python3.14-biotite-1.7.1
checks.x86_64-linux.pkgs-biotite
· build #87
· raw
1Sourcing python-remove-tests-dir-hook2Sourcing python-catch-conflicts-hook.sh3Sourcing python-remove-bin-bytecode-hook.sh4Sourcing pypa-build-hook5Using pypaBuildPhase6Sourcing python-runtime-deps-check-hook7Using pythonRuntimeDepsCheckHook8Sourcing pypa-install-hook9Using pypaInstallPhase10Sourcing python-imports-check-hook.sh11Using pythonImportsCheckPhase12Sourcing python-metadata-check-hook.sh13Using pythonMetadataCheckPhase14Sourcing python-namespaces-hook15Sourcing python-catch-conflicts-hook.sh16Sourcing setuptools-rust-hook17Using checkPhaseThreadLimitHook
unpackPhase
18unpacking source archive /nix/store/aa831ygkbmvxv42nkc86z3zqsk5hgkcb-source19source root is source20Executing cargoSetupPostUnpackHook21Finished cargoSetupPostUnpackHook22setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/util.py"patchPhase
23Executing cargoSetupPostPatchHook24Validating consistency between /build/source/Cargo.lock and /build/biotite-1.7.1-vendor-vendor/Cargo.lock25Finished cargoSetupPostPatchHookconfigurePhase
26no configure script, doing nothingbuildPhase
27Executing pypaBuildPhase28Including all tracked files automatically29Creating a wheel...30pypa build flags: --no-isolation --outdir dist/ --wheel31* Getting build dependencies for wheel...32/nix/store/gyficbimx12q5975523ps3kjzz8ys4pq-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:483: SetuptoolsDeprecationWarning: Cannot find any files for the given pattern.33!!3435 ********************************************************************************36 Pattern 'THIRDPARTY.yml' did not match any files.3738 By 2027-Feb-18, you need to update your project and remove deprecated calls39 or your builds will no longer be supported.40 ********************************************************************************4142!!43 for path in sorted(cls._find_pattern(pattern, enforce_match))44running egg_info45creating src/biotite.egg-info46writing src/biotite.egg-info/PKG-INFO47writing dependency_links to src/biotite.egg-info/dependency_links.txt48writing requirements to src/biotite.egg-info/requires.txt49writing top-level names to src/biotite.egg-info/top_level.txt50writing manifest file 'src/biotite.egg-info/SOURCES.txt'51/nix/store/civ4mq77knscdy5nqcmbz24zdr4hqxbm-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.52 return get_active_overrides().subprocess_timeout53reading manifest file 'src/biotite.egg-info/SOURCES.txt'54reading manifest template 'MANIFEST.in'55warning: no files found matching 'src/biotite/structure/info/components.bcif'56adding license file 'LICENSE.rst'57writing manifest file 'src/biotite.egg-info/SOURCES.txt'58* Building wheel...59[ 1/14] Cythonizing src/biotite/sequence/align/banded.pyx60[ 2/14] Cythonizing src/biotite/sequence/align/kmeralphabet.pyx61[ 3/14] Cythonizing src/biotite/sequence/align/kmersimilarity.pyx62[ 4/14] Cythonizing src/biotite/sequence/align/kmertable.pyx63[ 5/14] Cythonizing src/biotite/sequence/align/localgapped.pyx64[ 6/14] Cythonizing src/biotite/sequence/align/localungapped.pyx65performance hint: src/biotite/sequence/align/localungapped.pyx:202:37: Index should be typed for more efficient access66performance hint: src/biotite/sequence/align/localungapped.pyx:202:56: Index should be typed for more efficient access67[ 7/14] Cythonizing src/biotite/sequence/align/multiple.pyx68[ 8/14] Cythonizing src/biotite/sequence/align/pairwise.pyx69[ 9/14] Cythonizing src/biotite/sequence/align/permutation.pyx70[10/14] Cythonizing src/biotite/sequence/align/selector.pyx71[11/14] Cythonizing src/biotite/sequence/align/tracetable.pyx72[12/14] Cythonizing src/biotite/sequence/phylo/nj.pyx73[13/14] Cythonizing src/biotite/sequence/phylo/tree.pyx74[14/14] Cythonizing src/biotite/sequence/phylo/upgma.pyx75/nix/store/gyficbimx12q5975523ps3kjzz8ys4pq-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:483: SetuptoolsDeprecationWarning: Cannot find any files for the given pattern.76!!7778 ********************************************************************************79 Pattern 'THIRDPARTY.yml' did not match any files.8081 By 2027-Feb-18, you need to update your project and remove deprecated calls82 or your builds will no longer be supported.83 ********************************************************************************8485!!86 for path in sorted(cls._find_pattern(pattern, enforce_match))87running bdist_wheel88running build89running build_py90creating build/lib.linux-x86_64-cpython-314/biotite91copying src/biotite/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite92copying src/biotite/copyable.py -> build/lib.linux-x86_64-cpython-314/biotite93copying src/biotite/file.py -> build/lib.linux-x86_64-cpython-314/biotite94copying src/biotite/setup_ccd.py -> build/lib.linux-x86_64-cpython-314/biotite95copying src/biotite/typing.py -> build/lib.linux-x86_64-cpython-314/biotite96copying src/biotite/visualize.py -> build/lib.linux-x86_64-cpython-314/biotite97copying src/biotite/version.py -> build/lib.linux-x86_64-cpython-314/biotite98creating build/lib.linux-x86_64-cpython-314/biotite/interface99copying src/biotite/interface/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface100copying src/biotite/interface/version.py -> build/lib.linux-x86_64-cpython-314/biotite/interface101copying src/biotite/interface/warning.py -> build/lib.linux-x86_64-cpython-314/biotite/interface102creating build/lib.linux-x86_64-cpython-314/biotite/sequence103copying src/biotite/sequence/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence104copying src/biotite/sequence/alphabet.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence105copying src/biotite/sequence/annotation.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence106copying src/biotite/sequence/codon.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence107copying src/biotite/sequence/profile.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence108copying src/biotite/sequence/search.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence109copying src/biotite/sequence/seqtypes.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence110copying src/biotite/sequence/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence111creating build/lib.linux-x86_64-cpython-314/biotite/structure112copying src/biotite/structure/superimpose.py -> build/lib.linux-x86_64-cpython-314/biotite/structure113copying src/biotite/structure/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure114copying src/biotite/structure/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure115copying src/biotite/structure/basepairs.py -> build/lib.linux-x86_64-cpython-314/biotite/structure116copying src/biotite/structure/bonds.py -> build/lib.linux-x86_64-cpython-314/biotite/structure117copying src/biotite/structure/box.py -> build/lib.linux-x86_64-cpython-314/biotite/structure118copying src/biotite/structure/celllist.py -> build/lib.linux-x86_64-cpython-314/biotite/structure119copying src/biotite/structure/chains.py -> build/lib.linux-x86_64-cpython-314/biotite/structure120copying src/biotite/structure/charges.py -> build/lib.linux-x86_64-cpython-314/biotite/structure121copying src/biotite/structure/compare.py -> build/lib.linux-x86_64-cpython-314/biotite/structure122copying src/biotite/structure/connect.py -> build/lib.linux-x86_64-cpython-314/biotite/structure123copying src/biotite/structure/density.py -> build/lib.linux-x86_64-cpython-314/biotite/structure124copying src/biotite/structure/dotbracket.py -> build/lib.linux-x86_64-cpython-314/biotite/structure125copying src/biotite/structure/error.py -> build/lib.linux-x86_64-cpython-314/biotite/structure126copying src/biotite/structure/filter.py -> build/lib.linux-x86_64-cpython-314/biotite/structure127copying src/biotite/structure/geometry.py -> build/lib.linux-x86_64-cpython-314/biotite/structure128copying src/biotite/structure/hbond.py -> build/lib.linux-x86_64-cpython-314/biotite/structure129copying src/biotite/structure/integrity.py -> build/lib.linux-x86_64-cpython-314/biotite/structure130copying src/biotite/structure/mechanics.py -> build/lib.linux-x86_64-cpython-314/biotite/structure131copying src/biotite/structure/molecules.py -> build/lib.linux-x86_64-cpython-314/biotite/structure132copying src/biotite/structure/pseudoknots.py -> build/lib.linux-x86_64-cpython-314/biotite/structure133copying src/biotite/structure/rdf.py -> build/lib.linux-x86_64-cpython-314/biotite/structure134copying src/biotite/structure/repair.py -> build/lib.linux-x86_64-cpython-314/biotite/structure135copying src/biotite/structure/residues.py -> build/lib.linux-x86_64-cpython-314/biotite/structure136copying src/biotite/structure/rings.py -> build/lib.linux-x86_64-cpython-314/biotite/structure137copying src/biotite/structure/sasa.py -> build/lib.linux-x86_64-cpython-314/biotite/structure138copying src/biotite/structure/segments.py -> build/lib.linux-x86_64-cpython-314/biotite/structure139copying src/biotite/structure/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/structure140copying src/biotite/structure/sse.py -> build/lib.linux-x86_64-cpython-314/biotite/structure141copying src/biotite/structure/tm.py -> build/lib.linux-x86_64-cpython-314/biotite/structure142copying src/biotite/structure/transform.py -> build/lib.linux-x86_64-cpython-314/biotite/structure143copying src/biotite/structure/util.py -> build/lib.linux-x86_64-cpython-314/biotite/structure144creating build/lib.linux-x86_64-cpython-314/biotite/application145copying src/biotite/application/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application146copying src/biotite/application/application.py -> build/lib.linux-x86_64-cpython-314/biotite/application147copying src/biotite/application/localapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application148copying src/biotite/application/msaapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application149copying src/biotite/application/util.py -> build/lib.linux-x86_64-cpython-314/biotite/application150copying src/biotite/application/webapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application151creating build/lib.linux-x86_64-cpython-314/biotite/database152copying src/biotite/database/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database153copying src/biotite/database/error.py -> build/lib.linux-x86_64-cpython-314/biotite/database154creating build/lib.linux-x86_64-cpython-314/biotite/interface/openmm155copying src/biotite/interface/openmm/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm156copying src/biotite/interface/openmm/state.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm157copying src/biotite/interface/openmm/system.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm158creating build/lib.linux-x86_64-cpython-314/biotite/interface/pymol159copying src/biotite/interface/pymol/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol160copying src/biotite/interface/pymol/cgo.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol161copying src/biotite/interface/pymol/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol162copying src/biotite/interface/pymol/display.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol163copying src/biotite/interface/pymol/object.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol164copying src/biotite/interface/pymol/shapes.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol165copying src/biotite/interface/pymol/startup.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol166creating build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit167copying src/biotite/interface/rdkit/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit168copying src/biotite/interface/rdkit/mol.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit169creating build/lib.linux-x86_64-cpython-314/biotite/sequence/align170copying src/biotite/sequence/align/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align171copying src/biotite/sequence/align/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align172copying src/biotite/sequence/align/buckets.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align173copying src/biotite/sequence/align/cigar.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align174copying src/biotite/sequence/align/matrix.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align175copying src/biotite/sequence/align/statistics.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align176creating build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics177copying src/biotite/sequence/graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics178copying src/biotite/sequence/graphics/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics179copying src/biotite/sequence/graphics/colorschemes.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics180copying src/biotite/sequence/graphics/dendrogram.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics181copying src/biotite/sequence/graphics/features.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics182copying src/biotite/sequence/graphics/logo.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics183copying src/biotite/sequence/graphics/plasmid.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics184creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io185copying src/biotite/sequence/io/general.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io186copying src/biotite/sequence/io/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io187creating build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo188copying src/biotite/sequence/phylo/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo189creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal190copying src/biotite/sequence/io/clustal/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal191copying src/biotite/sequence/io/clustal/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal192copying src/biotite/sequence/io/clustal/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal193creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta194copying src/biotite/sequence/io/fasta/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta195copying src/biotite/sequence/io/fasta/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta196copying src/biotite/sequence/io/fasta/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta197creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq198copying src/biotite/sequence/io/fastq/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq199copying src/biotite/sequence/io/fastq/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq200copying src/biotite/sequence/io/fastq/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq201creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank202copying src/biotite/sequence/io/genbank/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank203copying src/biotite/sequence/io/genbank/annotation.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank204copying src/biotite/sequence/io/genbank/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank205copying src/biotite/sequence/io/genbank/metadata.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank206copying src/biotite/sequence/io/genbank/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank207creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff208copying src/biotite/sequence/io/gff/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff209copying src/biotite/sequence/io/gff/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff210copying src/biotite/sequence/io/gff/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff211creating build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet212copying src/biotite/structure/alphabet/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet213copying src/biotite/structure/alphabet/encoder.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet214copying src/biotite/structure/alphabet/i3d.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet215copying src/biotite/structure/alphabet/layers.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet216copying src/biotite/structure/alphabet/pb.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet217copying src/biotite/structure/alphabet/unkerasify.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet218creating build/lib.linux-x86_64-cpython-314/biotite/structure/graphics219copying src/biotite/structure/graphics/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics220copying src/biotite/structure/graphics/rna.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics221copying src/biotite/structure/graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics222creating build/lib.linux-x86_64-cpython-314/biotite/structure/info223copying src/biotite/structure/info/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info224copying src/biotite/structure/info/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info225copying src/biotite/structure/info/bonds.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info226copying src/biotite/structure/info/ccd.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info227copying src/biotite/structure/info/groups.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info228copying src/biotite/structure/info/masses.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info229copying src/biotite/structure/info/misc.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info230copying src/biotite/structure/info/radii.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info231copying src/biotite/structure/info/standardize.