foldseek-10-941cd33
checks.x86_64-linux.pkgs-foldseek
· build #95
· raw
1Using checkPhaseThreadLimitHook
unpackPhase
2unpacking source archive /nix/store/1g2298s2bz7py868im4h43k0v913xzgd-source3source root is sourcepatchPhase
4patching script interpreter paths in lib/mmseqs/cmake/xxdi.pl5lib/mmseqs/cmake/xxdi.pl: interpreter directive changed from "#!/usr/bin/env perl" to "/nix/store/8g4dmf7l8q1mf9w4wfmlcl8gvdgmhb8v-perl-5.42.3/bin/perl"6patching script interpreter paths in cmake/xxdi.pl7find: 'cmake/xxdi.pl': No such file or directoryconfigurePhase
8cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/share/doc/foldseek -DCMAKE_INSTALL_INFODIR=/nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/share/man -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/include -DCMAKE_INSTALL_SBINDIR=/nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/lib -DCMAKE_STRIP=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/strip -DCMAKE_RANLIB=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/ranlib -DCMAKE_AR=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/ar -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_INSTALL_PREFIX=/nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 -DHAVE_AVX2=19-- The C compiler identification is GNU 16.2.010-- The CXX compiler identification is GNU 16.2.011-- Detecting C compiler ABI info12-- Detecting C compiler ABI info - done13-- Check for working C compiler: /nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/gcc - skipped14-- Detecting C compile features15-- Detecting C compile features - done16-- Detecting CXX compiler ABI info17-- Detecting CXX compiler ABI info - done18-- Check for working CXX compiler: /nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/g++ - skipped19-- Detecting CXX compile features20-- Detecting CXX compile features - done21CMake Warning (deprecated) at lib/mmseqs/CMakeLists.txt:1 (cmake_minimum_required):22 Compatibility with CMake < 3.10 will be removed from a future version of23 CMake.2425 Update the VERSION argument <min> value. Or, use the <min>...<max> syntax26 to tell CMake that the project requires at least <min> but has been updated27 to work with policies introduced by <max> or earlier.28This warning is for project developers. Use -Wno-author or -Wno-deprecated29to suppress it.3031-- Source Directory: /build/source/lib/mmseqs32-- Project Directory: /build/source/lib/mmseqs33-- Compiler is GNU 34-- ZSTD VERSION 1.3.835CMake Warning (deprecated) at lib/mmseqs/lib/tinyexpr/CMakeLists.txt:1 (cmake_minimum_required):36 Compatibility with CMake < 3.10 will be removed from a future version of37 CMake.3839 Update the VERSION argument <min> value. Or, use the <min>...<max> syntax40 to tell CMake that the project requires at least <min> but has been updated41 to work with policies introduced by <max> or earlier.42This warning is for project developers. Use -Wno-author or -Wno-deprecated43to suppress it.4445-- xxd not found, using xxdi.pl instead46-- ShellCheck disabled47-- Performing Test HAVE_POSIX_FADVISE48-- Performing Test HAVE_POSIX_FADVISE - Success49-- Performing Test HAVE_POSIX_MADVISE50-- Performing Test HAVE_POSIX_MADVISE - Success51-- Performing Test ATOMIC_NATIVE52-- Performing Test ATOMIC_NATIVE - Success53-- IPS4O sorting works54-- Found ZLIB55-- Performing Test HAVE_ZLIB_CHECK56-- Performing Test HAVE_ZLIB_CHECK - Success57-- ZLIB works58-- Found BZLIB59-- Performing Test HAVE_BZLIB_CHECK60-- Performing Test HAVE_BZLIB_CHECK - Success61-- BZLIB works62-- Found OpenMP63CMake Warning (deprecated) at lib/foldcomp/CMakeLists.txt:2 (cmake_minimum_required):64 Compatibility with CMake < 3.10 will be removed from a future version of65 CMake.6667 Update the VERSION argument <min> value. Or, use the <min>...<max> syntax68 to tell CMake that the project requires at least <min> but has been updated69 to work with policies introduced by <max> or earlier.70This warning is for project developers. Use -Wno-author or -Wno-deprecated71to suppress it.7273-- xxd not found, using xxdi.pl instead74-- ShellCheck not found75-- Rust Target: x86_64-unknown-linux-gnu76-- Determining required link libraries for target x86_64-unknown-linux-gnu77-- Required static libs for target x86_64-unknown-linux-gnu: gcc_s;util;rt;pthread;m;dl;c78-- Found Rust: /nix/store/hr3npzrq9l029s5hf948by203m6qz3lw-rustc-wrapper-1.98.1/bin/rustc (found version "1.98.1")79-- Using Corrosion as a subdirectory80-- Rust Feature: simd_avx281-- Could NOT find Git (missing: GIT_EXECUTABLE) 82CMake Warning at lib/prostt5/cmake/build-info.cmake:14 (message):83 Git not found. Build info will not be accurate.84Call Stack (most recent call first):85 lib/prostt5/CMakeLists.txt:82 (include)868788-- Performing Test CMAKE_HAVE_LIBC_PTHREAD89-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success90-- Found Threads: TRUE91-- Warning: ccache not found - consider installing it for faster compilation or disable this warning with GGML_CCACHE=OFF92-- CMAKE_SYSTEM_PROCESSOR: x86_6493-- Including CPU backend94-- x86 detected95-- Adding CPU backend variant ggml-cpu: -msse2;-msse3;-mssse3;-msse4.1;-mf16c;-mfma;-mavx;-mavx2 GGML_SSE41;GGML_F16C;GGML_FMA;GGML_AVX;GGML_AVX296-- Configuring done (3.3s)97-- Generating done (0.1s)98CMake Warning (unused-cli):99 Manually-specified variables were not used by the project:100101 BUILD_TESTING102 CMAKE_EXPORT_NO_PACKAGE_REGISTRY103104105-- Build files have been written to: /build/source/build106cmake: enabled parallel building107cmake: enabled parallel installingbuildPhase
108build flags: -j48 SHELL=/nix/store/10dxp0qxqxxsyiljrh2kp0xqhz6arhcx-bash-5.3p15/bin/bash109[ 0%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o110[ 0%] Built target cargo-prebuild_block_aligner_c111[ 0%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o112[ 2%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o113[ 2%] Building C object lib/mmseqs/lib/microtar/CMakeFiles/microtar.dir/microtar.c.o114[ 2%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o115[ 2%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/fse_decompress.c.o116[ 2%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/entropy_common.c.o117[ 2%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o118[ 2%] Building C object 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lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_opt.c.o178[ 20%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/torsion_angle.cpp.o179[ 20%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h180[ 20%] Linking C static library libmicrotar.a181[ 20%] Generating ../generated/makepaddeddb.sh.h182[ 20%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h183/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base':184/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]185 373 | ret->bound = s->bound;186 | ^~187In function 'new_expr',188 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:372:19:189/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'190 88 | te_expr *ret = malloc(size);191 | ^~~~~~~~~~~~192In function 'new_expr',193 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19:194/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]195 93 | ret->type = type;196 | ~~~~~~~~~~^~~~~~197/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'198 88 | te_expr *ret = malloc(size);199 | ^~~~~~~~~~~~200/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base':201/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]202 367 | ret->value = s->value;203 | ^~204In function 'new_expr',205 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19:206/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'207 88 | te_expr *ret = malloc(size);208 | ^~~~~~~~~~~~209/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base':210/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]211 446 | ret->value = NAN;212 | ^~213In function 'new_expr',214 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:444:19:215/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'216 88 | te_expr *ret = malloc(size);217 | ^~~~~~~~~~~~218[ 20%] Generating ../generated/Library255_may17.lib.h219[ 20%] Built target microtar220[ 21%] Generating ../generated/result2structprofile.sh.h221[ 21%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-quants.c.o222 Compiling block_aligner_c v0.4.0 (/build/source/lib/block-aligner/c)223[ 21%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_ldm.c.o224[ 21%] Generating ../generated/libPolished_8.lib.h225[ 22%] Generating ../generated/createstructsubdb.sh.h226[ 23%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/huf_decompress.c.o227[ 24%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/utility.cpp.o228[ 24%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress.c.o229[ 24%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress_block.c.o230[ 24%] Generating ../generated/multimersearch.sh.h231[ 24%] Generating ../generated/easymultimersearch.sh.h232[ 24%] Generating ../generated/cs219.lib.h233[ 24%] Generating ../generated/multimercluster.sh.h234[ 24%] Generating ../generated/easymultimercluster.sh.h235[ 24%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_ddict.c.o236[ 24%] Generating ../generated/krona_prelude.html.h237[ 24%] Generating ../generated/result_viz_prelude.html.zst.h238[ 25%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/cover.c.o239[ 26%] Generating ../generated/K4000.crf.h240[ 26%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/fastcover.c.o241[ 26%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/divsufsort.c.o242[ 26%] Linking C static library libtinyexpr.a243warning: `extern` declarations without an explicit ABI are deprecated244 --> ../src/ffi.rs:32:12245 |24632 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix {247 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`248 |249 = note: `#[warn(missing_abi)]` on by default250251warning: `extern` declarations without an explicit ABI are deprecated252 --> ../src/ffi.rs:39:12253 |25439 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) {255 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`256257warning: `extern` declarations without an explicit ABI are deprecated258 --> ../src/ffi.rs:46:12259 |26046 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) {261 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`262263warning: `extern` declarations without an