these 2 derivations will be built:
  /nix/store/8f0alx3f6b65qwnm8sms8n9fj8adlysx-source.drv
  /nix/store/z89h9d7lm8lrd9w3iza4a851g650c7cn-python3.14-snapgene-reader-0.1.23.drv
these 18 paths will be fetched (489.3 KiB download, 2.1 MiB unpacked):
  /nix/store/icp6fgjg12fks3i0wfl0bjfjgvd03y9c-ensure-newer-sources-hook
  /nix/store/cgknvydg87rr6zg9031vqd9jdhf31fai-pypa-build-hook.sh
  /nix/store/vcyvxgzq8xh633sx9gghzjh0fkcl6x8b-pypa-install-hook
  /nix/store/jamc5mdgkza901ybnkmq007rh7wsl7qy-pytest-check-hook
  /nix/store/w6dircc3f4f745my3gq95hdbkk7bvr0h-python-catch-conflicts-hook
  /nix/store/35rk2x7hsckqsn42407rgjjaladlrcrh-python-imports-check-hook.sh
  /nix/store/9zhvs91agisk6q7yvgdznm83kyzaaany-python-metadata-check-hook.sh
  /nix/store/j1na7wnx9wxkkv9kw9fdhrddzn3apvqp-python-namespaces-hook.sh
  /nix/store/iwc9mdnh2ws5j0l7iy7bqbff6drlvssq-python-output-dist-hook
  /nix/store/k7ycyrwznqz0amqcy78yi1gabhz9xcnz-python-remove-bin-bytecode-hook
  /nix/store/jd0nnjczrfnb0kn6p42lqm26dfiylvyp-python-remove-tests-dir-hook
  /nix/store/vwpxymga69qm3h5yd920p8iy4xkzpbzb-python-runtime-deps-check-hook.sh
  /nix/store/pi4gvq8jbjh40qvd6i0yclxwpr64vpmw-python3-3.14.7-env
  /nix/store/lqvxqpqa7yw0qcl5vf7i2hkh00zls5m0-python3.14-build-1.5.1
  /nix/store/4cahraqqkmfws6i3l5kwpayn0i0i12s5-python3.14-installer-1.0.1
  /nix/store/khhd398h6fy0alc7fjfyqssd1bz58xr1-python3.14-pyproject-hooks-1.2.0
  /nix/store/byxqz565bpx22h98v1qm1pl6x3ny72w1-python3.14-wheel-0.47.0
  /nix/store/bnm3ppcxy786lcfq6lqni25mi9svpj32-wrap-python-hook
building '/nix/store/rf373wqz4ijgb2yf9cjjww1l96201faj-source.drv'
source> structuredAttrs is enabled
source> 
source> trying https://github.com/Edinburgh-Genome-Foundry/SnapGeneReader/archive/refs/tags/v0.1.23.tar.gz
source>   % Total    % Received % Xferd  Average Speed  Time    Time    Time   Current
source>                                  Dload  Upload  Total   Spent   Left   Speed
source> 
source>   0      0   0      0   0      0      0      0                              0
source>   0      0   0      0   0      0      0      0                              0
source>   0      0   0      0   0      0      0      0                              0
source> 
source>   0      0   0      0   0      0      0      0                              0
source> 100 625.6k   0 625.6k   0      0 941.8k      0                              0
source> 100 625.6k   0 625.6k   0      0 941.7k      0                              0
source> 100 625.6k   0 625.6k   0      0 941.6k      0                              0
source> unpacking source archive /build/download.tar.gz
building '/nix/store/z89h9d7lm8lrd9w3iza4a851g650c7cn-python3.14-snapgene-reader-0.1.23.drv'
python3.14-snapgene-reader-0.1.23> Sourcing python-remove-tests-dir-hook
python3.14-snapgene-reader-0.1.23> Sourcing python-catch-conflicts-hook.sh
python3.14-snapgene-reader-0.1.23> Sourcing python-remove-bin-bytecode-hook.sh