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info232creating build/lib.linux-x86_64-cpython-314/biotite/structure/io233copying src/biotite/structure/io/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io234copying src/biotite/structure/io/general.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io235copying src/biotite/structure/io/trajfile.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io236copying src/biotite/structure/io/util.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io237creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd238copying src/biotite/structure/io/dcd/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd239copying src/biotite/structure/io/dcd/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd240creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro241copying src/biotite/structure/io/gro/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro242copying src/biotite/structure/io/gro/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro243creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol244copying src/biotite/structure/io/mol/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol245copying src/biotite/structure/io/mol/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol246copying src/biotite/structure/io/mol/ctab.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol247copying src/biotite/structure/io/mol/header.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol248copying src/biotite/structure/io/mol/mol.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol249copying src/biotite/structure/io/mol/sdf.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol250creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf251copying src/biotite/structure/io/netcdf/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf252copying src/biotite/structure/io/netcdf/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf253creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb254copying src/biotite/structure/io/pdb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb255copying src/biotite/structure/io/pdb/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb256copying src/biotite/structure/io/pdb/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb257creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt258copying src/biotite/structure/io/pdbqt/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt259copying src/biotite/structure/io/pdbqt/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt260copying src/biotite/structure/io/pdbqt/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt261creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx262copying src/biotite/structure/io/pdbx/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx263copying src/biotite/structure/io/pdbx/bcif.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx264copying src/biotite/structure/io/pdbx/cif.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx265copying src/biotite/structure/io/pdbx/component.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx266copying src/biotite/structure/io/pdbx/compress.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx267copying src/biotite/structure/io/pdbx/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx268copying src/biotite/structure/io/pdbx/encoding.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx269creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr270copying src/biotite/structure/io/trr/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr271copying src/biotite/structure/io/trr/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr272creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc273copying src/biotite/structure/io/xtc/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc274copying src/biotite/structure/io/xtc/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc275creating build/lib.linux-x86_64-cpython-314/biotite/application/autodock276copying src/biotite/application/autodock/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/autodock277copying src/biotite/application/autodock/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/autodock278creating build/lib.linux-x86_64-cpython-314/biotite/application/blast279copying src/biotite/application/blast/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast280copying src/biotite/application/blast/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast281copying src/biotite/application/blast/webapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast282creating build/lib.linux-x86_64-cpython-314/biotite/application/clustalo283copying src/biotite/application/clustalo/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/clustalo284copying src/biotite/application/clustalo/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/clustalo285creating build/lib.linux-x86_64-cpython-314/biotite/application/dssp286copying src/biotite/application/dssp/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/dssp287copying src/biotite/application/dssp/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/dssp288creating build/lib.linux-x86_64-cpython-314/biotite/application/mafft289copying src/biotite/application/mafft/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/mafft290copying src/biotite/application/mafft/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/mafft291creating build/lib.linux-x86_64-cpython-314/biotite/application/muscle292copying src/biotite/application/muscle/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle293copying src/biotite/application/muscle/app3.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle294copying src/biotite/application/muscle/app5.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle295creating build/lib.linux-x86_64-cpython-314/biotite/application/sra296copying src/biotite/application/sra/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/sra297copying src/biotite/application/sra/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/sra298creating build/lib.linux-x86_64-cpython-314/biotite/application/tantan299copying src/biotite/application/tantan/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/tantan300copying src/biotite/application/tantan/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/tantan301creating build/lib.linux-x86_64-cpython-314/biotite/application/viennarna302copying src/biotite/application/viennarna/rnaalifold.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna303copying src/biotite/application/viennarna/rnafold.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna304copying src/biotite/application/viennarna/rnaplot.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna305copying src/biotite/application/viennarna/util.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna306copying src/biotite/application/viennarna/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna307creating build/lib.linux-x86_64-cpython-314/biotite/database/uniprot308copying src/biotite/database/uniprot/check.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot309copying src/biotite/database/uniprot/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot310copying src/biotite/database/uniprot/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot311copying src/biotite/database/uniprot/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot312creating build/lib.linux-x86_64-cpython-314/biotite/database/afdb313copying src/biotite/database/afdb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/afdb314copying src/biotite/database/afdb/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/afdb315creating build/lib.linux-x86_64-cpython-314/biotite/database/entrez316copying src/biotite/database/entrez/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez317copying src/biotite/database/entrez/check.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez318copying src/biotite/database/entrez/dbnames.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez319copying src/biotite/database/entrez/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez320copying src/biotite/database/entrez/key.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez321copying src/biotite/database/entrez/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez322creating build/lib.linux-x86_64-cpython-314/biotite/database/pubchem323copying src/biotite/database/pubchem/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem324copying src/biotite/database/pubchem/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem325copying src/biotite/database/pubchem/error.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem326copying src/biotite/database/pubchem/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem327copying src/biotite/database/pubchem/throttle.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem328creating build/lib.linux-x86_64-cpython-314/biotite/database/rcsb329copying src/biotite/database/rcsb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb330copying src/biotite/database/rcsb/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb331copying src/biotite/database/rcsb/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb332running egg_info333writing src/biotite.egg-info/PKG-INFO334writing dependency_links to src/biotite.egg-info/dependency_links.txt335writing requirements to src/biotite.egg-info/requires.txt336writing top-level names to src/biotite.egg-info/top_level.txt337/nix/store/civ4mq77knscdy5nqcmbz24zdr4hqxbm-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.338 return get_active_overrides().subprocess_timeout339reading manifest file 'src/biotite.egg-info/SOURCES.txt'340reading manifest template 'MANIFEST.in'341warning: no files found matching 'src/biotite/structure/info/components.bcif'342adding license file 'LICENSE.rst'343writing manifest file 'src/biotite.egg-info/SOURCES.txt'344creating build/lib.linux-x86_64-cpython-314/rust345copying src/rust/lib.rs -> build/lib.linux-x86_64-cpython-314/rust346copying src/rust/util.rs -> build/lib.linux-x86_64-cpython-314/rust347copying src/biotite/py.typed -> build/lib.linux-x86_64-cpython-314/biotite348creating build/lib.linux-x86_64-cpython-314/rust/sequence349copying src/rust/sequence/codec.rs -> build/lib.linux-x86_64-cpython-314/rust/sequence350copying src/rust/sequence/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/sequence351creating build/lib.linux-x86_64-cpython-314/rust/structure352copying src/rust/structure/bonds.rs -> build/lib.linux-x86_64-cpython-314/rust/structure353copying src/rust/structure/celllist.rs -> build/lib.linux-x86_64-cpython-314/rust/structure354copying src/rust/structure/charges.rs -> build/lib.linux-x86_64-cpython-314/rust/structure355copying src/rust/structure/connect.rs -> build/lib.linux-x86_64-cpython-314/rust/structure356copying src/rust/structure/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure357copying src/rust/structure/sasa.rs -> build/lib.linux-x86_64-cpython-314/rust/structure358copying src/rust/structure/util.rs -> build/lib.linux-x86_64-cpython-314/rust/structure359creating build/lib.linux-x86_64-cpython-314/rust/structure/io360copying src/rust/structure/io/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io361creating build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb362copying src/rust/structure/io/pdb/file.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb363copying src/rust/structure/io/pdb/hybrid36.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb364copying src/rust/structure/io/pdb/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb365creating build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx366copying src/rust/structure/io/pdbx/encoding.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx367copying src/rust/structure/io/pdbx/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx368copying src/biotite/sequence/codon_tables.txt -> build/lib.linux-x86_64-cpython-314/biotite/sequence369copying src/biotite/structure/atoms.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure370copying src/biotite/structure/bonds.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure371copying src/biotite/structure/celllist.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure372copying src/biotite/structure/spacegroups.json -> build/lib.linux-x86_64-cpython-314/biotite/structure373copying src/biotite/structure/spacegroups.license -> build/lib.linux-x86_64-cpython-314/biotite/structure374copying src/biotite/sequence/align/banded.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align375copying src/biotite/sequence/align/banded.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align376copying src/biotite/sequence/align/banded.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align377copying src/biotite/sequence/align/kmeralphabet.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align378copying src/biotite/sequence/align/kmeralphabet.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align379copying src/biotite/sequence/align/kmeralphabet.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align380copying src/biotite/sequence/align/kmersimilarity.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align381copying src/biotite/sequence/align/kmersimilarity.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align382copying src/biotite/sequence/align/kmersimilarity.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align383copying src/biotite/sequence/align/kmertable.cpp -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align384copying src/biotite/sequence/align/kmertable.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align385copying src/biotite/sequence/align/kmertable.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align386copying src/biotite/sequence/align/localgapped.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align387copying src/biotite/sequence/align/localgapped.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align388copying src/biotite/sequence/align/localgapped.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align389copying src/biotite/sequence/align/localungapped.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align390copying src/biotite/sequence/align/localungapped.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align391copying src/biotite/sequence/align/localungapped.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align392copying src/biotite/sequence/align/multiple.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align393copying src/biotite/sequence/align/multiple.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align394copying src/biotite/sequence/align/multiple.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align395copying src/biotite/sequence/align/pairwise.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align396copying src/biotite/sequence/align/pairwise.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align397copying src/biotite/sequence/align/pairwise.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align398copying src/biotite/sequence/align/permutation.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align399copying src/biotite/sequence/align/permutation.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align400copying src/biotite/sequence/align/permutation.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align401copying src/biotite/sequence/align/primes.txt -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align402copying src/biotite/sequence/align/selector.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align403copying src/biotite/sequence/align/selector.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align404copying src/biotite/sequence/align/selector.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align405copying src/biotite/sequence/align/tracetable.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align406copying src/biotite/sequence/align/tracetable.pxd -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align407copying src/biotite/sequence/align/tracetable.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align408copying src/biotite/sequence/phylo/nj.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo409copying src/biotite/sequence/phylo/nj.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo410copying src/biotite/sequence/phylo/nj.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo411copying src/biotite/sequence/phylo/tree.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo412copying src/biotite/sequence/phylo/tree.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo413copying src/biotite/sequence/phylo/tree.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo414copying src/biotite/sequence/phylo/upgma.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo415copying src/biotite/sequence/phylo/upgma.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo416copying src/biotite/sequence/phylo/upgma.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo417creating build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data418copying src/biotite/sequence/align/matrix_data/3Di.