explicit ABI are deprecated264 --> ../src/ffi.rs:61:12265 |26661 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile {267 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`268269warning: `extern` declarations without an explicit ABI are deprecated270 --> ../src/ffi.rs:68:12271 |27268 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize {273 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`274275warning: `extern` declarations without an explicit ABI are deprecated276 --> ../src/ffi.rs:76:12277 |27876 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) {279 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`280281warning: `extern` declarations without an explicit ABI are deprecated282 --> ../src/ffi.rs:86:12283 |28486 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) {285 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`286287warning: `extern` declarations without an explicit ABI are deprecated288 --> ../src/ffi.rs:97:12289 |29097 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {291 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`292293warning: `extern` declarations without an explicit ABI are deprecated294 --> ../src/ffi.rs:108:12295 |296108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {297 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`298299warning: `extern` declarations without an explicit ABI are deprecated300 --> ../src/ffi.rs:119:12301 |302119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {303 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`304305warning: `extern` declarations without an explicit ABI are deprecated306 --> ../src/ffi.rs:126:12307 |308126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 {309 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`310311warning: `extern` declarations without an explicit ABI are deprecated312 --> ../src/ffi.rs:133:12313 |314133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 {315 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`316317warning: `extern` declarations without an explicit ABI are deprecated318 --> ../src/ffi.rs:140:12319 |320140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) {321 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`322323warning: `extern` declarations without an explicit ABI are deprecated324 --> ../src/ffi.rs:149:12325 |326149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar {327 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`328329warning: `extern` declarations without an explicit ABI are deprecated330 --> ../src/ffi.rs:156:12331 |332156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen {333 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`334335warning: `extern` declarations without an explicit ABI are deprecated336 --> ../src/ffi.rs:163:12337 |338163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize {339 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`340341warning: `extern` declarations without an explicit ABI are deprecated342 --> ../src/ffi.rs:170:12343 |344170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) {345 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`346347warning: `extern` declarations without an explicit ABI are deprecated348 --> ../src/ffi.rs:179:12349 |350179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes {351 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`352353warning: `extern` declarations without an explicit ABI are deprecated354 --> ../src/ffi.rs:186:12355 |356186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) {357 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`358359warning: `extern` declarations without an explicit ABI are deprecated360 --> ../src/ffi.rs:194:12361 |362194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) {363 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`364365warning: `extern` declarations without an explicit ABI are deprecated366 --> ../src/ffi.rs:203:12367 |368203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias {369 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`370371warning: `extern` declarations without an explicit ABI are deprecated372 --> ../src/ffi.rs:210:12373 |374210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) {375 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`376377warning: `extern` declarations without an explicit ABI are deprecated378 --> ../src/ffi.rs:218:12379 |380218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) {381 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`382383warning: `extern` declarations without an explicit ABI are deprecated384 --> ../src/ffi.rs:237:20385 |386237 | pub unsafe extern fn $new_name(query_len: usize,387 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`388...389315 | / gen_functions!(390316 | | block_new_aa,391317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",392318 | | block_align_aa,393... |394332 | | AAMatrix, AAProfile, false, false395333 | | );396 | |_- in this macro invocation397 |398 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)399400warning: `extern` declarations without an explicit ABI are deprecated401 --> ../src/ffi.rs:246:20402 |403246 | pub unsafe extern fn $align_name(b: BlockHandle,404 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`405...406315 | / gen_functions!(407316 | | block_new_aa,408317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",409318 | | block_align_aa,410... |411332 | | AAMatrix, AAProfile, false, false412333 | | );413 | |_- in this macro invocation414 |415 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)416417warning: `extern` declarations without an explicit ABI are deprecated418 --> ../src/ffi.rs:259:20419 |420259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,421 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`422...423315 | / gen_functions!(424316 | | block_new_aa,425317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",426318 | | block_align_aa,427... |428332 | | AAMatrix, AAProfile, false, false429333 | | );430 | |_- in this macro invocation431 |432 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)433434warning: `extern` declarations without an explicit ABI are deprecated435 --> ../src/ffi.rs:270:20436 |437270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,438 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`439...440315 | / gen_functions!(441316 | | block_new_aa,442317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",443318 | | block_align_aa,444... |445332 | | AAMatrix, AAProfile, false, false446333 | | );447 | |_- in this macro invocation448 |449 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)450451warning: `extern` declarations without an explicit ABI are deprecated452 --> ../src/ffi.rs:288:20453 |454288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {455 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`456...457315 | / gen_functions!(458316 | | block_new_aa,459317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",460318 | | block_align_aa,461... |462332 | | AAMatrix, AAProfile, false, false463333 | | );464 | |_- in this macro invocation465 |466 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)467468warning: `extern` declarations without an explicit ABI are deprecated469 --> ../src/ffi.rs:295:20470 |471295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {472 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`473...474315 | / gen_functions!(475316 | | block_new_aa,476317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",477318 | | block_align_aa,478... |479332 | | AAMatrix, AAProfile, false, false480333 | | );481 | |_- in this macro invocation482 |483 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)484485warning: `extern` declarations without an explicit ABI are deprecated486 --> ../src/ffi.rs:302:20487 |488302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...489 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`490...491315 | / gen_functions!(492316 | | block_new_aa,493317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",494318 | | block_align_aa,495... |496332 | | AAMatrix, AAProfile, false, false497333 | | );498 | |_- in this macro invocation499 |500 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)501502warning: `extern` declarations without an explicit ABI are deprecated503 --> ../src/ffi.rs:309:20504 |505309 | pub unsafe extern fn $free_name(b: BlockHandle) {506 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`507...508315 | / gen_functions!(509316 | | block_new_aa,510317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",511318 | | block_align_aa,512... |513332 | | AAMatrix, AAProfile, false, false514333 | | );515 | |_- in this macro invocation516 |517 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)518519warning: `extern` declarations without an explicit ABI are deprecated520 --> ../src/ffi.rs:237:20521 |522237 | pub unsafe extern fn $new_name(query_len: usize,523 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`524...525335 | / gen_functions!(526336 | | block_new_aa_xdrop,527337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",528338 | | block_align_aa_xdrop,529... |530352 | | AAMatrix, AAProfile, false, true531353 | | );532 | |_- in this macro invocation533 |534 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)535536warning: `extern` declarations without an explicit ABI are deprecated537 --> ../src/ffi.rs:246:20538 |539246 | pub unsafe extern fn $align_name(b: BlockHandle,540 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`541...542335 | / gen_functions!(543336 | | block_new_aa_xdrop,544337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",545338 | | block_align_aa_xdrop,546... |547352 | | AAMatrix, AAProfile, false, true548353 | | );549 | |_- in this macro invocation550 |551 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)552553warning: `extern` declarations without an explicit ABI are deprecated554 --> ../src/ffi.rs:259:20555 |556259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,557 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`558...559335 | / gen_functions!(560336 | | block_new_aa_xdrop,561337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",562338 | | block_align_aa_xdrop,563... |564352 | | AAMatrix, AAProfile, false, true565353 | | );566 | |_- in this macro invocation567 |568 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)569570warning: `extern` declarations without an explicit ABI are deprecated571 --> ../src/ffi.rs:270:20572 |573270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,574 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`575...576335 | / gen_functions!