python3.14-biotite-1.7.1
checks.x86_64-linux.pkgs-biotite
· build #95
· raw
1Sourcing python-remove-tests-dir-hook2Sourcing python-catch-conflicts-hook.sh3Sourcing python-remove-bin-bytecode-hook.sh4Sourcing pypa-build-hook5Using pypaBuildPhase6Sourcing python-runtime-deps-check-hook7Using pythonRuntimeDepsCheckHook8Sourcing pypa-install-hook9Using pypaInstallPhase10Sourcing python-imports-check-hook.sh11Using pythonImportsCheckPhase12Sourcing python-metadata-check-hook.sh13Using pythonMetadataCheckPhase14Sourcing python-namespaces-hook15Sourcing python-catch-conflicts-hook.sh16Sourcing setuptools-rust-hook17Using checkPhaseThreadLimitHook
unpackPhase
18unpacking source archive /nix/store/aa831ygkbmvxv42nkc86z3zqsk5hgkcb-source19source root is source20Executing cargoSetupPostUnpackHook21Finished cargoSetupPostUnpackHook22setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/util.py"patchPhase
23Executing cargoSetupPostPatchHook24Validating consistency between /build/source/Cargo.lock and /build/biotite-1.7.1-vendor-vendor/Cargo.lock25Finished cargoSetupPostPatchHookconfigurePhase
26no configure script, doing nothingbuildPhase
27Executing pypaBuildPhase28Including all tracked files automatically29Creating a wheel...30pypa build flags: --no-isolation --outdir dist/ --wheel31* Getting build dependencies for wheel...32/nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:483: SetuptoolsDeprecationWarning: Cannot find any files for the given pattern.33!!3435 ********************************************************************************36 Pattern 'THIRDPARTY.yml' did not match any files.3738 By 2027-Feb-18, you need to update your project and remove deprecated calls39 or your builds will no longer be supported.40 ********************************************************************************4142!!43 for path in sorted(cls._find_pattern(pattern, enforce_match))44running egg_info45creating src/biotite.egg-info46writing src/biotite.egg-info/PKG-INFO47writing dependency_links to src/biotite.egg-info/dependency_links.txt48writing requirements to src/biotite.egg-info/requires.txt49writing top-level names to src/biotite.egg-info/top_level.txt50writing manifest file 'src/biotite.egg-info/SOURCES.txt'51/nix/store/30xdi6i9iza30gldpqsfpqpkbb336ycg-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.52 return get_active_overrides().subprocess_timeout53reading manifest file 'src/biotite.egg-info/SOURCES.txt'54reading manifest template 'MANIFEST.in'55warning: no files found matching 'src/biotite/structure/info/components.bcif'56adding license file 'LICENSE.rst'57writing manifest file 'src/biotite.egg-info/SOURCES.txt'58* Building wheel...59[ 1/14] Cythonizing src/biotite/sequence/align/banded.pyx60[ 2/14] Cythonizing src/biotite/sequence/align/kmeralphabet.pyx61[ 3/14] Cythonizing src/biotite/sequence/align/kmersimilarity.pyx62[ 4/14] Cythonizing src/biotite/sequence/align/kmertable.pyx63[ 5/14] Cythonizing src/biotite/sequence/align/localgapped.pyx64[ 6/14] Cythonizing src/biotite/sequence/align/localungapped.pyx65performance hint: src/biotite/sequence/align/localungapped.pyx:202:37: Index should be typed for more efficient access66performance hint: src/biotite/sequence/align/localungapped.pyx:202:56: Index should be typed for more efficient access67[ 7/14] Cythonizing src/biotite/sequence/align/multiple.pyx68[ 8/14] Cythonizing src/biotite/sequence/align/pairwise.pyx69[ 9/14] Cythonizing src/biotite/sequence/align/permutation.pyx70[10/14] Cythonizing src/biotite/sequence/align/selector.pyx71[11/14] Cythonizing src/biotite/sequence/align/tracetable.pyx72[12/14] Cythonizing src/biotite/sequence/phylo/nj.pyx73[13/14] Cythonizing src/biotite/sequence/phylo/tree.pyx74[14/14] Cythonizing src/biotite/sequence/phylo/upgma.pyx75/nix/store/fiwq290ghcn0zx89nkqvjfi5a0g5nd13-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:483: SetuptoolsDeprecationWarning: Cannot find any files for the given pattern.76!!7778 ********************************************************************************79 Pattern 'THIRDPARTY.yml' did not match any files.8081 By 2027-Feb-18, you need to update your project and remove deprecated calls82 or your builds will no longer be supported.83 ********************************************************************************8485!!86 for path in sorted(cls._find_pattern(pattern, enforce_match))87running bdist_wheel88running build89running build_py90creating build/lib.linux-x86_64-cpython-314/biotite91copying src/biotite/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite92copying src/biotite/copyable.py -> build/lib.linux-x86_64-cpython-314/biotite93copying src/biotite/file.py -> build/lib.linux-x86_64-cpython-314/biotite94copying src/biotite/setup_ccd.py -> build/lib.linux-x86_64-cpython-314/biotite95copying src/biotite/typing.py -> build/lib.linux-x86_64-cpython-314/biotite96copying src/biotite/visualize.py -> build/lib.linux-x86_64-cpython-314/biotite97copying src/biotite/version.py -> build/lib.linux-x86_64-cpython-314/biotite98creating build/lib.linux-x86_64-cpython-314/biotite/structure99copying src/biotite/structure/superimpose.py -> build/lib.linux-x86_64-cpython-314/biotite/structure100copying src/biotite/structure/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure101copying src/biotite/structure/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure102copying src/biotite/structure/basepairs.py -> build/lib.linux-x86_64-cpython-314/biotite/structure103copying src/biotite/structure/bonds.py -> build/lib.linux-x86_64-cpython-314/biotite/structure104copying src/biotite/structure/box.py -> build/lib.linux-x86_64-cpython-314/biotite/structure105copying src/biotite/structure/celllist.py -> build/lib.linux-x86_64-cpython-314/biotite/structure106copying src/biotite/structure/chains.py -> build/lib.linux-x86_64-cpython-314/biotite/structure107copying src/biotite/structure/charges.py -> build/lib.linux-x86_64-cpython-314/biotite/structure108copying src/biotite/structure/compare.py -> build/lib.linux-x86_64-cpython-314/biotite/structure109copying src/biotite/structure/connect.py -> build/lib.linux-x86_64-cpython-314/biotite/structure110copying src/biotite/structure/density.py -> build/lib.linux-x86_64-cpython-314/biotite/structure111copying src/biotite/structure/dotbracket.py -> build/lib.linux-x86_64-cpython-314/biotite/structure112copying src/biotite/structure/error.py -> build/lib.linux-x86_64-cpython-314/biotite/structure113copying src/biotite/structure/filter.py -> build/lib.linux-x86_64-cpython-314/biotite/structure114copying src/biotite/structure/geometry.py -> build/lib.linux-x86_64-cpython-314/biotite/structure115copying src/biotite/structure/hbond.py -> build/lib.linux-x86_64-cpython-314/biotite/structure116copying src/biotite/structure/integrity.py -> build/lib.linux-x86_64-cpython-314/biotite/structure117copying src/biotite/structure/mechanics.py -> build/lib.linux-x86_64-cpython-314/biotite/structure118copying src/biotite/structure/molecules.py -> build/lib.linux-x86_64-cpython-314/biotite/structure119copying src/biotite/structure/pseudoknots.py -> build/lib.linux-x86_64-cpython-314/biotite/structure120copying src/biotite/structure/rdf.py -> build/lib.linux-x86_64-cpython-314/biotite/structure121copying src/biotite/structure/repair.py -> build/lib.linux-x86_64-cpython-314/biotite/structure122copying src/biotite/structure/residues.py -> build/lib.linux-x86_64-cpython-314/biotite/structure123copying src/biotite/structure/rings.py -> build/lib.linux-x86_64-cpython-314/biotite/structure124copying src/biotite/structure/sasa.py -> build/lib.linux-x86_64-cpython-314/biotite/structure125copying src/biotite/structure/segments.py -> build/lib.linux-x86_64-cpython-314/biotite/structure126copying src/biotite/structure/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/structure127copying src/biotite/structure/sse.py -> build/lib.linux-x86_64-cpython-314/biotite/structure128copying src/biotite/structure/tm.py -> build/lib.linux-x86_64-cpython-314/biotite/structure129copying src/biotite/structure/transform.py -> build/lib.linux-x86_64-cpython-314/biotite/structure130copying src/biotite/structure/util.py -> build/lib.linux-x86_64-cpython-314/biotite/structure131creating build/lib.linux-x86_64-cpython-314/biotite/application132copying src/biotite/application/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application133copying src/biotite/application/application.py -> build/lib.linux-x86_64-cpython-314/biotite/application134copying src/biotite/application/localapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application135copying src/biotite/application/msaapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application136copying src/biotite/application/util.py -> build/lib.linux-x86_64-cpython-314/biotite/application137copying src/biotite/application/webapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application138creating build/lib.linux-x86_64-cpython-314/biotite/database139copying src/biotite/database/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database140copying src/biotite/database/error.py -> build/lib.linux-x86_64-cpython-314/biotite/database141creating build/lib.linux-x86_64-cpython-314/biotite/interface142copying src/biotite/interface/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface143copying src/biotite/interface/version.py -> build/lib.linux-x86_64-cpython-314/biotite/interface144copying src/biotite/interface/warning.py -> build/lib.linux-x86_64-cpython-314/biotite/interface145creating build/lib.linux-x86_64-cpython-314/biotite/sequence146copying src/biotite/sequence/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence147copying src/biotite/sequence/alphabet.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence148copying src/biotite/sequence/annotation.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence149copying src/biotite/sequence/codon.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence150copying src/biotite/sequence/profile.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence151copying src/biotite/sequence/search.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence152copying src/biotite/sequence/seqtypes.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence153copying src/biotite/sequence/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence154creating build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet155copying src/biotite/structure/alphabet/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet156copying src/biotite/structure/alphabet/encoder.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet157copying src/biotite/structure/alphabet/i3d.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet158copying src/biotite/structure/alphabet/layers.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet159copying src/biotite/structure/alphabet/pb.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet160copying src/biotite/structure/alphabet/unkerasify.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet161creating build/lib.linux-x86_64-cpython-314/biotite/structure/graphics162copying src/biotite/structure/graphics/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics163copying src/biotite/structure/graphics/rna.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics164copying src/biotite/structure/graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics165creating build/lib.linux-x86_64-cpython-314/biotite/structure/info166copying src/biotite/structure/info/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info167copying src/biotite/structure/info/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info168copying src/biotite/structure/info/bonds.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info169copying src/biotite/structure/info/ccd.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info170copying src/biotite/structure/info/groups.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info171copying src/biotite/structure/info/masses.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info172copying src/biotite/structure/info/misc.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info173copying src/biotite/structure/info/radii.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info174copying src/biotite/structure/info/standardize.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info175creating build/lib.linux-x86_64-cpython-314/biotite/structure/io176copying src/biotite/structure/io/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io177copying src/biotite/structure/io/general.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io178copying src/biotite/structure/io/trajfile.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io179copying src/biotite/structure/io/util.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io180creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd181copying src/biotite/structure/io/dcd/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd182copying src/biotite/structure/io/dcd/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd183creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro184copying src/biotite/structure/io/gro/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro185copying src/biotite/structure/io/gro/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro186creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol187copying src/biotite/structure/io/mol/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol188copying src/biotite/structure/io/mol/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol189copying src/biotite/structure/io/mol/ctab.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol190copying src/biotite/structure/io/mol/header.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol191copying src/biotite/structure/io/mol/mol.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol192copying src/biotite/structure/io/mol/sdf.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol193creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf194copying src/biotite/structure/io/netcdf/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf195copying src/biotite/structure/io/netcdf/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf196creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb197copying src/biotite/structure/io/pdb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb198copying src/biotite/structure/io/pdb/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb199copying src/biotite/structure/io/pdb/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb200creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt201copying src/biotite/structure/io/pdbqt/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt202copying src/biotite/structure/io/pdbqt/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt203copying src/biotite/structure/io/pdbqt/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt204creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx205copying src/biotite/structure/io/pdbx/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx206copying src/biotite/structure/io/pdbx/bcif.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx207copying src/biotite/structure/io/pdbx/cif.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx208copying src/biotite/structure/io/pdbx/component.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx209copying src/biotite/structure/io/pdbx/compress.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx210copying src/biotite/structure/io/pdbx/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx211copying src/biotite/structure/io/pdbx/encoding.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx212creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr213copying src/biotite/structure/io/trr/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr214copying src/biotite/structure/io/trr/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr215creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc216copying src/biotite/structure/io/xtc/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc217copying src/biotite/structure/io/xtc/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc218creating build/lib.linux-x86_64-cpython-314/biotite/application/autodock219copying src/biotite/application/autodock/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/autodock220copying src/biotite/application/autodock/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/autodock221creating build/lib.linux-x86_64-cpython-314/biotite/application/blast222copying src/biotite/application/blast/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast223copying src/biotite/application/blast/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast224copying src/biotite/application/blast/webapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast225creating build/lib.linux-x86_64-cpython-314/biotite/application/clustalo226copying src/biotite/application/clustalo/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/clustalo227copying src/biotite/application/clustalo/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/clustalo228creating build/lib.linux-x86_64-cpython-314/biotite/application/dssp229copying src/biotite/application/dssp/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/dssp230copying src/biotite/application/dssp/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/dssp231creating build/lib.linux-x86_64-cpython-314/biotite/application/mafft232copying src/biotite/application/mafft/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/mafft233copying src/biotite/application/mafft/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/mafft234creating build/lib.linux-x86_64-cpython-314/biotite/application/muscle235copying src/biotite/application/muscle/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle236copying src/biotite/application/muscle/app3.