spacegroups.license -> build/bdist.linux-x86_64/wheel/./biotite/structure python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/application.py -> build/bdist.linux-x86_64/wheel/./biotite/application python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/localapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/msaapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/util.py -> build/bdist.linux-x86_64/wheel/./biotite/application python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/webapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/autodock python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/autodock/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/autodock python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/autodock/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/autodock python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/blast python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/webapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/clustalo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/clustalo/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/clustalo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/clustalo/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/clustalo python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/dssp python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/dssp/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/dssp python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/dssp/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/dssp python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/mafft python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/mafft/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/mafft python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/mafft/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/mafft python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/muscle python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/app3.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/app5.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/sra python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/sra/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/sra python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/sra/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/sra python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/tantan python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/tantan/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/tantan python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/tantan/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/tantan python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/viennarna python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnaalifold.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnafold.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnaplot.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/util.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/database python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/error.py -> build/bdist.linux-x86_64/wheel/./biotite/database python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/database/afdb python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/afdb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/afdb python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/afdb/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/afdb python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/database/entrez python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/check.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/dbnames.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/key.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/database/pubchem python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/error.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/throttle.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/database/rcsb python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/database/uniprot python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/check.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/interface python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/version.py -> build/bdist.linux-x86_64/wheel/./biotite/interface python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/warning.py -> build/bdist.linux-x86_64/wheel/./biotite/interface python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/interface/openmm python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/state.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/system.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/interface/pymol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/cgo.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/display.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/object.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/shapes.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/startup.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/interface/rdkit python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/rdkit python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit/mol.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/rdkit python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/alphabet.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/annotation.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/codon.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/profile.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/search.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/seqtypes.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/buckets.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/cigar.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/statistics.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpp -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/primes.txt -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.pxd -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/3Di.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/GONNET.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/MATCH.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/NUC.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM10.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM100.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM110.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM120.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM130.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM140.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM150.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM160.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM170.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM180.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM190.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM20.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM200.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM210.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM220.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM230.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM240.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM250.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM260.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM270.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM280.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM290.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM30.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM300.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM310.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM320.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM330.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM340.