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data419copying src/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data420copying src/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data421copying src/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data422copying src/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data423copying src/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data424copying src/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data425copying src/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data426copying src/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data427copying src/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data428copying src/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data429copying src/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data430copying src/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data431copying src/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data432copying src/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data433copying src/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data434copying src/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data435copying src/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data436copying src/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data437copying src/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data438copying src/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data439copying src/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data440copying src/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data441copying src/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data442copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data443copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data444copying src/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data445copying src/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data446copying src/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data447copying src/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data448copying src/biotite/sequence/align/matrix_data/GONNET.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data449copying src/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data450copying src/biotite/sequence/align/matrix_data/MATCH.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data451copying src/biotite/sequence/align/matrix_data/NUC.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data452copying src/biotite/sequence/align/matrix_data/PAM10.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data453copying src/biotite/sequence/align/matrix_data/PAM100.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data454copying src/biotite/sequence/align/matrix_data/PAM110.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data455copying src/biotite/sequence/align/matrix_data/PAM120.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data456copying src/biotite/sequence/align/matrix_data/PAM130.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data457copying src/biotite/sequence/align/matrix_data/PAM140.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data458copying src/biotite/sequence/align/matrix_data/PAM150.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data459copying src/biotite/sequence/align/matrix_data/PAM160.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data460copying src/biotite/sequence/align/matrix_data/PAM170.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data461copying src/biotite/sequence/align/matrix_data/PAM180.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data462copying src/biotite/sequence/align/matrix_data/PAM190.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data463copying src/biotite/sequence/align/matrix_data/PAM20.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data464copying src/biotite/sequence/align/matrix_data/PAM200.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data465copying src/biotite/sequence/align/matrix_data/PAM210.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data466copying src/biotite/sequence/align/matrix_data/PAM220.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data467copying src/biotite/sequence/align/matrix_data/PAM230.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data468copying src/biotite/sequence/align/matrix_data/PAM240.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data469copying src/biotite/sequence/align/matrix_data/PAM250.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data470copying src/biotite/sequence/align/matrix_data/PAM260.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data471copying src/biotite/sequence/align/matrix_data/PAM270.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data472copying src/biotite/sequence/align/matrix_data/PAM280.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data473copying src/biotite/sequence/align/matrix_data/PAM290.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data474copying src/biotite/sequence/align/matrix_data/PAM30.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data475copying src/biotite/sequence/align/matrix_data/PAM300.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data476copying src/biotite/sequence/align/matrix_data/PAM310.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data477copying src/biotite/sequence/align/matrix_data/PAM320.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data478copying src/biotite/sequence/align/matrix_data/PAM330.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data479copying src/biotite/sequence/align/matrix_data/PAM340.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data480copying src/biotite/sequence/align/matrix_data/PAM350.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data481copying src/biotite/sequence/align/matrix_data/PAM360.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data482copying src/biotite/sequence/align/matrix_data/PAM370.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data483copying src/biotite/sequence/align/matrix_data/PAM380.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data484copying src/biotite/sequence/align/matrix_data/PAM390.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data485copying src/biotite/sequence/align/matrix_data/PAM40.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data486copying src/biotite/sequence/align/matrix_data/PAM400.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data487copying src/biotite/sequence/align/matrix_data/PAM410.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data488copying src/biotite/sequence/align/matrix_data/PAM420.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data489copying src/biotite/sequence/align/matrix_data/PAM430.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data490copying src/biotite/sequence/align/matrix_data/PAM440.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data491copying src/biotite/sequence/align/matrix_data/PAM450.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data492copying src/biotite/sequence/align/matrix_data/PAM460.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data493copying src/biotite/sequence/align/matrix_data/PAM470.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data494copying src/biotite/sequence/align/matrix_data/PAM480.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data495copying src/biotite/sequence/align/matrix_data/PAM490.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data496copying src/biotite/sequence/align/matrix_data/PAM50.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data497copying src/biotite/sequence/align/matrix_data/PAM500.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data498copying src/biotite/sequence/align/matrix_data/PAM60.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data499copying src/biotite/sequence/align/matrix_data/PAM70.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data500copying src/biotite/sequence/align/matrix_data/PAM80.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data501copying src/biotite/sequence/align/matrix_data/PAM90.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data502copying src/biotite/sequence/align/matrix_data/PB.license -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data503copying src/biotite/sequence/align/matrix_data/PB.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data504copying src/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data505copying src/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data506copying src/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data507copying src/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data508copying src/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data509copying src/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data510creating build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes511copying src/biotite/sequence/graphics/color_schemes/3di_flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes512copying src/biotite/sequence/graphics/color_schemes/autumn.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes513copying src/biotite/sequence/graphics/color_schemes/blossom.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes514copying src/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes515copying src/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes516copying src/biotite/sequence/graphics/color_schemes/flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes517copying src/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes518copying src/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes519copying src/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes520copying src/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes521copying src/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes522copying src/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes523copying src/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes524copying src/biotite/sequence/graphics/color_schemes/ocean.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes525copying src/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes526copying src/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes527copying src/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes528copying src/biotite/sequence/graphics/color_schemes/spring.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes529copying src/biotite/sequence/graphics/color_schemes/sunset.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes530copying src/biotite/sequence/graphics/color_schemes/wither.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes531copying src/biotite/structure/alphabet/encoder_weights_3di.kerasify -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet532copying src/biotite/structure/alphabet/pb.license -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet533copying src/biotite/structure/info/atom_masses.json -> build/lib.linux-x86_64-cpython-314/biotite/structure/info534running build_ext535building 'biotite.sequence.align.banded' extension536creating build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align537gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/banded.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/banded.o538gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/banded.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so539building 'biotite.sequence.align.kmeralphabet' extension540gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmeralphabet.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmeralphabet.o541In file included from src/biotite/sequence/align/kmeralphabet.c:1401:542In function ‘__Pyx_XCLEAR_MEMVIEW’,543 inlined from ‘__pyx_pf_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_20_split’ at src/biotite/sequence/align/kmeralphabet.c:23866:3,544 inlined from ‘__pyx_pw_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_21_split’ at src/biotite/sequence/align/kmeralphabet.c:23574:13:545src/biotite/sequence/align/kmeralphabet.c:1417:46: warning: ‘__atomic_fetch_sub_4’ writing 4 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]546 1417 | #define __pyx_atomic_decr_acq_rel(value) atomic_fetch_sub_explicit(value, 1, memory_order_acq_rel)547 | ^~~~~~~~~~~~~~~~~~~~~~~~~548src/biotite/sequence/align/kmeralphabet.c:1628:13: note: in expansion of macro ‘__pyx_atomic_decr_acq_rel’549 1628 | __pyx_atomic_decr_acq_rel(__pyx_get_slice_count_pointer(memview))550 | ^~~~~~~~~~~~~~~~~~~~~~~~~551src/biotite/sequence/align/kmeralphabet.c:42072:29: note: in expansion of macro ‘__pyx_sub_acquisition_count’55242072 | old_acquisition_count = __pyx_sub_acquisition_count(memview);553 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~554In function ‘__pyx_pw_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_21_split’:555cc1: note: destination object is likely at address zero556gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmeralphabet.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so557building 'biotite.sequence.align.kmersimilarity' extension558gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmersimilarity.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmersimilarity.o559gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmersimilarity.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so560building 'biotite.sequence.align.kmertable' extension561g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmertable.cpp -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmertable.o562g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmertable.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so563building 'biotite.sequence.align.localgapped' extension564gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/localgapped.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localgapped.o565gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localgapped.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so566building 'biotite.sequence.align.localungapped' extension567gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/localungapped.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localungapped.o568gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localungapped.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so569building 'biotite.sequence.align.multiple' extension570gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/multiple.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/multiple.o571gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/multiple.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so572building 'biotite.sequence.align.pairwise' extension573gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/pairwise.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/pairwise.o574gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/pairwise.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so575building 'biotite.sequence.align.permutation' extension576gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/permutation.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/permutation.o577gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/permutation.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so578building 'biotite.sequence.align.selector' extension579gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/selector.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/selector.o580gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/selector.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so581building 'biotite.sequence.align.tracetable' extension582gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/tracetable.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/tracetable.o583gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/tracetable.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so584building 'biotite.sequence.phylo.nj' extension585creating build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo586gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/nj.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/nj.o587gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/nj.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so588building 'biotite.sequence.phylo.tree' extension589gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/tree.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/tree.o590gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/tree.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so591building 'biotite.sequence.phylo.upgma' extension592gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/z14gnqg9yfjdz5728prknaylhsisgmfg-python3.14-numpy-2.5.2/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/upgma.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/upgma.o593gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/upgma.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so594running build_rust595cargo rustc --lib --message-format=json-render-diagnostics --manifest-path Cargo.toml --release -v --features pyo3/extension-module --crate-type cdylib --target x86_64-unknown-linux-gnu596warning: failed to save last-use data597This may prevent cargo from accurately tracking what is being used in its global cache. This information is used for automatically removing unused data in the cache.598599unable to open database file: /homeless-shelter/.cargo/.global-cache600601Caused by:602 Error code 14: unable to open database file603 Compiling target-lexicon v0.13.5604 Compiling autocfg v1.5.1605 Compiling proc-macro2 v1.0.107606 Compiling unicode-ident v1.0.26607 Compiling quote v1.0.47608 Compiling libc v0.2.189609 Compiling heck v0.5.0610 Compiling rawpointer v0.2.1611 Compiling indoc v2.0.7612 Compiling once_cell v1.21.4613 Compiling unindent v0.2.4614 Compiling either v1.18.0615 Compiling rustc-hash v2.1.3616 Compiling smallvec v1.16.2617 Running `rustc --crate-name build_script_build --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=unexpected_cfgs --check-cfg 'cfg(feature, values("rust_1_40", "cargo-clippy"))' -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arch_z80", "arch_zkasm", "default", "serde", "serde_support", "std"))' -C metadata=4db800290b3f50af -C extra-filename=-1923f9b508cf29c4 --out-dir /build/source/target/release/build/target-lexicon-1923f9b508cf29c4 -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`618 Running `rustc --crate-name unicode_ident --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/unicode-ident-1.0.26/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=4b8652dd670bd1a6 -C extra-filename=-c74e3b88548992d2 --out-dir /build/source/target/release/deps -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`619 Running `rustc --crate-name autocfg --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/autocfg-1.5.