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle237copying src/biotite/application/muscle/app5.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle238creating build/lib.linux-x86_64-cpython-314/biotite/application/sra239copying src/biotite/application/sra/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/sra240copying src/biotite/application/sra/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/sra241creating build/lib.linux-x86_64-cpython-314/biotite/application/tantan242copying src/biotite/application/tantan/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/tantan243copying src/biotite/application/tantan/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/tantan244creating build/lib.linux-x86_64-cpython-314/biotite/application/viennarna245copying src/biotite/application/viennarna/rnaalifold.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna246copying src/biotite/application/viennarna/rnafold.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna247copying src/biotite/application/viennarna/rnaplot.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna248copying src/biotite/application/viennarna/util.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna249copying src/biotite/application/viennarna/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna250creating build/lib.linux-x86_64-cpython-314/biotite/database/afdb251copying src/biotite/database/afdb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/afdb252copying src/biotite/database/afdb/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/afdb253creating build/lib.linux-x86_64-cpython-314/biotite/database/entrez254copying src/biotite/database/entrez/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez255copying src/biotite/database/entrez/check.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez256copying src/biotite/database/entrez/dbnames.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez257copying src/biotite/database/entrez/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez258copying src/biotite/database/entrez/key.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez259copying src/biotite/database/entrez/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez260creating build/lib.linux-x86_64-cpython-314/biotite/database/pubchem261copying src/biotite/database/pubchem/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem262copying src/biotite/database/pubchem/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem263copying src/biotite/database/pubchem/error.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem264copying src/biotite/database/pubchem/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem265copying src/biotite/database/pubchem/throttle.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem266creating build/lib.linux-x86_64-cpython-314/biotite/database/rcsb267copying src/biotite/database/rcsb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb268copying src/biotite/database/rcsb/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb269copying src/biotite/database/rcsb/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb270creating build/lib.linux-x86_64-cpython-314/biotite/database/uniprot271copying src/biotite/database/uniprot/check.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot272copying src/biotite/database/uniprot/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot273copying src/biotite/database/uniprot/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot274copying src/biotite/database/uniprot/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot275creating build/lib.linux-x86_64-cpython-314/biotite/interface/openmm276copying src/biotite/interface/openmm/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm277copying src/biotite/interface/openmm/state.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm278copying src/biotite/interface/openmm/system.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm279creating build/lib.linux-x86_64-cpython-314/biotite/interface/pymol280copying src/biotite/interface/pymol/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol281copying src/biotite/interface/pymol/cgo.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol282copying src/biotite/interface/pymol/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol283copying src/biotite/interface/pymol/display.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol284copying src/biotite/interface/pymol/object.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol285copying src/biotite/interface/pymol/shapes.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol286copying src/biotite/interface/pymol/startup.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol287creating build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit288copying src/biotite/interface/rdkit/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit289copying src/biotite/interface/rdkit/mol.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit290creating build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo291copying src/biotite/sequence/phylo/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo292creating build/lib.linux-x86_64-cpython-314/biotite/sequence/align293copying src/biotite/sequence/align/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align294copying src/biotite/sequence/align/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align295copying src/biotite/sequence/align/buckets.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align296copying src/biotite/sequence/align/cigar.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align297copying src/biotite/sequence/align/matrix.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align298copying src/biotite/sequence/align/statistics.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align299creating build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics300copying src/biotite/sequence/graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics301copying src/biotite/sequence/graphics/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics302copying src/biotite/sequence/graphics/colorschemes.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics303copying src/biotite/sequence/graphics/dendrogram.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics304copying src/biotite/sequence/graphics/features.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics305copying src/biotite/sequence/graphics/logo.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics306copying src/biotite/sequence/graphics/plasmid.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics307creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io308copying src/biotite/sequence/io/general.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io309copying src/biotite/sequence/io/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io310creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank311copying src/biotite/sequence/io/genbank/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank312copying src/biotite/sequence/io/genbank/annotation.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank313copying src/biotite/sequence/io/genbank/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank314copying src/biotite/sequence/io/genbank/metadata.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank315copying src/biotite/sequence/io/genbank/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank316creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff317copying src/biotite/sequence/io/gff/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff318copying src/biotite/sequence/io/gff/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff319copying src/biotite/sequence/io/gff/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff320creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal321copying src/biotite/sequence/io/clustal/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal322copying src/biotite/sequence/io/clustal/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal323copying src/biotite/sequence/io/clustal/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal324creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta325copying src/biotite/sequence/io/fasta/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta326copying src/biotite/sequence/io/fasta/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta327copying src/biotite/sequence/io/fasta/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta328creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq329copying src/biotite/sequence/io/fastq/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq330copying src/biotite/sequence/io/fastq/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq331copying src/biotite/sequence/io/fastq/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq332running egg_info333writing src/biotite.egg-info/PKG-INFO334writing dependency_links to src/biotite.egg-info/dependency_links.txt335writing requirements to src/biotite.egg-info/requires.txt336writing top-level names to src/biotite.egg-info/top_level.txt337/nix/store/30xdi6i9iza30gldpqsfpqpkbb336ycg-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.338 return get_active_overrides().subprocess_timeout339reading manifest file 'src/biotite.egg-info/SOURCES.txt'340reading manifest template 'MANIFEST.in'341warning: no files found matching 'src/biotite/structure/info/components.bcif'342adding license file 'LICENSE.rst'343writing manifest file 'src/biotite.egg-info/SOURCES.txt'344creating build/lib.linux-x86_64-cpython-314/rust345copying src/rust/lib.rs -> build/lib.linux-x86_64-cpython-314/rust346copying src/rust/util.rs -> build/lib.linux-x86_64-cpython-314/rust347copying src/biotite/py.typed -> build/lib.linux-x86_64-cpython-314/biotite348creating build/lib.linux-x86_64-cpython-314/rust/sequence349copying src/rust/sequence/codec.rs -> build/lib.linux-x86_64-cpython-314/rust/sequence350copying src/rust/sequence/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/sequence351creating build/lib.linux-x86_64-cpython-314/rust/structure352copying src/rust/structure/bonds.rs -> build/lib.linux-x86_64-cpython-314/rust/structure353copying src/rust/structure/celllist.rs -> build/lib.linux-x86_64-cpython-314/rust/structure354copying src/rust/structure/charges.rs -> build/lib.linux-x86_64-cpython-314/rust/structure355copying src/rust/structure/connect.rs -> build/lib.linux-x86_64-cpython-314/rust/structure356copying src/rust/structure/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure357copying src/rust/structure/sasa.rs -> build/lib.linux-x86_64-cpython-314/rust/structure358copying src/rust/structure/util.rs -> build/lib.linux-x86_64-cpython-314/rust/structure359creating build/lib.linux-x86_64-cpython-314/rust/structure/io360copying src/rust/structure/io/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io361creating build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb362copying src/rust/structure/io/pdb/file.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb363copying src/rust/structure/io/pdb/hybrid36.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb364copying src/rust/structure/io/pdb/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb365creating build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx366copying src/rust/structure/io/pdbx/encoding.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx367copying src/rust/structure/io/pdbx/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx368copying src/biotite/structure/atoms.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure369copying src/biotite/structure/bonds.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure370copying src/biotite/structure/celllist.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure371copying src/biotite/structure/spacegroups.json -> build/lib.linux-x86_64-cpython-314/biotite/structure372copying src/biotite/structure/spacegroups.license -> build/lib.linux-x86_64-cpython-314/biotite/structure373copying src/biotite/sequence/codon_tables.txt -> build/lib.linux-x86_64-cpython-314/biotite/sequence374copying src/biotite/structure/alphabet/encoder_weights_3di.kerasify -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet375copying src/biotite/structure/alphabet/pb.license -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet376copying src/biotite/structure/info/atom_masses.json -> build/lib.linux-x86_64-cpython-314/biotite/structure/info377copying src/biotite/sequence/phylo/nj.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo378copying src/biotite/sequence/phylo/nj.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo379copying src/biotite/sequence/phylo/nj.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo380copying src/biotite/sequence/phylo/tree.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo381copying src/biotite/sequence/phylo/tree.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo382copying src/biotite/sequence/phylo/tree.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo383copying src/biotite/sequence/phylo/upgma.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo384copying src/biotite/sequence/phylo/upgma.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo385copying src/biotite/sequence/phylo/upgma.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo386copying src/biotite/sequence/align/banded.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align387copying src/biotite/sequence/align/banded.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align388copying src/biotite/sequence/align/banded.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align389copying src/biotite/sequence/align/kmeralphabet.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align390copying src/biotite/sequence/align/kmeralphabet.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align391copying src/biotite/sequence/align/kmeralphabet.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align392copying src/biotite/sequence/align/kmersimilarity.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align393copying src/biotite/sequence/align/kmersimilarity.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align394copying src/biotite/sequence/align/kmersimilarity.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align395copying src/biotite/sequence/align/kmertable.cpp -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align396copying src/biotite/sequence/align/kmertable.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align397copying src/biotite/sequence/align/kmertable.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align398copying src/biotite/sequence/align/localgapped.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align399copying src/biotite/sequence/align/localgapped.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align400copying src/biotite/sequence/align/localgapped.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align401copying src/biotite/sequence/align/localungapped.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align402copying src/biotite/sequence/align/localungapped.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align403copying src/biotite/sequence/align/localungapped.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align404copying src/biotite/sequence/align/multiple.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align405copying src/biotite/sequence/align/multiple.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align406copying src/biotite/sequence/align/multiple.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align407copying src/biotite/sequence/align/pairwise.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align408copying src/biotite/sequence/align/pairwise.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align409copying src/biotite/sequence/align/pairwise.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align410copying src/biotite/sequence/align/permutation.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align411copying src/biotite/sequence/align/permutation.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align412copying src/biotite/sequence/align/permutation.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align413copying src/biotite/sequence/align/primes.txt -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align414copying src/biotite/sequence/align/selector.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align415copying src/biotite/sequence/align/selector.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align416copying src/biotite/sequence/align/selector.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align417copying src/biotite/sequence/align/tracetable.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align418copying src/biotite/sequence/align/tracetable.pxd -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align419copying src/biotite/sequence/align/tracetable.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align420creating build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data421copying src/biotite/sequence/align/matrix_data/3Di.