python3.14-dna-features-viewer-3.1.5
checks.x86_64-linux.pkgs-dna-features-viewer
· build #83
· raw
1Sourcing python-remove-tests-dir-hook2Sourcing python-catch-conflicts-hook.sh3Sourcing python-remove-bin-bytecode-hook.sh4Sourcing pypa-build-hook5Using pypaBuildPhase6Sourcing python-runtime-deps-check-hook7Using pythonRuntimeDepsCheckHook8Sourcing pypa-install-hook9Using pypaInstallPhase10Sourcing python-imports-check-hook.sh11Using pythonImportsCheckPhase12Sourcing python-metadata-check-hook.sh13Using pythonMetadataCheckPhase14Sourcing python-namespaces-hook15Sourcing python-catch-conflicts-hook.sh16Sourcing pytest-check-hook17Using pytestCheckPhase18Using checkPhaseThreadLimitHook
unpackPhase
19unpacking source archive /nix/store/axgdq6icxv756ga4nwikpwms4gmds98g-source20source root is source21setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/test_biotools.py"configurePhase
22no configure script, doing nothingbuildPhase
23Executing pypaBuildPhase24Creating a wheel...25pypa build flags: --no-isolation --outdir dist/ --wheel26* Getting build dependencies for wheel...27running egg_info28creating dna_features_viewer.egg-info29writing dna_features_viewer.egg-info/PKG-INFO30writing dependency_links to dna_features_viewer.egg-info/dependency_links.txt31writing requirements to dna_features_viewer.egg-info/requires.txt32writing top-level names to dna_features_viewer.egg-info/top_level.txt33writing manifest file 'dna_features_viewer.egg-info/SOURCES.txt'34reading manifest file 'dna_features_viewer.egg-info/SOURCES.txt'35adding license file 'LICENSE'36writing manifest file 'dna_features_viewer.egg-info/SOURCES.txt'37* Building wheel...38running bdist_wheel39running build40running build_py41creating build/lib/dna_features_viewer42copying dna_features_viewer/GraphicFeature.py -> build/lib/dna_features_viewer43copying dna_features_viewer/__init__.py -> build/lib/dna_features_viewer44copying dna_features_viewer/biotools.py -> build/lib/dna_features_viewer45copying dna_features_viewer/compute_features_levels.py -> build/lib/dna_features_viewer46copying dna_features_viewer/version.py -> build/lib/dna_features_viewer47creating build/lib/dna_features_viewer/BiopythonTranslator48copying dna_features_viewer/BiopythonTranslator/BiopythonTranslator.py -> build/lib/dna_features_viewer/BiopythonTranslator49copying dna_features_viewer/BiopythonTranslator/BiopythonTranslatorBase.py -> build/lib/dna_features_viewer/BiopythonTranslator50copying dna_features_viewer/BiopythonTranslator/BlackBoxlessLabelTranslator.py -> build/lib/dna_features_viewer/BiopythonTranslator51copying dna_features_viewer/BiopythonTranslator/__init__.py -> build/lib/dna_features_viewer/BiopythonTranslator52creating build/lib/dna_features_viewer/CircularGraphicRecord53copying dna_features_viewer/CircularGraphicRecord/ArrowWedge.py -> build/lib/dna_features_viewer/CircularGraphicRecord54copying dna_features_viewer/CircularGraphicRecord/CircularGraphicRecord.py -> build/lib/dna_features_viewer/CircularGraphicRecord55copying dna_features_viewer/CircularGraphicRecord/__init__.py -> build/lib/dna_features_viewer/CircularGraphicRecord56creating build/lib/dna_features_viewer/GraphicRecord57copying dna_features_viewer/GraphicRecord/BokehPlottableMixin.py -> build/lib/dna_features_viewer/GraphicRecord58copying dna_features_viewer/GraphicRecord/GraphicRecord.py -> build/lib/dna_features_viewer/GraphicRecord59copying dna_features_viewer/GraphicRecord/MatplotlibPlottableMixin.py -> build/lib/dna_features_viewer/GraphicRecord60copying dna_features_viewer/GraphicRecord/MultilinePlottableMixin.py -> build/lib/dna_features_viewer/GraphicRecord61copying dna_features_viewer/GraphicRecord/SequenceAndTranslationMixin.py -> build/lib/dna_features_viewer/GraphicRecord62copying dna_features_viewer/GraphicRecord/__init__.py -> build/lib/dna_features_viewer/GraphicRecord63running egg_info64writing dna_features_viewer.egg-info/PKG-INFO65writing dependency_links to dna_features_viewer.egg-info/dependency_links.txt66writing requirements to dna_features_viewer.egg-info/requires.txt67writing top-level names to dna_features_viewer.egg-info/top_level.txt68reading manifest file 'dna_features_viewer.egg-info/SOURCES.txt'69adding license file 'LICENSE'70writing manifest file 'dna_features_viewer.egg-info/SOURCES.txt'71installing to build/bdist.linux-x86_64/wheel72running install73running install_lib74creating build/bdist.linux-x86_64/wheel75creating build/bdist.linux-x86_64/wheel/dna_features_viewer76copying build/lib/dna_features_viewer/GraphicFeature.