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM350.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM360.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM370.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM380.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM390.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM40.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM400.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM410.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM420.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM430.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM440.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM450.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM460.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM470.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM480.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM490.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM50.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM500.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM60.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM70.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM80.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM90.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PB.license -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PB.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/graphics python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/colorschemes.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/dendrogram.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/features.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/logo.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/plasmid.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/3di_flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/autumn.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/blossom.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/ocean.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/spring.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/sunset.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/wither.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/io python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/general.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/genbank python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/annotation.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/metadata.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/gff python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/clustal python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/fasta python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/fastq python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/codon_tables.txt -> build/bdist.linux-x86_64/wheel/./biotite/sequence python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/py.typed -> build/bdist.linux-x86_64/wheel/./biotite python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/rust.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/rust python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/lib.rs -> build/bdist.linux-x86_64/wheel/./rust python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/util.rs -> build/bdist.linux-x86_64/wheel/./rust python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/rust/sequence python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/sequence/codec.rs -> build/bdist.linux-x86_64/wheel/./rust/sequence python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/sequence/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/sequence python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/rust/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/bonds.rs -> build/bdist.linux-x86_64/wheel/./rust/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/celllist.rs -> build/bdist.linux-x86_64/wheel/./rust/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/charges.rs -> build/bdist.linux-x86_64/wheel/./rust/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/connect.rs -> build/bdist.linux-x86_64/wheel/./rust/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/sasa.rs -> build/bdist.linux-x86_64/wheel/./rust/structure python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/util.rs -> build/bdist.linux-x86_64/wheel/./rust/structure python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/rust/structure/io python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/io/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/rust/structure/io/pdb python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/file.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/hybrid36.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/rust/structure/io/pdbx python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx/encoding.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdbx python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdbx python3.14-biotite-1.7.1> running install_egg_info python3.14-biotite-1.7.1> Copying src/biotite.egg-info to build/bdist.linux-x86_64/wheel/./biotite-1.7.1-py3.14.egg-info python3.14-biotite-1.7.1> running install_scripts python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite-1.7.1.dist-info/WHEEL python3.14-biotite-1.7.1> creating '/build/source/dist/.tmp-r8vr8el9/biotite-1.7.1-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it python3.14-biotite-1.7.1> adding 'biotite/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/copyable.py' python3.14-biotite-1.7.1> adding 'biotite/file.py' python3.14-biotite-1.7.1> adding 'biotite/py.typed' python3.14-biotite-1.7.1> adding 'biotite/rust.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/setup_ccd.py' python3.14-biotite-1.7.1> adding 'biotite/typing.py' python3.14-biotite-1.7.1> adding 'biotite/version.py' python3.14-biotite-1.7.1> adding 'biotite/visualize.py' python3.14-biotite-1.7.1> adding 'biotite/application/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/application/application.py' python3.14-biotite-1.7.1> adding 'biotite/application/localapp.py' python3.14-biotite-1.7.1> adding 'biotite/application/msaapp.py' python3.14-biotite-1.7.1> adding 'biotite/application/util.py' python3.14-biotite-1.7.1> adding 'biotite/application/webapp.py' python3.14-biotite-1.7.1> adding 'biotite/application/autodock/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/application/autodock/app.py' python3.14-biotite-1.7.1> adding 'biotite/application/blast/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/application/blast/alignment.py' python3.14-biotite-1.7.1> adding 'biotite/application/blast/webapp.py' python3.14-biotite-1.7.1> adding 'biotite/application/clustalo/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/application/clustalo/app.py' python3.14-biotite-1.7.1> adding 'biotite/application/dssp/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/application/dssp/app.py' python3.14-biotite-1.7.1> adding 'biotite/application/mafft/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/application/mafft/app.py' python3.14-biotite-1.7.1> adding 'biotite/application/muscle/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/application/muscle/app3.py' python3.14-biotite-1.7.1> adding 'biotite/application/muscle/app5.py' python3.14-biotite-1.7.1> adding 'biotite/application/sra/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/application/sra/app.py' python3.14-biotite-1.7.1> adding 'biotite/application/tantan/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/application/tantan/app.py' python3.14-biotite-1.7.1> adding 'biotite/application/viennarna/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/application/viennarna/rnaalifold.py' python3.14-biotite-1.7.1> adding 'biotite/application/viennarna/rnafold.py' python3.14-biotite-1.7.1> adding 'biotite/application/viennarna/rnaplot.py' python3.14-biotite-1.7.1> adding 