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data422copying src/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data423copying src/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data424copying src/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data425copying src/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data426copying src/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data427copying src/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data428copying src/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data429copying src/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data430copying src/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data431copying src/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data432copying src/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data433copying src/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data434copying src/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data435copying src/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data436copying src/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data437copying src/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data438copying src/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data439copying src/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data440copying src/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data441copying src/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data442copying src/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data443copying src/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data444copying src/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data445copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data446copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data447copying src/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data448copying src/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data449copying src/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data450copying src/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data451copying src/biotite/sequence/align/matrix_data/GONNET.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data452copying src/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data453copying src/biotite/sequence/align/matrix_data/MATCH.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data454copying src/biotite/sequence/align/matrix_data/NUC.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data455copying src/biotite/sequence/align/matrix_data/PAM10.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data456copying src/biotite/sequence/align/matrix_data/PAM100.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data457copying src/biotite/sequence/align/matrix_data/PAM110.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data458copying src/biotite/sequence/align/matrix_data/PAM120.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data459copying src/biotite/sequence/align/matrix_data/PAM130.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data460copying src/biotite/sequence/align/matrix_data/PAM140.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data461copying src/biotite/sequence/align/matrix_data/PAM150.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data462copying src/biotite/sequence/align/matrix_data/PAM160.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data463copying src/biotite/sequence/align/matrix_data/PAM170.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data464copying src/biotite/sequence/align/matrix_data/PAM180.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data465copying src/biotite/sequence/align/matrix_data/PAM190.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data466copying src/biotite/sequence/align/matrix_data/PAM20.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data467copying src/biotite/sequence/align/matrix_data/PAM200.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data468copying src/biotite/sequence/align/matrix_data/PAM210.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data469copying src/biotite/sequence/align/matrix_data/PAM220.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data470copying src/biotite/sequence/align/matrix_data/PAM230.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data471copying src/biotite/sequence/align/matrix_data/PAM240.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data472copying src/biotite/sequence/align/matrix_data/PAM250.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data473copying src/biotite/sequence/align/matrix_data/PAM260.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data474copying src/biotite/sequence/align/matrix_data/PAM270.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data475copying src/biotite/sequence/align/matrix_data/PAM280.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data476copying src/biotite/sequence/align/matrix_data/PAM290.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data477copying src/biotite/sequence/align/matrix_data/PAM30.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data478copying src/biotite/sequence/align/matrix_data/PAM300.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data479copying src/biotite/sequence/align/matrix_data/PAM310.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data480copying src/biotite/sequence/align/matrix_data/PAM320.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data481copying src/biotite/sequence/align/matrix_data/PAM330.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data482copying src/biotite/sequence/align/matrix_data/PAM340.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data483copying src/biotite/sequence/align/matrix_data/PAM350.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data484copying src/biotite/sequence/align/matrix_data/PAM360.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data485copying src/biotite/sequence/align/matrix_data/PAM370.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data486copying src/biotite/sequence/align/matrix_data/PAM380.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data487copying src/biotite/sequence/align/matrix_data/PAM390.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data488copying src/biotite/sequence/align/matrix_data/PAM40.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data489copying src/biotite/sequence/align/matrix_data/PAM400.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data490copying src/biotite/sequence/align/matrix_data/PAM410.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data491copying src/biotite/sequence/align/matrix_data/PAM420.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data492copying src/biotite/sequence/align/matrix_data/PAM430.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data493copying src/biotite/sequence/align/matrix_data/PAM440.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data494copying src/biotite/sequence/align/matrix_data/PAM450.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data495copying src/biotite/sequence/align/matrix_data/PAM460.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data496copying src/biotite/sequence/align/matrix_data/PAM470.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data497copying src/biotite/sequence/align/matrix_data/PAM480.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data498copying src/biotite/sequence/align/matrix_data/PAM490.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data499copying src/biotite/sequence/align/matrix_data/PAM50.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data500copying src/biotite/sequence/align/matrix_data/PAM500.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data501copying src/biotite/sequence/align/matrix_data/PAM60.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data502copying src/biotite/sequence/align/matrix_data/PAM70.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data503copying src/biotite/sequence/align/matrix_data/PAM80.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data504copying src/biotite/sequence/align/matrix_data/PAM90.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data505copying src/biotite/sequence/align/matrix_data/PB.license -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data506copying src/biotite/sequence/align/matrix_data/PB.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data507copying src/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data508copying src/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data509copying src/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data510copying src/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data511copying src/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data512copying src/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data513creating build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes514copying src/biotite/sequence/graphics/color_schemes/3di_flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes515copying src/biotite/sequence/graphics/color_schemes/autumn.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes516copying src/biotite/sequence/graphics/color_schemes/blossom.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes517copying src/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes518copying src/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes519copying src/biotite/sequence/graphics/color_schemes/flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes520copying src/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes521copying src/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes522copying src/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes523copying src/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes524copying src/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes525copying src/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes526copying src/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes527copying src/biotite/sequence/graphics/color_schemes/ocean.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes528copying src/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes529copying src/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes530copying src/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes531copying src/biotite/sequence/graphics/color_schemes/spring.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes532copying src/biotite/sequence/graphics/color_schemes/sunset.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes533copying src/biotite/sequence/graphics/color_schemes/wither.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes534running build_ext535building 'biotite.sequence.align.banded' extension536creating build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align537gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/banded.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/banded.o538gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/banded.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so539building 'biotite.sequence.align.kmeralphabet' extension540gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmeralphabet.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmeralphabet.o541gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmeralphabet.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so542building 'biotite.sequence.align.kmersimilarity' extension543gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmersimilarity.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmersimilarity.o544gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmersimilarity.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so545building 'biotite.sequence.align.kmertable' extension546g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmertable.cpp -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmertable.o547g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmertable.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so548building 'biotite.sequence.align.localgapped' extension549gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/localgapped.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localgapped.o550gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localgapped.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so551building 'biotite.sequence.align.localungapped' extension552gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/localungapped.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localungapped.o553gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localungapped.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so554building 'biotite.sequence.align.multiple' extension555gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/multiple.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/multiple.o556gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/multiple.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so557building 'biotite.sequence.align.pairwise' extension558gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/pairwise.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/pairwise.o559gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/pairwise.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so560building 'biotite.sequence.align.permutation' extension561gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/permutation.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/permutation.o562gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/permutation.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so563building 'biotite.sequence.align.selector' extension564gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/selector.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/selector.o565gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/selector.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so566building 'biotite.sequence.align.tracetable' extension567gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/tracetable.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/tracetable.o568gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/tracetable.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so569building 'biotite.sequence.phylo.nj' extension570creating build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo571gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/nj.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/nj.o572gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/nj.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so573building 'biotite.sequence.phylo.tree' extension574gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/tree.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/tree.o575gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/tree.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so576building 'biotite.sequence.phylo.upgma' extension577gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/5w5s4965dcmmi5z8mwh8y786gh8gdixp-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/upgma.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/upgma.o578gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.5.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/n8fqcpnr5ni28l3i9svqa70wz46798v9-tzdata-2026d/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/upgma.o -L/nix/store/lb41b0anx1f98y9y5s9mdv97gjgsq740-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so579running build_rust580cargo rustc --lib --message-format=json-render-diagnostics --manifest-path Cargo.toml --release -v --features pyo3/extension-module --crate-type cdylib --target x86_64-unknown-linux-gnu581warning: failed to save last-use data582This may prevent cargo from accurately tracking what is being used in its global cache. This information is used for automatically removing unused data in the cache.583584unable to open database file: /homeless-shelter/.cargo/.global-cache585586Caused by:587 Error code 14: unable to open database file588 Compiling target-lexicon v0.13.5589 Compiling autocfg v1.5.1590 Compiling proc-macro2 v1.0.107591 Compiling quote v1.0.47592 Compiling unicode-ident v1.0.26593 Compiling libc v0.2.190594 Compiling heck v0.5.0595 Compiling rawpointer v0.2.1596 Compiling indoc v2.0.7597 Compiling unindent v0.2.4598 Compiling once_cell v1.21.4599 Compiling rustc-hash v2.1.3600 Compiling either v1.18.0601 Compiling smallvec v1.16.2602 Running `rustc --crate-name autocfg --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/autocfg-1.5.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=a42ff67ea1ecf2ea -C extra-filename=-283989c93de178b9 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`603 Running `rustc --crate-name build_script_build --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=unexpected_cfgs --check-cfg 'cfg(feature, values("rust_1_40", "cargo-clippy"))' -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arch_z80", "arch_zkasm", "default", "serde", "serde_support", "std"))' -C metadata=4db800290b3f50af -C extra-filename=-1923f9b508cf29c4 --out-dir /build/source/target/release/build/target-lexicon-1923f9b508cf29c4 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`604 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=b4a19042bc764ac7 -C extra-filename=-a1748a63e9060e7c --out-dir /build/source/target/release/build/proc-macro2-a1748a63e9060e7c -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`605 Running `rustc --crate-name unicode_ident --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/unicode-ident-1.0.26/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=4b8652dd670bd1a6 -C extra-filename=-c74e3b88548992d2 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`606 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "proc-macro"))' -C metadata=e50c7694f3d21d8b -C extra-filename=-6ace72b374b83c14 --out-dir /build/source/target/release/build/quote-6ace72b374b83c14 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`607 Running `rustc --crate-name heck --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/heck-0.5.