these 2 derivations will be built:
  /nix/store/z8i12yfjpzaja17b39258mnd265vhlgm-source.drv
  /nix/store/1kc92vi040j82ai4nz0sxiwkb7l3jqp1-usalign-20260911.drv
building '/nix/store/b7q2jjffkr57addm8lza8cva4lychi18-source.drv'
source> structuredAttrs is enabled
source> 
source> trying https://github.com/pylelab/USalign/archive/fcb0f9d921415a2095bc509975db7fc1e968af1d.tar.gz
source>   % Total    % Received % Xferd  Average Speed  Time    Time    Time   Current
source>                                  Dload  Upload  Total   Spent   Left   Speed
source> 
source>   0      0   0      0   0      0      0      0                              0
source>   0      0   0      0   0      0      0      0                              0
source>   0      0   0      0   0      0      0      0                              0
source> 
source>   0      0   0      0   0      0      0      0                              0
source> 100 278.7k   0 278.7k   0      0 440.3k      0                              0
source> 100 278.7k   0 278.7k   0      0 440.3k      0                              0
source> 100 278.7k   0 278.7k   0      0 440.2k      0                              0
source> unpacking source archive /build/download.tar.gz
building '/nix/store/1kc92vi040j82ai4nz0sxiwkb7l3jqp1-usalign-20260911.drv'
usalign-20260911> Running phase: unpackPhase
usalign-20260911> unpacking source archive /nix/store/4h9167f6827iqf8k2db5hjan8s87brym-source
usalign-20260911> source root is source
usalign-20260911> Running phase: patchPhase
usalign-20260911> Running phase: updateAutotoolsGnuConfigScriptsPhase
usalign-20260911> Running phase: configurePhase
usalign-20260911> no configure script, doing nothing
usalign-20260911> Running phase: buildPhase
usalign-20260911> build flags: -j48 SHELL=/nix/store/svx59425zxp552p2b8gm11qj5r09b56i-bash-5.3p15/bin/bash CC=c++
usalign-20260911> c++ -O3 -ffast-math qTMclust.cpp -o qTMclust 
usalign-20260911> c++ -O3 -ffast-math USalign.cpp -o USalign 
usalign-20260911> c++ -O3 -ffast-math USFlexalign.cpp -o USFlexalign 
usalign-20260911> c++ -O3 -ffast-math TMalign.cpp -o TMalign 
usalign-20260911> c++ -O3 -ffast-math TMscore.cpp -o TMscore 
usalign-20260911> c++ -O3 -ffast-math MMalign.cpp -o MMalign 
usalign-20260911> c++ -O3 -ffast-math se.cpp -o se 
usalign-20260911> c++ -O3 -ffast-math pdb2xyz.cpp -o pdb2xyz 
usalign-20260911> c++ -O3 -ffast-math xyz_sfetch.cpp -o xyz_sfetch 
usalign-20260911> c++ -O3 -ffast-math pdb2fasta.cpp -o pdb2fasta 
usalign-20260911> c++ -O3 -ffast-math biounitasym.cpp -o biounitasym 
usalign-20260911> c++ -O3 -ffast-math pdb2ss.cpp -o pdb2ss 
usalign-20260911> c++ -O3 -ffast-math NWalign.cpp -o NWalign 
usalign-20260911> c++ -O3 -ffast-math HwRMSD.cpp -o HwRMSD 
usalign-20260911> c++ -O3 -ffast-math cif2pdb.cpp -o cif2pdb 
usalign-20260911> c++ -O3 -ffast-math pdbAtomName.cpp -o pdbAtomName 
usalign-20260911> c++ -O3 -ffast-math addChainID.cpp -o addChainID 
usalign-20260911> buildPhase completed in 1 minutes 42 seconds
usalign-20260911> Running phase: installPhase
usalign-20260911> Running phase: fixupPhase
usalign-20260911> shrinking RPATHs of ELF executables and libraries in /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/qTMclust
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/USalign
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/TMalign
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/TMscore
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/MMalign
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/se
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/pdb2xyz
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/xyz_sfetch
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/pdb2fasta
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/biounitasym
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/pdb2ss
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/NWalign
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/HwRMSD
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/cif2pdb
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/pdbAtomName
usalign-20260911> shrinking /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin/addChainID
usalign-20260911> checking for references to /build/ in /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911...
usalign-20260911> patching script interpreter paths in /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911
usalign-20260911> stripping (with command strip and flags -S -p) in /nix/store/9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911/bin

post-build step Route build to niks3: ok
Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org
time=2026-09-21T21:18:21.673+09:00 level=INFO msg="Uploading 1 paths to niks3.sjanglab.org (6 already cached)"
time=2026-09-21T21:18:21.673+09:00 level=INFO msg="Uploading 9w2gmi4x7ydnq3dbqrifdls68wrfz37q-usalign-20260911 (5.3MB)"
time=2026-09-21T21:18:23.033+09:00 level=INFO msg="Uploading 1 narinfos"
time=2026-09-21T21:18:23.812+09:00 level=INFO msg="Upload complete. (2.249s)"