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=a42ff67ea1ecf2ea -C extra-filename=-283989c93de178b9 --out-dir /build/source/target/release/deps -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`620 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=b4a19042bc764ac7 -C extra-filename=-a1748a63e9060e7c --out-dir /build/source/target/release/build/proc-macro2-a1748a63e9060e7c -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`621 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "proc-macro"))' -C metadata=e50c7694f3d21d8b -C extra-filename=-6ace72b374b83c14 --out-dir /build/source/target/release/build/quote-6ace72b374b83c14 -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`622 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.189/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --allow=unused_qualifications '--warn=clippy::unnecessary_semicolon' '--allow=clippy::unnecessary_cast' '--warn=clippy::ptr_as_ptr' '--allow=clippy::non_minimal_cfg' '--allow=clippy::missing_safety_doc' '--warn=clippy::map_unwrap_or' '--warn=clippy::manual_assert' '--allow=clippy::identity_op' '--warn=clippy::explicit_iter_loop' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=5a1095ba7b270291 -C extra-filename=-cb08787c0a0a2525 --out-dir /build/source/target/release/build/libc-cb08787c0a0a2525 -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`623 Running `rustc --crate-name indoc --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/indoc-2.0.7/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=9b21a8c3e90023e8 -C extra-filename=-2619e51e066ea75a --out-dir /build/source/target/release/deps -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro --cap-lints allow`624 Running `rustc --crate-name once_cell --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/once_cell-1.21.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="alloc"' --cfg 'feature="default"' --cfg 'feature="race"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc", "atomic-polyfill", "critical-section", "default", "parking_lot", "portable-atomic", "race", "std", "unstable"))' -C metadata=e904420e246bdd05 -C extra-filename=-d2de14c4caf3215f --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`625 Running `rustc --crate-name rawpointer --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/rawpointer-0.2.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=0b5fdcbd0a0a82ae -C extra-filename=-321647f79fda5009 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`626 Running `rustc --crate-name heck --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/heck-0.5.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=4a8eb68e89253af7 -C extra-filename=-5aefe23acf6837b5 --out-dir /build/source/target/release/deps -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`627 Running `rustc --crate-name unindent --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/unindent-0.2.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=a8a9c0797fd4a61c -C extra-filename=-bb0db7ca4bb55f80 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`628 Running `rustc --crate-name either --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/either-1.18.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="std"' --cfg 'feature="use_std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "serde", "std", "use_std"))' -C metadata=d5457cca23161e2d -C extra-filename=-1ba43553c129993f --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`629 Running `rustc --crate-name rustc_hash --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/rustc-hash-2.1.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "rand", "std"))' -C metadata=ff3c32daa1e583cd -C extra-filename=-8009794313d47b81 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`630 Running `rustc --crate-name smallvec --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/smallvec-1.16.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arbitrary", "bincode", "const_generics", "const_new", "drain_filter", "drain_keep_rest", "impl_bincode", "malloc_size_of", "may_dangle", "serde", "specialization", "union", "unty", "write"))' -C metadata=1120a3c6cf649104 -C extra-filename=-ae0eb1e0faa58575 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`631 Compiling itertools v0.14.0632 Running `rustc --crate-name itertools --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/itertools-0.14.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="use_alloc"' --cfg 'feature="use_std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "use_alloc", "use_std"))' -C metadata=51ee26b97db92670 -C extra-filename=-42433dbef26eed58 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern either=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libeither-1ba43553c129993f.rmeta --cap-lints allow -Cforce-frame-pointers=yes`633 Running `/build/source/target/release/build/quote-6ace72b374b83c14/build-script-build`634 Compiling num-traits v0.2.19635 Compiling memoffset v0.9.1636 Compiling matrixmultiply v0.3.11637 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="i128"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "libm", "std"))' -C metadata=8b0f568c5c8337ef -C extra-filename=-0381f4606dff5f8d --out-dir /build/source/target/release/build/num-traits-0381f4606dff5f8d -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-283989c93de178b9.rlib --cap-lints allow`638 Running `rustc --crate-name build_script_build --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "unstable_const", "unstable_offset_of"))' -C metadata=58b2679c10c09029 -C extra-filename=-39de7929a8b4be42 --out-dir /build/source/target/release/build/memoffset-39de7929a8b4be42 -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-283989c93de178b9.rlib --cap-lints allow`639 Running `rustc --crate-name build_script_build --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="cgemm"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("avx512", "cgemm", "constconf", "default", "num_cpus", "once_cell", "std", "thread-tree", "threading"))' -C metadata=d2085a0b7c357024 -C extra-filename=-a28e0125945846e2 --out-dir /build/source/target/release/build/matrixmultiply-a28e0125945846e2 -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-283989c93de178b9.rlib --cap-lints allow`640 Running `/build/source/target/release/build/proc-macro2-a1748a63e9060e7c/build-script-build`641 Running `/build/source/target/release/build/libc-cb08787c0a0a2525/build-script-build`642 Running `rustc --crate-name libc --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.189/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --allow=unused_qualifications '--warn=clippy::unnecessary_semicolon' '--allow=clippy::unnecessary_cast' '--warn=clippy::ptr_as_ptr' '--allow=clippy::non_minimal_cfg' '--allow=clippy::missing_safety_doc' '--warn=clippy::map_unwrap_or' '--warn=clippy::manual_assert' '--allow=clippy::identity_op' '--warn=clippy::explicit_iter_loop' --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=3113040664348885 -C extra-filename=-e026cf6eaa02b327 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg freebsd12 --check-cfg 'cfg(emscripten_old_stat_abi)' --check-cfg 'cfg(espidf_picolibc)' --check-cfg 'cfg(espidf_time32)' --check-cfg 'cfg(freebsd10)' --check-cfg 'cfg(freebsd11)' --check-cfg 'cfg(freebsd12)' --check-cfg 'cfg(freebsd13)' --check-cfg 'cfg(freebsd14)' --check-cfg 'cfg(freebsd15)' --check-cfg 'cfg(gnu_file_offset_bits64)' --check-cfg 'cfg(gnu_time_bits64)' --check-cfg 'cfg(libc_deny_warnings)' --check-cfg 'cfg(linux_time_bits64)' --check-cfg 'cfg(musl_v1_2_3)' --check-cfg 'cfg(musl32_time64)' --check-cfg 'cfg(musl_redir_time64)' --check-cfg 'cfg(vxworks_lt_25_09)' --check-cfg 'cfg(libc_pauthtest)' --check-cfg 'cfg(target_os,values("switch","aix","ohos","hurd","rtems","visionos","nuttx","cygwin","qurt","qnx"))' --check-cfg 'cfg(target_env,values("illumos","wasi","aix","ohos","nto71_iosock"))' --check-cfg 'cfg(target_arch,values("loongarch64","mips32r6","mips64r6","csky"))'`643 Running `/build/source/target/release/build/num-traits-0381f4606dff5f8d/build-script-build`644 Running `rustc --crate-name proc_macro2 --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=0e32cf32e1c735d5 -C extra-filename=-82ae911c3ba39528 --out-dir /build/source/target/release/deps -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern unicode_ident=/build/source/target/release/deps/libunicode_ident-c74e3b88548992d2.rmeta --cap-lints allow --cfg wrap_proc_macro --cfg proc_macro_span_location --cfg proc_macro_span_file --check-cfg 'cfg(fuzzing)' --check-cfg 'cfg(no_is_available)' --check-cfg 'cfg(no_literal_byte_character)' --check-cfg 'cfg(no_literal_c_string)' --check-cfg 'cfg(no_source_text)' --check-cfg 'cfg(proc_macro_span)' --check-cfg 'cfg(proc_macro_span_file)' --check-cfg 'cfg(proc_macro_span_location)' --check-cfg 'cfg(procmacro2_backtrace)' --check-cfg 'cfg(procmacro2_build_probe)' --check-cfg 'cfg(procmacro2_nightly_testing)' --check-cfg 'cfg(procmacro2_semver_exempt)' --check-cfg 'cfg(randomize_layout)' --check-cfg 'cfg(span_locations)' --check-cfg 'cfg(super_unstable)' --check-cfg 'cfg(wrap_proc_macro)'`645 Running `/build/source/target/release/build/memoffset-39de7929a8b4be42/build-script-build`646 Running `/build/source/target/release/build/matrixmultiply-a28e0125945846e2/build-script-build`647 Running `/build/source/target/release/build/target-lexicon-1923f9b508cf29c4/build-script-build`648 Running `rustc --crate-name target_lexicon --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=unexpected_cfgs --check-cfg 'cfg(feature, values("rust_1_40", "cargo-clippy"))' -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arch_z80", "arch_zkasm", "default", "serde", "serde_support", "std"))' -C metadata=e86912aead1355de -C extra-filename=-08a28daeac073f90 --out-dir /build/source/target/release/deps -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow --cfg 'feature="rust_1_40"'`649 Running `rustc --crate-name memoffset --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "unstable_const", "unstable_offset_of"))' -C metadata=3f444290d0519a55 -C extra-filename=-0c893d786b000fba --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg tuple_ty --cfg allow_clippy --cfg maybe_uninit --cfg doctests --cfg raw_ref_macros --cfg stable_const --cfg stable_offset_of`650 Running `rustc --crate-name matrixmultiply --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="cgemm"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("avx512", "cgemm", "constconf", "default", "num_cpus", "once_cell", "std", "thread-tree", "threading"))' -C metadata=726dc4308008e1c6 -C extra-filename=-9358e6ac248b2823 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern rawpointer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librawpointer-321647f79fda5009.rmeta --cap-lints allow -Cforce-frame-pointers=yes --check-cfg 'cfg(has_avx512)'`651 Running `rustc --crate-name num_traits --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="i128"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "libm", "std"))' -C metadata=8642df2c435d26ca -C extra-filename=-0895278af2705c68 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg has_total_cmp --check-cfg 'cfg(has_total_cmp)'`652 Compiling pyo3-build-config v0.27.2653 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="resolve-config"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib", "resolve-config"))' -C metadata=57a4121ac5839ff4 -C extra-filename=-44dfe99628b902d6 --out-dir /build/source/target/release/build/pyo3-build-config-44dfe99628b902d6 -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern target_lexicon=/build/source/target/release/deps/libtarget_lexicon-08a28daeac073f90.rlib --cap-lints allow`654 Running `rustc --crate-name quote --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "proc-macro"))' -C metadata=d1f4e6caaa2f2e1f -C extra-filename=-130c0e8ce9dec1ff --out-dir /build/source/target/release/deps -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-82ae911c3ba39528.rmeta --cap-lints allow --check-cfg 'cfg(no_diagnostic_namespace)'`655 Compiling syn v2.0.119656 Running `rustc --crate-name syn --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/syn-2.0.119/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=7e78d6dbef47a99c -C extra-filename=-230d5172e6b75b2d --out-dir /build/source/target/release/deps -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-82ae911c3ba39528.rmeta --extern quote=/build/source/target/release/deps/libquote-130c0e8ce9dec1ff.rmeta --extern unicode_ident=/build/source/target/release/deps/libunicode_ident-c74e3b88548992d2.rmeta --cap-lints allow`657 Running `/build/source/target/release/build/pyo3-build-config-44dfe99628b902d6/build-script-build`658 Running `rustc --crate-name pyo3_build_config --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="resolve-config"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib", "resolve-config"))' -C metadata=79f8d6640738918c -C extra-filename=-1a86d8ca13f9c0d8 --out-dir /build/source/target/release/deps -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern target_lexicon=/build/source/target/release/deps/libtarget_lexicon-08a28daeac073f90.rmeta --cap-lints allow`659 Compiling num-integer v0.1.47660 Compiling num-complex v0.4.6661 Running `rustc --crate-name num_integer --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-integer-0.1.47/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "std"))' -C metadata=da78310955af83ff -C extra-filename=-90b28fa43245104a --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rmeta --cap-lints allow -Cforce-frame-pointers=yes`662 Running `rustc --crate-name num_complex --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-complex-0.4.6/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("bytecheck", "bytemuck", "default", "libm", "rand", "rkyv", "serde", "std"))' -C metadata=7d4e81b15547a676 -C extra-filename=-e503fc626abc55fb --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rmeta --cap-lints allow -Cforce-frame-pointers=yes`663 Compiling pyo3-ffi v0.27.2664 Compiling pyo3-macros-backend v0.27.2665 Compiling pyo3 v0.27.2666 Compiling numpy v0.27.1667 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib"))' -C metadata=2cd0b3d22255d624 -C extra-filename=-87f7579efddd4333 --out-dir /build/source/target/release/build/pyo3-ffi-87f7579efddd4333 -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rlib --cap-lints allow`668 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=b8b9079b505a116e -C extra-filename=-f6b6353518ce8715 --out-dir /build/source/target/release/build/pyo3-macros-backend-f6b6353518ce8715 -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rlib --cap-lints allow`669 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="indoc"' --cfg 'feature="macros"' --cfg 'feature="pyo3-macros"' --cfg 'feature="unindent"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "anyhow", "arc_lock", "auto-initialize", "bigdecimal", "bytes", "chrono", "chrono-local", "chrono-tz", "default", "either", "experimental-async", "experimental-inspect", "extension-module", "eyre", "full", "generate-import-lib", "hashbrown", "indexmap", "indoc", "inventory", "jiff-02", "lock_api", "macros", "multiple-pymethods", "nightly", "num-bigint", "num-complex", "num-rational", "ordered-float", "parking_lot", "py-clone", "pyo3-macros", "rust_decimal", "serde", "smallvec", "time", "unindent", "uuid"))' -C metadata=de1c401902eda1ee -C extra-filename=-c07062a7e27d8381 --out-dir /build/source/target/release/build/pyo3-c07062a7e27d8381 -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rlib --cap-lints allow`670 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no '--allow=clippy::needless-lifetimes' --deny=elided-lifetimes-in-paths -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("half", "nalgebra"))' -C metadata=f7f6da2f52f0dfbe -C extra-filename=-cc457513a32fffd2 --out-dir /build/source/target/release/build/numpy-cc457513a32fffd2 -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rlib --cap-lints allow`671 Compiling ndarray v0.17.2672 Running `rustc --crate-name ndarray --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/ndarray-0.17.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("approx", "blas", "default", "matrixmultiply-threading", "portable-atomic-critical-section", "rayon", "serde", "std"))' -C metadata=041257198ec0ca4e -C extra-filename=-717144b08148cdbf --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern matrixmultiply=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libmatrixmultiply-9358e6ac248b2823.rmeta --extern num_complex=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_complex-e503fc626abc55fb.rmeta --extern num_integer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_integer-90b28fa43245104a.rmeta --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rmeta --extern rawpointer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librawpointer-321647f79fda5009.rmeta --cap-lints allow -Cforce-frame-pointers=yes`673 Running `/build/source/target/release/build/pyo3-macros-backend-f6b6353518ce8715/build-script-build`674 Running `/build/source/target/release/build/numpy-cc457513a32fffd2/build-script-build`675 Running `/build/source/target/release/build/pyo3-ffi-87f7579efddd4333/build-script-build`676 Running `/build/source/target/release/build/pyo3-c07062a7e27d8381/build-script-build`677 Running `rustc --crate-name pyo3_ffi --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --cfg 'feature="default"' --cfg 'feature="extension-module"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib"))' -C metadata=17177a2cd744e4d3 -C extra-filename=-68c18b282249059b --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-e026cf6eaa02b327.