(577336 | | block_new_aa_xdrop,578337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",579338 | | block_align_aa_xdrop,580... |581352 | | AAMatrix, AAProfile, false, true582353 | | );583 | |_- in this macro invocation584 |585 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)586587warning: `extern` declarations without an explicit ABI are deprecated588 --> ../src/ffi.rs:288:20589 |590288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {591 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`592...593335 | / gen_functions!(594336 | | block_new_aa_xdrop,595337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",596338 | | block_align_aa_xdrop,597... |598352 | | AAMatrix, AAProfile, false, true599353 | | );600 | |_- in this macro invocation601 |602 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)603604warning: `extern` declarations without an explicit ABI are deprecated605 --> ../src/ffi.rs:295:20606 |607295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {608 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`609...610335 | / gen_functions!(611336 | | block_new_aa_xdrop,612337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",613338 | | block_align_aa_xdrop,614... |615352 | | AAMatrix, AAProfile, false, true616353 | | );617 | |_- in this macro invocation618 |619 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)620621warning: `extern` declarations without an explicit ABI are deprecated622 --> ../src/ffi.rs:302:20623 |624302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...625 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`626...627335 | / gen_functions!(628336 | | block_new_aa_xdrop,629337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",630338 | | block_align_aa_xdrop,631... |632352 | | AAMatrix, AAProfile, false, true633353 | | );634 | |_- in this macro invocation635 |636 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)637638warning: `extern` declarations without an explicit ABI are deprecated639 --> ../src/ffi.rs:309:20640 |641309 | pub unsafe extern fn $free_name(b: BlockHandle) {642 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`643...644335 | / gen_functions!(645336 | | block_new_aa_xdrop,646337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",647338 | | block_align_aa_xdrop,648... |649352 | | AAMatrix, AAProfile, false, true650353 | | );651 | |_- in this macro invocation652 |653 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)654655warning: `extern` declarations without an explicit ABI are deprecated656 --> ../src/ffi.rs:237:20657 |658237 | pub unsafe extern fn $new_name(query_len: usize,659 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`660...661355 | / gen_functions!(662356 | | block_new_aa_trace,663357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",664358 | | block_align_aa_trace,665... |666372 | | AAMatrix, AAProfile, true, false667373 | | );668 | |_- in this macro invocation669 |670 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)671672warning: `extern` declarations without an explicit ABI are deprecated673 --> ../src/ffi.rs:246:20674 |675246 | pub unsafe extern fn $align_name(b: BlockHandle,676 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`677...678355 | / gen_functions!(679356 | | block_new_aa_trace,680357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",681358 | | block_align_aa_trace,682... |683372 | | AAMatrix, AAProfile, true, false684373 | | );685 | |_- in this macro invocation686 |687 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)688689warning: `extern` declarations without an explicit ABI are deprecated690 --> ../src/ffi.rs:259:20691 |692259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,693 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`694...695355 | / gen_functions!(696356 | | block_new_aa_trace,697357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",698358 | | block_align_aa_trace,699... |700372 | | AAMatrix, AAProfile, true, false701373 | | );702 | |_- in this macro invocation703 |704 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)705706warning: `extern` declarations without an explicit ABI are deprecated707 --> ../src/ffi.rs:270:20708 |709270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,710 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`711...712355 | / gen_functions!(713356 | | block_new_aa_trace,714357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",715358 | | block_align_aa_trace,716... |717372 | | AAMatrix, AAProfile, true, false718373 | | );719 | |_- in this macro invocation720 |721 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)722723warning: `extern` declarations without an explicit ABI are deprecated724 --> ../src/ffi.rs:288:20725 |726288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {727 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`728...729355 | / gen_functions!(730356 | | block_new_aa_trace,731357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",732358 | | block_align_aa_trace,733... |734372 | | AAMatrix, AAProfile, true, false735373 | | );736 | |_- in this macro invocation737 |738 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)739740warning: `extern` declarations without an explicit ABI are deprecated741 --> ../src/ffi.rs:295:20742 |743295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {744 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`745...746355 | / gen_functions!(747356 | | block_new_aa_trace,748357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",749358 | | block_align_aa_trace,750... |751372 | | AAMatrix, AAProfile, true, false752373 | | );753 | |_- in this macro invocation754 |755 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)756757warning: `extern` declarations without an explicit ABI are deprecated758 --> ../src/ffi.rs:302:20759 |760302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...761 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`762...763355 | / gen_functions!(764356 | | block_new_aa_trace,765357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",766358 | | block_align_aa_trace,767... |768372 | | AAMatrix, AAProfile, true, false769373 | | );770 | |_- in this macro invocation771 |772 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)773774warning: `extern` declarations without an explicit ABI are deprecated775 --> ../src/ffi.rs:309:20776 |777309 | pub unsafe extern fn $free_name(b: BlockHandle) {778 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`779...780355 | / gen_functions!(781356 | | block_new_aa_trace,782357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",783358 | | block_align_aa_trace,784... |785372 | | AAMatrix, AAProfile, true, false786373 | | );787 | |_- in this macro invocation788 |789 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)790791warning: `extern` declarations without an explicit ABI are deprecated792 --> ../src/ffi.rs:237:20793 |794237 | pub unsafe extern fn $new_name(query_len: usize,795 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`796...797375 | / gen_functions!(798376 | | block_new_aa_trace_xdrop,799377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",800378 | | block_align_aa_trace_xdrop,801... |802392 | | AAMatrix, AAProfile, true, true803393 | | );804 | |_- in this macro invocation805 |806 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)807808warning: `extern` declarations without an explicit ABI are deprecated809 --> ../src/ffi.rs:246:20810 |811246 | pub unsafe extern fn $align_name(b: BlockHandle,812 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`813...814375 | / gen_functions!(815376 | | block_new_aa_trace_xdrop,816377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",817378 | | block_align_aa_trace_xdrop,818... |819392 | | AAMatrix, AAProfile, true, true820393 | | );821 | |_- in this macro invocation822 |823 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)824825warning: `extern` declarations without an explicit ABI are deprecated826 --> ../src/ffi.rs:259:20827 |828259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,829 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`830...831375 | / gen_functions!(832376 | | block_new_aa_trace_xdrop,833377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",834378 | | block_align_aa_trace_xdrop,835... |836392 | | AAMatrix, AAProfile, true, true837393 | | );838 | |_- in this macro invocation839 |840 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)841842warning: `extern` declarations without an explicit ABI are deprecated843 --> ../src/ffi.rs:270:20844 |845270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,846 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`847...848375 | / gen_functions!(849376 | | block_new_aa_trace_xdrop,850377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",851378 | | block_align_aa_trace_xdrop,852... |853392 | | AAMatrix, AAProfile, true, true854393 | | );855 | |_- in this macro invocation856 |857 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)858859warning: `extern` declarations without an explicit ABI are deprecated860 --> ../src/ffi.rs:288:20861 |862288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {863 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`864...865375 | / gen_functions!(866376 | | block_new_aa_trace_xdrop,867377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",868378 | | block_align_aa_trace_xdrop,869... |870392 | | AAMatrix, AAProfile, true, true871393 | | );872 | |_- in this macro invocation873 |874 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)875876warning: `extern` declarations without an explicit ABI are deprecated877 --> ../src/ffi.rs:295:20878 |879295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {880 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`881...882375 | / gen_functions!(883376 | | block_new_aa_trace_xdrop,884377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",885378 | | block_align_aa_trace_xdrop,886... |887392 | | AAMatrix, AAProfile, true, true888393 | | );889 | |_- in this macro invocation890 |891 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)892893warning: `extern` declarations without an explicit ABI are deprecated894 --> ../src/ffi.rs:302:20895 |896302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...897 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`898...899375 | / gen_functions!