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=4a8eb68e89253af7 -C extra-filename=-5aefe23acf6837b5 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`608 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.190/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --allow=unused_qualifications '--warn=clippy::unnecessary_semicolon' '--allow=clippy::unnecessary_cast' '--warn=clippy::ptr_as_ptr' '--allow=clippy::non_minimal_cfg' '--allow=clippy::missing_safety_doc' '--warn=clippy::map_unwrap_or' '--warn=clippy::manual_assert' '--allow=clippy::identity_op' '--warn=clippy::explicit_iter_loop' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=9294fd1e8596453a -C extra-filename=-69b4ca091671c4fa --out-dir /build/source/target/release/build/libc-69b4ca091671c4fa -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`609 Running `rustc --crate-name rawpointer --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/rawpointer-0.2.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=0b5fdcbd0a0a82ae -C extra-filename=-321647f79fda5009 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`610 Running `rustc --crate-name indoc --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/indoc-2.0.7/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=9b21a8c3e90023e8 -C extra-filename=-2619e51e066ea75a --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro --cap-lints allow`611 Running `rustc --crate-name unindent --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/unindent-0.2.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=a8a9c0797fd4a61c -C extra-filename=-bb0db7ca4bb55f80 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`612 Running `rustc --crate-name once_cell --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/once_cell-1.21.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="alloc"' --cfg 'feature="default"' --cfg 'feature="race"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc", "atomic-polyfill", "critical-section", "default", "parking_lot", "portable-atomic", "race", "std", "unstable"))' -C metadata=e904420e246bdd05 -C extra-filename=-d2de14c4caf3215f --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`613 Running `rustc --crate-name rustc_hash --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/rustc-hash-2.1.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "rand", "std"))' -C metadata=ff3c32daa1e583cd -C extra-filename=-8009794313d47b81 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`614 Running `rustc --crate-name either --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/either-1.18.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="std"' --cfg 'feature="use_std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "serde", "std", "use_std"))' -C metadata=d5457cca23161e2d -C extra-filename=-1ba43553c129993f --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`615 Running `rustc --crate-name smallvec --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/smallvec-1.16.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arbitrary", "bincode", "const_generics", "const_new", "drain_filter", "drain_keep_rest", "impl_bincode", "malloc_size_of", "may_dangle", "serde", "specialization", "union", "unty", "write"))' -C metadata=1120a3c6cf649104 -C extra-filename=-ae0eb1e0faa58575 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`616 Compiling itertools v0.14.0617 Running `rustc --crate-name itertools --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/itertools-0.14.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="use_alloc"' --cfg 'feature="use_std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "use_alloc", "use_std"))' -C metadata=51ee26b97db92670 -C extra-filename=-42433dbef26eed58 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern either=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libeither-1ba43553c129993f.rmeta --cap-lints allow -Cforce-frame-pointers=yes`618 Running `/build/source/target/release/build/quote-6ace72b374b83c14/build-script-build`619 Compiling num-traits v0.2.19620 Compiling matrixmultiply v0.3.11621 Compiling memoffset v0.9.1622 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="i128"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "libm", "std"))' -C metadata=8b0f568c5c8337ef -C extra-filename=-0381f4606dff5f8d --out-dir /build/source/target/release/build/num-traits-0381f4606dff5f8d -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-283989c93de178b9.rlib --cap-lints allow`623 Running `rustc --crate-name build_script_build --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="cgemm"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("avx512", "cgemm", "constconf", "default", "num_cpus", "once_cell", "std", "thread-tree", "threading"))' -C metadata=d2085a0b7c357024 -C extra-filename=-a28e0125945846e2 --out-dir /build/source/target/release/build/matrixmultiply-a28e0125945846e2 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-283989c93de178b9.rlib --cap-lints allow`624 Running `rustc --crate-name build_script_build --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "unstable_const", "unstable_offset_of"))' -C metadata=58b2679c10c09029 -C extra-filename=-39de7929a8b4be42 --out-dir /build/source/target/release/build/memoffset-39de7929a8b4be42 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-283989c93de178b9.rlib --cap-lints allow`625 Running `/build/source/target/release/build/proc-macro2-a1748a63e9060e7c/build-script-build`626 Running `/build/source/target/release/build/libc-69b4ca091671c4fa/build-script-build`627 Running `rustc --crate-name libc --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.190/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --allow=unused_qualifications '--warn=clippy::unnecessary_semicolon' '--allow=clippy::unnecessary_cast' '--warn=clippy::ptr_as_ptr' '--allow=clippy::non_minimal_cfg' '--allow=clippy::missing_safety_doc' '--warn=clippy::map_unwrap_or' '--warn=clippy::manual_assert' '--allow=clippy::identity_op' '--warn=clippy::explicit_iter_loop' --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=b8c6aec14657f578 -C extra-filename=-6fd2d4b04c9b8ef8 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg linux_time_bits64 --check-cfg 'cfg(libc_deny_warnings)' --check-cfg 'cfg(emscripten_old_stat_abi)' --check-cfg 'cfg(espidf_picolibc)' --check-cfg 'cfg(espidf_time32)' --check-cfg 'cfg(freebsd10)' --check-cfg 'cfg(freebsd11)' --check-cfg 'cfg(freebsd12)' --check-cfg 'cfg(freebsd13)' --check-cfg 'cfg(freebsd14)' --check-cfg 'cfg(freebsd15)' --check-cfg 'cfg(libc_elfv2)' --check-cfg 'cfg(vxworks_lt_25_09)' --check-cfg 'cfg(libc_pauthtest)' --check-cfg 'cfg(gnu_file_offset_bits64)' --check-cfg 'cfg(gnu_time_bits64)' --check-cfg 'cfg(linux_time_bits64)' --check-cfg 'cfg(musl_v1_2)' --check-cfg 'cfg(musl32_time64)' --check-cfg 'cfg(musl_redir_time64)' --check-cfg 'cfg(uclibc32_time64)' --check-cfg 'cfg(target_os,values("switch","aix","ohos","hurd","rtems","visionos","nuttx","cygwin","qurt","qnx","helenos"))' --check-cfg 'cfg(target_env,values("illumos","wasi","aix","ohos","nto71_iosock"))' --check-cfg 'cfg(target_arch,values("loongarch64","mips32r6","mips64r6","csky"))'`628 Running `/build/source/target/release/build/memoffset-39de7929a8b4be42/build-script-build`629 Running `/build/source/target/release/build/num-traits-0381f4606dff5f8d/build-script-build`630 Running `/build/source/target/release/build/matrixmultiply-a28e0125945846e2/build-script-build`631 Running `rustc --crate-name proc_macro2 --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=0e32cf32e1c735d5 -C extra-filename=-82ae911c3ba39528 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern unicode_ident=/build/source/target/release/deps/libunicode_ident-c74e3b88548992d2.rmeta --cap-lints allow --cfg wrap_proc_macro --cfg proc_macro_span_location --cfg proc_macro_span_file --check-cfg 'cfg(fuzzing)' --check-cfg 'cfg(no_is_available)' --check-cfg 'cfg(no_literal_byte_character)' --check-cfg 'cfg(no_literal_c_string)' --check-cfg 'cfg(no_source_text)' --check-cfg 'cfg(proc_macro_span)' --check-cfg 'cfg(proc_macro_span_file)' --check-cfg 'cfg(proc_macro_span_location)' --check-cfg 'cfg(procmacro2_backtrace)' --check-cfg 'cfg(procmacro2_build_probe)' --check-cfg 'cfg(procmacro2_nightly_testing)' --check-cfg 'cfg(procmacro2_semver_exempt)' --check-cfg 'cfg(randomize_layout)' --check-cfg 'cfg(span_locations)' --check-cfg 'cfg(super_unstable)' --check-cfg 'cfg(wrap_proc_macro)'`632 Running `/build/source/target/release/build/target-lexicon-1923f9b508cf29c4/build-script-build`633 Running `rustc --crate-name target_lexicon --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=unexpected_cfgs --check-cfg 'cfg(feature, values("rust_1_40", "cargo-clippy"))' -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arch_z80", "arch_zkasm", "default", "serde", "serde_support", "std"))' -C metadata=e86912aead1355de -C extra-filename=-08a28daeac073f90 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow --cfg 'feature="rust_1_40"'`634 Running `rustc --crate-name memoffset --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "unstable_const", "unstable_offset_of"))' -C metadata=3f444290d0519a55 -C extra-filename=-0c893d786b000fba --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg tuple_ty --cfg allow_clippy --cfg maybe_uninit --cfg doctests --cfg raw_ref_macros --cfg stable_const --cfg stable_offset_of`635 Running `rustc --crate-name matrixmultiply --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="cgemm"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("avx512", "cgemm", "constconf", "default", "num_cpus", "once_cell", "std", "thread-tree", "threading"))' -C metadata=726dc4308008e1c6 -C extra-filename=-9358e6ac248b2823 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern rawpointer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librawpointer-321647f79fda5009.rmeta --cap-lints allow -Cforce-frame-pointers=yes --check-cfg 'cfg(has_avx512)'`636 Running `rustc --crate-name num_traits --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="i128"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "libm", "std"))' -C metadata=8642df2c435d26ca -C extra-filename=-0895278af2705c68 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg has_total_cmp --check-cfg 'cfg(has_total_cmp)'`637 Compiling pyo3-build-config v0.27.2638 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="resolve-config"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib", "resolve-config"))' -C metadata=57a4121ac5839ff4 -C extra-filename=-44dfe99628b902d6 --out-dir /build/source/target/release/build/pyo3-build-config-44dfe99628b902d6 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern target_lexicon=/build/source/target/release/deps/libtarget_lexicon-08a28daeac073f90.rlib --cap-lints allow`639 Running `rustc --crate-name quote --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "proc-macro"))' -C metadata=d1f4e6caaa2f2e1f -C extra-filename=-130c0e8ce9dec1ff --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-82ae911c3ba39528.rmeta --cap-lints allow --check-cfg 'cfg(no_diagnostic_namespace)'`640 Compiling syn v2.0.119641 Running `rustc --crate-name syn --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/syn-2.0.119/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=7e78d6dbef47a99c -C extra-filename=-230d5172e6b75b2d --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-82ae911c3ba39528.rmeta --extern quote=/build/source/target/release/deps/libquote-130c0e8ce9dec1ff.rmeta --extern unicode_ident=/build/source/target/release/deps/libunicode_ident-c74e3b88548992d2.rmeta --cap-lints allow`642 Running `/build/source/target/release/build/pyo3-build-config-44dfe99628b902d6/build-script-build`643 Running `rustc --crate-name pyo3_build_config --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="resolve-config"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib", "resolve-config"))' -C metadata=79f8d6640738918c -C extra-filename=-1a86d8ca13f9c0d8 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern target_lexicon=/build/source/target/release/deps/libtarget_lexicon-08a28daeac073f90.rmeta --cap-lints allow`644 Compiling num-complex v0.4.6645 Compiling num-integer v0.1.47646 Running `rustc --crate-name num_complex --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-complex-0.4.6/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("bytecheck", "bytemuck", "default", "libm", "rand", "rkyv", "serde", "std"))' -C metadata=7d4e81b15547a676 -C extra-filename=-e503fc626abc55fb --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rmeta --cap-lints allow -Cforce-frame-pointers=yes`647 Running `rustc --crate-name num_integer --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-integer-0.1.47/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "std"))' -C metadata=da78310955af83ff -C extra-filename=-90b28fa43245104a --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rmeta --cap-lints allow -Cforce-frame-pointers=yes`648 Compiling pyo3-ffi v0.27.2649 Compiling pyo3-macros-backend v0.27.2650 Compiling pyo3 v0.27.2651 Compiling numpy v0.27.1652 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib"))' -C metadata=2cd0b3d22255d624 -C extra-filename=-87f7579efddd4333 --out-dir /build/source/target/release/build/pyo3-ffi-87f7579efddd4333 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rlib --cap-lints allow`653 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=b8b9079b505a116e -C extra-filename=-f6b6353518ce8715 --out-dir /build/source/target/release/build/pyo3-macros-backend-f6b6353518ce8715 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rlib --cap-lints allow`654 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="indoc"' --cfg 'feature="macros"' --cfg 'feature="pyo3-macros"' --cfg 'feature="unindent"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "anyhow", "arc_lock", "auto-initialize", "bigdecimal", "bytes", "chrono", "chrono-local", "chrono-tz", "default", "either", "experimental-async", "experimental-inspect", "extension-module", "eyre", "full", "generate-import-lib", "hashbrown", "indexmap", "indoc", "inventory", "jiff-02", "lock_api", "macros", "multiple-pymethods", "nightly", "num-bigint", "num-complex", "num-rational", "ordered-float", "parking_lot", "py-clone", "pyo3-macros", "rust_decimal", "serde", "smallvec", "time", "unindent", "uuid"))' -C metadata=de1c401902eda1ee -C extra-filename=-c07062a7e27d8381 --out-dir /build/source/target/release/build/pyo3-c07062a7e27d8381 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rlib --cap-lints allow`655 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no '--allow=clippy::needless-lifetimes' --deny=elided-lifetimes-in-paths -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("half", "nalgebra"))' -C metadata=f7f6da2f52f0dfbe -C extra-filename=-cc457513a32fffd2 --out-dir /build/source/target/release/build/numpy-cc457513a32fffd2 -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rlib --cap-lints allow`656 Compiling ndarray v0.17.2657 Running `rustc --crate-name ndarray --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/ndarray-0.17.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("approx", "blas", "default", "matrixmultiply-threading", "portable-atomic-critical-section", "rayon", "serde", "std"))' -C metadata=041257198ec0ca4e -C extra-filename=-717144b08148cdbf --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern matrixmultiply=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libmatrixmultiply-9358e6ac248b2823.rmeta --extern num_complex=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_complex-e503fc626abc55fb.rmeta --extern num_integer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_integer-90b28fa43245104a.rmeta --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rmeta --extern rawpointer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librawpointer-321647f79fda5009.rmeta --cap-lints allow -Cforce-frame-pointers=yes`658 Running `/build/source/target/release/build/pyo3-macros-backend-f6b6353518ce8715/build-script-build`659 Running `/build/source/target/release/build/numpy-cc457513a32fffd2/build-script-build`660 Running `/build/source/target/release/build/pyo3-ffi-87f7579efddd4333/build-script-build`661 Running `/build/source/target/release/build/pyo3-c07062a7e27d8381/build-script-build`662 Running `rustc --crate-name pyo3_ffi --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --cfg 'feature="default"' --cfg 'feature="extension-module"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib"))' -C metadata=7b310d33fd1cf842 -C extra-filename=-7c7607a619550a32 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-6fd2d4b04c9b8ef8.