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`678 Running `rustc --crate-name pyo3_macros_backend --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=3ea599f34ba539ac -C extra-filename=-685453fc0f80c0e6 --out-dir /build/source/target/release/deps -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern heck=/build/source/target/release/deps/libheck-5aefe23acf6837b5.rmeta --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-82ae911c3ba39528.rmeta --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-1a86d8ca13f9c0d8.rmeta --extern quote=/build/source/target/release/deps/libquote-130c0e8ce9dec1ff.rmeta --extern syn=/build/source/target/release/deps/libsyn-230d5172e6b75b2d.rmeta --cap-lints allow --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`679 Compiling pyo3-macros v0.27.2680 Running `rustc --crate-name pyo3_macros --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect", "multiple-pymethods"))' -C metadata=cd727d21317ff0a0 -C extra-filename=-cbf9c618afddff41 --out-dir /build/source/target/release/deps -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-82ae911c3ba39528.rlib --extern pyo3_macros_backend=/build/source/target/release/deps/libpyo3_macros_backend-685453fc0f80c0e6.rlib --extern quote=/build/source/target/release/deps/libquote-130c0e8ce9dec1ff.rlib --extern syn=/build/source/target/release/deps/libsyn-230d5172e6b75b2d.rlib --extern proc_macro --cap-lints allow`681 Running `rustc --crate-name pyo3 --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="indoc"' --cfg 'feature="macros"' --cfg 'feature="pyo3-macros"' --cfg 'feature="unindent"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "anyhow", "arc_lock", "auto-initialize", "bigdecimal", "bytes", "chrono", "chrono-local", "chrono-tz", "default", "either", "experimental-async", "experimental-inspect", "extension-module", "eyre", "full", "generate-import-lib", "hashbrown", "indexmap", "indoc", "inventory", "jiff-02", "lock_api", "macros", "multiple-pymethods", "nightly", "num-bigint", "num-complex", "num-rational", "ordered-float", "parking_lot", "py-clone", "pyo3-macros", "rust_decimal", "serde", "smallvec", "time", "unindent", "uuid"))' -C metadata=e64e2168bef78639 -C extra-filename=-f1e67b5b7d0f7a1e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern indoc=/build/source/target/release/deps/libindoc-2619e51e066ea75a.so --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-e026cf6eaa02b327.rmeta --extern memoffset=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libmemoffset-0c893d786b000fba.rmeta --extern once_cell=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libonce_cell-d2de14c4caf3215f.rmeta --extern pyo3_ffi=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3_ffi-68c18b282249059b.rmeta --extern pyo3_macros=/build/source/target/release/deps/libpyo3_macros-cbf9c618afddff41.so --extern unindent=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libunindent-bb0db7ca4bb55f80.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`682 Running `rustc --crate-name numpy --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no '--allow=clippy::needless-lifetimes' --deny=elided-lifetimes-in-paths --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("half", "nalgebra"))' -C metadata=57029cbd47983815 -C extra-filename=-1b93626e33777ba9 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-e026cf6eaa02b327.rmeta --extern ndarray=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libndarray-717144b08148cdbf.rmeta --extern num_complex=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_complex-e503fc626abc55fb.rmeta --extern num_integer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_integer-90b28fa43245104a.rmeta --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rmeta --extern pyo3=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3-f1e67b5b7d0f7a1e.rmeta --extern rustc_hash=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librustc_hash-8009794313d47b81.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)'`683 Compiling biotite_rust v0.0.0 (/build/source)684 Running `rustc --crate-name rust --edition=2018 src/rust/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type cdylib --emit=dep-info,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=f966fc46dedf2311 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern itertools=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libitertools-42433dbef26eed58.rlib --extern ndarray=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libndarray-717144b08148cdbf.rlib --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-0895278af2705c68.rlib --extern numpy=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnumpy-1b93626e33777ba9.rlib --extern pyo3=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3-f1e67b5b7d0f7a1e.rlib --extern smallvec=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libsmallvec-ae0eb1e0faa58575.rlib -Cforce-frame-pointers=yes`685 Finished `release` profile [optimized] target(s) in 14.77s686Copying rust artifact from target/x86_64-unknown-linux-gnu/release/librust.so to build/lib.linux-x86_64-cpython-314/biotite/rust.cpython-314-x86_64-linux-gnu.so687installing to build/bdist.linux-x86_64/wheel688running install689running install_lib690creating build/bdist.linux-x86_64/wheel691creating build/bdist.linux-x86_64/wheel/biotite692copying build/lib.linux-x86_64-cpython-314/biotite/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite693copying build/lib.linux-x86_64-cpython-314/biotite/copyable.py -> build/bdist.linux-x86_64/wheel/./biotite694copying build/lib.linux-x86_64-cpython-314/biotite/file.py -> build/bdist.linux-x86_64/wheel/./biotite695copying build/lib.linux-x86_64-cpython-314/biotite/setup_ccd.py -> build/bdist.linux-x86_64/wheel/./biotite696copying build/lib.linux-x86_64-cpython-314/biotite/typing.py -> build/bdist.linux-x86_64/wheel/./biotite697copying build/lib.linux-x86_64-cpython-314/biotite/visualize.py -> build/bdist.linux-x86_64/wheel/./biotite698copying build/lib.linux-x86_64-cpython-314/biotite/version.py -> build/bdist.linux-x86_64/wheel/./biotite699creating build/bdist.linux-x86_64/wheel/biotite/interface700copying build/lib.linux-x86_64-cpython-314/biotite/interface/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface701copying build/lib.linux-x86_64-cpython-314/biotite/interface/version.py -> build/bdist.linux-x86_64/wheel/./biotite/interface702copying build/lib.linux-x86_64-cpython-314/biotite/interface/warning.py -> build/bdist.linux-x86_64/wheel/./biotite/interface703creating build/bdist.linux-x86_64/wheel/biotite/interface/openmm704copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm705copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/state.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm706copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/system.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm707creating build/bdist.linux-x86_64/wheel/biotite/interface/pymol708copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol709copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/cgo.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol710copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol711copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/display.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol712copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/object.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol713copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/shapes.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol714copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/startup.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol715creating build/bdist.linux-x86_64/wheel/biotite/interface/rdkit716copying build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/rdkit717copying build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit/mol.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/rdkit718creating build/bdist.linux-x86_64/wheel/biotite/sequence719copying build/lib.linux-x86_64-cpython-314/biotite/sequence/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence720copying build/lib.linux-x86_64-cpython-314/biotite/sequence/alphabet.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence721copying build/lib.linux-x86_64-cpython-314/biotite/sequence/annotation.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence722copying build/lib.linux-x86_64-cpython-314/biotite/sequence/codon.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence723copying build/lib.linux-x86_64-cpython-314/biotite/sequence/profile.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence724copying build/lib.linux-x86_64-cpython-314/biotite/sequence/search.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence725copying build/lib.linux-x86_64-cpython-314/biotite/sequence/seqtypes.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence726copying build/lib.linux-x86_64-cpython-314/biotite/sequence/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence727creating build/bdist.linux-x86_64/wheel/biotite/sequence/align728copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align729copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align730copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/buckets.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align731copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/cigar.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align732copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align733copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/statistics.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align734copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align735copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align736copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align737copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align738copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align739copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align740copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align741copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align742copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align743copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpp -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align744copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align745copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align746copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align747copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align748copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align749copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align750copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align751copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align752copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align753copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align754copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align755copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align756copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align757copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align758copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align759copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align760copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align761copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/primes.txt -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align762copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align763copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align764copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align765copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align766copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.pxd -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align767copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align768creating build/bdist.linux-x86_64/wheel/biotite/sequence/align/matrix_data769copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/3Di.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data770copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data771copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data772copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data773copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data774copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data775copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data776copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data777copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data778copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data779copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data780copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data781copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data782copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data783copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data784copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data785copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data786copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data787copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data788copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data789copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data790copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data791copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data792copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data793copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data794copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data795copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data796copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data797copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data798copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data799copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/GONNET.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data800copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data801copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/MATCH.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data802copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/NUC.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data803copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM10.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data804copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM100.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data805copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM110.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data806copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM120.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data807copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM130.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data808copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM140.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data809copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM150.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data810copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM160.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data811copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM170.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data812copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM180.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data813copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM190.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data814copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM20.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data815copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM200.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data816copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM210.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data817copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM220.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data818copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM230.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data819copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM240.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data820copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM250.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data821copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM260.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data822copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM270.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data823copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM280.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data824copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM290.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data825copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM30.