(900376 | | block_new_aa_trace_xdrop,901377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",902378 | | block_align_aa_trace_xdrop,903... |904392 | | AAMatrix, AAProfile, true, true905393 | | );906 | |_- in this macro invocation907 |908 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)909910warning: `extern` declarations without an explicit ABI are deprecated911 --> ../src/ffi.rs:309:20912 |913309 | pub unsafe extern fn $free_name(b: BlockHandle) {914 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`915...916375 | / gen_functions!(917376 | | block_new_aa_trace_xdrop,918377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",919378 | | block_align_aa_trace_xdrop,920... |921392 | | AAMatrix, AAProfile, true, true922393 | | );923 | |_- in this macro invocation924 |925 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)926927[ 26%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/zdict.c.o928[ 26%] Built target tinyexpr929[ 26%] Generating ../generated/easysearch.sh.h930[ 27%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_common.c.o931[ 28%] Generating ../generated/easycluster.sh.h932[ 28%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_compress.c.o933[ 28%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_decompress.c.o934[ 28%] Generating ../generated/easytaxonomy.sh.h935[ 28%] Generating ../generated/easyrbh.sh.h936[ 28%] Generating ../generated/blastpgp.sh.h937[ 28%] Generating ../generated/blastp.sh.h938[ 29%] Generating ../generated/rbh.sh.h939[ 29%] Generating ../generated/map.sh.h940[ 30%] Generating ../generated/linclust.sh.h941[ 30%] Generating ../generated/clustering.sh.h942[ 30%] Generating ../generated/cascaded_clustering.sh.h943[ 31%] Generating ../generated/update_clustering.sh.h944[ 31%] Generating ../generated/searchtargetprofile.sh.h945[ 32%] Generating ../generated/createindex.sh.h946[ 32%] Generating ../generated/createtaxdb.sh.h947[ 32%] Generating ../generated/taxpercontig.sh.h948[ 32%] Generating ../generated/translated_search.sh.h949[ 32%] Generating ../generated/multihitdb.sh.h950[ 33%] Generating ../generated/multihitsearch.sh.h951[ 33%] Built target local-generated952[ 34%] Generating ../generated/enrich.sh.h953[ 34%] Generating ../generated/blastn.sh.h954[ 34%] Generating ../generated/nucleotide_clustering.sh.h955[ 34%] Generating ../generated/searchslicedtargetprofile.sh.h956[ 35%] Generating ../generated/taxonomy.sh.h957[ 34%] Generating ../generated/linsearch.sh.h958[ 35%] Generating ../generated/databases.sh.h959[ 35%] Generating ../generated/iterativepp.sh.h960[ 35%] Generating ../generated/tsv2exprofiledb.sh.h961[ 35%] Built target ksw2962[ 36%] Linking CXX static library libtantan.a963[ 36%] Built target tantan964[ 36%] Built target alp965warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions)966 Finished `release` profile [optimized] target(s) in 3.72s967Copying byproducts `libblock_aligner_c.a` to /build/source/build968[ 36%] Built target _cargo-build_block_aligner_c969[ 36%] Built target cargo-build_block_aligner_c970[ 36%] Built target generated971[ 36%] Linking CXX static library libggml-base.a972[ 36%] Built target ggml-base973[ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-hbm.cpp.o974[ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu.cpp.o975[ 37%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu.c.o976[ 37%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-quants.c.o977[ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/amx/amx.cpp.o978[ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-traits.cpp.o979[ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/amx/mmq.cpp.o980[ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-aarch64.cpp.o981[ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/llamafile/sgemm.cpp.o982[ 38%] Linking CXX static library libfoldcomp.a983[ 38%] Built target foldcomp984[ 38%] Building CXX object src/strucclustutils/CMakeFiles/gemmiwrapper.dir/GemmiWrapper.cpp.o985[ 38%] Linking C static library libzstd.a986[ 38%] Built target libzstd_static987[ 38%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o988[ 38%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o989[ 39%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o990[ 39%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o991[ 39%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o992[ 40%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o993[ 40%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o994[ 40%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o995[ 40%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o996[ 40%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o997[ 40%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o998[ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o999[ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o1000[ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o1001[ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o1002[ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o1003[ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o1004[ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o1005[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o1006[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o1007[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o1008[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o1009[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o1010[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o1011[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o1012[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o1013[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o1014[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o1015[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o1016[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o1017[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o1018[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o1019[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o1020[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o1021[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o1022[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o1023[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o1024[ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o1025[ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o1026[ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o1027[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o1028[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o1029[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o1030[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o1031[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o1032[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o1033[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o1034[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o1035[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o1036[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o1037[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o1038[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o1039[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o1040[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o1041[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o1042[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o1043[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o1044[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o1045[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o1046[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o1047[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o1048[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o1049[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o1050[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o1051[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o1052[ 56%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o1053[ 56%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o1054[ 56%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o1055[ 56%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o1056[ 56%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o1057[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o1058[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o1059[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o1060[ 58%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o1061[ 58%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o1062[ 58%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o1063[ 58%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o1064[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o1065[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o1066[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o1067/build/source/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp: In function 'void runFilterOnCpu(Parameters&, BaseMatrix*, int8_t*, DBReader<unsigned int>*, DBReader<unsigned int>*, SequenceLookup*, bool, DBWriter&, EvalueComputation*, QueryMatcherTaxonomyHook*, int)':1068/build/source/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp:407:19: warning: 'master' construct deprecated since OpenMP 5.1, use 'masked' [-Wdeprecated-openmp]1069 407 | #pragma omp master1070 | ^1071[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o1072[ 60%] Linking CXX static library libggml-cpu.a1073[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o1074[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o1075[ 61%] Built target ggml-cpu1076[ 61%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml.dir/ggml-backend-reg.cpp.o1077[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o1078[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o1079[ 62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o1080[ 62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o1081[ 62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o1082[ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o1083[ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o1084[ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o1085In file included