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer77copying build/lib/dna_features_viewer/__init__.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer78copying build/lib/dna_features_viewer/biotools.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer79copying build/lib/dna_features_viewer/compute_features_levels.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer80copying build/lib/dna_features_viewer/version.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer81creating build/bdist.linux-x86_64/wheel/dna_features_viewer/BiopythonTranslator82copying build/lib/dna_features_viewer/BiopythonTranslator/BiopythonTranslator.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/BiopythonTranslator83copying build/lib/dna_features_viewer/BiopythonTranslator/BiopythonTranslatorBase.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/BiopythonTranslator84copying build/lib/dna_features_viewer/BiopythonTranslator/BlackBoxlessLabelTranslator.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/BiopythonTranslator85copying build/lib/dna_features_viewer/BiopythonTranslator/__init__.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/BiopythonTranslator86creating build/bdist.linux-x86_64/wheel/dna_features_viewer/CircularGraphicRecord87copying build/lib/dna_features_viewer/CircularGraphicRecord/ArrowWedge.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/CircularGraphicRecord88copying build/lib/dna_features_viewer/CircularGraphicRecord/CircularGraphicRecord.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/CircularGraphicRecord89copying build/lib/dna_features_viewer/CircularGraphicRecord/__init__.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/CircularGraphicRecord90creating build/bdist.linux-x86_64/wheel/dna_features_viewer/GraphicRecord91copying build/lib/dna_features_viewer/GraphicRecord/BokehPlottableMixin.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/GraphicRecord92copying build/lib/dna_features_viewer/GraphicRecord/GraphicRecord.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/GraphicRecord93copying build/lib/dna_features_viewer/GraphicRecord/MatplotlibPlottableMixin.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/GraphicRecord94copying build/lib/dna_features_viewer/GraphicRecord/MultilinePlottableMixin.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/GraphicRecord95copying build/lib/dna_features_viewer/GraphicRecord/SequenceAndTranslationMixin.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/GraphicRecord96copying build/lib/dna_features_viewer/GraphicRecord/__init__.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/GraphicRecord97running install_egg_info98Copying dna_features_viewer.egg-info to build/bdist.linux-x86_64/wheel/./dna_features_viewer-3.1.5-py3.14.egg-info99running install_scripts100creating build/bdist.linux-x86_64/wheel/dna_features_viewer-3.1.5.dist-info/WHEEL101creating '/build/source/dist/.tmp-erh_uznc/dna_features_viewer-3.1.5-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it102adding 'dna_features_viewer/GraphicFeature.py'103adding 'dna_features_viewer/__init__.py'104adding 'dna_features_viewer/biotools.py'105adding 'dna_features_viewer/compute_features_levels.py'106adding 'dna_features_viewer/version.py'107adding 'dna_features_viewer/BiopythonTranslator/BiopythonTranslator.py'108adding 'dna_features_viewer/BiopythonTranslator/BiopythonTranslatorBase.py'109adding 