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data826copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM300.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data827copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM310.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data828copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM320.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data829copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM330.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data830copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM340.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data831copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM350.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data832copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM360.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data833copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM370.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data834copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM380.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data835copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM390.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data836copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM40.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data837copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM400.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data838copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM410.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data839copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM420.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data840copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM430.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data841copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM440.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data842copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM450.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data843copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM460.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data844copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM470.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data845copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM480.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data846copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM490.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data847copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM50.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data848copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM500.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data849copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM60.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data850copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM70.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data851copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM80.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data852copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM90.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data853copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PB.license -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data854copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PB.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data855copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data856copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data857copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data858copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data859copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data860copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data861copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align862copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align863copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align864copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align865copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align866copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align867copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align868copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align869copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align870copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align871copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align872creating build/bdist.linux-x86_64/wheel/biotite/sequence/graphics873copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics874copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics875copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/colorschemes.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics876copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/dendrogram.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics877copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/features.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics878copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/logo.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics879copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/plasmid.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics880creating build/bdist.linux-x86_64/wheel/biotite/sequence/graphics/color_schemes881copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/3di_flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes882copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/autumn.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes883copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/blossom.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes884copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes885copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes886copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes887copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes888copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes889copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes890copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes891copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes892copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes893copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes894copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/ocean.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes895copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes896copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes897copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes898copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/spring.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes899copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/sunset.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes900copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/wither.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes901creating build/bdist.linux-x86_64/wheel/biotite/sequence/io902copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/general.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io903copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io904creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/clustal905copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal906copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal907copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal908creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/fasta909copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta910copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta911copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta912creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/fastq913copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq914copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq915copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq916creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/genbank917copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank918copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/annotation.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank919copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank920copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/metadata.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank921copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank922creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/gff923copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff924copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff925copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff926creating build/bdist.linux-x86_64/wheel/biotite/sequence/phylo927copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo928copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo929copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo930copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo931copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo932copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo933copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo934copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo935copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo936copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo937copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo938copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo939copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo940copying build/lib.linux-x86_64-cpython-314/biotite/sequence/codon_tables.txt -> build/bdist.linux-x86_64/wheel/./biotite/sequence941creating build/bdist.linux-x86_64/wheel/biotite/structure942copying build/lib.linux-x86_64-cpython-314/biotite/structure/superimpose.py -> build/bdist.linux-x86_64/wheel/./biotite/structure943copying build/lib.linux-x86_64-cpython-314/biotite/structure/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure944copying build/lib.linux-x86_64-cpython-314/biotite/structure/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure945copying build/lib.linux-x86_64-cpython-314/biotite/structure/basepairs.py -> build/bdist.linux-x86_64/wheel/./biotite/structure946copying build/lib.linux-x86_64-cpython-314/biotite/structure/bonds.py -> build/bdist.linux-x86_64/wheel/./biotite/structure947copying build/lib.linux-x86_64-cpython-314/biotite/structure/box.py -> build/bdist.linux-x86_64/wheel/./biotite/structure948copying build/lib.linux-x86_64-cpython-314/biotite/structure/celllist.py -> build/bdist.linux-x86_64/wheel/./biotite/structure949copying build/lib.linux-x86_64-cpython-314/biotite/structure/chains.py -> build/bdist.linux-x86_64/wheel/./biotite/structure950copying build/lib.linux-x86_64-cpython-314/biotite/structure/charges.py -> build/bdist.linux-x86_64/wheel/./biotite/structure951copying build/lib.linux-x86_64-cpython-314/biotite/structure/compare.py -> build/bdist.linux-x86_64/wheel/./biotite/structure952copying build/lib.linux-x86_64-cpython-314/biotite/structure/connect.py -> build/bdist.linux-x86_64/wheel/./biotite/structure953copying build/lib.linux-x86_64-cpython-314/biotite/structure/density.py -> build/bdist.linux-x86_64/wheel/./biotite/structure954copying build/lib.linux-x86_64-cpython-314/biotite/structure/dotbracket.py -> build/bdist.linux-x86_64/wheel/./biotite/structure955copying build/lib.linux-x86_64-cpython-314/biotite/structure/error.py -> build/bdist.linux-x86_64/wheel/./biotite/structure956copying build/lib.linux-x86_64-cpython-314/biotite/structure/filter.py -> build/bdist.linux-x86_64/wheel/./biotite/structure957copying build/lib.linux-x86_64-cpython-314/biotite/structure/geometry.py -> build/bdist.linux-x86_64/wheel/./biotite/structure958copying build/lib.linux-x86_64-cpython-314/biotite/structure/hbond.py -> build/bdist.linux-x86_64/wheel/./biotite/structure959copying build/lib.linux-x86_64-cpython-314/biotite/structure/integrity.py -> build/bdist.linux-x86_64/wheel/./biotite/structure960copying build/lib.linux-x86_64-cpython-314/biotite/structure/mechanics.py -> build/bdist.linux-x86_64/wheel/./biotite/structure961copying build/lib.linux-x86_64-cpython-314/biotite/structure/molecules.py -> build/bdist.linux-x86_64/wheel/./biotite/structure962copying build/lib.linux-x86_64-cpython-314/biotite/structure/pseudoknots.py -> build/bdist.linux-x86_64/wheel/./biotite/structure963copying build/lib.linux-x86_64-cpython-314/biotite/structure/rdf.py -> build/bdist.linux-x86_64/wheel/./biotite/structure964copying build/lib.linux-x86_64-cpython-314/biotite/structure/repair.py -> build/bdist.linux-x86_64/wheel/./biotite/structure965copying build/lib.linux-x86_64-cpython-314/biotite/structure/residues.py -> build/bdist.linux-x86_64/wheel/./biotite/structure966copying build/lib.linux-x86_64-cpython-314/biotite/structure/rings.py -> build/bdist.linux-x86_64/wheel/./biotite/structure967copying build/lib.linux-x86_64-cpython-314/biotite/structure/sasa.py -> build/bdist.linux-x86_64/wheel/./biotite/structure968copying build/lib.linux-x86_64-cpython-314/biotite/structure/segments.py -> build/bdist.linux-x86_64/wheel/./biotite/structure969copying build/lib.linux-x86_64-cpython-314/biotite/structure/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/structure970copying build/lib.linux-x86_64-cpython-314/biotite/structure/sse.py -> build/bdist.linux-x86_64/wheel/./biotite/structure971copying build/lib.linux-x86_64-cpython-314/biotite/structure/tm.py -> build/bdist.linux-x86_64/wheel/./biotite/structure972copying build/lib.linux-x86_64-cpython-314/biotite/structure/transform.py -> build/bdist.linux-x86_64/wheel/./biotite/structure973copying build/lib.linux-x86_64-cpython-314/biotite/structure/util.py -> build/bdist.linux-x86_64/wheel/./biotite/structure974creating build/bdist.linux-x86_64/wheel/biotite/structure/alphabet975copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet976copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/encoder.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet977copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/i3d.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet978copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/layers.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet979copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/pb.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet980copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/unkerasify.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet981copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/encoder_weights_3di.kerasify -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet982copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/pb.license -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet983creating build/bdist.linux-x86_64/wheel/biotite/structure/graphics984copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics985copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/rna.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics986copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics987creating build/bdist.linux-x86_64/wheel/biotite/structure/info988copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info989copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info990copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/bonds.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info991copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/ccd.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info992copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/groups.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info993copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/masses.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info994copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/misc.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info995copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/radii.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info996copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/standardize.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info997copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/atom_masses.json -> build/bdist.linux-x86_64/wheel/./biotite/structure/info998creating build/bdist.linux-x86_64/wheel/biotite/structure/io999copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io1000copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/general.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io1001copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trajfile.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io1002copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/util.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io1003creating build/bdist.linux-x86_64/wheel/biotite/structure/io/dcd1004copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/dcd1005copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/dcd1006creating build/bdist.linux-x86_64/wheel/biotite/structure/io/gro1007copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/gro1008copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/gro1009creating build/bdist.linux-x86_64/wheel/biotite/structure/io/mol1010copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1011copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1012copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/ctab.