these 10 derivations will be built: /nix/store/68bvy0h06css7vzmyxdg0i2dsb4ma65p-biopython-1.87.tar.gz.drv /nix/store/74gyr3c7n5k0s330b5h9ca5xpfxjqsc8-python3.14-biopython-1.87.drv /nix/store/zyi5w7iqx5nfw7qk8bv7fjj3dh19cjb9-opencloning_linkml-1.0.0.tar.gz.drv /nix/store/h7sn1by7gyn2qsqnkc9dxq2r0wdajgdi-python3.14-opencloning-linkml-1.0.0.drv /nix/store/kal39mv4xzshrbd4whj8sdwbkl0b08vp-seguid-0.2.1.tar.gz.drv /nix/store/l677hazl0lc9ykfgxraq5hdfgl96q3ij-sgffp-0.22.1.tar.gz.drv /nix/store/lnp8bwvv654mbw27wz72c3wxwr63v0dn-python3.14-seguid-0.2.1.drv /nix/store/pm16jmipjcasxwk9brcrn1nhyhs4by3a-pydna-5.5.16.tar.gz.drv /nix/store/vbpwpj1almgrr5rhqf8kl9rx2j608b53-python3.14-sgffp-0.22.1.drv /nix/store/z748a4mqd31aqvqs83qfg9v82bigvzjw-python3.14-pydna-5.5.16.drv these 10 paths will be fetched (12.7 MiB download, 58.8 MiB unpacked): /nix/store/b1xz9sdqiqwp9hry2cqk9s119jhp87z7-python3.14-cython-3.2.5 /nix/store/9726sl5xcs8527il2rkaqk50cc1xgj2r-python3.14-dunamai-1.25.0 /nix/store/2bcvqa8swvhwhakryyd7gahsklhnabdi-python3.14-networkx-3.6.1 /nix/store/s3ck75k46x650gp5ivx0fyws2kaahxhn-python3.14-poetry-core-2.4.1 /nix/store/p6795hng4fdk71hbxp9w5rz9pvfchg1v-python3.14-poetry-dynamic-versioning-1.9.1 /nix/store/b14r21sdzg79l5bhgak3qr8jji1ci742-python3.14-prettytable-3.18.0 /nix/store/6sm8k114zxlpdrhqij5cm1gwifr47y2x-python3.14-pydivsufsort-0.0.20 /nix/store/w7g0g20dbbkjp59s5gx5k93r0sh7qn2a-python3.14-pyfiglet-1.0.4 /nix/store/2dk27gn59hysnaz50sqij3dl1gpmakd8-python3.14-regex-2026.7.11 /nix/store/c0ninppy4q45z6lgp6fkzlwnjnjg26f3-python3.14-xmltodict-1.0.4 building '/nix/store/8vg26mzrjh1rjk1m6ic7ijd7qrpqxn5b-pydna-5.5.16.tar.gz.drv' building '/nix/store/sxkchdiyaq5s5sfc9y7690yxq95y85id-biopython-1.87.tar.gz.drv' building '/nix/store/za5pdkhn3af1jhy33i33iqqnvaagmi4h-opencloning_linkml-1.0.0.tar.gz.drv' building '/nix/store/4vr3s0aq085vbz7p300pqz926c1kzrm1-seguid-0.2.1.tar.gz.drv' building '/nix/store/ic9gi3ymh3nv243g1q58lvvqniawq5ay-sgffp-0.22.1.tar.gz.drv' biopython-1.87.tar.gz> structuredAttrs is enabled biopython-1.87.tar.gz> biopython-1.87.tar.gz> trying https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.87.tar.gz biopython-1.87.tar.gz> % Total % Received % Xferd Average Speed Time Time Time Current biopython-1.87.tar.gz> Dload Upload Total Spent Left Speed biopython-1.87.tar.gz> opencloning_linkml-1.0.0.tar.gz> structuredAttrs is enabled opencloning_linkml-1.0.0.tar.gz> opencloning_linkml-1.0.0.tar.gz> trying https://files.pythonhosted.org/packages/source/o/opencloning_linkml/opencloning_linkml-1.0.0.tar.gz pydna-5.5.16.tar.gz> structuredAttrs is enabled pydna-5.5.16.tar.gz> pydna-5.5.16.tar.gz> trying https://files.pythonhosted.org/packages/source/p/pydna/pydna-5.5.16.tar.gz pydna-5.5.16.tar.gz> % Total % Received % Xferd Average Speed Time Time Time Current pydna-5.5.16.tar.gz> Dload Upload Total Spent Left Speed pydna-5.5.16.tar.gz> seguid-0.2.1.tar.gz> structuredAttrs is enabled sgffp-0.22.1.tar.gz> structuredAttrs is enabled opencloning_linkml-1.0.0.tar.gz> % Total % Received % Xferd Average Speed Time Time Time Current opencloning_linkml-1.0.0.tar.gz> Dload Upload Total Spent Left Speed opencloning_linkml-1.0.0.tar.gz> seguid-0.2.1.tar.gz> seguid-0.2.1.tar.gz> trying https://files.pythonhosted.org/packages/source/s/seguid/seguid-0.2.1.tar.gz seguid-0.2.1.tar.gz> % Total % Received % Xferd Average Speed Time Time Time Current seguid-0.2.1.tar.gz> Dload Upload Total Spent Left Speed seguid-0.2.1.tar.gz> sgffp-0.22.1.tar.gz> sgffp-0.22.1.tar.gz> trying https://files.pythonhosted.org/packages/source/s/sgffp/sgffp-0.22.1.tar.gz biopython-1.87.tar.gz> 0 0 0 0 0 0 0 0 0 biopython-1.87.tar.gz> 0 0 0 0 0 0 0 0 0 biopython-1.87.tar.gz> 0 0 0 0 0 0 0 0 0 biopython-1.87.tar.gz> pydna-5.5.16.tar.gz> 0 0 0 0 0 0 0 0 0 pydna-5.5.16.tar.gz> 0 0 0 0 0 0 0 0 0 pydna-5.5.16.tar.gz> 0 0 0 0 0 0 0 0 0 pydna-5.5.16.tar.gz> seguid-0.2.1.tar.gz> 0 0 0 0 0 0 0 0 0 seguid-0.2.1.tar.gz> 0 0 0 0 0 0 0 0 0 seguid-0.2.1.tar.gz> 0 0 0 0 0 0 0 0 0 seguid-0.2.1.tar.gz> sgffp-0.22.1.tar.gz> % Total % Received % Xferd Average Speed Time Time Time Current sgffp-0.22.1.tar.gz> Dload Upload Total Spent Left Speed sgffp-0.22.1.tar.gz> seguid-0.2.1.tar.gz> 0 0 0 0 0 0 0 0 0 seguid-0.2.1.tar.gz> 100 11763 100 11763 0 0 49110 0 0 seguid-0.2.1.tar.gz> 100 11763 100 11763 0 0 49096 0 0 seguid-0.2.1.tar.gz> 100 11763 100 11763 0 0 49083 0 0 building '/nix/store/lnp8bwvv654mbw27wz72c3wxwr63v0dn-python3.14-seguid-0.2.1.drv' opencloning_linkml-1.0.0.tar.gz> 0 0 0 0 0 0 0 0 0 opencloning_linkml-1.0.0.tar.gz> 0 0 0 0 0 0 0 0 0 opencloning_linkml-1.0.0.tar.gz> 0 0 0 0 0 0 0 0 0 opencloning_linkml-1.0.0.tar.gz> python3.14-seguid-0.2.1> Sourcing python-remove-tests-dir-hook python3.14-seguid-0.2.1> Sourcing python-catch-conflicts-hook.sh python3.14-seguid-0.2.1> Sourcing python-remove-bin-bytecode-hook.sh python3.14-seguid-0.2.1> Sourcing pypa-build-hook python3.14-seguid-0.2.1> Using pypaBuildPhase python3.14-seguid-0.2.1> Sourcing python-runtime-deps-check-hook python3.14-seguid-0.2.1> Using pythonRuntimeDepsCheckHook python3.14-seguid-0.2.1> Sourcing pypa-install-hook python3.14-seguid-0.2.1> Using pypaInstallPhase python3.14-seguid-0.2.1> Sourcing python-imports-check-hook.sh python3.14-seguid-0.2.1> Using pythonImportsCheckPhase python3.14-seguid-0.2.1> Sourcing python-metadata-check-hook.sh python3.14-seguid-0.2.1> Using pythonMetadataCheckPhase python3.14-seguid-0.2.1> Sourcing python-namespaces-hook python3.14-seguid-0.2.1> Sourcing python-catch-conflicts-hook.sh python3.14-seguid-0.2.1> Running phase: unpackPhase python3.14-seguid-0.2.1> unpacking source archive /nix/store/wkjr82wnblab2kk4xy57c8hkr6abq6gg-seguid-0.2.1.tar.gz pydna-5.5.16.tar.gz> 0 0 0 0 0 0 0 0 0 pydna-5.5.16.tar.gz> 100 185.3k 100 185.3k 0 0 358.9k 0 0 pydna-5.5.16.tar.gz> 100 185.3k 100 185.3k 0 0 358.9k 0 0 pydna-5.5.16.tar.gz> 100 185.3k 100 185.3k 0 0 358.8k 0 0 python3.14-seguid-0.2.1> source root is seguid-0.2.1 python3.14-seguid-0.2.1> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "seguid-0.2.1/src/seguid/_tables.py" python3.14-seguid-0.2.1> Running phase: patchPhase python3.14-seguid-0.2.1> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-seguid-0.2.1> Running phase: configurePhase sgffp-0.22.1.tar.gz> 0 0 0 0 0 0 0 0 0 sgffp-0.22.1.tar.gz> 0 0 0 0 0 0 0 0 0 sgffp-0.22.1.tar.gz> 0 0 0 0 0 0 0 0 0 sgffp-0.22.1.tar.gz> python3.14-seguid-0.2.1> no configure script, doing nothing python3.14-seguid-0.2.1> Running phase: buildPhase python3.14-seguid-0.2.1> Executing pypaBuildPhase python3.14-seguid-0.2.1> Creating a wheel... python3.14-seguid-0.2.1> pypa build flags: --no-isolation --outdir dist/ --wheel opencloning_linkml-1.0.0.tar.gz> 0 0 0 0 0 0 0 0 0 opencloning_linkml-1.0.0.tar.gz> 100 144.6k 100 144.6k 0 0 271.9k 0 0 opencloning_linkml-1.0.0.tar.gz> 100 144.6k 100 144.6k 0 0 271.8k 0 0 opencloning_linkml-1.0.0.tar.gz> 100 144.6k 100 144.6k 0 0 271.8k 0 0 building '/nix/store/h7sn1by7gyn2qsqnkc9dxq2r0wdajgdi-python3.14-opencloning-linkml-1.0.0.drv' python3.14-seguid-0.2.1> * Getting build dependencies for wheel... python3.14-opencloning-linkml-1.0.0> Sourcing python-remove-tests-dir-hook python3.14-opencloning-linkml-1.0.0> Sourcing python-catch-conflicts-hook.sh