from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/algorithm:62,1086 from /build/source/lib/mmseqs/lib/simd/simd.h:9,1087 from /build/source/lib/mmseqs/src/commons/CSProfile.h:9,1088 from /build/source/lib/mmseqs/src/commons/CSProfile.cpp:5:1089In function 'void std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]',1090 inlined from 'void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]' at /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/stl_algobase.h:977:21,1091 inlined from 'void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]' at /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/stl_algobase.h:1008:20,1092 inlined from 'float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]' at /build/source/lib/mmseqs/src/commons/CSProfile.cpp:383:14,1093 inlined from 'float* CSProfile::computeProfileCs(int, float*, float*, float, float)' at /build/source/lib/mmseqs/src/commons/CSProfile.cpp:350:58:1094/nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/stl_algobase.h:923:18: warning: 'void* __builtin_memset(void*, int, long unsigned int)' specified size between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]1095 923 | *__first = __val;1096 | ~~~~~~~~~^~~~~~~1097In member function 'float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]',1098 inlined from 'float* CSProfile::computeProfileCs(int, float*, float*, float, float)' at /build/source/lib/mmseqs/src/commons/CSProfile.cpp:350:58:1099/build/source/lib/mmseqs/src/commons/CSProfile.cpp:383:21: note: destination object allocated here1100 383 | std::fill(sums, sums + seqLen, 0.0);1101 | ^~~~1102[ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o1103In function 'void std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]',1104 inlined from 'void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]' at /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/stl_algobase.h:977:21,1105 inlined from 'void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]' at /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/stl_algobase.h:1008:20,1106 inlined from 'float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]' at /build/source/lib/mmseqs/src/commons/CSProfile.cpp:383:14,1107 inlined from 'float* CSProfile::computeSequenceCs(unsigned char*, int, float)' at /build/source/lib/mmseqs/src/commons/CSProfile.cpp:354:58:1108/nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/stl_algobase.h:923:18: warning: 'void* __builtin_memset(void*, int, long unsigned int)' specified size between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]1109 923 | *__first = __val;1110 | ~~~~~~~~~^~~~~~~1111In member function 'float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]',1112 inlined from 'float* CSProfile::computeSequenceCs(unsigned char*, int, float)' at /build/source/lib/mmseqs/src/commons/CSProfile.cpp:354:58:1113/build/source/lib/mmseqs/src/commons/CSProfile.cpp:383:21: note: destination object allocated here1114 383 | std::fill(sums, sums + seqLen, 0.0);1115 | ^~~~1116[ 64%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o1117/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp: In function 'std::wstring utf8_to_utf16(const std::string&)':1118/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:76:10: warning: 'template<class _Codecvt, class _Elem, class _Wide_alloc, class _Byte_alloc> class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations]1119 76 | std::wstring_convert<std::codecvt_utf8_utf16<wchar_t>> converter;1120 | ^~~~~~~~~~~~~~~1121In file included from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/locale:47,1122 from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/fs_path.h:36,1123 from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/filesystem:55,1124 from /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:7:1125/nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/locale_conv.h:265:33: note: declared here1126 265 | class _GLIBCXX17_DEPRECATED wstring_convert1127 | ^~~~~~~~~~~~~~~1128/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp: In function 'std::string utf16_to_utf8(const std::wstring&)':1129/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:81:10: warning: 'template<class _Codecvt, class _Elem, class _Wide_alloc, class _Byte_alloc> class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations]1130 81 | std::wstring_convert<std::codecvt_utf8_utf16<wchar_t>> converter;1131 | ^~~~~~~~~~~~~~~1132/nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/locale_conv.h:265:33: note: declared here1133 265 | class _GLIBCXX17_DEPRECATED wstring_convert1134 | ^~~~~~~~~~~~~~~1135[ 64%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o1136[ 64%] Linking CXX static library libggml.a1137[ 64%] Built target ggml1138[ 65%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama.cpp.o1139[ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o1140[ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o1141[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o1142[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o1143[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o1144[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o1145In file included from /build/source/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp:15:1146In destructor 'virtual SubstitutionMatrixProfileStates::~SubstitutionMatrixProfileStates()',1147 inlined from 'virtual SubstitutionMatrixProfileStates::~SubstitutionMatrixProfileStates()' at /build/source/lib/mmseqs/src/commons/SubstitutionMatrixProfileStates.h:90:5,1148 inlined from 'int prefilterInternal(int, const char**, const Command&, int)' at /build/source/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp:526:12:1149/build/source/lib/mmseqs/src/commons/SubstitutionMatrixProfileStates.h:90:5: warning: array subscript 'SubstitutionMatrixProfileStates[0]' is partly outside array bounds of 'BaseMatrix [1]' [-Warray-bounds=]1150 90 | };1151 | ^1152/build/source/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp: In function 'int prefilterInternal(int, const char**, const Command&, int)':1153/build/source/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp:473:98: note: object of size 160 allocated by 'operator new'1154 473 | subMat = new NucleotideMatrix(par.scoringMatrixFile.values.nucleotide().c_str(), 1.0, 0.0);1155 | ^1156/build/source/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp:483:99: note: object of size 152 allocated by 'operator new'1157 483 | subMat = new SubstitutionMatrix(par.scoringMatrixFile.values.aminoacid().c_str(), 2.0, 0.0);1158 | ^1159[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o1160[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o1161[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o1162[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o1163[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o1164[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o1165[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/gpuserver.cpp.o1166[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o1167[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o1168[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o1169[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o1170[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o1171[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o1172[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o1173[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o1174[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o1175[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o1176[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o1177[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o1178[ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o1179[ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o1180[ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o1181[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o1182[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o1183[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o1184[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o1185[ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o1186[ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o1187[ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o1188[ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o1189[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o1190[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o1191[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o1192[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o1193[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o1194[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o1195[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o1196[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o1197[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o1198[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o1199[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o1200[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o1201[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o1202[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o1203[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o1204[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o1205[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o1206[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o1207/build/source/lib/mmseqs/src/util/result2flat.cpp: In function 'int result2flat(int, const char**, const Command&)':1208/build/source/lib/mmseqs/src/util/result2flat.cpp:65:37: warning: ignoring return value of 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>; size_type = long unsigned int]', declared with attribute 'nodiscard' [-Wunused-result]1209 65 | dbKeyBuffer.size();1210 | ~~~~~~~~~~~~~~~~^~1211In file included from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/string:58,1212 from /build/source/lib/mmseqs/src/commons/Parameters.h:7,1213 from /build/source/lib/mmseqs/src/util/result2flat.cpp:2:1214/nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/basic_string.h:1187:7: note: declared here1215 1187 | size() const _GLIBCXX_NOEXCEPT1216 | ^~~~1217[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o1218[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o1219[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o1220[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o1221[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o1222[ 