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1013copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/header.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1014copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/mol.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1015copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/sdf.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1016creating build/bdist.linux-x86_64/wheel/biotite/structure/io/netcdf1017copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/netcdf1018copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/netcdf1019creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdb1020copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb1021copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb1022copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb1023creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdbqt1024copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt1025copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt1026copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt1027creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdbx1028copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1029copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/bcif.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1030copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/cif.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1031copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/component.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1032copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/compress.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1033copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1034copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/encoding.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1035creating build/bdist.linux-x86_64/wheel/biotite/structure/io/trr1036copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/trr1037copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/trr1038creating build/bdist.linux-x86_64/wheel/biotite/structure/io/xtc1039copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/xtc1040copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/xtc1041copying build/lib.linux-x86_64-cpython-314/biotite/structure/atoms.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure1042copying build/lib.linux-x86_64-cpython-314/biotite/structure/bonds.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure1043copying build/lib.linux-x86_64-cpython-314/biotite/structure/celllist.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure1044copying build/lib.linux-x86_64-cpython-314/biotite/structure/spacegroups.json -> build/bdist.linux-x86_64/wheel/./biotite/structure1045copying build/lib.linux-x86_64-cpython-314/biotite/structure/spacegroups.license -> build/bdist.linux-x86_64/wheel/./biotite/structure1046creating build/bdist.linux-x86_64/wheel/biotite/application1047copying build/lib.linux-x86_64-cpython-314/biotite/application/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application1048copying build/lib.linux-x86_64-cpython-314/biotite/application/application.py -> build/bdist.linux-x86_64/wheel/./biotite/application1049copying build/lib.linux-x86_64-cpython-314/biotite/application/localapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application1050copying build/lib.linux-x86_64-cpython-314/biotite/application/msaapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application1051copying build/lib.linux-x86_64-cpython-314/biotite/application/util.py -> build/bdist.linux-x86_64/wheel/./biotite/application1052copying build/lib.linux-x86_64-cpython-314/biotite/application/webapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application1053creating build/bdist.linux-x86_64/wheel/biotite/application/autodock1054copying build/lib.linux-x86_64-cpython-314/biotite/application/autodock/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/autodock1055copying build/lib.linux-x86_64-cpython-314/biotite/application/autodock/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/autodock1056creating build/bdist.linux-x86_64/wheel/biotite/application/blast1057copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast1058copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast1059copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/webapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast1060creating build/bdist.linux-x86_64/wheel/biotite/application/clustalo1061copying build/lib.linux-x86_64-cpython-314/biotite/application/clustalo/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/clustalo1062copying build/lib.linux-x86_64-cpython-314/biotite/application/clustalo/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/clustalo1063creating build/bdist.linux-x86_64/wheel/biotite/application/dssp1064copying build/lib.linux-x86_64-cpython-314/biotite/application/dssp/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/dssp1065copying build/lib.linux-x86_64-cpython-314/biotite/application/dssp/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/dssp1066creating build/bdist.linux-x86_64/wheel/biotite/application/mafft1067copying build/lib.linux-x86_64-cpython-314/biotite/application/mafft/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/mafft1068copying build/lib.linux-x86_64-cpython-314/biotite/application/mafft/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/mafft1069creating build/bdist.linux-x86_64/wheel/biotite/application/muscle1070copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle1071copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/app3.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle1072copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/app5.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle1073creating build/bdist.linux-x86_64/wheel/biotite/application/sra1074copying build/lib.linux-x86_64-cpython-314/biotite/application/sra/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/sra1075copying build/lib.linux-x86_64-cpython-314/biotite/application/sra/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/sra1076creating build/bdist.linux-x86_64/wheel/biotite/application/tantan1077copying build/lib.linux-x86_64-cpython-314/biotite/application/tantan/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/tantan1078copying build/lib.linux-x86_64-cpython-314/biotite/application/tantan/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/tantan1079creating build/bdist.linux-x86_64/wheel/biotite/application/viennarna1080copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnaalifold.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna1081copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnafold.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna1082copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnaplot.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna1083copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/util.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna1084copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna1085creating build/bdist.linux-x86_64/wheel/biotite/database1086copying build/lib.linux-x86_64-cpython-314/biotite/database/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database1087copying build/lib.linux-x86_64-cpython-314/biotite/database/error.py -> build/bdist.linux-x86_64/wheel/./biotite/database1088creating build/bdist.linux-x86_64/wheel/biotite/database/uniprot1089copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/check.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot1090copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot1091copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot1092copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot1093creating build/bdist.linux-x86_64/wheel/biotite/database/afdb1094copying build/lib.linux-x86_64-cpython-314/biotite/database/afdb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/afdb1095copying build/lib.linux-x86_64-cpython-314/biotite/database/afdb/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/afdb1096creating build/bdist.linux-x86_64/wheel/biotite/database/entrez1097copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez1098copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/check.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez1099copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/dbnames.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez1100copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez1101copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/key.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez1102copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez1103creating build/bdist.linux-x86_64/wheel/biotite/database/pubchem1104copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem1105copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem1106copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/error.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem1107copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem1108copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/throttle.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem1109creating build/bdist.linux-x86_64/wheel/biotite/database/rcsb1110copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb1111copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb1112copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb1113copying build/lib.linux-x86_64-cpython-314/biotite/py.typed -> build/bdist.linux-x86_64/wheel/./biotite1114copying build/lib.linux-x86_64-cpython-314/biotite/rust.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite1115creating build/bdist.linux-x86_64/wheel/rust1116copying build/lib.linux-x86_64-cpython-314/rust/lib.rs -> build/bdist.linux-x86_64/wheel/./rust1117copying build/lib.linux-x86_64-cpython-314/rust/util.rs -> build/bdist.linux-x86_64/wheel/./rust1118creating build/bdist.linux-x86_64/wheel/rust/sequence1119copying build/lib.linux-x86_64-cpython-314/rust/sequence/codec.rs -> build/bdist.linux-x86_64/wheel/./rust/sequence1120copying build/lib.linux-x86_64-cpython-314/rust/sequence/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/sequence1121creating build/bdist.linux-x86_64/wheel/rust/structure1122copying build/lib.linux-x86_64-cpython-314/rust/structure/bonds.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1123copying build/lib.linux-x86_64-cpython-314/rust/structure/celllist.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1124copying build/lib.linux-x86_64-cpython-314/rust/structure/charges.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1125copying build/lib.linux-x86_64-cpython-314/rust/structure/connect.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1126copying build/lib.linux-x86_64-cpython-314/rust/structure/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1127copying build/lib.linux-x86_64-cpython-314/rust/structure/sasa.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1128copying build/lib.linux-x86_64-cpython-314/rust/structure/util.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1129creating build/bdist.linux-x86_64/wheel/rust/structure/io1130copying build/lib.linux-x86_64-cpython-314/rust/structure/io/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io1131creating build/bdist.linux-x86_64/wheel/rust/structure/io/pdb1132copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/file.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb1133copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/hybrid36.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb1134copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb1135creating build/bdist.linux-x86_64/wheel/rust/structure/io/pdbx1136copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx/encoding.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdbx1137copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdbx1138running install_egg_info1139Copying src/biotite.egg-info to build/bdist.linux-x86_64/wheel/./biotite-1.7.1-py3.14.egg-info1140running install_scripts1141creating build/bdist.linux-x86_64/wheel/biotite-1.7.1.dist-info/WHEEL1142creating '/build/source/dist/.tmp-sqdh3our/biotite-1.7.1-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it1143adding 'biotite/__init__.py'1144adding 'biotite/copyable.py'1145adding 'biotite/file.py'1146adding 'biotite/py.typed'1147adding 'biotite/rust.cpython-314-x86_64-linux-gnu.so'1148adding 'biotite/setup_ccd.py'1149adding 'biotite/typing.py'1150adding 'biotite/version.py'1151adding 'biotite/visualize.py'1152adding 'biotite/application/__init__.py'1153adding 'biotite/application/application.py'1154adding 'biotite/application/localapp.py'1155adding 'biotite/application/msaapp.py'1156adding 'biotite/application/util.py'1157adding 'biotite/application/webapp.py'1158adding 'biotite/application/autodock/__init__.py'1159adding 'biotite/application/autodock/app.py'1160adding 'biotite/application/blast/__init__.py'1161adding 'biotite/application/blast/alignment.py'1162adding 'biotite/application/blast/webapp.py'1163adding 'biotite/application/clustalo/__init__.py'1164adding 'biotite/application/clustalo/app.py'1165adding 'biotite/application/dssp/__init__.py'1166adding 'biotite/application/dssp/app.py'1167adding 'biotite/application/mafft/__init__.py'1168adding 'biotite/application/mafft/app.py'1169adding 'biotite/application/muscle/__init__.py'1170adding 'biotite/application/muscle/app3.py'1171adding 'biotite/application/muscle/app5.py'1172adding 'biotite/application/sra/__init__.py'1173adding 'biotite/application/sra/app.py'1174adding 'biotite/application/tantan/__init__.py'1175adding 'biotite/application/tantan/app.py'1176adding 'biotite/application/viennarna/__init__.py'1177adding 'biotite/application/viennarna/rnaalifold.py'1178adding 'biotite/application/viennarna/rnafold.py'1179adding 'biotite/application/viennarna/rnaplot.py'1180adding 'biotite/application/viennarna/util.py'1181adding 'biotite/database/__init__.py'1182adding 'biotite/database/error.py'1183adding 'biotite/database/afdb/__init__.py'1184adding 'biotite/database/afdb/download.py'1185adding 'biotite/database/entrez/__init__.py'1186adding 'biotite/database/entrez/check.py'1187adding 'biotite/database/entrez/dbnames.py'1188adding 'biotite/database/entrez/download.py'1189adding 'biotite/database/entrez/key.py'1190adding 'biotite/database/entrez/query.py'1191adding 'biotite/database/pubchem/__init__.py'1192adding 'biotite/database/pubchem/download.py'1193adding 'biotite/database/pubchem/error.py'1194adding 'biotite/database/pubchem/query.py'1195adding 'biotite/database/pubchem/throttle.py'1196adding 'biotite/database/rcsb/__init__.py'1197adding 'biotite/database/rcsb/download.py'1198adding 'biotite/database/rcsb/query.py'1199adding 'biotite/database/uniprot/__init__.py'1200adding 'biotite/database/uniprot/check.py'1201adding 'biotite/database/uniprot/download.py'1202adding 'biotite/database/uniprot/query.py'1203adding 'biotite/interface/__init__.py'1204adding 'biotite/interface/version.py'1205adding 'biotite/interface/warning.py'1206adding 'biotite/interface/openmm/__init__.py'1207adding 'biotite/interface/openmm/state.py'1208adding 'biotite/interface/openmm/system.py'1209adding 'biotite/interface/pymol/__init__.py'1210adding 'biotite/interface/pymol/cgo.py'1211adding 'biotite/interface/pymol/convert.py'1212adding 'biotite/interface/pymol/display.py'1213adding 'biotite/interface/pymol/object.py'1214adding 'biotite/interface/pymol/shapes.py'1215adding 'biotite/interface/pymol/startup.py'1216adding 'biotite/interface/rdkit/__init__.py'1217adding 'biotite/interface/rdkit/mol.py'1218adding 'biotite/sequence/__init__.py'1219adding 'biotite/sequence/alphabet.py'1220adding 'biotite/sequence/annotation.py'1221adding 'biotite/sequence/codon.py'1222adding 'biotite/sequence/codon_tables.txt'1223adding 'biotite/sequence/profile.py'1224adding 'biotite/sequence/search.py'1225adding 'biotite/sequence/seqtypes.py'1226adding 'biotite/sequence/sequence.py'1227adding 'biotite/sequence/align/__init__.py'1228adding 'biotite/sequence/align/alignment.py'1229adding 'biotite/sequence/align/banded.c'1230adding 'biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so'1231adding 'biotite/sequence/align/banded.pyi'1232adding 'biotite/sequence/align/banded.pyx'1233adding 'biotite/sequence/align/buckets.py'1234adding 'biotite/sequence/align/cigar.py'1235adding 'biotite/sequence/align/kmeralphabet.c'1236adding 'biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so'1237adding 'biotite/sequence/align/kmeralphabet.pyi'1238adding 'biotite/sequence/align/kmeralphabet.pyx'1239adding 'biotite/sequence/align/kmersimilarity.c'1240adding 'biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so'1241adding 'biotite/sequence/align/kmersimilarity.pyi'1242adding 'biotite/sequence/align/kmersimilarity.pyx'1243adding 'biotite/sequence/align/kmertable.cpp'1244adding 'biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so'1245adding 'biotite/sequence/align/kmertable.pyi'1246adding 'biotite/sequence/align/kmertable.pyx'1247adding 'biotite/sequence/align/localgapped.c'1248adding 'biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so'1249adding 'biotite/sequence/align/localgapped.pyi'1250adding 'biotite/sequence/align/localgapped.pyx'1251adding 'biotite/sequence/align/localungapped.c'1252adding 'biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so'1253adding 'biotite/sequence/align/localungapped.pyi'1254adding 'biotite/sequence/align/localungapped.pyx'1255adding 'biotite/sequence/align/matrix.py'1256adding 