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`663 Running `rustc --crate-name pyo3_macros_backend --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=3ea599f34ba539ac -C extra-filename=-685453fc0f80c0e6 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern heck=/build/source/target/release/deps/libheck-5aefe23acf6837b5.rmeta --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-82ae911c3ba39528.rmeta --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rmeta --extern quote=/build/source/target/release/deps/libquote-130c0e8ce9dec1ff.rmeta --extern syn=/build/source/target/release/deps/libsyn-230d5172e6b75b2d.rmeta --cap-lints allow --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`664 Compiling pyo3-macros v0.27.2665 Running `rustc --crate-name pyo3_macros --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect", "multiple-pymethods"))' -C metadata=cd727d21317ff0a0 -C extra-filename=-cbf9c618afddff41 --out-dir /build/source/target/release/deps -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-82ae911c3ba39528.rlib --extern pyo3_macros_backend=/build/source/target/release/deps/libpyo3_macros_backend-685453fc0f80c0e6.rlib --extern quote=/build/source/target/release/deps/libquote-130c0e8ce9dec1ff.rlib --extern syn=/build/source/target/release/deps/libsyn-230d5172e6b75b2d.rlib --extern proc_macro --cap-lints allow`666 Running `rustc --crate-name pyo3 --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="indoc"' --cfg 'feature="macros"' --cfg 'feature="pyo3-macros"' --cfg 'feature="unindent"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "anyhow", "arc_lock", "auto-initialize", "bigdecimal", "bytes", "chrono", "chrono-local", "chrono-tz", "default", "either", "experimental-async", "experimental-inspect", "extension-module", "eyre", "full", "generate-import-lib", "hashbrown", "indexmap", "indoc", "inventory", "jiff-02", "lock_api", "macros", "multiple-pymethods", "nightly", "num-bigint", "num-complex", "num-rational", "ordered-float", "parking_lot", "py-clone", "pyo3-macros", "rust_decimal", "serde", "smallvec", "time", "unindent", "uuid"))' -C metadata=0cda7c487c6fcd58 -C extra-filename=-c40ad565329a14e6 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern indoc=/build/source/target/release/deps/libindoc-2619e51e066ea75a.so --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-6fd2d4b04c9b8ef8.rmeta --extern memoffset=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libmemoffset-0c893d786b000fba.rmeta --extern once_cell=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libonce_cell-d2de14c4caf3215f.rmeta --extern pyo3_ffi=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3_ffi-7c7607a619550a32.rmeta --extern pyo3_macros=/build/source/target/release/deps/libpyo3_macros-cbf9c618afddff41.so --extern unindent=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libunindent-bb0db7ca4bb55f80.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`667 Running `rustc --crate-name numpy --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no '--allow=clippy::needless-lifetimes' --deny=elided-lifetimes-in-paths --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("half", "nalgebra"))' -C metadata=93497aefa4c6baf7 -C extra-filename=-6a7699dad1195919 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-6fd2d4b04c9b8ef8.rmeta --extern ndarray=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libndarray-717144b08148cdbf.rmeta --extern num_complex=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_complex-e503fc626abc55fb.rmeta --extern num_integer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_integer-90b28fa43245104a.rmeta --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rmeta --extern pyo3=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3-c40ad565329a14e6.rmeta --extern rustc_hash=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librustc_hash-8009794313d47b81.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)'`668 Compiling biotite_rust v0.0.0 (/build/source)669 Running `rustc --crate-name rust --edition=2018 src/rust/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type cdylib --emit=dep-info,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=169b530a7373ffed --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/j1938gsbvbhkyz4kbmvjk56r479mkw3s-gcc-wrapper-16.2.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern itertools=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libitertools-42433dbef26eed58.rlib --extern ndarray=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libndarray-717144b08148cdbf.rlib --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rlib --extern numpy=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnumpy-6a7699dad1195919.rlib --extern pyo3=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3-c40ad565329a14e6.rlib --extern smallvec=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libsmallvec-ae0eb1e0faa58575.rlib -Cforce-frame-pointers=yes`670 Finished `release` profile [optimized] target(s) in 14.69s671Copying rust artifact from target/x86_64-unknown-linux-gnu/release/librust.so to build/lib.linux-x86_64-cpython-314/biotite/rust.cpython-314-x86_64-linux-gnu.so672installing to build/bdist.linux-x86_64/wheel673running install674running install_lib675creating build/bdist.linux-x86_64/wheel676creating build/bdist.linux-x86_64/wheel/biotite677copying build/lib.linux-x86_64-cpython-314/biotite/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite678copying build/lib.linux-x86_64-cpython-314/biotite/copyable.py -> build/bdist.linux-x86_64/wheel/./biotite679copying build/lib.linux-x86_64-cpython-314/biotite/file.py -> build/bdist.linux-x86_64/wheel/./biotite680copying build/lib.linux-x86_64-cpython-314/biotite/setup_ccd.py -> build/bdist.linux-x86_64/wheel/./biotite681copying build/lib.linux-x86_64-cpython-314/biotite/typing.py -> build/bdist.linux-x86_64/wheel/./biotite682copying build/lib.linux-x86_64-cpython-314/biotite/visualize.py -> build/bdist.linux-x86_64/wheel/./biotite683copying build/lib.linux-x86_64-cpython-314/biotite/version.py -> build/bdist.linux-x86_64/wheel/./biotite684creating build/bdist.linux-x86_64/wheel/biotite/structure685copying build/lib.linux-x86_64-cpython-314/biotite/structure/superimpose.py -> build/bdist.linux-x86_64/wheel/./biotite/structure686copying build/lib.linux-x86_64-cpython-314/biotite/structure/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure687copying build/lib.linux-x86_64-cpython-314/biotite/structure/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure688copying build/lib.linux-x86_64-cpython-314/biotite/structure/basepairs.py -> build/bdist.linux-x86_64/wheel/./biotite/structure689copying build/lib.linux-x86_64-cpython-314/biotite/structure/bonds.py -> build/bdist.linux-x86_64/wheel/./biotite/structure690copying build/lib.linux-x86_64-cpython-314/biotite/structure/box.py -> build/bdist.linux-x86_64/wheel/./biotite/structure691copying build/lib.linux-x86_64-cpython-314/biotite/structure/celllist.py -> build/bdist.linux-x86_64/wheel/./biotite/structure692copying build/lib.linux-x86_64-cpython-314/biotite/structure/chains.py -> build/bdist.linux-x86_64/wheel/./biotite/structure693copying build/lib.linux-x86_64-cpython-314/biotite/structure/charges.py -> build/bdist.linux-x86_64/wheel/./biotite/structure694copying build/lib.linux-x86_64-cpython-314/biotite/structure/compare.py -> build/bdist.linux-x86_64/wheel/./biotite/structure695copying build/lib.linux-x86_64-cpython-314/biotite/structure/connect.py -> build/bdist.linux-x86_64/wheel/./biotite/structure696copying build/lib.linux-x86_64-cpython-314/biotite/structure/density.py -> build/bdist.linux-x86_64/wheel/./biotite/structure697copying build/lib.linux-x86_64-cpython-314/biotite/structure/dotbracket.py -> build/bdist.linux-x86_64/wheel/./biotite/structure698copying build/lib.linux-x86_64-cpython-314/biotite/structure/error.py -> build/bdist.linux-x86_64/wheel/./biotite/structure699copying build/lib.linux-x86_64-cpython-314/biotite/structure/filter.py -> build/bdist.linux-x86_64/wheel/./biotite/structure700copying build/lib.linux-x86_64-cpython-314/biotite/structure/geometry.py -> build/bdist.linux-x86_64/wheel/./biotite/structure701copying build/lib.linux-x86_64-cpython-314/biotite/structure/hbond.py -> build/bdist.linux-x86_64/wheel/./biotite/structure702copying build/lib.linux-x86_64-cpython-314/biotite/structure/integrity.py -> build/bdist.linux-x86_64/wheel/./biotite/structure703copying build/lib.linux-x86_64-cpython-314/biotite/structure/mechanics.py -> build/bdist.linux-x86_64/wheel/./biotite/structure704copying build/lib.linux-x86_64-cpython-314/biotite/structure/molecules.py -> build/bdist.linux-x86_64/wheel/./biotite/structure705copying build/lib.linux-x86_64-cpython-314/biotite/structure/pseudoknots.py -> build/bdist.linux-x86_64/wheel/./biotite/structure706copying build/lib.linux-x86_64-cpython-314/biotite/structure/rdf.py -> build/bdist.linux-x86_64/wheel/./biotite/structure707copying build/lib.linux-x86_64-cpython-314/biotite/structure/repair.py -> build/bdist.linux-x86_64/wheel/./biotite/structure708copying build/lib.linux-x86_64-cpython-314/biotite/structure/residues.py -> build/bdist.linux-x86_64/wheel/./biotite/structure709copying build/lib.linux-x86_64-cpython-314/biotite/structure/rings.py -> build/bdist.linux-x86_64/wheel/./biotite/structure710copying build/lib.linux-x86_64-cpython-314/biotite/structure/sasa.py -> build/bdist.linux-x86_64/wheel/./biotite/structure711copying build/lib.linux-x86_64-cpython-314/biotite/structure/segments.py -> build/bdist.linux-x86_64/wheel/./biotite/structure712copying build/lib.linux-x86_64-cpython-314/biotite/structure/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/structure713copying build/lib.linux-x86_64-cpython-314/biotite/structure/sse.py -> build/bdist.linux-x86_64/wheel/./biotite/structure714copying build/lib.linux-x86_64-cpython-314/biotite/structure/tm.py -> build/bdist.linux-x86_64/wheel/./biotite/structure715copying build/lib.linux-x86_64-cpython-314/biotite/structure/transform.py -> build/bdist.linux-x86_64/wheel/./biotite/structure716copying build/lib.linux-x86_64-cpython-314/biotite/structure/util.py -> build/bdist.linux-x86_64/wheel/./biotite/structure717creating build/bdist.linux-x86_64/wheel/biotite/structure/alphabet718copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet719copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/encoder.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet720copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/i3d.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet721copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/layers.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet722copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/pb.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet723copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/unkerasify.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet724copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/encoder_weights_3di.kerasify -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet725copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/pb.license -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet726creating build/bdist.linux-x86_64/wheel/biotite/structure/graphics727copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics728copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/rna.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics729copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics730creating build/bdist.linux-x86_64/wheel/biotite/structure/info731copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info732copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info733copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/bonds.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info734copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/ccd.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info735copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/groups.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info736copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/masses.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info737copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/misc.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info738copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/radii.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info739copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/standardize.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info740copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/atom_masses.json -> build/bdist.linux-x86_64/wheel/./biotite/structure/info741creating build/bdist.linux-x86_64/wheel/biotite/structure/io742copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io743copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/general.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io744copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trajfile.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io745copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/util.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io746creating build/bdist.linux-x86_64/wheel/biotite/structure/io/dcd747copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/dcd748copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/dcd749creating build/bdist.linux-x86_64/wheel/biotite/structure/io/gro750copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/gro751copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/gro752creating build/bdist.linux-x86_64/wheel/biotite/structure/io/mol753copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol754copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol755copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/ctab.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol756copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/header.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol757copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/mol.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol758copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/sdf.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol759creating build/bdist.linux-x86_64/wheel/biotite/structure/io/netcdf760copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/netcdf761copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/netcdf762creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdb763copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb764copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb765copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb766creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdbqt767copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt768copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt769copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt770creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdbx771copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx772copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/bcif.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx773copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/cif.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx774copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/component.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx775copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/compress.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx776copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx777copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/encoding.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx778creating build/bdist.linux-x86_64/wheel/biotite/structure/io/trr779copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/trr780copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/trr781creating build/bdist.linux-x86_64/wheel/biotite/structure/io/xtc782copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/xtc783copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/xtc784copying build/lib.linux-x86_64-cpython-314/biotite/structure/atoms.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure785copying build/lib.linux-x86_64-cpython-314/biotite/structure/bonds.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure786copying build/lib.linux-x86_64-cpython-314/biotite/structure/celllist.