python3.14-opencloning-linkml-1.0.0> Sourcing python-remove-bin-bytecode-hook.sh python3.14-opencloning-linkml-1.0.0> Sourcing pypa-build-hook python3.14-opencloning-linkml-1.0.0> Using pypaBuildPhase python3.14-opencloning-linkml-1.0.0> Sourcing python-runtime-deps-check-hook python3.14-opencloning-linkml-1.0.0> Using pythonRuntimeDepsCheckHook python3.14-opencloning-linkml-1.0.0> Sourcing pypa-install-hook python3.14-opencloning-linkml-1.0.0> Using pypaInstallPhase python3.14-opencloning-linkml-1.0.0> Sourcing python-imports-check-hook.sh python3.14-opencloning-linkml-1.0.0> Using pythonImportsCheckPhase python3.14-opencloning-linkml-1.0.0> Sourcing python-metadata-check-hook.sh python3.14-opencloning-linkml-1.0.0> Using pythonMetadataCheckPhase python3.14-opencloning-linkml-1.0.0> Sourcing python-namespaces-hook python3.14-opencloning-linkml-1.0.0> Sourcing python-catch-conflicts-hook.sh python3.14-opencloning-linkml-1.0.0> Running phase: unpackPhase python3.14-opencloning-linkml-1.0.0> unpacking source archive /nix/store/hvwcsn7mb58vwz18v8jfrjdg70133yz8-opencloning_linkml-1.0.0.tar.gz python3.14-opencloning-linkml-1.0.0> source root is opencloning_linkml-1.0.0 biopython-1.87.tar.gz> 0 0 0 0 0 0 0 0 0 biopython-1.87.tar.gz> 100 18.93M 100 18.93M 0 0 23.36M 0 0 biopython-1.87.tar.gz> 100 18.93M 100 18.93M 0 0 23.36M 0 0 biopython-1.87.tar.gz> 100 18.93M 100 18.93M 0 0 23.36M 0 0 building '/nix/store/74gyr3c7n5k0s330b5h9ca5xpfxjqsc8-python3.14-biopython-1.87.drv' python3.14-opencloning-linkml-1.0.0> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "opencloning_linkml-1.0.0/src/opencloning_linkml/schema/opencloning_linkml.yaml" python3.14-opencloning-linkml-1.0.0> Running phase: patchPhase python3.14-opencloning-linkml-1.0.0> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-opencloning-linkml-1.0.0> Running phase: configurePhase python3.14-opencloning-linkml-1.0.0> no configure script, doing nothing python3.14-opencloning-linkml-1.0.0> Running phase: buildPhase python3.14-opencloning-linkml-1.0.0> Executing pypaBuildPhase python3.14-opencloning-linkml-1.0.0> Setting POETRY_DYNAMIC_VERSIONING_BYPASS to 1.0.0 python3.14-opencloning-linkml-1.0.0> Creating a wheel... python3.14-opencloning-linkml-1.0.0> pypa build flags: --no-isolation --outdir dist/ --wheel python3.14-seguid-0.2.1> * Building wheel... sgffp-0.22.1.tar.gz> 0 0 0 0 0 0 0 0 0 sgffp-0.22.1.tar.gz> 100 409.4k 100 409.4k 0 0 480.3k 0 0 sgffp-0.22.1.tar.gz> 100 409.4k 100 409.4k 0 0 480.3k 0 0 sgffp-0.22.1.tar.gz> 100 409.4k 100 409.4k 0 0 480.2k 0 0 building '/nix/store/vbpwpj1almgrr5rhqf8kl9rx2j608b53-python3.14-sgffp-0.22.1.drv' python3.14-biopython-1.87> Sourcing python-remove-tests-dir-hook python3.14-biopython-1.87> Sourcing python-catch-conflicts-hook.sh python3.14-biopython-1.87> Sourcing python-remove-bin-bytecode-hook.sh python3.14-biopython-1.87> Sourcing pypa-build-hook python3.14-biopython-1.87> Using pypaBuildPhase python3.14-biopython-1.87> Sourcing python-runtime-deps-check-hook python3.14-biopython-1.87> Using pythonRuntimeDepsCheckHook python3.14-biopython-1.87> Sourcing pypa-install-hook python3.14-biopython-1.87> Using pypaInstallPhase python3.14-biopython-1.87> Sourcing python-imports-check-hook.sh python3.14-biopython-1.87> Using pythonImportsCheckPhase python3.14-biopython-1.87> Sourcing python-metadata-check-hook.sh python3.14-biopython-1.87> Using pythonMetadataCheckPhase python3.14-biopython-1.87> Sourcing python-namespaces-hook python3.14-biopython-1.87> Sourcing python-catch-conflicts-hook.sh python3.14-biopython-1.87> Using checkPhaseThreadLimitHook python3.14-opencloning-linkml-1.0.0> * Getting build dependencies for wheel... python3.14-sgffp-0.22.1> Sourcing python-remove-tests-dir-hook python3.14-sgffp-0.22.1> Sourcing python-catch-conflicts-hook.sh python3.14-sgffp-0.22.1> Sourcing python-remove-bin-bytecode-hook.sh python3.14-sgffp-0.22.1> Sourcing pypa-build-hook python3.14-sgffp-0.22.1> Using pypaBuildPhase python3.14-sgffp-0.22.1> Sourcing python-runtime-deps-check-hook python3.14-sgffp-0.22.1> Using pythonRuntimeDepsCheckHook python3.14-sgffp-0.22.1> Sourcing pypa-install-hook python3.14-sgffp-0.22.1> Using pypaInstallPhase python3.14-sgffp-0.22.1> Sourcing python-imports-check-hook.sh python3.14-sgffp-0.22.1> Using pythonImportsCheckPhase python3.14-sgffp-0.22.1> Sourcing python-metadata-check-hook.sh python3.14-sgffp-0.22.1> Using pythonMetadataCheckPhase python3.14-sgffp-0.22.1> Sourcing python-namespaces-hook python3.14-sgffp-0.22.1> Sourcing python-catch-conflicts-hook.sh python3.14-biopython-1.87> Running phase: unpackPhase python3.14-biopython-1.87> unpacking source archive /nix/store/sf2zkvyi3gd5jpsya9rxkpsyvk5l7bpn-biopython-1.87.tar.gz python3.14-sgffp-0.22.1> Running phase: unpackPhase python3.14-seguid-0.2.1> Successfully built seguid-0.2.1-py3-none-any.whl python3.14-sgffp-0.22.1> unpacking source archive /nix/store/q7279ifaij9j8vwxvhja70fg77s6b3n5-sgffp-0.22.1.tar.gz python3.14-sgffp-0.22.1> source root is sgffp-0.22.1 python3.14-seguid-0.2.1> Finished creating a wheel... python3.14-seguid-0.2.1> Finished executing pypaBuildPhase python3.14-seguid-0.2.1> Running phase: pythonRuntimeDepsCheckHook python3.14-sgffp-0.22.1> setting SOURCE_DATE_EPOCH to timestamp 1580601600 of file "sgffp-0.22.1/uv.lock" python3.14-seguid-0.2.1> Executing pythonRuntimeDepsCheck python3.14-seguid-0.2.1> Checking runtime dependencies for seguid-0.2.1-py3-none-any.whl python3.14-sgffp-0.22.1> Running phase: patchPhase python3.14-sgffp-0.22.1> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-sgffp-0.22.1> Running phase: configurePhase python3.14-sgffp-0.22.1> no configure script, doing nothing python3.14-sgffp-0.22.1> Running phase: buildPhase python3.14-sgffp-0.22.1> Executing pypaBuildPhase python3.14-sgffp-0.22.1> Creating a wheel... python3.14-sgffp-0.22.1> pypa build flags: --no-isolation --outdir dist/ --wheel python3.14-opencloning-linkml-1.0.0> * Building wheel... python3.14-seguid-0.2.1> Finished executing pythonRuntimeDepsCheck python3.14-seguid-0.2.1> Running phase: installPhase python3.14-seguid-0.2.1> Executing pypaInstallPhase python3.14-sgffp-0.22.1> * Getting build dependencies for wheel... python3.14-biopython-1.87> source root is biopython-1.87 python3.14-biopython-1.87> setting SOURCE_DATE_EPOCH to timestamp 1774869664 of file "biopython-1.87/setup.cfg" python3.14-biopython-1.87> Running phase: patchPhase python3.14-biopython-1.87> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-biopython-1.87> Running phase: configurePhase python3.14-seguid-0.2.1> Successfully installed seguid-0.2.1-py3-none-any.whl python3.14-seguid-0.2.1> Finished executing pypaInstallPhase python3.14-seguid-0.2.1> Running phase: pythonOutputDistPhase python3.14-seguid-0.2.1> Executing pythonOutputDistPhase python3.14-seguid-0.2.1> Finished executing pythonOutputDistPhase python3.14-seguid-0.2.1> Running phase: fixupPhase python3.14-sgffp-0.22.1> * Building wheel... python3.14-biopython-1.87> no configure script, doing nothing python3.14-biopython-1.87> Running phase: buildPhase python3.14-biopython-1.87> Executing pypaBuildPhase python3.14-seguid-0.2.1> shrinking RPATHs of ELF executables and libraries in /nix/store/ngjj9jfcbkqxr5biqcbaa6i0psjmz3jw-python3.14-seguid-0.2.1 python3.14-biopython-1.87> Creating a wheel... python3.14-biopython-1.87> pypa build flags: --no-isolation --outdir dist/ --wheel python3.14-seguid-0.2.1> checking for references to /build/ in /nix/store/ngjj9jfcbkqxr5biqcbaa6i0psjmz3jw-python3.14-seguid-0.2.1... python3.14-seguid-0.2.1> patching script interpreter paths in /nix/store/ngjj9jfcbkqxr5biqcbaa6i0psjmz3jw-python3.14-seguid-0.2.1 python3.14-seguid-0.2.1> stripping (with command strip and flags -S -p) in /nix/store/ngjj9jfcbkqxr5biqcbaa6i0psjmz3jw-python3.14-seguid-0.2.1/lib python3.14-seguid-0.2.1> shrinking RPATHs of ELF executables and libraries in /nix/store/nv5k00gc7j01dvj5sqvwy6apa8rws6li-python3.14-seguid-0.2.1-dist python3.14-seguid-0.2.1> checking for references to /build/ in /nix/store/nv5k00gc7j01dvj5sqvwy6apa8rws6li-python3.14-seguid-0.2.1-dist... python3.14-seguid-0.2.1> patching script interpreter paths in /nix/store/nv5k00gc7j01dvj5sqvwy6apa8rws6li-python3.14-seguid-0.2.1-dist python3.14-biopython-1.87> * Getting build dependencies for wheel... python3.14-seguid-0.2.1> Executing pythonRemoveTestsDir python3.14-seguid-0.2.1> Finished executing pythonRemoveTestsDir python3.14-opencloning-linkml-1.0.0> Successfully built opencloning_linkml-1.0.0-py3-none-any.whl python3.14-seguid-0.2.1> Running phase: installCheckPhase python3.14-seguid-0.2.1> no Makefile or custom installCheckPhase, doing nothing python3.14-seguid-0.2.1> Running phase: pythonCatchConflictsPhase python3.14-sgffp-0.22.1> Successfully built sgffp-0.22.1-py3-none-any.whl python3.14-opencloning-linkml-1.0.0> Finished creating a wheel... python3.14-opencloning-linkml-1.0.0> Finished executing pypaBuildPhase python3.14-opencloning-linkml-1.0.0> Running phase: pythonRuntimeDepsCheckHook python3.14-opencloning-linkml-1.0.0> Executing pythonRuntimeDepsCheck python3.14-opencloning-linkml-1.0.0> Checking runtime dependencies for opencloning_linkml-1.0.0-py3-none-any.whl python3.14-sgffp-0.22.1> Finished creating a wheel... python3.14-sgffp-0.22.1> Finished executing pypaBuildPhase python3.14-sgffp-0.22.1> Running phase: pythonRuntimeDepsCheckHook python3.14-sgffp-0.22.1> Executing pythonRuntimeDepsCheck python3.14-sgffp-0.22.1> Checking runtime dependencies for sgffp-0.22.1-py3-none-any.whl python3.14-seguid-0.2.1> Running phase: pythonRemoveBinBytecodePhase python3.14-seguid-0.2.1> Running phase: pythonImportsCheckPhase python3.14-seguid-0.2.1> Executing pythonImportsCheckPhase python3.14-seguid-0.2.1> Check whether the following modules can be imported: seguid python3.14-biopython-1.87> /nix/store/gyficbimx12q5975523ps3kjzz8ys4pq-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/config/pyprojecttoml.py:72: _ExperimentalConfiguration: `[tool.setuptools.ext-modules]` in `pyproject.toml` is still *experimental* and likely to change in future releases. python3.14-biopython-1.87> config = read_configuration(filepath, True, ignore_option_errors, dist) python3.14-biopython-1.87> running egg_info python3.14-biopython-1.87> writing biopython.egg-info/PKG-INFO python3.14-biopython-1.87> writing dependency_links to biopython.egg-info/dependency_links.txt python3.14-biopython-1.87> writing requirements to biopython.egg-info/requires.txt python3.14-biopython-1.87> writing top-level names to biopython.egg-info/top_level.txt python3.14-opencloning-linkml-1.0.0> Finished executing pythonRuntimeDepsCheck python3.14-opencloning-linkml-1.0.0> Running phase: installPhase python3.14-biopython-1.87> reading manifest file 'biopython.egg-info/SOURCES.txt' python3.14-opencloning-linkml-1.0.0> Executing pypaInstallPhase python3.14-biopython-1.87> reading manifest template 'MANIFEST.in' python3.14-biopython-1.87> warning: no previously-included files found matching 'Doc/_build' python3.14-biopython-1.87> warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' python3.14-biopython-1.87> warning: no previously-included files matching '*.pyc' found anywhere in distribution python3.14-biopython-1.87> warning: no previously-included files matching '*.pyo' found anywhere in distribution python3.14-biopython-1.87> warning: no previously-included files matching '*.py{}' found anywhere in distribution python3.14-biopython-1.87> warning: no previously-included files matching '*.py-e' found anywhere in distribution python3.14-biopython-1.87> warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' python3.14-biopython-1.87> adding license file 'LICENSE.rst' python3.14-biopython-1.87> writing manifest file 'biopython.egg-info/SOURCES.txt' python3.14-biopython-1.87> :18: DeprecationWarning: Invoking setup.py is deprecated and will be removed in a future release of Biopython. python3.14-biopython-1.87> Please use `pip install` or `python -m build` instead of `python setup.py` commands. python3.14-biopython-1.87> For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/ python3.14-biopython-1.87> python3.14-biopython-1.87> DEPRECATION WARNING: Invoking setup.py is deprecated and will be removed in a future release of Biopython. python3.14-biopython-1.87> Please use `pip install` or `python -m build` instead of `python setup.py` commands. python3.14-biopython-1.87> For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/ python3.14-biopython-1.87> python3.14-seguid-0.2.1> Running phase: pythonMetadataCheckPhase python3.14-seguid-0.2.1> Executing pythonMetadataCheckPhase python3.14-biopython-1.87> * Building wheel... python3.14-sgffp-0.22.1> Finished executing pythonRuntimeDepsCheck python3.14-sgffp-0.22.1> Running phase: installPhase python3.14-sgffp-0.22.1> Executing pypaInstallPhase python3.14-opencloning-linkml-1.0.0> Successfully installed opencloning_linkml-1.0.0-py3-none-any.whl python3.14-opencloning-linkml-1.0.0> Finished executing pypaInstallPhase python3.14-opencloning-linkml-1.0.0> Running phase: pythonOutputDistPhase python3.14-opencloning-linkml-1.0.0> Executing pythonOutputDistPhase python3.14-opencloning-linkml-1.0.0> Finished executing pythonOutputDistPhase python3.14-opencloning-linkml-1.0.0> Running phase: fixupPhase python3.14-opencloning-linkml-1.0.0> shrinking RPATHs of ELF executables and libraries in /nix/store/31zrrvz0pwc2yr5nqsr2bbag3zbls92j-python3.14-opencloning-linkml-1.0.0 python3.14-opencloning-linkml-1.0.0> checking for references to /build/ in /nix/store/31zrrvz0pwc2yr5nqsr2bbag3zbls92j-python3.14-opencloning-linkml-1.0.0... python3.14-opencloning-linkml-1.0.0> patching script interpreter paths in /nix/store/31zrrvz0pwc2yr5nqsr2bbag3zbls92j-python3.14-opencloning-linkml-1.0.0 python3.14-opencloning-linkml-1.0.0> stripping (with command strip and flags -S -p) in /nix/store/31zrrvz0pwc2yr5nqsr2bbag3zbls92j-python3.14-opencloning-linkml-1.0.0/lib python3.14-opencloning-linkml-1.0.0> shrinking RPATHs of ELF executables and libraries in /nix/store/a09yx3prrnxvq1iilkaq6dl7i07hxnw6-python3.14-opencloning-linkml-1.0.0-dist python3.14-opencloning-linkml-1.0.0> checking for references to /build/ in /nix/store/a09yx3prrnxvq1iilkaq6dl7i07hxnw6-python3.14-opencloning-linkml-1.0.0-dist... python3.14-opencloning-linkml-1.0.0> patching script interpreter paths in /nix/store/a09yx3prrnxvq1iilkaq6dl7i07hxnw6-python3.14-opencloning-linkml-1.0.0-dist