python3.14-snapgene-reader-0.1.23> Sourcing pypa-build-hook
python3.14-snapgene-reader-0.1.23> Using pypaBuildPhase
python3.14-snapgene-reader-0.1.23> Sourcing python-runtime-deps-check-hook
python3.14-snapgene-reader-0.1.23> Using pythonRuntimeDepsCheckHook
python3.14-snapgene-reader-0.1.23> Sourcing pypa-install-hook
python3.14-snapgene-reader-0.1.23> Using pypaInstallPhase
python3.14-snapgene-reader-0.1.23> Sourcing python-imports-check-hook.sh
python3.14-snapgene-reader-0.1.23> Using pythonImportsCheckPhase
python3.14-snapgene-reader-0.1.23> Sourcing python-metadata-check-hook.sh
python3.14-snapgene-reader-0.1.23> Using pythonMetadataCheckPhase
python3.14-snapgene-reader-0.1.23> Sourcing python-namespaces-hook
python3.14-snapgene-reader-0.1.23> Sourcing python-catch-conflicts-hook.sh
python3.14-snapgene-reader-0.1.23> Sourcing pytest-check-hook
python3.14-snapgene-reader-0.1.23> Using pytestCheckPhase
python3.14-snapgene-reader-0.1.23> Using checkPhaseThreadLimitHook
python3.14-snapgene-reader-0.1.23> Running phase: unpackPhase
python3.14-snapgene-reader-0.1.23> unpacking source archive /nix/store/ki24qyjvmzxraphqlbnh2hvfgx8d55w0-source
python3.14-snapgene-reader-0.1.23> source root is source
python3.14-snapgene-reader-0.1.23> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/test_samples/test_with_a_single_feature_ie_no_features_list.dna"
python3.14-snapgene-reader-0.1.23> Running phase: patchPhase
python3.14-snapgene-reader-0.1.23> Running phase: updateAutotoolsGnuConfigScriptsPhase
python3.14-snapgene-reader-0.1.23> Running phase: configurePhase
python3.14-snapgene-reader-0.1.23> no configure script, doing nothing
python3.14-snapgene-reader-0.1.23> Running phase: buildPhase
python3.14-snapgene-reader-0.1.23> Executing pypaBuildPhase
python3.14-snapgene-reader-0.1.23> Creating a wheel...
python3.14-snapgene-reader-0.1.23> pypa build flags: --no-isolation --outdir dist/ --wheel
python3.14-snapgene-reader-0.1.23> * Getting build dependencies for wheel...
python3.14-snapgene-reader-0.1.23> running egg_info
python3.14-snapgene-reader-0.1.23> creating snapgene_reader.egg-info
python3.14-snapgene-reader-0.1.23> writing snapgene_reader.egg-info/PKG-INFO
python3.14-snapgene-reader-0.1.23> writing dependency_links to snapgene_reader.egg-info/dependency_links.txt
python3.14-snapgene-reader-0.1.23> writing requirements to snapgene_reader.egg-info/requires.txt
python3.14-snapgene-reader-0.1.23> writing top-level names to snapgene_reader.egg-info/top_level.txt
python3.14-snapgene-reader-0.1.23> writing manifest file 'snapgene_reader.egg-info/SOURCES.txt'
python3.14-snapgene-reader-0.1.23> reading manifest file 'snapgene_reader.egg-info/SOURCES.txt'
python3.14-snapgene-reader-0.1.23> adding license file 'LICENSE'
python3.14-snapgene-reader-0.1.23> writing manifest file 'snapgene_reader.egg-info/SOURCES.txt'
python3.14-snapgene-reader-0.1.23> * Building wheel...