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure787copying build/lib.linux-x86_64-cpython-314/biotite/structure/spacegroups.json -> build/bdist.linux-x86_64/wheel/./biotite/structure788copying build/lib.linux-x86_64-cpython-314/biotite/structure/spacegroups.license -> build/bdist.linux-x86_64/wheel/./biotite/structure789creating build/bdist.linux-x86_64/wheel/biotite/application790copying build/lib.linux-x86_64-cpython-314/biotite/application/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application791copying build/lib.linux-x86_64-cpython-314/biotite/application/application.py -> build/bdist.linux-x86_64/wheel/./biotite/application792copying build/lib.linux-x86_64-cpython-314/biotite/application/localapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application793copying build/lib.linux-x86_64-cpython-314/biotite/application/msaapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application794copying build/lib.linux-x86_64-cpython-314/biotite/application/util.py -> build/bdist.linux-x86_64/wheel/./biotite/application795copying build/lib.linux-x86_64-cpython-314/biotite/application/webapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application796creating build/bdist.linux-x86_64/wheel/biotite/application/autodock797copying build/lib.linux-x86_64-cpython-314/biotite/application/autodock/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/autodock798copying build/lib.linux-x86_64-cpython-314/biotite/application/autodock/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/autodock799creating build/bdist.linux-x86_64/wheel/biotite/application/blast800copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast801copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast802copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/webapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast803creating build/bdist.linux-x86_64/wheel/biotite/application/clustalo804copying build/lib.linux-x86_64-cpython-314/biotite/application/clustalo/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/clustalo805copying build/lib.linux-x86_64-cpython-314/biotite/application/clustalo/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/clustalo806creating build/bdist.linux-x86_64/wheel/biotite/application/dssp807copying build/lib.linux-x86_64-cpython-314/biotite/application/dssp/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/dssp808copying build/lib.linux-x86_64-cpython-314/biotite/application/dssp/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/dssp809creating build/bdist.linux-x86_64/wheel/biotite/application/mafft810copying build/lib.linux-x86_64-cpython-314/biotite/application/mafft/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/mafft811copying build/lib.linux-x86_64-cpython-314/biotite/application/mafft/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/mafft812creating build/bdist.linux-x86_64/wheel/biotite/application/muscle813copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle814copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/app3.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle815copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/app5.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle816creating build/bdist.linux-x86_64/wheel/biotite/application/sra817copying build/lib.linux-x86_64-cpython-314/biotite/application/sra/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/sra818copying build/lib.linux-x86_64-cpython-314/biotite/application/sra/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/sra819creating build/bdist.linux-x86_64/wheel/biotite/application/tantan820copying build/lib.linux-x86_64-cpython-314/biotite/application/tantan/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/tantan821copying build/lib.linux-x86_64-cpython-314/biotite/application/tantan/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/tantan822creating build/bdist.linux-x86_64/wheel/biotite/application/viennarna823copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnaalifold.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna824copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnafold.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna825copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnaplot.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna826copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/util.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna827copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna828creating build/bdist.linux-x86_64/wheel/biotite/database829copying build/lib.linux-x86_64-cpython-314/biotite/database/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database830copying build/lib.linux-x86_64-cpython-314/biotite/database/error.py -> build/bdist.linux-x86_64/wheel/./biotite/database831creating build/bdist.linux-x86_64/wheel/biotite/database/afdb832copying build/lib.linux-x86_64-cpython-314/biotite/database/afdb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/afdb833copying build/lib.linux-x86_64-cpython-314/biotite/database/afdb/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/afdb834creating build/bdist.linux-x86_64/wheel/biotite/database/entrez835copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez836copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/check.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez837copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/dbnames.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez838copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez839copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/key.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez840copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez841creating build/bdist.linux-x86_64/wheel/biotite/database/pubchem842copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem843copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem844copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/error.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem845copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem846copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/throttle.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem847creating build/bdist.linux-x86_64/wheel/biotite/database/rcsb848copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb849copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb850copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb851creating build/bdist.linux-x86_64/wheel/biotite/database/uniprot852copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/check.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot853copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot854copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot855copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot856creating build/bdist.linux-x86_64/wheel/biotite/interface857copying build/lib.linux-x86_64-cpython-314/biotite/interface/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface858copying build/lib.linux-x86_64-cpython-314/biotite/interface/version.py -> build/bdist.linux-x86_64/wheel/./biotite/interface859copying build/lib.linux-x86_64-cpython-314/biotite/interface/warning.py -> build/bdist.linux-x86_64/wheel/./biotite/interface860creating build/bdist.linux-x86_64/wheel/biotite/interface/openmm861copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm862copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/state.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm863copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/system.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm864creating build/bdist.linux-x86_64/wheel/biotite/interface/pymol865copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol866copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/cgo.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol867copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol868copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/display.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol869copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/object.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol870copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/shapes.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol871copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/startup.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol872creating build/bdist.linux-x86_64/wheel/biotite/interface/rdkit873copying build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/rdkit874copying build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit/mol.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/rdkit875creating build/bdist.linux-x86_64/wheel/biotite/sequence876copying build/lib.linux-x86_64-cpython-314/biotite/sequence/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence877copying build/lib.linux-x86_64-cpython-314/biotite/sequence/alphabet.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence878copying build/lib.linux-x86_64-cpython-314/biotite/sequence/annotation.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence879copying build/lib.linux-x86_64-cpython-314/biotite/sequence/codon.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence880copying build/lib.linux-x86_64-cpython-314/biotite/sequence/profile.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence881copying build/lib.linux-x86_64-cpython-314/biotite/sequence/search.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence882copying build/lib.linux-x86_64-cpython-314/biotite/sequence/seqtypes.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence883copying build/lib.linux-x86_64-cpython-314/biotite/sequence/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence884creating build/bdist.linux-x86_64/wheel/biotite/sequence/phylo885copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo886copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo887copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo888copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo889copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo890copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo891copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo892copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo893copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo894copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo895copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo896copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo897copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo898creating build/bdist.linux-x86_64/wheel/biotite/sequence/align899copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align900copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align901copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/buckets.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align902copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/cigar.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align903copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align904copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/statistics.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align905copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align906copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align907copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align908copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align909copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align910copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align911copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align912copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align913copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align914copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpp -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align915copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align916copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align917copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align918copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align919copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align920copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align921copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align922copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align923copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align924copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align925copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align926copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align927copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align928copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align929copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align930copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align931copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align932copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/primes.txt -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align933copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align934copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align935copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align936copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align937copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.pxd -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align938copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align939creating build/bdist.linux-x86_64/wheel/biotite/sequence/align/matrix_data940copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/3Di.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data941copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data942copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data943copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data944copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data945copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data946copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data947copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data948copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data949copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data950copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data951copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data952copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data953copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data954copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data955copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data956copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data957copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data958copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data959copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data960copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data961copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data962copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data963copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data964copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data965copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data966copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data967copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data968copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data969copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data970copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/GONNET.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data971copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data972copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/MATCH.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data973copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/NUC.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data974copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM10.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data975copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM100.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data976copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM110.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data977copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM120.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data978copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM130.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data979copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM140.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data980copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM150.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data981copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM160.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data982copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM170.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data983copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM180.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data984copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM190.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data985copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM20.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data986copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM200.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data987copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM210.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data988copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM220.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data989copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM230.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data990copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM240.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data991copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM250.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data992copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM260.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data993copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM270.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data994copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM280.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data995copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM290.