'biotite/application/viennarna/util.py' python3.14-biotite-1.7.1> adding 'biotite/database/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/database/error.py' python3.14-biotite-1.7.1> adding 'biotite/database/afdb/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/database/afdb/download.py' python3.14-biotite-1.7.1> adding 'biotite/database/entrez/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/database/entrez/check.py' python3.14-biotite-1.7.1> adding 'biotite/database/entrez/dbnames.py' python3.14-biotite-1.7.1> adding 'biotite/database/entrez/download.py' python3.14-biotite-1.7.1> adding 'biotite/database/entrez/key.py' python3.14-biotite-1.7.1> adding 'biotite/database/entrez/query.py' python3.14-biotite-1.7.1> adding 'biotite/database/pubchem/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/database/pubchem/download.py' python3.14-biotite-1.7.1> adding 'biotite/database/pubchem/error.py' python3.14-biotite-1.7.1> adding 'biotite/database/pubchem/query.py' python3.14-biotite-1.7.1> adding 'biotite/database/pubchem/throttle.py' python3.14-biotite-1.7.1> adding 'biotite/database/rcsb/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/database/rcsb/download.py' python3.14-biotite-1.7.1> adding 'biotite/database/rcsb/query.py' python3.14-biotite-1.7.1> adding 'biotite/database/uniprot/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/database/uniprot/check.py' python3.14-biotite-1.7.1> adding 'biotite/database/uniprot/download.py' python3.14-biotite-1.7.1> adding 'biotite/database/uniprot/query.py' python3.14-biotite-1.7.1> adding 'biotite/interface/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/interface/version.py' python3.14-biotite-1.7.1> adding 'biotite/interface/warning.py' python3.14-biotite-1.7.1> adding 'biotite/interface/openmm/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/interface/openmm/state.py' python3.14-biotite-1.7.1> adding 'biotite/interface/openmm/system.py' python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/cgo.py' python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/convert.py' python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/display.py' python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/object.py' python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/shapes.py' python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/startup.py' python3.14-biotite-1.7.1> adding 'biotite/interface/rdkit/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/interface/rdkit/mol.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/alphabet.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/annotation.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/codon.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/codon_tables.txt' python3.14-biotite-1.7.1> adding 'biotite/sequence/profile.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/search.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/seqtypes.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/sequence.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/alignment.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/banded.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/banded.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/banded.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/buckets.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/cigar.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmeralphabet.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmeralphabet.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmeralphabet.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmersimilarity.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmersimilarity.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmersimilarity.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmertable.cpp' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmertable.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmertable.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localgapped.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localgapped.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localgapped.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localungapped.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localungapped.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localungapped.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/multiple.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/multiple.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/multiple.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/pairwise.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/pairwise.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/pairwise.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/permutation.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/permutation.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/permutation.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/primes.txt' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/selector.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/selector.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/selector.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/statistics.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/tracetable.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/tracetable.pxd' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/tracetable.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/3Di.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM100.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM30.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM35.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM40.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM45.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM50.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM50_13p.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM55.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM60.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM62.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM62_13p.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM65.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM70.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM75.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM80.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM85.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM90.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUMN.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/DAYHOFF.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/GONNET.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/IDENTITY.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/MATCH.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/NUC.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM10.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM100.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM110.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM120.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM130.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM140.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM150.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM160.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM170.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM180.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM190.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM20.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM200.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM210.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM220.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM230.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM240.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM250.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM260.