81%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o1223[ 81%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o1224[ 81%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o1225[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o1226[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o1227[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o1228[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o1229[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o1230[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o1231[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o1232[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o1233[ 84%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o1234[ 84%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o1235[ 84%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o1236[ 84%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o1237[ 85%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o1238[ 85%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o1239[ 85%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o1240[ 86%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o1241[ 86%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o1242[ 86%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-vocab.cpp.o1243[ 86%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-grammar.cpp.o1244[ 87%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-sampling.cpp.o1245[ 87%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/unicode.cpp.o1246[ 87%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/unicode-data.cpp.o1247/build/source/lib/prostt5/src/unicode.cpp: In function 'std::wstring unicode_wstring_from_utf8(const std::string&)':1248/build/source/lib/prostt5/src/unicode.cpp:210:10: warning: 'template<class _Codecvt, class _Elem, class _Wide_alloc, class _Byte_alloc> class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations]1249 210 | std::wstring_convert<std::codecvt_utf8<wchar_t>> conv;1250 | ^~~~~~~~~~~~~~~1251In file included from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/locale:47,1252 from /nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/regex:43,1253 from /build/source/lib/prostt5/src/unicode.cpp:13:1254/nix/store/5q6bdxkp7lc70gn9mnf4yiybrx8ry5xq-gcc-16.2.0/include/c++/16.2.0/bits/locale_conv.h:265:33: note: declared here1255 265 | class _GLIBCXX17_DEPRECATED wstring_convert1256 | ^~~~~~~~~~~~~~~1257[ 88%] Linking CXX static library libgemmiwrapper.a1258[ 88%] Built target gemmiwrapper1259[ 88%] Linking CXX static library libllama.a1260[ 88%] Built target llama1261[ 88%] Building CXX object src/CMakeFiles/prostt5.dir/strucclustutils/ProstT5.cpp.o1262[ 89%] Linking CXX static library libprostt5.a1263[ 89%] Built target prostt51264[ 89%] Linking CXX static library libmmseqs-framework.a1265[ 89%] Built target mmseqs-framework1266[ 89%] Building CXX object lib/pulchra/CMakeFiles/pulchra.dir/pulchra.cpp.o1267[ 89%] Building CXX object lib/3di/CMakeFiles/3di.dir/structureto3di.cpp.o1268[ 90%] Building CXX object lib/tmalign/CMakeFiles/tmalign.dir/TMalign.cpp.o1269[ 90%] Building CXX object lib/3di/CMakeFiles/3di.dir/structureto3diseqdist.cpp.o1270[ 90%] Building CXX object lib/tmalign/CMakeFiles/tmalign.dir/affineneedlemanwunsch.cpp.o1271[ 90%] Building CXX object lib/kerasify/CMakeFiles/kerasify.dir/keras_model.cpp.o1272[ 90%] Linking CXX static library libpulchra.a1273[ 90%] Built target pulchra1274[ 90%] Linking CXX static library lib3di.a1275[ 90%] Built target 3di1276In file included from /build/source/lib/tmalign/TMalign.cpp:19:1277/build/source/lib/tmalign/Kabsch.h: In instantiation of 'void rmatrix(T, T (*)[3], T (*)[3]) [with T = float]':1278/build/source/lib/tmalign/Kabsch.h:301:12: required from here1279 301 | rmatrix((float)d,r,u);1280 | ~~~~~~~^~~~~~~~~~~~~~1281/build/source/lib/tmalign/Kabsch.h:83:7: warning: variable 'a00' set but not used [-Wunused-but-set-variable=]1282 83 | T a00=(r[0][0]+r[1][1]+r[2][2]);1283 | ^~~1284/build/source/lib/tmalign/Kabsch.h: In instantiation of 'void rmatrix(T, T (*)[3], T (*)[3]) [with T = double]':1285/build/source/lib/tmalign/Kabsch.h:707:20: required from here1286 707 | rmatrix<double>(d,mr,u);1287 | ~~~~~~~~~~~~~~~^~~~~~~~1288/build/source/lib/tmalign/Kabsch.h:83:7: warning: variable 'a00' set but not used [-Wunused-but-set-variable=]1289 83 | T a00=(r[0][0]+r[1][1]+r[2][2]);1290 | ^~~1291[ 90%] Linking CXX static library libkerasify.a1292[ 90%] Built target kerasify1293[ 90%] Linking CXX static library libtmalign.a1294[ 90%] Built target tmalign1295[ 90%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/structurerescorediagonal.cpp.o1296[ 90%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/samplemulambda.cpp.o1297[ 90%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/structcreatedb.cpp.o1298[ 92%] Building CXX object src/CMakeFiles/foldseek-framework.dir/commons/LocalParameters.cpp.o1299[ 92%] Building CXX object 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object src/CMakeFiles/foldseek-framework.dir/workflow/EasyMultimerCluster.cpp.o1329[100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/FoldseekBase.cpp.o1330/build/source/src/strucclustutils/structureto3didescriptor.cpp: In function 'int structureto3didescriptor(int, const char**, const Command&)':1331/build/source/src/strucclustutils/structureto3didescriptor.cpp:62:12: warning: variable 'incorrectFiles' set but not used [-Wunused-but-set-variable=]1332 62 | size_t incorrectFiles = 0;1333 | ^~~~~~~~~~~~~~1334/build/source/src/strucclustutils/structureto3didescriptor.cpp:63:12: warning: variable 'toShort' set but not used [-Wunused-but-set-variable=]1335 63 | size_t toShort = 0;1336 | ^~~~~~~1337[100%] Linking CXX static library libfoldseek-framework.a1338[100%] Built target foldseek-framework1339[100%] Building CXX object src/CMakeFiles/foldseek.dir/foldseek.cpp.o1340[100%] Linking CXX executable foldseek1341[100%] Built target foldseek1342buildPhase completed in 1 minutes 34 secondsinstallPhase
1343install flags: -j48 SHELL=/nix/store/10dxp0qxqxxsyiljrh2kp0xqhz6arhcx-bash-5.3p15/bin/bash install1344[ 0%] Built target cargo-prebuild_block_aligner_c1345[ 1%] Built target version1346[ 6%] Built target local-generated1347[ 9%] Built target tinyexpr1348[ 17%] Built target generated1349[ 18%] Built target microtar1350[ 19%] Built target tantan1351[ 20%] Built target ksw21352[ 27%] Built target libzstd_static1353[ 29%] Built target ggml-base1354[ 32%] Built target foldcomp1355[ 36%] Built target alp1356warning: `extern` declarations without an explicit ABI are deprecated1357 --> ../src/ffi.rs:32:121358 |135932 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix {1360 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1361 |1362 = note: `#[warn(missing_abi)]` on by default13631364warning: `extern` declarations without an explicit ABI are deprecated1365 --> ../src/ffi.rs:39:121366 |136739 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) {1368 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13691370warning: `extern` declarations without an explicit ABI are deprecated1371 --> ../src/ffi.rs:46:121372 |137346 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) {1374 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13751376warning: `extern` declarations without an explicit ABI are deprecated1377 --> ../src/ffi.rs:61:121378 |137961 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile {1380 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13811382warning: `extern` declarations without an explicit ABI are deprecated1383 --> ../src/ffi.rs:68:121384 |138568 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize {1386 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13871388warning: `extern` declarations without an explicit ABI are deprecated1389 --> ../src/ffi.rs:76:121390 |139176 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) {1392 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13931394warning: `extern` declarations without an explicit ABI are deprecated1395 --> ../src/ffi.rs:86:121396 |139786 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) {1398 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13991400warning: `extern` declarations without an explicit ABI are deprecated1401 --> ../src/ffi.rs:97:121402 |140397 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {1404 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14051406warning: `extern` declarations without an explicit ABI are deprecated1407 --> ../src/ffi.rs:108:121408 |1409108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {1410 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14111412warning: `extern` declarations without an explicit ABI are deprecated1413 --> ../src/ffi.rs:119:121414 |1415119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {1416 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14171418warning: `extern` declarations without an explicit ABI are deprecated1419 --> ../src/ffi.rs:126:121420 |1421126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 {1422 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14231424warning: `extern` declarations without an explicit ABI are deprecated1425 --> ../src/ffi.rs:133:121426 |1427133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 {1428 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14291430warning: `extern` declarations without an explicit ABI are deprecated1431 --> ../src/ffi.rs:140:121432 |1433140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) {1434 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14351436warning: `extern` declarations without an explicit ABI are deprecated1437 --> ../src/ffi.rs:149:121438 |1439149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar {1440 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14411442warning: `extern` declarations without an explicit ABI are deprecated1443 --> ../src/ffi.rs:156:121444 |1445156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen {1446 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14471448warning: `extern` declarations without an explicit ABI are deprecated1449 --> ../src/ffi.rs:163:121450 |1451163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize {1452 