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data996copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM30.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data997copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM300.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data998copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM310.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data999copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM320.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1000copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM330.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1001copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM340.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1002copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM350.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1003copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM360.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1004copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM370.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1005copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM380.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1006copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM390.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1007copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM40.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1008copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM400.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1009copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM410.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1010copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM420.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1011copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM430.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1012copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM440.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1013copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM450.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1014copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM460.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1015copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM470.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1016copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM480.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1017copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM490.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1018copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM50.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1019copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM500.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1020copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM60.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1021copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM70.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1022copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM80.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1023copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM90.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1024copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PB.license -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1025copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PB.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1026copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1027copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1028copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1029copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1030copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1031copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data1032copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align1033copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align1034copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align1035copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align1036copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align1037copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align1038copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align1039copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align1040copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align1041copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align1042copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align1043creating build/bdist.linux-x86_64/wheel/biotite/sequence/graphics1044copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics1045copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics1046copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/colorschemes.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics1047copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/dendrogram.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics1048copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/features.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics1049copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/logo.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics1050copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/plasmid.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics1051creating build/bdist.linux-x86_64/wheel/biotite/sequence/graphics/color_schemes1052copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/3di_flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1053copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/autumn.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1054copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/blossom.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1055copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1056copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1057copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1058copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1059copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1060copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1061copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1062copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1063copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1064copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1065copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/ocean.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1066copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1067copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1068copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1069copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/spring.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1070copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/sunset.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1071copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/wither.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes1072creating build/bdist.linux-x86_64/wheel/biotite/sequence/io1073copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/general.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io1074copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io1075creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/genbank1076copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank1077copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/annotation.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank1078copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank1079copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/metadata.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank1080copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank1081creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/gff1082copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff1083copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff1084copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff1085creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/clustal1086copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal1087copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal1088copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal1089creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/fasta1090copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta1091copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta1092copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta1093creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/fastq1094copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq1095copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq1096copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq1097copying build/lib.linux-x86_64-cpython-314/biotite/sequence/codon_tables.txt -> build/bdist.linux-x86_64/wheel/./biotite/sequence1098copying build/lib.linux-x86_64-cpython-314/biotite/py.typed -> build/bdist.linux-x86_64/wheel/./biotite1099copying build/lib.linux-x86_64-cpython-314/biotite/rust.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite1100creating build/bdist.linux-x86_64/wheel/rust1101copying build/lib.linux-x86_64-cpython-314/rust/lib.rs -> build/bdist.linux-x86_64/wheel/./rust1102copying build/lib.linux-x86_64-cpython-314/rust/util.rs -> build/bdist.linux-x86_64/wheel/./rust1103creating build/bdist.linux-x86_64/wheel/rust/sequence1104copying build/lib.linux-x86_64-cpython-314/rust/sequence/codec.rs -> build/bdist.linux-x86_64/wheel/./rust/sequence1105copying build/lib.linux-x86_64-cpython-314/rust/sequence/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/sequence1106creating build/bdist.linux-x86_64/wheel/rust/structure1107copying build/lib.linux-x86_64-cpython-314/rust/structure/bonds.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1108copying build/lib.linux-x86_64-cpython-314/rust/structure/celllist.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1109copying build/lib.linux-x86_64-cpython-314/rust/structure/charges.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1110copying build/lib.linux-x86_64-cpython-314/rust/structure/connect.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1111copying build/lib.linux-x86_64-cpython-314/rust/structure/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1112copying build/lib.linux-x86_64-cpython-314/rust/structure/sasa.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1113copying build/lib.linux-x86_64-cpython-314/rust/structure/util.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1114creating build/bdist.linux-x86_64/wheel/rust/structure/io1115copying build/lib.linux-x86_64-cpython-314/rust/structure/io/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io1116creating build/bdist.linux-x86_64/wheel/rust/structure/io/pdb1117copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/file.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb1118copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/hybrid36.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb1119copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb1120creating build/bdist.linux-x86_64/wheel/rust/structure/io/pdbx1121copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx/encoding.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdbx1122copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdbx1123running install_egg_info1124Copying src/biotite.egg-info to build/bdist.linux-x86_64/wheel/./biotite-1.7.1-py3.14.egg-info1125running install_scripts1126creating build/bdist.linux-x86_64/wheel/biotite-1.7.1.dist-info/WHEEL1127creating '/build/source/dist/.tmp-r8vr8el9/biotite-1.7.1-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it1128adding 'biotite/__init__.py'1129adding 'biotite/copyable.py'1130adding 'biotite/file.py'1131adding 'biotite/py.typed'1132adding 'biotite/rust.cpython-314-x86_64-linux-gnu.so'1133adding 'biotite/setup_ccd.py'1134adding 'biotite/typing.py'1135adding 'biotite/version.py'1136adding 'biotite/visualize.py'1137adding 'biotite/application/__init__.py'1138adding 'biotite/application/application.py'1139adding 'biotite/application/localapp.py'1140adding 'biotite/application/msaapp.py'1141adding 'biotite/application/util.py'1142adding 'biotite/application/webapp.py'1143adding 'biotite/application/autodock/__init__.py'1144adding 'biotite/application/autodock/app.py'1145adding 'biotite/application/blast/__init__.py'1146adding 'biotite/application/blast/alignment.py'1147adding 'biotite/application/blast/webapp.py'1148adding 'biotite/application/clustalo/__init__.py'1149adding 'biotite/application/clustalo/app.py'1150adding 'biotite/application/dssp/__init__.py'1151adding 'biotite/application/dssp/app.py'1152adding 'biotite/application/mafft/__init__.py'1153adding 'biotite/application/mafft/app.py'1154adding 'biotite/application/muscle/__init__.py'1155adding 'biotite/application/muscle/app3.py'1156adding 'biotite/application/muscle/app5.py'1157adding 'biotite/application/sra/__init__.py'1158adding 'biotite/application/sra/app.py'1159adding 'biotite/application/tantan/__init__.py'1160adding 'biotite/application/tantan/app.py'1161adding 'biotite/application/viennarna/__init__.py'1162adding 'biotite/application/viennarna/rnaalifold.py'1163adding 'biotite/application/viennarna/rnafold.py'1164adding 'biotite/application/viennarna/rnaplot.py'1165adding 'biotite/application/viennarna/util.py'1166adding 'biotite/database/__init__.py'1167adding 'biotite/database/error.py'1168adding 'biotite/database/afdb/__init__.py'1169adding 'biotite/database/afdb/download.py'1170adding 'biotite/database/entrez/__init__.py'1171adding 'biotite/database/entrez/check.py'1172adding 'biotite/database/entrez/dbnames.py'1173adding 'biotite/database/entrez/download.py'1174adding 'biotite/database/entrez/key.py'1175adding 'biotite/database/entrez/query.py'1176adding 'biotite/database/pubchem/__init__.py'1177adding 'biotite/database/pubchem/download.py'1178adding 'biotite/database/pubchem/error.py'1179adding 'biotite/database/pubchem/query.py'1180adding 'biotite/database/pubchem/throttle.py'1181adding 'biotite/database/rcsb/__init__.py'1182adding 'biotite/database/rcsb/download.py'1183adding 'biotite/database/rcsb/query.py'1184adding 'biotite/database/uniprot/__init__.py'1185adding 'biotite/database/uniprot/check.py'1186adding 'biotite/database/uniprot/download.py'1187adding 'biotite/database/uniprot/query.py'1188adding 'biotite/interface/__init__.py'1189adding 'biotite/interface/version.py'1190adding 'biotite/interface/warning.py'1191adding 'biotite/interface/openmm/__init__.py'1192adding 'biotite/interface/openmm/state.py'1193adding 'biotite/interface/openmm/system.py'1194adding 'biotite/interface/pymol/__init__.py'1195adding 'biotite/interface/pymol/cgo.py'1196adding 'biotite/interface/pymol/convert.py'1197adding 'biotite/interface/pymol/display.py'1198adding 'biotite/interface/pymol/object.py'1199adding 'biotite/interface/pymol/shapes.py'1200adding 'biotite/interface/pymol/startup.py'1201adding 'biotite/interface/rdkit/__init__.py'1202adding 'biotite/interface/rdkit/mol.py'1203adding 'biotite/sequence/__init__.py'1204adding 'biotite/sequence/alphabet.py'1205adding 'biotite/sequence/annotation.py'1206adding 'biotite/sequence/codon.py'1207adding 'biotite/sequence/codon_tables.txt'1208adding 'biotite/sequence/profile.py'1209adding 'biotite/sequence/search.py'1210adding 'biotite/sequence/seqtypes.py'1211adding 'biotite/sequence/sequence.py'1212adding 'biotite/sequence/align/__init__.py'1213adding 'biotite/sequence/align/alignment.py'1214adding 'biotite/sequence/align/banded.c'1215adding 'biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so'1216adding 'biotite/sequence/align/banded.pyi'1217adding 'biotite/sequence/align/banded.pyx'1218adding 'biotite/sequence/align/buckets.py'1219adding 'biotite/sequence/align/cigar.py'1220adding 'biotite/sequence/align/kmeralphabet.c'1221adding 'biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so'1222adding 'biotite/sequence/align/kmeralphabet.pyi'1223adding 'biotite/sequence/align/kmeralphabet.pyx'1224adding 'biotite/sequence/align/kmersimilarity.c'1225adding 'biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so'1226adding 'biotite/sequence/align/kmersimilarity.pyi'1227adding 'biotite/sequence/align/kmersimilarity.pyx'1228adding 'biotite/sequence/align/kmertable.cpp'1229adding 'biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so'1230adding 'biotite/sequence/align/kmertable.pyi'1231adding 'biotite/sequence/align/kmertable.pyx'1232adding 'biotite/sequence/align/localgapped.c'1233adding 'biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so'1234adding 'biotite/sequence/align/localgapped.pyi'1235adding 'biotite/sequence/align/localgapped.pyx'1236adding 'biotite/sequence/align/localungapped.c'1237adding 'biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so'1238adding 'biotite/sequence/align/localungapped.pyi'1239adding 'biotite/sequence/align/localungapped.pyx'1240adding 'biotite/sequence/align/matrix.py'1241adding 'biotite/sequence/align/multiple.c'1242adding 'biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so'1243adding 'biotite/sequence/align/multiple.pyi'1244adding 'biotite/sequence/align/multiple.pyx'1245adding 