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM270.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM280.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM290.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM30.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM300.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM310.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM320.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM330.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM340.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM350.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM360.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM370.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM380.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM390.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM40.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM400.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM410.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM420.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM430.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM440.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM450.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM460.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM470.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM480.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM490.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM50.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM500.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM60.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM70.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM80.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM90.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PB.license' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PB.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/alignment.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/colorschemes.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/dendrogram.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/features.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/logo.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/plasmid.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/3di_flower.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/autumn.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/blossom.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/clustalx_dna.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/clustalx_protein.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/flower.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_buried.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_prop_helix.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_prop_strand.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_prop_turn.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_taylor.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_zappo.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/ocean.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/pb_flower.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/rainbow_dna.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/rainbow_protein.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/spring.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/sunset.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/wither.json' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/general.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/clustal/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/clustal/convert.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/clustal/file.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/fasta/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/fasta/convert.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/fasta/file.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/fastq/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/fastq/convert.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/fastq/file.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/genbank/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/genbank/annotation.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/genbank/file.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/genbank/metadata.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/genbank/sequence.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/gff/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/gff/convert.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/io/gff/file.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/nj.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/nj.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/nj.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/tree.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/tree.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/tree.pyx' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/upgma.c' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/upgma.pyi' python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/upgma.pyx' python3.14-biotite-1.7.1> adding 'biotite/structure/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/atoms.py' python3.14-biotite-1.7.1> adding 'biotite/structure/atoms.pyi' python3.14-biotite-1.7.1> adding 'biotite/structure/basepairs.py' python3.14-biotite-1.7.1> adding 'biotite/structure/bonds.py' python3.14-biotite-1.7.1> adding 'biotite/structure/bonds.pyi' python3.14-biotite-1.7.1> adding 'biotite/structure/box.py' python3.14-biotite-1.7.1> adding 'biotite/structure/celllist.py' python3.14-biotite-1.7.1> adding 'biotite/structure/celllist.pyi' python3.14-biotite-1.7.1> adding 'biotite/structure/chains.py' python3.14-biotite-1.7.1> adding 'biotite/structure/charges.py' python3.14-biotite-1.7.1> adding 'biotite/structure/compare.py' python3.14-biotite-1.7.1> adding 'biotite/structure/connect.py' python3.14-biotite-1.7.1> adding 'biotite/structure/density.py' python3.14-biotite-1.7.1> adding 'biotite/structure/dotbracket.py' python3.14-biotite-1.7.1> adding 'biotite/structure/error.py' python3.14-biotite-1.7.1> adding 'biotite/structure/filter.py' python3.14-biotite-1.7.1> adding 'biotite/structure/geometry.py' python3.14-biotite-1.7.1> adding 'biotite/structure/hbond.py' python3.14-biotite-1.7.1> adding 'biotite/structure/integrity.py' python3.14-biotite-1.7.1> adding 'biotite/structure/mechanics.py' python3.14-biotite-1.7.1> adding 'biotite/structure/molecules.py' python3.14-biotite-1.7.1> adding 'biotite/structure/pseudoknots.py' python3.14-biotite-1.7.1> adding 'biotite/structure/rdf.py' python3.14-biotite-1.7.1> adding 'biotite/structure/repair.py' python3.14-biotite-1.7.1> adding 'biotite/structure/residues.py' python3.14-biotite-1.7.1> adding 'biotite/structure/rings.py' python3.14-biotite-1.7.1> adding 'biotite/structure/sasa.py' python3.14-biotite-1.7.1> adding 'biotite/structure/segments.py' python3.14-biotite-1.7.1> adding 'biotite/structure/sequence.py' python3.14-biotite-1.7.1> adding 'biotite/structure/spacegroups.json' python3.14-biotite-1.7.1> adding 'biotite/structure/spacegroups.license' python3.14-biotite-1.7.1> adding 'biotite/structure/sse.py' python3.14-biotite-1.7.1> adding 'biotite/structure/superimpose.py' python3.14-biotite-1.7.1> adding 'biotite/structure/tm.py' python3.14-biotite-1.7.1> adding 'biotite/structure/transform.py' python3.14-biotite-1.7.1> adding 'biotite/structure/util.py' python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/encoder.py' python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/encoder_weights_3di.kerasify' python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/i3d.py' python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/layers.py' python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/pb.license' python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/pb.py' python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/unkerasify.py' python3.14-biotite-1.7.1> adding 'biotite/structure/graphics/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/graphics/atoms.py' python3.14-biotite-1.7.1> adding 'biotite/structure/graphics/rna.py' python3.14-biotite-1.7.1> adding 'biotite/structure/info/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/info/atom_masses.json' python3.14-biotite-1.7.1> adding 'biotite/structure/info/atoms.py' python3.14-biotite-1.7.1> adding 'biotite/structure/info/bonds.py' python3.14-biotite-1.7.1> adding 'biotite/structure/info/ccd.py' python3.14-biotite-1.7.1> adding 'biotite/structure/info/groups.py' python3.14-biotite-1.7.1> adding 'biotite/structure/info/masses.py' python3.14-biotite-1.7.1> adding 'biotite/structure/info/misc.py' python3.14-biotite-1.7.1> adding 'biotite/structure/info/radii.py' python3.14-biotite-1.7.1> adding 'biotite/structure/info/standardize.