python3.14-opencloning-linkml-1.0.0> Executing pythonRemoveTestsDir python3.14-opencloning-linkml-1.0.0> Finished executing pythonRemoveTestsDir python3.14-opencloning-linkml-1.0.0> Running phase: installCheckPhase python3.14-opencloning-linkml-1.0.0> no Makefile or custom installCheckPhase, doing nothing python3.14-opencloning-linkml-1.0.0> Running phase: pythonCatchConflictsPhase python3.14-biopython-1.87> /nix/store/gyficbimx12q5975523ps3kjzz8ys4pq-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/config/pyprojecttoml.py:72: _ExperimentalConfiguration: `[tool.setuptools.ext-modules]` in `pyproject.toml` is still *experimental* and likely to change in future releases. python3.14-biopython-1.87> config = read_configuration(filepath, True, ignore_option_errors, dist) python3.14-sgffp-0.22.1> Successfully installed sgffp-0.22.1-py3-none-any.whl python3.14-sgffp-0.22.1> Finished executing pypaInstallPhase python3.14-sgffp-0.22.1> Running phase: pythonOutputDistPhase python3.14-sgffp-0.22.1> Executing pythonOutputDistPhase python3.14-sgffp-0.22.1> Finished executing pythonOutputDistPhase python3.14-biopython-1.87> running bdist_wheel python3.14-sgffp-0.22.1> Running phase: fixupPhase python3.14-biopython-1.87> running build python3.14-biopython-1.87> running build_py python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio python3.14-biopython-1.87> copying Bio/File.py -> build/lib.linux-x86_64-cpython-314/Bio python3.14-biopython-1.87> copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-314/Bio python3.14-biopython-1.87> copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-314/Bio python3.14-biopython-1.87> copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-314/Bio python3.14-biopython-1.87> copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio python3.14-opencloning-linkml-1.0.0> Running phase: pythonRemoveBinBytecodePhase python3.14-biopython-1.87> copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio python3.14-biopython-1.87> copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-314/Bio python3.14-biopython-1.87> copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-314/Bio python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Affy python3.14-biopython-1.87> copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-314/Bio/Affy python3.14-biopython-1.87> copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Affy python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/AlignIO python3.14-biopython-1.87> copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO python3.14-biopython-1.87> copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO python3.14-biopython-1.87> copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO python3.14-biopython-1.87> copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO python3.14-biopython-1.87> copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO python3.14-biopython-1.87> copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO python3.14-biopython-1.87> copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO python3.14-biopython-1.87> copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO python3.14-biopython-1.87> copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO python3.14-opencloning-linkml-1.0.0> Running phase: pythonImportsCheckPhase python3.14-biopython-1.87> copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO python3.14-biopython-1.87> copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/AlignIO python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Alphabet python3.14-biopython-1.87> copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Alphabet python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Blast python3.14-biopython-1.87> copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast python3.14-biopython-1.87> copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast python3.14-biopython-1.87> copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast python3.14-biopython-1.87> copying Bio/Blast/_parser.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast python3.14-biopython-1.87> copying Bio/Blast/_writers.py -> build/lib.linux-x86_64-cpython-314/Bio/Blast python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/CAPS python3.14-biopython-1.87> copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/CAPS python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Cluster python3.14-biopython-1.87> copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Cluster python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/codonalign python3.14-biopython-1.87> copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign python3.14-biopython-1.87> copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign python3.14-biopython-1.87> copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-314/Bio/codonalign python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Compass python3.14-biopython-1.87> copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Compass python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Data python3.14-biopython-1.87> copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-314/Bio/Data python3.14-biopython-1.87> copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-314/Bio/Data python3.14-biopython-1.87> copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-314/Bio/Data python3.14-biopython-1.87> copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Data python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Emboss python3.14-biopython-1.87> copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss python3.14-biopython-1.87> copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss python3.14-biopython-1.87> copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Emboss python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Entrez python3.14-biopython-1.87> copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-314/Bio/Entrez python3.14-biopython-1.87> copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Entrez python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/ExPASy python3.14-biopython-1.87> copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy python3.14-biopython-1.87> copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy python3.14-opencloning-linkml-1.0.0> Executing pythonImportsCheckPhase python3.14-opencloning-linkml-1.0.0> Check whether the following modules can be imported: opencloning_linkml python3.14-biopython-1.87> copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy python3.14-biopython-1.87> copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy python3.14-biopython-1.87> copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy python3.14-biopython-1.87> copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-314/Bio/ExPASy python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/GenBank python3.14-biopython-1.87> copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank python3.14-biopython-1.87> copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank python3.14-biopython-1.87> copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank python3.14-biopython-1.87> copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-314/Bio/GenBank