python3.14-snapgene-reader-0.1.23> running bdist_wheel
python3.14-snapgene-reader-0.1.23> running build
python3.14-snapgene-reader-0.1.23> running build_py
python3.14-snapgene-reader-0.1.23> creating build/lib/snapgene_reader
python3.14-snapgene-reader-0.1.23> copying snapgene_reader/__init__.py -> build/lib/snapgene_reader
python3.14-snapgene-reader-0.1.23> copying snapgene_reader/snapgene_reader.py -> build/lib/snapgene_reader
python3.14-snapgene-reader-0.1.23> copying snapgene_reader/version.py -> build/lib/snapgene_reader
python3.14-snapgene-reader-0.1.23> running egg_info
python3.14-snapgene-reader-0.1.23> writing snapgene_reader.egg-info/PKG-INFO
python3.14-snapgene-reader-0.1.23> writing dependency_links to snapgene_reader.egg-info/dependency_links.txt
python3.14-snapgene-reader-0.1.23> writing requirements to snapgene_reader.egg-info/requires.txt
python3.14-snapgene-reader-0.1.23> writing top-level names to snapgene_reader.egg-info/top_level.txt
python3.14-snapgene-reader-0.1.23> reading manifest file 'snapgene_reader.egg-info/SOURCES.txt'
python3.14-snapgene-reader-0.1.23> adding license file 'LICENSE'
python3.14-snapgene-reader-0.1.23> writing manifest file 'snapgene_reader.egg-info/SOURCES.txt'
python3.14-snapgene-reader-0.1.23> installing to build/bdist.linux-x86_64/wheel
python3.14-snapgene-reader-0.1.23> running install
python3.14-snapgene-reader-0.1.23> running install_lib
python3.14-snapgene-reader-0.1.23> creating build/bdist.linux-x86_64/wheel
python3.14-snapgene-reader-0.1.23> creating build/bdist.linux-x86_64/wheel/snapgene_reader
python3.14-snapgene-reader-0.1.23> copying build/lib/snapgene_reader/__init__.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader
python3.14-snapgene-reader-0.1.23> copying build/lib/snapgene_reader/snapgene_reader.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader
python3.14-snapgene-reader-0.1.23> copying build/lib/snapgene_reader/version.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader
python3.14-snapgene-reader-0.1.23> running install_egg_info
python3.14-snapgene-reader-0.1.23> Copying snapgene_reader.egg-info to build/bdist.linux-x86_64/wheel/./snapgene_reader-0.1.23-py3.14.egg-info
python3.14-snapgene-reader-0.1.23> running install_scripts
python3.14-snapgene-reader-0.1.23> creating build/bdist.linux-x86_64/wheel/snapgene_reader-0.1.23.dist-info/WHEEL
python3.14-snapgene-reader-0.1.23> creating '/build/source/dist/.tmp-l0qtmeez/snapgene_reader-0.1.23-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader/__init__.py'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader/snapgene_reader.py'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader/version.py'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/licenses/LICENSE'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/METADATA'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/WHEEL'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/top_level.txt'
python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/RECORD'
python3.14-snapgene-reader-0.1.23> removing build/bdist.linux-x86_64/wheel
python3.14-snapgene-reader-0.1.23> Successfully built snapgene_reader-0.1.23-py3-none-any.whl
python3.14-snapgene-reader-0.1.23> Finished creating a wheel...
python3.14-snapgene-reader-0.1.23> Finished executing pypaBuildPhase
python3.14-snapgene-reader-0.1.23> Running phase: pythonRuntimeDepsCheckHook
python3.14-snapgene-reader-0.1.23> Executing pythonRuntimeDepsCheck
python3.14-snapgene-reader-0.1.23> Checking runtime dependencies for snapgene_reader-0.1.23-py3-none-any.whl
python3.14-snapgene-reader-0.1.23> Finished executing pythonRuntimeDepsCheck
python3.14-snapgene-reader-0.1.23> Running phase: installPhase
python3.14-snapgene-reader-0.1.23> Executing pypaInstallPhase
python3.14-snapgene-reader-0.1.23> Successfully installed snapgene_reader-0.1.23-py3-none-any.whl
python3.14-snapgene-reader-0.1.23> Finished executing pypaInstallPhase
python3.14-snapgene-reader-0.1.23> Running phase: pythonOutputDistPhase
python3.14-snapgene-reader-0.1.23> Executing pythonOutputDistPhase
python3.14-snapgene-reader-0.1.23> Finished executing pythonOutputDistPhase
python3.14-snapgene-reader-0.1.23> Running phase: fixupPhase
python3.14-snapgene-reader-0.1.23> shrinking RPATHs of ELF executables and libraries in /nix/store/0w0xcwsq6hidmdf4q9hj4436f3jgfl4y-python3.14-snapgene-reader-0.1.23
python3.14-snapgene-reader-0.1.23> checking for references to /build/ in /nix/store/0w0xcwsq6hidmdf4q9hj4436f3jgfl4y-python3.14-snapgene-reader-0.1.23...
python3.14-snapgene-reader-0.1.23> patching script interpreter paths in /nix/store/0w0xcwsq6hidmdf4q9hj4436f3jgfl4y-python3.14-snapgene-reader-0.1.23
python3.14-snapgene-reader-0.1.23> stripping (with command strip and flags -S -p) in /nix/store/0w0xcwsq6hidmdf4q9hj4436f3jgfl4y-python3.14-snapgene-reader-0.1.23/lib
python3.14-snapgene-reader-0.1.23> shrinking RPATHs of ELF executables and libraries in /nix/store/y34j5sd9asxz6q2m2wdyccbfl6hnrxiw-python3.14-snapgene-reader-0.1.23-dist
python3.14-snapgene-reader-0.1.23> checking for references to /build/ in /nix/store/y34j5sd9asxz6q2m2wdyccbfl6hnrxiw-python3.14-snapgene-reader-0.1.23-dist...