'biotite/sequence/align/pairwise.c'1246adding 'biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so'1247adding 'biotite/sequence/align/pairwise.pyi'1248adding 'biotite/sequence/align/pairwise.pyx'1249adding 'biotite/sequence/align/permutation.c'1250adding 'biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so'1251adding 'biotite/sequence/align/permutation.pyi'1252adding 'biotite/sequence/align/permutation.pyx'1253adding 'biotite/sequence/align/primes.txt'1254adding 'biotite/sequence/align/selector.c'1255adding 'biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so'1256adding 'biotite/sequence/align/selector.pyi'1257adding 'biotite/sequence/align/selector.pyx'1258adding 'biotite/sequence/align/statistics.py'1259adding 'biotite/sequence/align/tracetable.c'1260adding 'biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so'1261adding 'biotite/sequence/align/tracetable.pxd'1262adding 'biotite/sequence/align/tracetable.pyx'1263adding 'biotite/sequence/align/matrix_data/3Di.mat'1264adding 'biotite/sequence/align/matrix_data/BLOSUM100.mat'1265adding 'biotite/sequence/align/matrix_data/BLOSUM30.mat'1266adding 'biotite/sequence/align/matrix_data/BLOSUM35.mat'1267adding 'biotite/sequence/align/matrix_data/BLOSUM40.mat'1268adding 'biotite/sequence/align/matrix_data/BLOSUM45.mat'1269adding 'biotite/sequence/align/matrix_data/BLOSUM50.mat'1270adding 'biotite/sequence/align/matrix_data/BLOSUM50_13p.mat'1271adding 'biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat'1272adding 'biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat'1273adding 'biotite/sequence/align/matrix_data/BLOSUM55.mat'1274adding 'biotite/sequence/align/matrix_data/BLOSUM60.mat'1275adding 'biotite/sequence/align/matrix_data/BLOSUM62.mat'1276adding 'biotite/sequence/align/matrix_data/BLOSUM62_13p.mat'1277adding 'biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat'1278adding 'biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat'1279adding 'biotite/sequence/align/matrix_data/BLOSUM65.mat'1280adding 'biotite/sequence/align/matrix_data/BLOSUM70.mat'1281adding 'biotite/sequence/align/matrix_data/BLOSUM75.mat'1282adding 'biotite/sequence/align/matrix_data/BLOSUM80.mat'1283adding 'biotite/sequence/align/matrix_data/BLOSUM85.mat'1284adding 'biotite/sequence/align/matrix_data/BLOSUM90.mat'1285adding 'biotite/sequence/align/matrix_data/BLOSUMN.mat'1286adding 'biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat'1287adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat'1288adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat'1289adding 'biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat'1290adding 'biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat'1291adding 'biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat'1292adding 'biotite/sequence/align/matrix_data/DAYHOFF.mat'1293adding 'biotite/sequence/align/matrix_data/GONNET.mat'1294adding 'biotite/sequence/align/matrix_data/IDENTITY.mat'1295adding 'biotite/sequence/align/matrix_data/MATCH.mat'1296adding 'biotite/sequence/align/matrix_data/NUC.mat'1297adding 'biotite/sequence/align/matrix_data/PAM10.mat'1298adding 'biotite/sequence/align/matrix_data/PAM100.mat'1299adding 'biotite/sequence/align/matrix_data/PAM110.mat'1300adding 'biotite/sequence/align/matrix_data/PAM120.mat'1301adding 'biotite/sequence/align/matrix_data/PAM130.mat'1302adding 'biotite/sequence/align/matrix_data/PAM140.mat'1303adding 'biotite/sequence/align/matrix_data/PAM150.mat'1304adding 'biotite/sequence/align/matrix_data/PAM160.mat'1305adding 'biotite/sequence/align/matrix_data/PAM170.mat'1306adding 'biotite/sequence/align/matrix_data/PAM180.mat'1307adding 'biotite/sequence/align/matrix_data/PAM190.mat'1308adding 'biotite/sequence/align/matrix_data/PAM20.mat'1309adding 'biotite/sequence/align/matrix_data/PAM200.mat'1310adding 'biotite/sequence/align/matrix_data/PAM210.mat'1311adding 'biotite/sequence/align/matrix_data/PAM220.mat'1312adding 'biotite/sequence/align/matrix_data/PAM230.mat'1313adding 'biotite/sequence/align/matrix_data/PAM240.mat'1314adding 'biotite/sequence/align/matrix_data/PAM250.mat'1315adding 'biotite/sequence/align/matrix_data/PAM260.mat'1316adding 'biotite/sequence/align/matrix_data/PAM270.mat'1317adding 'biotite/sequence/align/matrix_data/PAM280.mat'1318adding 'biotite/sequence/align/matrix_data/PAM290.mat'1319adding 'biotite/sequence/align/matrix_data/PAM30.mat'1320adding 'biotite/sequence/align/matrix_data/PAM300.mat'1321adding 'biotite/sequence/align/matrix_data/PAM310.mat'1322adding 'biotite/sequence/align/matrix_data/PAM320.mat'1323adding 'biotite/sequence/align/matrix_data/PAM330.mat'1324adding 'biotite/sequence/align/matrix_data/PAM340.mat'1325adding 'biotite/sequence/align/matrix_data/PAM350.mat'1326adding 'biotite/sequence/align/matrix_data/PAM360.mat'1327adding 'biotite/sequence/align/matrix_data/PAM370.mat'1328adding 'biotite/sequence/align/matrix_data/PAM380.mat'1329adding 'biotite/sequence/align/matrix_data/PAM390.mat'1330adding 'biotite/sequence/align/matrix_data/PAM40.mat'1331adding 'biotite/sequence/align/matrix_data/PAM400.mat'1332adding 'biotite/sequence/align/matrix_data/PAM410.mat'1333adding 'biotite/sequence/align/matrix_data/PAM420.mat'1334adding 'biotite/sequence/align/matrix_data/PAM430.mat'1335adding 'biotite/sequence/align/matrix_data/PAM440.mat'1336adding 'biotite/sequence/align/matrix_data/PAM450.mat'1337adding 'biotite/sequence/align/matrix_data/PAM460.mat'1338adding 'biotite/sequence/align/matrix_data/PAM470.mat'1339adding 'biotite/sequence/align/matrix_data/PAM480.mat'1340adding 'biotite/sequence/align/matrix_data/PAM490.mat'1341adding 'biotite/sequence/align/matrix_data/PAM50.mat'1342adding 'biotite/sequence/align/matrix_data/PAM500.mat'1343adding 'biotite/sequence/align/matrix_data/PAM60.mat'1344adding 'biotite/sequence/align/matrix_data/PAM70.mat'1345adding 'biotite/sequence/align/matrix_data/PAM80.mat'1346adding 'biotite/sequence/align/matrix_data/PAM90.mat'1347adding 'biotite/sequence/align/matrix_data/PB.license'1348adding 'biotite/sequence/align/matrix_data/PB.mat'1349adding 'biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat'1350adding 'biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat'1351adding 'biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat'1352adding 'biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat'1353adding 'biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat'1354adding 'biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat'1355adding 'biotite/sequence/graphics/__init__.py'1356adding 'biotite/sequence/graphics/alignment.py'1357adding 'biotite/sequence/graphics/colorschemes.py'1358adding 'biotite/sequence/graphics/dendrogram.py'1359adding 'biotite/sequence/graphics/features.py'1360adding 'biotite/sequence/graphics/logo.py'1361adding 'biotite/sequence/graphics/plasmid.py'1362adding 'biotite/sequence/graphics/color_schemes/3di_flower.json'1363adding 'biotite/sequence/graphics/color_schemes/autumn.json'1364adding 'biotite/sequence/graphics/color_schemes/blossom.json'1365adding 'biotite/sequence/graphics/color_schemes/clustalx_dna.json'1366adding 'biotite/sequence/graphics/color_schemes/clustalx_protein.json'1367adding 'biotite/sequence/graphics/color_schemes/flower.json'1368adding 'biotite/sequence/graphics/color_schemes/jalview_buried.json'1369adding 'biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json'1370adding 'biotite/sequence/graphics/color_schemes/jalview_prop_helix.json'1371adding 'biotite/sequence/graphics/color_schemes/jalview_prop_strand.json'1372adding 'biotite/sequence/graphics/color_schemes/jalview_prop_turn.json'1373adding 'biotite/sequence/graphics/color_schemes/jalview_taylor.json'1374adding 'biotite/sequence/graphics/color_schemes/jalview_zappo.json'1375adding 'biotite/sequence/graphics/color_schemes/ocean.json'1376adding 'biotite/sequence/graphics/color_schemes/pb_flower.json'1377adding 'biotite/sequence/graphics/color_schemes/rainbow_dna.json'1378adding 'biotite/sequence/graphics/color_schemes/rainbow_protein.json'1379adding 'biotite/sequence/graphics/color_schemes/spring.json'1380adding 'biotite/sequence/graphics/color_schemes/sunset.json'1381adding 'biotite/sequence/graphics/color_schemes/wither.json'1382adding 'biotite/sequence/io/__init__.py'1383adding 'biotite/sequence/io/general.py'1384adding 'biotite/sequence/io/clustal/__init__.py'1385adding 'biotite/sequence/io/clustal/convert.py'1386adding 'biotite/sequence/io/clustal/file.py'1387adding 'biotite/sequence/io/fasta/__init__.py'1388adding 'biotite/sequence/io/fasta/convert.py'1389adding 'biotite/sequence/io/fasta/file.py'1390adding 'biotite/sequence/io/fastq/__init__.py'1391adding 'biotite/sequence/io/fastq/convert.py'1392adding 'biotite/sequence/io/fastq/file.py'1393adding 'biotite/sequence/io/genbank/__init__.py'1394adding 'biotite/sequence/io/genbank/annotation.py'1395adding 'biotite/sequence/io/genbank/file.py'1396adding 'biotite/sequence/io/genbank/metadata.py'1397adding 'biotite/sequence/io/genbank/sequence.py'1398adding 'biotite/sequence/io/gff/__init__.py'1399adding 'biotite/sequence/io/gff/convert.py'1400adding 'biotite/sequence/io/gff/file.py'1401adding 'biotite/sequence/phylo/__init__.py'1402adding 'biotite/sequence/phylo/nj.c'1403adding 'biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so'1404adding 'biotite/sequence/phylo/nj.pyi'1405adding 'biotite/sequence/phylo/nj.pyx'1406adding 'biotite/sequence/phylo/tree.c'1407adding 'biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so'1408adding 'biotite/sequence/phylo/tree.pyi'1409adding 'biotite/sequence/phylo/tree.pyx'1410adding 'biotite/sequence/phylo/upgma.c'1411adding 'biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so'1412adding 'biotite/sequence/phylo/upgma.pyi'1413adding 'biotite/sequence/phylo/upgma.pyx'1414adding 'biotite/structure/__init__.py'1415adding 'biotite/structure/atoms.py'1416adding 'biotite/structure/atoms.pyi'1417adding 'biotite/structure/basepairs.py'1418adding 'biotite/structure/bonds.py'1419adding 'biotite/structure/bonds.pyi'1420adding 'biotite/structure/box.py'1421adding 'biotite/structure/celllist.py'1422adding 'biotite/structure/celllist.pyi'1423adding 'biotite/structure/chains.py'1424adding 'biotite/structure/charges.py'1425adding 'biotite/structure/compare.py'1426adding 'biotite/structure/connect.py'1427adding 'biotite/structure/density.py'1428adding 'biotite/structure/dotbracket.py'1429adding 'biotite/structure/error.py'1430adding 'biotite/structure/filter.py'1431adding 'biotite/structure/geometry.py'1432adding 'biotite/structure/hbond.py'1433adding 'biotite/structure/integrity.py'1434adding 'biotite/structure/mechanics.py'1435adding 'biotite/structure/molecules.py'1436adding 'biotite/structure/pseudoknots.py'1437adding 'biotite/structure/rdf.py'1438adding 'biotite/structure/repair.py'1439adding 'biotite/structure/residues.py'1440adding 'biotite/structure/rings.py'1441adding 'biotite/structure/sasa.py'1442adding 'biotite/structure/segments.py'1443adding 'biotite/structure/sequence.py'1444adding 'biotite/structure/spacegroups.json'1445adding 'biotite/structure/spacegroups.license'1446adding 'biotite/structure/sse.py'1447adding 'biotite/structure/superimpose.py'1448adding 'biotite/structure/tm.py'1449adding 'biotite/structure/transform.py'1450adding 'biotite/structure/util.py'1451adding 'biotite/structure/alphabet/__init__.py'1452adding 'biotite/structure/alphabet/encoder.py'1453adding 'biotite/structure/alphabet/encoder_weights_3di.kerasify'1454adding 'biotite/structure/alphabet/i3d.py'1455adding 'biotite/structure/alphabet/layers.py'1456adding 'biotite/structure/alphabet/pb.license'1457adding 'biotite/structure/alphabet/pb.py'1458adding 'biotite/structure/alphabet/unkerasify.py'1459adding 'biotite/structure/graphics/__init__.py'1460adding 'biotite/structure/graphics/atoms.py'1461adding 'biotite/structure/graphics/rna.py'1462adding 'biotite/structure/info/__init__.py'1463adding 'biotite/structure/info/atom_masses.json'1464adding 'biotite/structure/info/atoms.py'1465adding 'biotite/structure/info/bonds.py'1466adding 'biotite/structure/info/ccd.py'1467adding 'biotite/structure/info/groups.py'1468adding 'biotite/structure/info/masses.py'1469adding 'biotite/structure/info/misc.py'1470adding 'biotite/structure/info/radii.py'1471adding 'biotite/structure/info/standardize.py'1472adding 'biotite/structure/io/__init__.py'1473adding 'biotite/structure/io/general.py'1474adding 'biotite/structure/io/trajfile.py'1475adding 'biotite/structure/io/util.py'1476adding 'biotite/structure/io/dcd/__init__.py'1477adding 'biotite/structure/io/dcd/file.py'1478adding 'biotite/structure/io/gro/__init__.py'1479adding 'biotite/structure/io/gro/file.py'1480adding 'biotite/structure/io/mol/__init__.py'1481adding 'biotite/structure/io/mol/convert.py'1482adding 'biotite/structure/io/mol/ctab.py'1483adding 'biotite/structure/io/mol/header.py'1484adding 'biotite/structure/io/mol/mol.py'1485adding 'biotite/structure/io/mol/sdf.py'1486adding 'biotite/structure/io/netcdf/__init__.py'1487adding 'biotite/structure/io/netcdf/file.py'1488adding 'biotite/structure/io/pdb/__init__.py'1489adding 'biotite/structure/io/pdb/convert.py'1490adding 'biotite/structure/io/pdb/file.py'1491adding 'biotite/structure/io/pdbqt/__init__.py'1492adding 'biotite/structure/io/pdbqt/convert.py'1493adding 'biotite/structure/io/pdbqt/file.py'1494adding 'biotite/structure/io/pdbx/__init__.py'1495adding 'biotite/structure/io/pdbx/bcif.py'1496adding 'biotite/structure/io/pdbx/cif.py'1497adding 'biotite/structure/io/pdbx/component.py'1498adding 'biotite/structure/io/pdbx/compress.py'1499adding 'biotite/structure/io/pdbx/convert.py'1500adding 'biotite/structure/io/pdbx/encoding.py'1501adding 'biotite/structure/io/trr/__init__.py'1502adding 'biotite/structure/io/trr/file.py'1503adding 'biotite/structure/io/xtc/__init__.py'1504adding 'biotite/structure/io/xtc/file.py'1505adding 'biotite-1.7.1.dist-info/licenses/LICENSE.rst'1506adding 'rust/lib.rs'1507adding 'rust/util.rs'1508adding 'rust/sequence/codec.rs'1509adding 'rust/sequence/mod.rs'1510adding 'rust/structure/bonds.rs'1511adding 'rust/structure/celllist.rs'1512adding 'rust/structure/charges.rs'1513adding 'rust/structure/connect.rs'1514adding 'rust/structure/mod.rs'1515adding 'rust/structure/sasa.rs'1516adding 'rust/structure/util.rs'1517adding 'rust/structure/io/mod.rs'1518adding 'rust/structure/io/pdb/file.rs'1519adding 'rust/structure/io/pdb/hybrid36.rs'1520adding 'rust/structure/io/pdb/mod.rs'1521adding 'rust/structure/io/pdbx/encoding.rs'1522adding 'rust/structure/io/pdbx/mod.rs'1523adding 'biotite-1.7.1.dist-info/METADATA'1524adding 'biotite-1.7.1.dist-info/WHEEL'1525adding 'biotite-1.7.1.dist-info/top_level.txt'1526adding 'biotite-1.7.1.dist-info/RECORD'1527removing build/bdist.linux-x86_64/wheel1528Successfully built biotite-1.7.1-cp314-cp314-linux_x86_64.whl1529Finished creating a wheel...1530Finished executing pypaBuildPhase1531buildPhase completed in 3 minutes 20 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1532Executing pythonRuntimeDepsCheck1533Checking runtime dependencies for biotite-1.7.1-cp314-cp314-linux_x86_64.whl1534Finished executing pythonRuntimeDepsCheckinstallPhase
1535Executing pypaInstallPhase1536Successfully installed biotite-1.7.1-cp314-cp314-linux_x86_64.whl1537Finished executing pypaInstallPhasepythonOutputDistPhase
1538Executing pythonOutputDistPhase1539Finished executing pythonOutputDistPhasefixupPhase
1540shrinking RPATHs of ELF executables and libraries in /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.11541shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/rust.cpython-314-x86_64-linux-gnu.so1542shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so1543shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so1544shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so1545shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so1546shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so1547shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so1548shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so1549shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so1550shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so1551shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so1552shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so1553shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so1554shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so1555shrinking /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so1556checking for references to /build/ in /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1...1557patching script interpreter paths in /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.11558stripping (with command strip and flags -S -p) in /nix/store/icrx3i132ywmmfx46vj72xwfmff73iqq-python3.14-biotite-1.7.1/lib1559shrinking RPATHs of ELF executables and libraries in /nix/store/xcgx29vr8wvkh33qxwd0sj1xmxch01j5-python3.14-biotite-1.7.1-dist1560checking for references to /build/ in /nix/store/xcgx29vr8wvkh33qxwd0sj1xmxch01j5-python3.14-biotite-1.7.1-dist...1561patching script interpreter paths in /nix/store/xcgx29vr8wvkh33qxwd0sj1xmxch01j5-python3.14-biotite-1.7.1-dist1562Executing pythonRemoveTestsDir1563Finished executing pythonRemoveTestsDirpythonImportsCheckPhase
1564Executing pythonImportsCheckPhase1565Check whether the following modules can be imported: biotite biotite.sequence biotite.structurepythonMetadataCheckPhase
1566Executing pythonMetadataCheckPhase