python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Geo python3.14-biopython-1.87> copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-314/Bio/Geo python3.14-biopython-1.87> copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Geo python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Graphics python3.14-biopython-1.87> copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics python3.14-biopython-1.87> copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics python3.14-biopython-1.87> copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics python3.14-biopython-1.87> copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics python3.14-biopython-1.87> copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics python3.14-biopython-1.87> copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics python3.14-biopython-1.87> copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/HMM python3.14-biopython-1.87> copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/HMM python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/KEGG python3.14-biopython-1.87> copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG python3.14-biopython-1.87> copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound python3.14-biopython-1.87> copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme python3.14-biopython-1.87> copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene python3.14-biopython-1.87> copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map python3.14-biopython-1.87> copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML python3.14-biopython-1.87> copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML python3.14-biopython-1.87> copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML python3.14-biopython-1.87> copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Medline python3.14-biopython-1.87> copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Medline python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar python3.14-biopython-1.87> copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar python3.14-biopython-1.87> copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Nexus python3.14-biopython-1.87> copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus python3.14-biopython-1.87> copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus python3.14-biopython-1.87> copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus python3.14-biopython-1.87> copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus python3.14-biopython-1.87> copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Nexus python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/NMR python3.14-biopython-1.87> copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR python3.14-biopython-1.87> copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR python3.14-biopython-1.87> copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-314/Bio/NMR python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Pathway python3.14-biopython-1.87> copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep python3.14-biopython-1.87> copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep python3.14-biopython-1.87> copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep python3.14-biopython-1.87> copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/PDBMLParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/alphafold_db.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/binary_cif.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf python3.14-biopython-1.87> copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf python3.14-biopython-1.87> copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf python3.14-biopython-1.87> copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/phenotype python3.14-biopython-1.87> copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype python3.14-biopython-1.87> copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype python3.14-biopython-1.87> copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-314/Bio/phenotype python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/PopGen python3.14-biopython-1.87> copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop python3.14-biopython-1.87> copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop python3.14-biopython-1.87> copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop python3.14-biopython-1.87> copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Restriction python3.14-biopython-1.87> copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction python3.14-biopython-1.87> copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction python3.14-biopython-1.87> copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction python3.14-biopython-1.87> copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Restriction python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SCOP python3.14-biopython-1.87> copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP python3.14-biopython-1.87> copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP python3.14-biopython-1.87> copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP python3.14-biopython-1.87> copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP python3.14-biopython-1.87> copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP python3.14-biopython-1.87> copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP python3.14-biopython-1.87> copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SCOP python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO python3.14-biopython-1.87> copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO python3.14-biopython-1.87> copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO python3.14-biopython-1.87> copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO python3.14-biopython-1.87> copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO python3.14-biopython-1.87> copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model python3.14-biopython-1.87> copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model python3.14-biopython-1.87> copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model python3.14-biopython-1.87> copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model python3.14-biopython-1.87> copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model python3.14-biopython-1.87> copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO python3.14-biopython-1.87> copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO python3.14-biopython-1.87> copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO python3.14-biopython-1.87> copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO python3.14-biopython-1.87> copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO python3.14-biopython-1.87> copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO python3.14-biopython-1.87> copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO python3.14-biopython-1.87> copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO python3.14-biopython-1.87> copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO python3.14-biopython-1.87> copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO python3.14-biopython-1.87> copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO python3.14-biopython-1.87> copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO python3.14-biopython-1.87> copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO python3.14-biopython-1.87> copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO python3.14-biopython-1.87> copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO python3.14-biopython-1.87> copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO python3.14-biopython-1.87> copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO python3.14-biopython-1.87> copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO python3.14-biopython-1.87> copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO python3.14-biopython-1.87> copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO python3.14-biopython-1.87> copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO python3.14-biopython-1.87> copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO python3.14-biopython-1.87> copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/GfaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-sgffp-0.22.1> shrinking RPATHs of ELF executables and libraries in /nix/store/56kvwbvs51ls9v2lcx3y37x0llxlyqhs-python3.14-sgffp-0.22.1 python3.14-biopython-1.87> copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SeqUtils python3.14-biopython-1.87> copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils python3.14-biopython-1.87> copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils python3.14-biopython-1.87> copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils python3.14-biopython-1.87> copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils python3.14-biopython-1.87> copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils python3.14-biopython-1.87> copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils python3.14-biopython-1.87> copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-314/Bio/SeqUtils python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Sequencing python3.14-biopython-1.87> copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing python3.14-biopython-1.87> copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing python3.14-biopython-1.87> copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Sequencing python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer python3.14-biopython-1.87> copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/SwissProt python3.14-biopython-1.87> copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-314/Bio/SwissProt python3.14-biopython-1.87> copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/SwissProt python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/TogoWS python3.14-biopython-1.87> copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/TogoWS python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML python3.14-biopython-1.87> copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML python3.14-biopython-1.87> copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML python3.14-biopython-1.87> copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML python3.14-biopython-1.87> copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML python3.14-biopython-1.87> copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML python3.14-biopython-1.87> copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML python3.14-biopython-1.87> copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML python3.14-biopython-1.87> copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML python3.14-biopython-1.87> copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/UniGene python3.14-biopython-1.87> copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/UniGene python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/UniProt python3.14-biopython-1.87> copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-314/Bio/UniProt python3.14-biopython-1.87> copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-314/Bio/UniProt python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/BioSQL python3.14-biopython-1.87> copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-314/BioSQL python3.14-biopython-1.87> copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-314/BioSQL python3.14-biopython-1.87> copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-314/BioSQL python3.14-biopython-1.87> copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-314/BioSQL python3.14-biopython-1.87> copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-314/BioSQL python3.14-biopython-1.87> running egg_info python3.14-biopython-1.87> writing biopython.egg-info/PKG-INFO python3.14-biopython-1.87> writing dependency_links to biopython.egg-info/dependency_links.txt python3.14-biopython-1.87> writing requirements to biopython.egg-info/requires.txt python3.14-biopython-1.87> writing top-level names to biopython.egg-info/top_level.txt python3.14-sgffp-0.22.1> checking for references to /build/ in /nix/store/56kvwbvs51ls9v2lcx3y37x0llxlyqhs-python3.14-sgffp-0.22.1... python3.14-opencloning-linkml-1.0.0> Running phase: pythonMetadataCheckPhase python3.14-biopython-1.87> reading manifest file 'biopython.egg-info/SOURCES.txt' python3.14-opencloning-linkml-1.0.0> Executing pythonMetadataCheckPhase python3.14-biopython-1.87> reading manifest template 'MANIFEST.in' python3.14-sgffp-0.22.1> patching script interpreter paths in /nix/store/56kvwbvs51ls9v2lcx3y37x0llxlyqhs-python3.14-sgffp-0.22.1 python3.14-sgffp-0.22.1> stripping (with command strip and flags -S -p) in /nix/store/56kvwbvs51ls9v2lcx3y37x0llxlyqhs-python3.14-sgffp-0.22.1/lib /nix/store/56kvwbvs51ls9v2lcx3y37x0llxlyqhs-python3.14-sgffp-0.22.1/bin python3.14-biopython-1.87> warning: no previously-included files found matching 'Doc/_build' python3.14-biopython-1.87> warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' python3.14-biopython-1.87> warning: no previously-included files matching '*.pyc' found anywhere in distribution python3.14-biopython-1.87> warning: no previously-included files matching '*.pyo' found anywhere in distribution python3.14-biopython-1.87> warning: no previously-included files matching '*.py{}' found anywhere in distribution python3.14-biopython-1.87> warning: no previously-included files matching '*.py-e' found anywhere in distribution python3.14-biopython-1.87> warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' python3.14-biopython-1.87> adding license file 'LICENSE.rst' python3.14-biopython-1.87> writing manifest file 'biopython.egg-info/SOURCES.txt' python3.14-biopython-1.87> copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-314/Bio python3.14-biopython-1.87> copying Bio/py.typed -> build/lib.linux-x86_64-cpython-314/Bio python3.14-biopython-1.87> copying Bio/Align/_aligncore.c -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/_alignmentcounts.c -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/_pairwisealigner.h -> build/lib.