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usalign-20260921 checks.x86_64-linux.pkgs-usalign · build #86 · raw

unpackPhase
1unpacking source archive /nix/store/1yakjjglvbrf5468ibsin05w9jr58a1k-source2source root is source
configurePhase
3no configure script, doing nothing
buildPhase
4build flags: -j48 SHELL=/nix/store/svx59425zxp552p2b8gm11qj5r09b56i-bash-5.3p15/bin/bash CC=c++5c++ -O3 -ffast-math qTMclust.cpp -o qTMclust 6c++ -O3 -ffast-math USalign.cpp -o USalign 7c++ -O3 -ffast-math USFlexalign.cpp -o USFlexalign 8c++ -O3 -ffast-math TMalign.cpp -o TMalign 9c++ -O3 -ffast-math TMscore.cpp -o TMscore 10c++ -O3 -ffast-math MMalign.cpp -o MMalign 11c++ -O3 -ffast-math se.cpp -o se 12c++ -O3 -ffast-math pdb2xyz.cpp -o pdb2xyz 13c++ -O3 -ffast-math xyz_sfetch.cpp -o xyz_sfetch 14c++ -O3 -ffast-math pdb2fasta.cpp -o pdb2fasta 15c++ -O3 -ffast-math biounitasym.cpp -o biounitasym 16c++ -O3 -ffast-math pdb2ss.cpp -o pdb2ss 17c++ -O3 -ffast-math NWalign.cpp -o NWalign 18c++ -O3 -ffast-math HwRMSD.cpp -o HwRMSD 19c++ -O3 -ffast-math cif2pdb.cpp -o cif2pdb 20c++ -O3 -ffast-math pdbAtomName.cpp -o pdbAtomName 21c++ -O3 -ffast-math addChainID.cpp -o addChainID 22buildPhase completed in 36 seconds
fixupPhase
23shrinking RPATHs of ELF executables and libraries in /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-2026092124shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/qTMclust25shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/USalign26shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/TMalign27shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/TMscore28shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/MMalign29shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/se30shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/pdb2xyz31shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/xyz_sfetch32shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/pdb2fasta33shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/biounitasym34shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/pdb2ss35shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/NWalign36shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/HwRMSD37shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/cif2pdb38shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/pdbAtomName39shrinking /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin/addChainID40checking for references to /build/ in /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921...41patching script interpreter paths in /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-2026092142stripping (with command strip and flags -S -p) in /nix/store/gvz43ap6waqcdk5glazj9nbricg47y8f-usalign-20260921/bin