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14531454warning: `extern` declarations without an explicit ABI are deprecated1455 --> ../src/ffi.rs:170:121456 |1457170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) {1458 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14591460warning: `extern` declarations without an explicit ABI are deprecated1461 --> ../src/ffi.rs:179:121462 |1463179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes {1464 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14651466warning: `extern` declarations without an explicit ABI are deprecated1467 --> ../src/ffi.rs:186:121468 |1469186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) {1470 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14711472warning: `extern` declarations without an explicit ABI are deprecated1473 --> ../src/ffi.rs:194:121474 |1475194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) {1476 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14771478warning: `extern` declarations without an explicit ABI are deprecated1479 --> ../src/ffi.rs:203:121480 |1481203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias {1482 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14831484warning: `extern` declarations without an explicit ABI are deprecated1485 --> ../src/ffi.rs:210:121486 |1487210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) {1488 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14891490warning: `extern` declarations without an explicit ABI are deprecated1491 --> ../src/ffi.rs:218:121492 |1493218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) {1494 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14951496warning: `extern` declarations without an explicit ABI are deprecated1497 --> ../src/ffi.rs:237:201498 |1499237 | pub unsafe extern fn $new_name(query_len: usize,1500 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1501...1502315 | / gen_functions!(1503316 | | block_new_aa,1504317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1505318 | | block_align_aa,1506... |1507332 | | AAMatrix, AAProfile, false, false1508333 | | );1509 | |_- in this macro invocation1510 |1511 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15121513warning: `extern` declarations without an explicit ABI are deprecated1514 --> ../src/ffi.rs:246:201515 |1516246 | pub unsafe extern fn $align_name(b: BlockHandle,1517 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1518...1519315 | / gen_functions!(1520316 | | block_new_aa,1521317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1522318 | | block_align_aa,1523... |1524332 | | AAMatrix, AAProfile, false, false1525333 | | );1526 | |_- in this macro invocation1527 |1528 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15291530warning: `extern` declarations without an explicit ABI are deprecated1531 --> ../src/ffi.rs:259:201532 |1533259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1534 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1535...1536315 | / gen_functions!(1537316 | | block_new_aa,1538317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1539318 | | block_align_aa,1540... |1541332 | | AAMatrix, AAProfile, false, false1542333 | | );1543 | |_- in this macro invocation1544 |1545 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15461547warning: `extern` declarations without an explicit ABI are deprecated1548 --> ../src/ffi.rs:270:201549 |1550270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1551 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1552...1553315 | / gen_functions!(1554316 | | block_new_aa,1555317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1556318 | | block_align_aa,1557... |1558332 | | AAMatrix, AAProfile, false, false1559333 | | );1560 | |_- in this macro invocation1561 |1562 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15631564warning: `extern` declarations without an explicit ABI are deprecated1565 --> ../src/ffi.rs:288:201566 |1567288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1568 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1569...1570315 | / gen_functions!(1571316 | | block_new_aa,1572317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1573318 | | block_align_aa,1574... |1575332 | | AAMatrix, AAProfile, false, false1576333 | | );1577 | |_- in this macro invocation1578 |1579 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15801581warning: `extern` declarations without an explicit ABI are deprecated1582 --> ../src/ffi.rs:295:201583 |1584295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1585 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1586...1587315 | / gen_functions!(1588316 | | block_new_aa,1589317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1590318 | | block_align_aa,1591... |1592332 | | AAMatrix, AAProfile, false, false1593333 | | );1594 | |_- in this macro invocation1595 |1596 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15971598warning: `extern` declarations without an explicit ABI are deprecated1599 --> ../src/ffi.rs:302:201600 |1601302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1602 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1603...1604315 | / gen_functions!(1605316 | | block_new_aa,1606317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1607318 | | block_align_aa,1608... |1609332 | | AAMatrix, AAProfile, false, false1610333 | | );1611 | |_- in this macro invocation1612 |1613 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16141615warning: `extern` declarations without an explicit ABI are deprecated1616 --> ../src/ffi.rs:309:201617 |1618309 | pub unsafe extern fn $free_name(b: BlockHandle) {1619 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1620...1621315 | / gen_functions!(1622316 | | block_new_aa,1623317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1624318 | | block_align_aa,1625... |1626332 | | AAMatrix, AAProfile, false, false1627333 | | );1628 | |_- in this macro invocation1629 |1630 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16311632warning: `extern` declarations without an explicit ABI are deprecated1633 --> ../src/ffi.rs:237:201634 |1635237 | pub unsafe extern fn $new_name(query_len: usize,1636 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1637...1638335 | / gen_functions!(1639336 | | block_new_aa_xdrop,1640337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1641338 | | block_align_aa_xdrop,1642... |1643352 | | AAMatrix, AAProfile, false, true1644353 | | );1645 | |_- in this macro invocation1646 |1647 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16481649warning: `extern` declarations without an explicit ABI are deprecated1650 --> ../src/ffi.rs:246:201651 |1652246 | pub unsafe extern fn $align_name(b: BlockHandle,1653 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1654...1655335 | / gen_functions!(1656336 | | block_new_aa_xdrop,1657337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1658338 | | block_align_aa_xdrop,1659... |1660352 | | AAMatrix, AAProfile, false, true1661353 | | );1662 | |_- in this macro invocation1663 |1664 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16651666warning: `extern` declarations without an explicit ABI are deprecated1667 --> ../src/ffi.rs:259:201668 |1669259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1670 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1671...1672335 | / gen_functions!(1673336 | | block_new_aa_xdrop,1674337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1675338 | | block_align_aa_xdrop,1676... |1677352 | | AAMatrix, AAProfile, false, true1678353 | | );1679 | |_- in this macro invocation1680 |1681 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16821683warning: `extern` declarations without an explicit ABI are deprecated1684 --> ../src/ffi.rs:270:201685 |1686270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1687 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1688...1689335 | / gen_functions!(1690336 | | block_new_aa_xdrop,1691337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1692338 | | block_align_aa_xdrop,1693... |1694352 | | AAMatrix, AAProfile, false, true1695353 | | );1696 | |_- in this macro invocation1697 |1698 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16991700warning: `extern` declarations without an explicit ABI are deprecated1701 --> ../src/ffi.rs:288:201702 |1703288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1704 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1705...1706335 | / gen_functions!(1707336 | | block_new_aa_xdrop,1708337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1709338 | | block_align_aa_xdrop,1710... |1711352 | | AAMatrix, AAProfile, false, true1712353 | | );1713 | |_- in this macro invocation1714 |1715 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17161717warning: `extern` declarations without an explicit ABI are deprecated1718 --> ../src/ffi.rs:295:201719 |1720295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1721 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1722...1723335 | / gen_functions!(1724336 | | block_new_aa_xdrop,1725337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1726338 | | block_align_aa_xdrop,1727... |1728352 | | AAMatrix, AAProfile, false, true1729353 | | );1730 | |_- in this macro invocation1731 |1732 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17331734warning: `extern` declarations without an explicit ABI are deprecated1735 --> ../src/ffi.rs:302:201736 |1737302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1738 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1739...1740335 | / gen_functions!(1741336 | | block_new_aa_xdrop,1742337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1743338 | | block_align_aa_xdrop,1744... |1745352 | | AAMatrix, AAProfile, false, true1746353 | | );1747 | |_- in this macro invocation1748 |1749 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17501751warning: `extern` declarations without an explicit ABI are deprecated1752 --> ../src/ffi.rs:309:201753 |1754309 | pub unsafe extern fn $free_name(b: BlockHandle) {1755 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1756...1757335 | / gen_functions!