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-314/Bio/Cluster python3.14-biopython-1.87> copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-314/Bio/Cluster python3.14-biopython-1.87> copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-314/Bio/Cluster python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_230101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_240101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/pubmed_250101.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs python3.14-biopython-1.87> creating build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs python3.14-biopython-1.87> copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs python3.14-biopython-1.87> copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs python3.14-biopython-1.87> copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs python3.14-biopython-1.87> copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-314/Bio/Nexus python3.14-biopython-1.87> copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-314/BioSQL python3.14-biopython-1.87> running build_ext python3.14-biopython-1.87> building 'Bio.Align._aligncore' extension python3.14-biopython-1.87> creating build/temp.linux-x86_64-cpython-314/Bio/Align python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/Align/_aligncore.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_aligncore.o python3.14-sgffp-0.22.1> shrinking RPATHs of ELF executables and libraries in /nix/store/b5n01r3xg1a8vnfsb842wmw9b8h6nwip-python3.14-sgffp-0.22.1-dist python3.14-sgffp-0.22.1> checking for references to /build/ in /nix/store/b5n01r3xg1a8vnfsb842wmw9b8h6nwip-python3.14-sgffp-0.22.1-dist... python3.14-sgffp-0.22.1> patching script interpreter paths in /nix/store/b5n01r3xg1a8vnfsb842wmw9b8h6nwip-python3.14-sgffp-0.22.1-dist python3.14-sgffp-0.22.1> Rewriting #!/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/bin/python3.14 to #!/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7 python3.14-sgffp-0.22.1> wrapping `/nix/store/56kvwbvs51ls9v2lcx3y37x0llxlyqhs-python3.14-sgffp-0.22.1/bin/sff'... python3.14-sgffp-0.22.1> Executing pythonRemoveTestsDir python3.14-sgffp-0.22.1> Finished executing pythonRemoveTestsDir python3.14-sgffp-0.22.1> Running phase: installCheckPhase python3.14-sgffp-0.22.1> no Makefile or custom installCheckPhase, doing nothing python3.14-sgffp-0.22.1> Running phase: pythonCatchConflictsPhase python3.14-sgffp-0.22.1> Running phase: pythonRemoveBinBytecodePhase python3.14-sgffp-0.22.1> Running phase: pythonImportsCheckPhase python3.14-sgffp-0.22.1> Executing pythonImportsCheckPhase python3.14-sgffp-0.22.1> Check whether the following modules can be imported: sgffp python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/Align/_aligncore.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.cpython-314-x86_64-linux-gnu.so python3.14-sgffp-0.22.1> Running phase: pythonMetadataCheckPhase python3.14-sgffp-0.22.1> Executing pythonMetadataCheckPhase python3.14-biopython-1.87> building 'Bio.Align._alignmentcounts' extension python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.o python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> building 'Bio.Align._codonaligner' extension python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_codonaligner.o python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/Align/_codonaligner.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> building 'Bio.Align._pairwisealigner' extension python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.o python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> building 'Bio.Align.substitution_matrices._arraycore' extension python3.14-biopython-1.87> creating build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/Align/substitution_matrices/_arraycore.c -o build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> building 'Bio.cpairwise2' extension python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-314/Bio/cpairwise2module.o python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/cpairwise2module.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/cpairwise2.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> building 'Bio.Nexus.cnexus' extension python3.14-biopython-1.87> creating build/temp.linux-x86_64-cpython-314/Bio/Nexus python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-314/Bio/Nexus/cnexus.o python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/Nexus/cnexus.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> building 'Bio.motifs._pwm' extension python3.14-biopython-1.87> creating build/temp.linux-x86_64-cpython-314/Bio/motifs python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-314/Bio/motifs/_pwm.o python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/motifs/_pwm.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> building 'Bio.Cluster._cluster' extension python3.14-biopython-1.87> creating build/temp.linux-x86_64-cpython-314/Bio/Cluster python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-314/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/Cluster/_cluster.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> building 'Bio.PDB.ccealign' extension python3.14-biopython-1.87> creating build/temp.linux-x86_64-cpython-314/Bio/PDB python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.o python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealign.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> building 'Bio.PDB.kdtrees' extension python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/kdtrees.o python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/PDB/kdtrees.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> building 'Bio.PDB._bcif_helper' extension python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.o python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> building 'Bio.SeqIO._twoBitIO' extension python3.14-biopython-1.87> creating build/temp.linux-x86_64-cpython-314/Bio/SeqIO python3.14-biopython-1.87> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -I/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/include/python3.14 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.o python3.14-biopython-1.87> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.3-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.4/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/fh8svr4ds87z84iarfnxrlfpjlbmc816-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.o -L/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> installing to build/bdist.linux-x86_64/wheel python3.14-biopython-1.87> running install python3.14-biopython-1.87> running install_lib python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/File.py -> build/bdist.linux-x86_64/wheel/./Bio python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/./Bio python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/./Bio python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/./Bio python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/./Bio python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/./Bio python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Affy python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.c -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.h -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/_aligncore.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/_codonaligner.