python3.14-snapgene-reader-0.1.23> patching script interpreter paths in /nix/store/y34j5sd9asxz6q2m2wdyccbfl6hnrxiw-python3.14-snapgene-reader-0.1.23-dist
python3.14-snapgene-reader-0.1.23> Executing pythonRemoveTestsDir
python3.14-snapgene-reader-0.1.23> Finished executing pythonRemoveTestsDir
python3.14-snapgene-reader-0.1.23> Running phase: installCheckPhase
python3.14-snapgene-reader-0.1.23> setting known thread variables to default: 1
python3.14-snapgene-reader-0.1.23>  OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1
python3.14-snapgene-reader-0.1.23> no Makefile or custom installCheckPhase, doing nothing
python3.14-snapgene-reader-0.1.23> Running phase: pythonCatchConflictsPhase
python3.14-snapgene-reader-0.1.23> Running phase: pythonRemoveBinBytecodePhase
python3.14-snapgene-reader-0.1.23> Running phase: pythonImportsCheckPhase
python3.14-snapgene-reader-0.1.23> Executing pythonImportsCheckPhase
python3.14-snapgene-reader-0.1.23> Check whether the following modules can be imported: snapgene_reader
python3.14-snapgene-reader-0.1.23> Running phase: pythonMetadataCheckPhase
python3.14-snapgene-reader-0.1.23> Executing pythonMetadataCheckPhase
python3.14-snapgene-reader-0.1.23> Running phase: pytestCheckPhase
python3.14-snapgene-reader-0.1.23> Executing pytestCheckPhase
python3.14-snapgene-reader-0.1.23> setting known thread variables to default: 1
python3.14-snapgene-reader-0.1.23>  OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1
python3.14-snapgene-reader-0.1.23> pytest flags: -m pytest tests
python3.14-snapgene-reader-0.1.23> ============================= test session starts ==============================
python3.14-snapgene-reader-0.1.23> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0
python3.14-snapgene-reader-0.1.23> rootdir: /build/source
python3.14-snapgene-reader-0.1.23> configfile: pyproject.toml
python3.14-snapgene-reader-0.1.23> collected 2 items                                                              
python3.14-snapgene-reader-0.1.23> 
python3.14-snapgene-reader-0.1.23> tests/test_general.py ..                                                 [100%]
python3.14-snapgene-reader-0.1.23> 
python3.14-snapgene-reader-0.1.23> =============================== warnings summary ===============================
python3.14-snapgene-reader-0.1.23> tests/test_general.py::test_snapgene_file_to_gbk
python3.14-snapgene-reader-0.1.23>   /nix/store/5fry549nh6y277i5h8c6gsd5f1sx27vy-python3.14-biopython-1.86/lib/python3.14/site-packages/Bio/GenBank/__init__.py:724: BiopythonParserWarning: negative starting position in feature location '0..4'; setting feature location to None.
python3.14-snapgene-reader-0.1.23>     warnings.warn(
python3.14-snapgene-reader-0.1.23> 
python3.14-snapgene-reader-0.1.23> tests/test_general.py::test_snapgene_file_to_gbk
python3.14-snapgene-reader-0.1.23>   /nix/store/5fry549nh6y277i5h8c6gsd5f1sx27vy-python3.14-biopython-1.86/lib/python3.14/site-packages/Bio/GenBank/__init__.py:724: BiopythonParserWarning: negative starting position in feature location '0..225'; setting feature location to None.
python3.14-snapgene-reader-0.1.23>     warnings.warn(
python3.14-snapgene-reader-0.1.23> 
python3.14-snapgene-reader-0.1.23> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
python3.14-snapgene-reader-0.1.23> ======================== 2 passed, 2 warnings in 0.17s =========================
python3.14-snapgene-reader-0.1.23> Finished executing pytestCheckPhase
python3.14-snapgene-reader-0.1.23> Running phase: pytestcachePhase
python3.14-snapgene-reader-0.1.23> Running phase: pytestRemoveBytecodePhase

post-build step Route build to niks3: ok
Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org
time=2026-10-02T20:42:27.807+09:00 level=INFO msg="All 1 paths already cached"