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/general.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/trajfile.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/util.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/dcd/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/dcd/file.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/gro/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/gro/file.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/mol/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/mol/convert.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/mol/ctab.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/mol/header.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/mol/mol.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/mol/sdf.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/netcdf/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/netcdf/file.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdb/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdb/convert.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdb/file.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbqt/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbqt/convert.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbqt/file.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/bcif.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/cif.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/component.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/compress.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/convert.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/encoding.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/trr/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/trr/file.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/xtc/__init__.py' python3.14-biotite-1.7.1> adding 'biotite/structure/io/xtc/file.py' python3.14-biotite-1.7.1> adding 'biotite-1.7.1.dist-info/licenses/LICENSE.rst' python3.14-biotite-1.7.1> adding 'rust/lib.rs' python3.14-biotite-1.7.1> adding 'rust/util.rs' python3.14-biotite-1.7.1> adding 'rust/sequence/codec.rs' python3.14-biotite-1.7.1> adding 'rust/sequence/mod.rs' python3.14-biotite-1.7.1> adding 'rust/structure/bonds.rs' python3.14-biotite-1.7.1> adding 'rust/structure/celllist.rs' python3.14-biotite-1.7.1> adding 'rust/structure/charges.rs' python3.14-biotite-1.7.1> adding 'rust/structure/connect.rs' python3.14-biotite-1.7.1> adding 'rust/structure/mod.rs' python3.14-biotite-1.7.1> adding 'rust/structure/sasa.rs' python3.14-biotite-1.7.1> adding 'rust/structure/util.rs' python3.14-biotite-1.7.1> adding 'rust/structure/io/mod.rs' python3.14-biotite-1.7.1> adding 'rust/structure/io/pdb/file.rs' python3.14-biotite-1.7.1> adding 'rust/structure/io/pdb/hybrid36.rs' python3.14-biotite-1.7.1> adding 'rust/structure/io/pdb/mod.rs' python3.14-biotite-1.7.1> adding 'rust/structure/io/pdbx/encoding.rs' python3.14-biotite-1.7.1> adding 'rust/structure/io/pdbx/mod.rs' python3.14-biotite-1.7.1> adding 'biotite-1.7.1.dist-info/METADATA' python3.14-biotite-1.7.1> adding 'biotite-1.7.1.dist-info/WHEEL' python3.14-biotite-1.7.1> adding 'biotite-1.7.1.dist-info/top_level.txt' python3.14-biotite-1.7.1> adding 'biotite-1.7.1.dist-info/RECORD' python3.14-biotite-1.7.1> removing build/bdist.linux-x86_64/wheel python3.14-biotite-1.7.1> Successfully built biotite-1.7.1-cp314-cp314-linux_x86_64.whl python3.14-biotite-1.7.1> Finished creating a wheel... python3.14-biotite-1.7.1> Finished executing pypaBuildPhase python3.14-biotite-1.7.1> buildPhase completed in 3 minutes 20 seconds python3.14-biotite-1.7.1> Running phase: pythonRuntimeDepsCheckHook python3.14-biotite-1.7.1> Executing pythonRuntimeDepsCheck python3.14-biotite-1.7.1> Checking runtime dependencies for biotite-1.7.1-cp314-cp314-linux_x86_64.whl python3.14-biotite-1.7.1> Finished executing pythonRuntimeDepsCheck python3.14-biotite-1.7.1> Running phase: installPhase python3.14-biotite-1.7.1> Executing pypaInstallPhase python3.14-biotite-1.7.1> Successfully installed biotite-1.7.1-cp314-cp314-linux_x86_64.whl python3.14-biotite-1.7.1> Finished executing pypaInstallPhase python3.14-biotite-1.7.1> Running phase: pythonOutputDistPhase python3.14-biotite-1.7.1> Executing pythonOutputDistPhase python3.14-biotite-1.7.1> Finished executing pythonOutputDistPhase python3.14-biotite-1.7.1> Running phase: fixupPhase python3.14-biotite-1.7.1> shrinking RPATHs of ELF executables and libraries in /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1 python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/rust.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so python3.14-biotite-1.7.1> checking for references to /build/ in /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1... python3.14-biotite-1.7.1> patching script interpreter paths in /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1 python3.14-biotite-1.7.1> stripping (with command strip and flags -S -p) in /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib python3.14-biotite-1.7.1> shrinking RPATHs of ELF executables and libraries in /nix/store/xcgx29vr8wvkh33qxwd0sj1xmxch01j5-python3.14-biotite-1.7.1-dist python3.14-biotite-1.7.1> checking for references to /build/ in /nix/store/xcgx29vr8wvkh33qxwd0sj1xmxch01j5-python3.14-biotite-1.7.1-dist... python3.14-biotite-1.7.1> patching script interpreter paths in /nix/store/xcgx29vr8wvkh33qxwd0sj1xmxch01j5-python3.14-biotite-1.7.1-dist python3.14-biotite-1.7.1> Executing pythonRemoveTestsDir python3.14-biotite-1.7.1> Finished executing pythonRemoveTestsDir python3.14-biotite-1.7.1> Running phase: pythonCatchConflictsPhase python3.14-biotite-1.7.1> Running phase: pythonRemoveBinBytecodePhase python3.14-biotite-1.7.1> Running phase: pythonImportsCheckPhase python3.14-biotite-1.7.1> Executing pythonImportsCheckPhase python3.14-biotite-1.7.1> Check whether the following modules can be imported: biotite biotite.sequence biotite.structure python3.14-biotite-1.7.1> Running phase: pythonMetadataCheckPhase python3.14-biotite-1.7.1> Executing pythonMetadataCheckPhase post-build step Route build to niks3: ok Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org time=2026-10-03T21:18:16.184+09:00 level=INFO msg="Uploading 4 paths to niks3.sjanglab.org (45 already cached)" time=2026-10-03T21:18:16.184+09:00 level=INFO msg="Uploading wpyhlx5rf4disg18myb8sncxdl9hg456-python3.14-msgpack-1.2.1 (363.3KB)" time=2026-10-03T21:18:16.184+09:00 level=INFO msg="Uploading icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1 (43.4MB)" time=2026-10-03T21:18:16.184+09:00 level=INFO msg="Uploading 458grrzxnbip9fgpa4dks7isnbwz8vs5-python3.14-biotraj-1.2.2 (4.5MB)" time=2026-10-03T21:18:16.184+09:00 level=INFO msg="Uploading n5vlrwmyd1s1s5pv61s7krr6zva9isjv-python3.14-scipy-1.18.1 (128.6MB)" time=2026-10-03T21:18:18.248+09:00 level=INFO msg="Uploading 4 narinfos" time=2026-10-03T21:18:18.655+09:00 level=INFO msg="Upload complete. (2.827s)"