(1758336 | | block_new_aa_xdrop,1759337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1760338 | | block_align_aa_xdrop,1761... |1762352 | | AAMatrix, AAProfile, false, true1763353 | | );1764 | |_- in this macro invocation1765 |1766 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17671768warning: `extern` declarations without an explicit ABI are deprecated1769 --> ../src/ffi.rs:237:201770 |1771237 | pub unsafe extern fn $new_name(query_len: usize,1772 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1773...1774355 | / gen_functions!(1775356 | | block_new_aa_trace,1776357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1777358 | | block_align_aa_trace,1778... |1779372 | | AAMatrix, AAProfile, true, false1780373 | | );1781 | |_- in this macro invocation1782 |1783 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17841785warning: `extern` declarations without an explicit ABI are deprecated1786 --> ../src/ffi.rs:246:201787 |1788246 | pub unsafe extern fn $align_name(b: BlockHandle,1789 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1790...1791355 | / gen_functions!(1792356 | | block_new_aa_trace,1793357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1794358 | | block_align_aa_trace,1795... |1796372 | | AAMatrix, AAProfile, true, false1797373 | | );1798 | |_- in this macro invocation1799 |1800 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18011802warning: `extern` declarations without an explicit ABI are deprecated1803 --> ../src/ffi.rs:259:201804 |1805259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1806 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1807...1808355 | / gen_functions!(1809356 | | block_new_aa_trace,1810357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1811358 | | block_align_aa_trace,1812... |1813372 | | AAMatrix, AAProfile, true, false1814373 | | );1815 | |_- in this macro invocation1816 |1817 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18181819warning: `extern` declarations without an explicit ABI are deprecated1820 --> ../src/ffi.rs:270:201821 |1822270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1823 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1824...1825355 | / gen_functions!(1826356 | | block_new_aa_trace,1827357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1828358 | | block_align_aa_trace,1829... |1830372 | | AAMatrix, AAProfile, true, false1831373 | | );1832 | |_- in this macro invocation1833 |1834 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18351836warning: `extern` declarations without an explicit ABI are deprecated1837 --> ../src/ffi.rs:288:201838 |1839288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1840 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1841...1842355 | / gen_functions!(1843356 | | block_new_aa_trace,1844357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1845358 | | block_align_aa_trace,1846... |1847372 | | AAMatrix, AAProfile, true, false1848373 | | );1849 | |_- in this macro invocation1850 |1851 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18521853warning: `extern` declarations without an explicit ABI are deprecated1854 --> ../src/ffi.rs:295:201855 |1856295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1857 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1858...1859355 | / gen_functions!(1860356 | | block_new_aa_trace,1861357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1862358 | | block_align_aa_trace,1863... |1864372 | | AAMatrix, AAProfile, true, false1865373 | | );1866 | |_- in this macro invocation1867 |1868 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18691870warning: `extern` declarations without an explicit ABI are deprecated1871 --> ../src/ffi.rs:302:201872 |1873302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1874 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1875...1876355 | / gen_functions!(1877356 | | block_new_aa_trace,1878357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1879358 | | block_align_aa_trace,1880... |1881372 | | AAMatrix, AAProfile, true, false1882373 | | );1883 | |_- in this macro invocation1884 |1885 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18861887warning: `extern` declarations without an explicit ABI are deprecated1888 --> ../src/ffi.rs:309:201889 |1890309 | pub unsafe extern fn $free_name(b: BlockHandle) {1891 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1892...1893355 | / gen_functions!(1894356 | | block_new_aa_trace,1895357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1896358 | | block_align_aa_trace,1897... |1898372 | | AAMatrix, AAProfile, true, false1899373 | | );1900 | |_- in this macro invocation1901 |1902 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19031904warning: `extern` declarations without an explicit ABI are deprecated1905 --> ../src/ffi.rs:237:201906 |1907237 | pub unsafe extern fn $new_name(query_len: usize,1908 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1909...1910375 | / gen_functions!(1911376 | | block_new_aa_trace_xdrop,1912377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1913378 | | block_align_aa_trace_xdrop,1914... |1915392 | | AAMatrix, AAProfile, true, true1916393 | | );1917 | |_- in this macro invocation1918 |1919 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19201921warning: `extern` declarations without an explicit ABI are deprecated1922 --> ../src/ffi.rs:246:201923 |1924246 | pub unsafe extern fn $align_name(b: BlockHandle,1925 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1926...1927375 | / gen_functions!(1928376 | | block_new_aa_trace_xdrop,1929377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1930378 | | block_align_aa_trace_xdrop,1931... |1932392 | | AAMatrix, AAProfile, true, true1933393 | | );1934 | |_- in this macro invocation1935 |1936 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19371938warning: `extern` declarations without an explicit ABI are deprecated1939 --> ../src/ffi.rs:259:201940 |1941259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1942 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1943...1944375 | / gen_functions!(1945376 | | block_new_aa_trace_xdrop,1946377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1947378 | | block_align_aa_trace_xdrop,1948... |1949392 | | AAMatrix, AAProfile, true, true1950393 | | );1951 | |_- in this macro invocation1952 |1953 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19541955warning: `extern` declarations without an explicit ABI are deprecated1956 --> ../src/ffi.rs:270:201957 |1958270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1959 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1960...1961375 | / gen_functions!(1962376 | | block_new_aa_trace_xdrop,1963377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1964378 | | block_align_aa_trace_xdrop,1965... |1966392 | | AAMatrix, AAProfile, true, true1967393 | | );1968 | |_- in this macro invocation1969 |1970 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19711972warning: `extern` declarations without an explicit ABI are deprecated1973 --> ../src/ffi.rs:288:201974 |1975288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1976 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1977...1978375 | / gen_functions!(1979376 | | block_new_aa_trace_xdrop,1980377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1981378 | | block_align_aa_trace_xdrop,1982... |1983392 | | AAMatrix, AAProfile, true, true1984393 | | );1985 | |_- in this macro invocation1986 |1987 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19881989warning: `extern` declarations without an explicit ABI are deprecated1990 --> ../src/ffi.rs:295:201991 |1992295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1993 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1994...1995375 | / gen_functions!(1996376 | | block_new_aa_trace_xdrop,1997377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1998378 | | block_align_aa_trace_xdrop,1999... |2000392 | | AAMatrix, AAProfile, true, true2001393 | | );2002 | |_- in this macro invocation2003 |2004 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)20052006warning: `extern` declarations without an explicit ABI are deprecated2007 --> ../src/ffi.rs:302:202008 |2009302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...2010 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`2011...2012375 | / gen_functions!(2013376 | | block_new_aa_trace_xdrop,2014377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",2015378 | | block_align_aa_trace_xdrop,2016... |2017392 | | AAMatrix, AAProfile, true, true2018393 | | );2019 | |_- in this macro invocation2020 |2021 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)20222023warning: `extern` declarations without an explicit ABI are deprecated2024 --> ../src/ffi.rs:309:202025 |2026309 | pub unsafe extern fn $free_name(b: BlockHandle) {2027 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`2028...2029375 | / gen_functions!(2030376 | | block_new_aa_trace_xdrop,2031377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",2032378 | | block_align_aa_trace_xdrop,2033... |2034392 | | AAMatrix, AAProfile, true, true2035393 | | );2036 | |_- in this macro invocation2037 |2038 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)20392040warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions)2041 Finished `release` profile [optimized] target(s) in 0.00s2042Copying byproducts `libblock_aligner_c.a` to /build/source/build2043[ 37%] Built target gemmiwrapper2044[ 40%] Built target ggml-cpu2045[ 40%] Built target ggml2046[ 40%] Built target _cargo-build_block_aligner_c2047[ 40%] Built target cargo-build_block_aligner_c2048[ 42%] Built target llama2049[ 43%] Built target prostt52050[ 89%] Built target mmseqs-framework2051[ 89%] Built target pulchra2052[ 89%] Built target 3di2053[ 89%] Built target kerasify2054[ 90%] Built target tmalign2055[100%] Built target foldseek-framework2056[100%] Built target foldseek2057Install the project...2058-- Install configuration: "Release"2059-- Installing: /nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/bin/foldseekfixupPhase
2060shrinking RPATHs of ELF executables and libraries in /nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd332061shrinking /nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/bin/foldseek2062checking for references to /build/ in /nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33...2063patching script interpreter paths in /nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd332064stripping (with command strip and flags -S -p) in /nix/store/yb1y63v9cvw98r8sia1jh9l9hnzxsxdc-foldseek-10-941cd33/bin