'biotite/sequence/align/multiple.c'1257adding 'biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so'1258adding 'biotite/sequence/align/multiple.pyi'1259adding 'biotite/sequence/align/multiple.pyx'1260adding 'biotite/sequence/align/pairwise.c'1261adding 'biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so'1262adding 'biotite/sequence/align/pairwise.pyi'1263adding 'biotite/sequence/align/pairwise.pyx'1264adding 'biotite/sequence/align/permutation.c'1265adding 'biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so'1266adding 'biotite/sequence/align/permutation.pyi'1267adding 'biotite/sequence/align/permutation.pyx'1268adding 'biotite/sequence/align/primes.txt'1269adding 'biotite/sequence/align/selector.c'1270adding 'biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so'1271adding 'biotite/sequence/align/selector.pyi'1272adding 'biotite/sequence/align/selector.pyx'1273adding 'biotite/sequence/align/statistics.py'1274adding 'biotite/sequence/align/tracetable.c'1275adding 'biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so'1276adding 'biotite/sequence/align/tracetable.pxd'1277adding 'biotite/sequence/align/tracetable.pyx'1278adding 'biotite/sequence/align/matrix_data/3Di.mat'1279adding 'biotite/sequence/align/matrix_data/BLOSUM100.mat'1280adding 'biotite/sequence/align/matrix_data/BLOSUM30.mat'1281adding 'biotite/sequence/align/matrix_data/BLOSUM35.mat'1282adding 'biotite/sequence/align/matrix_data/BLOSUM40.mat'1283adding 'biotite/sequence/align/matrix_data/BLOSUM45.mat'1284adding 'biotite/sequence/align/matrix_data/BLOSUM50.mat'1285adding 'biotite/sequence/align/matrix_data/BLOSUM50_13p.mat'1286adding 'biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat'1287adding 'biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat'1288adding 'biotite/sequence/align/matrix_data/BLOSUM55.mat'1289adding 'biotite/sequence/align/matrix_data/BLOSUM60.mat'1290adding 'biotite/sequence/align/matrix_data/BLOSUM62.mat'1291adding 'biotite/sequence/align/matrix_data/BLOSUM62_13p.mat'1292adding 'biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat'1293adding 'biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat'1294adding 'biotite/sequence/align/matrix_data/BLOSUM65.mat'1295adding 'biotite/sequence/align/matrix_data/BLOSUM70.mat'1296adding 'biotite/sequence/align/matrix_data/BLOSUM75.mat'1297adding 'biotite/sequence/align/matrix_data/BLOSUM80.mat'1298adding 'biotite/sequence/align/matrix_data/BLOSUM85.mat'1299adding 'biotite/sequence/align/matrix_data/BLOSUM90.mat'1300adding 'biotite/sequence/align/matrix_data/BLOSUMN.mat'1301adding 'biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat'1302adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat'1303adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat'1304adding 'biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat'1305adding 'biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat'1306adding 'biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat'1307adding 'biotite/sequence/align/matrix_data/DAYHOFF.mat'1308adding 'biotite/sequence/align/matrix_data/GONNET.mat'1309adding 'biotite/sequence/align/matrix_data/IDENTITY.mat'1310adding 'biotite/sequence/align/matrix_data/MATCH.mat'1311adding 'biotite/sequence/align/matrix_data/NUC.mat'1312adding 'biotite/sequence/align/matrix_data/PAM10.mat'1313adding 'biotite/sequence/align/matrix_data/PAM100.mat'1314adding 'biotite/sequence/align/matrix_data/PAM110.mat'1315adding 'biotite/sequence/align/matrix_data/PAM120.mat'1316adding 'biotite/sequence/align/matrix_data/PAM130.mat'1317adding 'biotite/sequence/align/matrix_data/PAM140.mat'1318adding 'biotite/sequence/align/matrix_data/PAM150.mat'1319adding 'biotite/sequence/align/matrix_data/PAM160.mat'1320adding 'biotite/sequence/align/matrix_data/PAM170.mat'1321adding 'biotite/sequence/align/matrix_data/PAM180.mat'1322adding 'biotite/sequence/align/matrix_data/PAM190.mat'1323adding 'biotite/sequence/align/matrix_data/PAM20.mat'1324adding 'biotite/sequence/align/matrix_data/PAM200.mat'1325adding 'biotite/sequence/align/matrix_data/PAM210.mat'1326adding 'biotite/sequence/align/matrix_data/PAM220.mat'1327adding 'biotite/sequence/align/matrix_data/PAM230.mat'1328adding 'biotite/sequence/align/matrix_data/PAM240.mat'1329adding 'biotite/sequence/align/matrix_data/PAM250.mat'1330adding 'biotite/sequence/align/matrix_data/PAM260.mat'1331adding 'biotite/sequence/align/matrix_data/PAM270.mat'1332adding 'biotite/sequence/align/matrix_data/PAM280.mat'1333adding 'biotite/sequence/align/matrix_data/PAM290.mat'1334adding 'biotite/sequence/align/matrix_data/PAM30.mat'1335adding 'biotite/sequence/align/matrix_data/PAM300.mat'1336adding 'biotite/sequence/align/matrix_data/PAM310.mat'1337adding 'biotite/sequence/align/matrix_data/PAM320.mat'1338adding 'biotite/sequence/align/matrix_data/PAM330.mat'1339adding 'biotite/sequence/align/matrix_data/PAM340.mat'1340adding 'biotite/sequence/align/matrix_data/PAM350.mat'1341adding 'biotite/sequence/align/matrix_data/PAM360.mat'1342adding 'biotite/sequence/align/matrix_data/PAM370.mat'1343adding 'biotite/sequence/align/matrix_data/PAM380.mat'1344adding 'biotite/sequence/align/matrix_data/PAM390.mat'1345adding 'biotite/sequence/align/matrix_data/PAM40.mat'1346adding 'biotite/sequence/align/matrix_data/PAM400.mat'1347adding 'biotite/sequence/align/matrix_data/PAM410.mat'1348adding 'biotite/sequence/align/matrix_data/PAM420.mat'1349adding 'biotite/sequence/align/matrix_data/PAM430.mat'1350adding 'biotite/sequence/align/matrix_data/PAM440.mat'1351adding 'biotite/sequence/align/matrix_data/PAM450.mat'1352adding 'biotite/sequence/align/matrix_data/PAM460.mat'1353adding 'biotite/sequence/align/matrix_data/PAM470.mat'1354adding 'biotite/sequence/align/matrix_data/PAM480.mat'1355adding 'biotite/sequence/align/matrix_data/PAM490.mat'1356adding 'biotite/sequence/align/matrix_data/PAM50.mat'1357adding 'biotite/sequence/align/matrix_data/PAM500.mat'1358adding 'biotite/sequence/align/matrix_data/PAM60.mat'1359adding 'biotite/sequence/align/matrix_data/PAM70.mat'1360adding 'biotite/sequence/align/matrix_data/PAM80.mat'1361adding 'biotite/sequence/align/matrix_data/PAM90.mat'1362adding 'biotite/sequence/align/matrix_data/PB.license'1363adding 'biotite/sequence/align/matrix_data/PB.mat'1364adding 'biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat'1365adding 'biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat'1366adding 'biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat'1367adding 'biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat'1368adding 'biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat'1369adding 'biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat'1370adding 'biotite/sequence/graphics/__init__.py'1371adding 'biotite/sequence/graphics/alignment.py'1372adding 'biotite/sequence/graphics/colorschemes.py'1373adding 'biotite/sequence/graphics/dendrogram.py'1374adding 'biotite/sequence/graphics/features.py'1375adding 'biotite/sequence/graphics/logo.py'1376adding 'biotite/sequence/graphics/plasmid.py'1377adding 'biotite/sequence/graphics/color_schemes/3di_flower.json'1378adding 'biotite/sequence/graphics/color_schemes/autumn.json'1379adding 'biotite/sequence/graphics/color_schemes/blossom.json'1380adding 'biotite/sequence/graphics/color_schemes/clustalx_dna.json'1381adding 'biotite/sequence/graphics/color_schemes/clustalx_protein.json'1382adding 'biotite/sequence/graphics/color_schemes/flower.json'1383adding 'biotite/sequence/graphics/color_schemes/jalview_buried.json'1384adding 'biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json'1385adding 'biotite/sequence/graphics/color_schemes/jalview_prop_helix.json'1386adding 'biotite/sequence/graphics/color_schemes/jalview_prop_strand.json'1387adding 'biotite/sequence/graphics/color_schemes/jalview_prop_turn.json'1388adding 'biotite/sequence/graphics/color_schemes/jalview_taylor.json'1389adding 'biotite/sequence/graphics/color_schemes/jalview_zappo.json'1390adding 'biotite/sequence/graphics/color_schemes/ocean.json'1391adding 'biotite/sequence/graphics/color_schemes/pb_flower.json'1392adding 'biotite/sequence/graphics/color_schemes/rainbow_dna.json'1393adding 'biotite/sequence/graphics/color_schemes/rainbow_protein.json'1394adding 'biotite/sequence/graphics/color_schemes/spring.json'1395adding 'biotite/sequence/graphics/color_schemes/sunset.json'1396adding 'biotite/sequence/graphics/color_schemes/wither.json'1397adding 'biotite/sequence/io/__init__.py'1398adding 'biotite/sequence/io/general.py'1399adding 'biotite/sequence/io/clustal/__init__.py'1400adding 'biotite/sequence/io/clustal/convert.py'1401adding 'biotite/sequence/io/clustal/file.py'1402adding 'biotite/sequence/io/fasta/__init__.py'1403adding 'biotite/sequence/io/fasta/convert.py'1404adding 'biotite/sequence/io/fasta/file.py'1405adding 'biotite/sequence/io/fastq/__init__.py'1406adding 'biotite/sequence/io/fastq/convert.py'1407adding 'biotite/sequence/io/fastq/file.py'1408adding 'biotite/sequence/io/genbank/__init__.py'1409adding 'biotite/sequence/io/genbank/annotation.py'1410adding 'biotite/sequence/io/genbank/file.py'1411adding 'biotite/sequence/io/genbank/metadata.py'1412adding 'biotite/sequence/io/genbank/sequence.py'1413adding 'biotite/sequence/io/gff/__init__.py'1414adding 'biotite/sequence/io/gff/convert.py'1415adding 'biotite/sequence/io/gff/file.py'1416adding 'biotite/sequence/phylo/__init__.py'1417adding 'biotite/sequence/phylo/nj.c'1418adding 'biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so'1419adding 'biotite/sequence/phylo/nj.pyi'1420adding 'biotite/sequence/phylo/nj.pyx'1421adding 'biotite/sequence/phylo/tree.c'1422adding 'biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so'1423adding 'biotite/sequence/phylo/tree.pyi'1424adding 'biotite/sequence/phylo/tree.pyx'1425adding 'biotite/sequence/phylo/upgma.c'1426adding 'biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so'1427adding 'biotite/sequence/phylo/upgma.pyi'1428adding 'biotite/sequence/phylo/upgma.pyx'1429adding 'biotite/structure/__init__.py'1430adding 'biotite/structure/atoms.py'1431adding 'biotite/structure/atoms.pyi'1432adding 'biotite/structure/basepairs.py'1433adding 'biotite/structure/bonds.py'1434adding 'biotite/structure/bonds.pyi'1435adding 'biotite/structure/box.py'1436adding 'biotite/structure/celllist.py'1437adding 'biotite/structure/celllist.pyi'1438adding 'biotite/structure/chains.py'1439adding 'biotite/structure/charges.py'1440adding 'biotite/structure/compare.py'1441adding 'biotite/structure/connect.py'1442adding 'biotite/structure/density.py'1443adding 'biotite/structure/dotbracket.py'1444adding 'biotite/structure/error.py'1445adding 'biotite/structure/filter.py'1446adding 'biotite/structure/geometry.py'1447adding 'biotite/structure/hbond.py'1448adding 'biotite/structure/integrity.py'1449adding 'biotite/structure/mechanics.py'1450adding 'biotite/structure/molecules.py'1451adding 'biotite/structure/pseudoknots.py'1452adding 'biotite/structure/rdf.py'1453adding 'biotite/structure/repair.py'1454adding 'biotite/structure/residues.py'1455adding 'biotite/structure/rings.py'1456adding 'biotite/structure/sasa.py'1457adding 'biotite/structure/segments.py'1458adding 'biotite/structure/sequence.py'1459adding 'biotite/structure/spacegroups.json'1460adding 'biotite/structure/spacegroups.license'1461adding 'biotite/structure/sse.py'1462adding 'biotite/structure/superimpose.py'1463adding 'biotite/structure/tm.py'1464adding 'biotite/structure/transform.py'1465adding 'biotite/structure/util.py'1466adding 'biotite/structure/alphabet/__init__.py'1467adding 'biotite/structure/alphabet/encoder.py'1468adding 'biotite/structure/alphabet/encoder_weights_3di.kerasify'1469adding 'biotite/structure/alphabet/i3d.py'1470adding 'biotite/structure/alphabet/layers.py'1471adding 'biotite/structure/alphabet/pb.license'1472adding 'biotite/structure/alphabet/pb.py'1473adding 'biotite/structure/alphabet/unkerasify.py'1474adding 'biotite/structure/graphics/__init__.py'1475adding 'biotite/structure/graphics/atoms.py'1476adding 'biotite/structure/graphics/rna.py'1477adding 'biotite/structure/info/__init__.py'1478adding 'biotite/structure/info/atom_masses.json'1479adding 'biotite/structure/info/atoms.py'1480adding 'biotite/structure/info/bonds.py'1481adding 'biotite/structure/info/ccd.py'1482adding 'biotite/structure/info/groups.py'1483adding 'biotite/structure/info/masses.py'1484adding 'biotite/structure/info/misc.py'1485adding 'biotite/structure/info/radii.py'1486adding 'biotite/structure/info/standardize.py'1487adding 'biotite/structure/io/__init__.py'1488adding 'biotite/structure/io/general.py'1489adding 'biotite/structure/io/trajfile.py'1490adding 'biotite/structure/io/util.py'1491adding 'biotite/structure/io/dcd/__init__.py'1492adding 'biotite/structure/io/dcd/file.py'1493adding 'biotite/structure/io/gro/__init__.py'1494adding 'biotite/structure/io/gro/file.py'1495adding 'biotite/structure/io/mol/__init__.py'1496adding 'biotite/structure/io/mol/convert.py'1497adding 'biotite/structure/io/mol/ctab.py'1498adding 'biotite/structure/io/mol/header.py'1499adding 'biotite/structure/io/mol/mol.py'1500adding 'biotite/structure/io/mol/sdf.py'1501adding 'biotite/structure/io/netcdf/__init__.py'1502adding 'biotite/structure/io/netcdf/file.py'1503adding 'biotite/structure/io/pdb/__init__.py'1504adding 'biotite/structure/io/pdb/convert.py'1505adding 'biotite/structure/io/pdb/file.py'1506adding 'biotite/structure/io/pdbqt/__init__.py'1507adding 'biotite/structure/io/pdbqt/convert.py'1508adding 'biotite/structure/io/pdbqt/file.py'1509adding 'biotite/structure/io/pdbx/__init__.py'1510adding 'biotite/structure/io/pdbx/bcif.py'1511adding 'biotite/structure/io/pdbx/cif.py'1512adding 'biotite/structure/io/pdbx/component.py'1513adding 'biotite/structure/io/pdbx/compress.py'1514adding 'biotite/structure/io/pdbx/convert.py'1515adding 'biotite/structure/io/pdbx/encoding.py'1516adding 'biotite/structure/io/trr/__init__.py'1517adding 'biotite/structure/io/trr/file.py'1518adding 'biotite/structure/io/xtc/__init__.py'1519adding 'biotite/structure/io/xtc/file.py'1520adding 'biotite-1.7.1.dist-info/licenses/LICENSE.rst'1521adding 'rust/lib.rs'1522adding 'rust/util.rs'1523adding 'rust/sequence/codec.rs'1524adding 'rust/sequence/mod.rs'1525adding 'rust/structure/bonds.rs'1526adding 'rust/structure/celllist.rs'1527adding 'rust/structure/charges.rs'1528adding 'rust/structure/connect.rs'1529adding 'rust/structure/mod.rs'1530adding 'rust/structure/sasa.rs'1531adding 'rust/structure/util.rs'1532adding 'rust/structure/io/mod.rs'1533adding 'rust/structure/io/pdb/file.rs'1534adding 'rust/structure/io/pdb/hybrid36.rs'1535adding 'rust/structure/io/pdb/mod.rs'1536adding 'rust/structure/io/pdbx/encoding.rs'1537adding 'rust/structure/io/pdbx/mod.rs'1538adding 'biotite-1.7.1.dist-info/METADATA'1539adding 'biotite-1.7.1.dist-info/WHEEL'1540adding 'biotite-1.7.1.dist-info/top_level.txt'1541adding 'biotite-1.7.1.dist-info/RECORD'1542removing build/bdist.linux-x86_64/wheel1543Successfully built biotite-1.7.1-cp314-cp314-linux_x86_64.whl1544Finished creating a wheel...1545Finished executing pypaBuildPhase1546buildPhase completed in 2 minutes 59 secondspythonRuntimeDepsCheckHook
1547Executing pythonRuntimeDepsCheck1548Checking runtime dependencies for biotite-1.7.1-cp314-cp314-linux_x86_64.whl1549Finished executing pythonRuntimeDepsCheckinstallPhase
1550Executing pypaInstallPhase1551Successfully installed biotite-1.7.1-cp314-cp314-linux_x86_64.whl1552Finished executing pypaInstallPhasepythonOutputDistPhase
1553Executing pythonOutputDistPhase1554Finished executing pythonOutputDistPhasefixupPhase
1555shrinking RPATHs of ELF executables and libraries in /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.11556shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/rust.cpython-314-x86_64-linux-gnu.so1557shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so1558shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so1559shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so1560shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so1561shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so1562shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so1563shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so1564shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so1565shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so1566shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so1567shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so1568shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so1569shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so1570shrinking /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so1571checking for references to /build/ in /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1...1572patching script interpreter paths in /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.11573stripping (with command strip and flags -S -p) in /nix/store/0dxwkyybrj2p59lwf0g1jqnpvdk64q1g-python3.14-biotite-1.7.1/lib1574shrinking RPATHs of ELF executables and libraries in /nix/store/wv46yn0ixd5apnl2n1d7g8612ci6d7ns-python3.14-biotite-1.7.1-dist1575checking for references to /build/ in /nix/store/wv46yn0ixd5apnl2n1d7g8612ci6d7ns-python3.14-biotite-1.7.1-dist...1576patching script interpreter paths in /nix/store/wv46yn0ixd5apnl2n1d7g8612ci6d7ns-python3.14-biotite-1.7.1-dist1577Executing pythonRemoveTestsDir1578Finished executing pythonRemoveTestsDirpythonImportsCheckPhase
1579Executing pythonImportsCheckPhase1580Check whether the following modules can be imported: biotite biotite.sequence biotite.structurepythonMetadataCheckPhase
1581Executing pythonMetadataCheckPhase