'dna_features_viewer/BiopythonTranslator/BlackBoxlessLabelTranslator.py'110adding 'dna_features_viewer/BiopythonTranslator/__init__.py'111adding 'dna_features_viewer/CircularGraphicRecord/ArrowWedge.py'112adding 'dna_features_viewer/CircularGraphicRecord/CircularGraphicRecord.py'113adding 'dna_features_viewer/CircularGraphicRecord/__init__.py'114adding 'dna_features_viewer/GraphicRecord/BokehPlottableMixin.py'115adding 'dna_features_viewer/GraphicRecord/GraphicRecord.py'116adding 'dna_features_viewer/GraphicRecord/MatplotlibPlottableMixin.py'117adding 'dna_features_viewer/GraphicRecord/MultilinePlottableMixin.py'118adding 'dna_features_viewer/GraphicRecord/SequenceAndTranslationMixin.py'119adding 'dna_features_viewer/GraphicRecord/__init__.py'120adding 'dna_features_viewer-3.1.5.dist-info/licenses/LICENSE'121adding 'dna_features_viewer-3.1.5.dist-info/METADATA'122adding 'dna_features_viewer-3.1.5.dist-info/WHEEL'123adding 'dna_features_viewer-3.1.5.dist-info/top_level.txt'124adding 'dna_features_viewer-3.1.5.dist-info/RECORD'125removing build/bdist.linux-x86_64/wheel126Successfully built dna_features_viewer-3.1.5-py3-none-any.whl127Finished creating a wheel...128Finished executing pypaBuildPhasepythonRuntimeDepsCheckHook
129Executing pythonRuntimeDepsCheck130Checking runtime dependencies for dna_features_viewer-3.1.5-py3-none-any.whl131Finished executing pythonRuntimeDepsCheckinstallPhase
132Executing pypaInstallPhase133Successfully installed dna_features_viewer-3.1.5-py3-none-any.whl134Finished executing pypaInstallPhasepythonOutputDistPhase
135Executing pythonOutputDistPhase136Finished executing pythonOutputDistPhasefixupPhase
137shrinking RPATHs of ELF executables and libraries in /nix/store/8017089lmkc65qvsms31lgnnxkm9i64g-python3.14-dna-features-viewer-3.1.5138checking for references to /build/ in /nix/store/8017089lmkc65qvsms31lgnnxkm9i64g-python3.14-dna-features-viewer-3.1.5...139patching script interpreter paths in /nix/store/8017089lmkc65qvsms31lgnnxkm9i64g-python3.14-dna-features-viewer-3.1.5140stripping (with command strip and flags -S -p) in /nix/store/8017089lmkc65qvsms31lgnnxkm9i64g-python3.14-dna-features-viewer-3.1.5/lib141shrinking RPATHs of ELF executables and libraries in /nix/store/0f4v8pvw4wpzf36nsj6rcd5lp1yd8fyq-python3.14-dna-features-viewer-3.1.5-dist142checking for references to /build/ in /nix/store/0f4v8pvw4wpzf36nsj6rcd5lp1yd8fyq-python3.14-dna-features-viewer-3.1.5-dist...143patching script interpreter paths in /nix/store/0f4v8pvw4wpzf36nsj6rcd5lp1yd8fyq-python3.14-dna-features-viewer-3.1.5-dist144Executing pythonRemoveTestsDir145Finished executing pythonRemoveTestsDirinstallCheckPhase
146setting known thread variables to default: 1147 OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1148no Makefile or custom installCheckPhase, doing nothingpythonImportsCheckPhase
149Executing pythonImportsCheckPhase150Check whether the following modules can be imported: dna_features_viewer151mkdir -p failed for path /homeless-shelter/.config/matplotlib: [Errno 13] Permission denied: '/homeless-shelter'152Matplotlib created a temporary cache directory at /build/matplotlib-7w3x7a99 because there was an issue with the default path ({configdir}); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.pythonMetadataCheckPhase
153Executing pythonMetadataCheckPhasepytestCheckPhase
154Executing pytestCheckPhase155setting known thread variables to default: 1156 OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1157pytest flags: -m pytest tests158============================= test session starts ==============================159platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0160rootdir: /build/source161configfile: pyproject.toml162collected 20 items 163164tests/test_basics.py .................. [ 90%]165tests/test_biotools.py .. [100%]166167============================== 20 passed in 4.77s ==============================168Finished executing pytestCheckPhase