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Align python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/AlignIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/MauveIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/AlignIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Alphabet python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Alphabet python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Blast python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Blast/_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Blast/_writers.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/CAPS python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/CAPS python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Cluster python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Cluster python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/./Bio/Cluster python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Cluster/_cluster.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Cluster python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/codonalign python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Compass python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Compass python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/./Bio/Data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Data python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Emboss python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Entrez python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_230101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_240101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/pubmed_250101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/ExPASy python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/GenBank python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Geo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Graphics python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/HMM python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/KEGG python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Compound python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Enzyme python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Gene python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/Map/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Map python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Medline python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Medline python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/motifs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/motifs/_pwm.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/motifs python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Nexus python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/./Bio/Nexus python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Nexus/cnexus.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/Nexus python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/NMR python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Pathway python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBMLParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/alphafold_db.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/binary_cif.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/ccealign.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/kdtrees.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/phenotype python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/PopGen python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Restriction python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SCOP python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SearchIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InfernalIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InfernalIO python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InterproscanIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InterproscanIO python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/GfaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Sequencing python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SVDSuperimposer python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/SwissProt python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/TogoWS python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/TogoWS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/TogoWS python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/UniGene python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniGene python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/Bio/UniProt python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/./Bio python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/py.typed -> build/bdist.linux-x86_64/wheel/./Bio python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/Bio/cpairwise2.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./Bio python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/BioSQL python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/./BioSQL python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/./BioSQL python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/./BioSQL python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/./BioSQL python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/./BioSQL python3.14-biopython-1.87> copying build/lib.linux-x86_64-cpython-314/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/./BioSQL python3.14-biopython-1.87> running install_egg_info python3.14-biopython-1.87> Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/./biopython-1.87-py3.14.egg-info python3.14-biopython-1.87> running install_scripts python3.14-biopython-1.87> creating build/bdist.linux-x86_64/wheel/biopython-1.87.dist-info/WHEEL python3.14-biopython-1.87> creating '/build/biopython-1.87/dist/.tmp-e3fb9hyw/biopython-1.87-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it python3.14-biopython-1.87> adding 'Bio/File.py' python3.14-biopython-1.87> adding 'Bio/Seq.py' python3.14-biopython-1.87> adding 'Bio/SeqFeature.py' python3.14-biopython-1.87> adding 'Bio/SeqRecord.py' python3.14-biopython-1.87> adding 'Bio/__init__.py' python3.14-biopython-1.87> adding 'Bio/_utils.py' python3.14-biopython-1.87> adding 'Bio/bgzf.py' python3.14-biopython-1.87> adding 'Bio/cpairwise2.cpython-314-x86_64-linux-gnu.so' python3.14-biopython-1.87> adding 'Bio/cpairwise2module.c' python3.14-biopython-1.87> adding 'Bio/pairwise2.py' python3.14-biopython-1.87> adding 'Bio/py.typed' python3.14-biopython-1.87> adding 'Bio/Affy/CelFile.py' python3.14-biopython-1.87> adding 'Bio/Affy/__init__.py' python3.14-biopython-1.87> adding 'Bio/Align/AlignInfo.py' python3.14-biopython-1.87> adding 'Bio/Align/__init__.py' python3.14-biopython-1.87> adding 'Bio/Align/_aligncore.c' python3.14-biopython-1.87> adding 'Bio/Align/_aligncore.cpython-314-x86_64-linux-gnu.so' python3.14-biopython-1.87> adding 'Bio/Align/_alignmentcounts.c' python3.14-biopython-1.87> adding 'Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-gnu.so' python3.14-biopython-1.87> adding 'Bio/Align/_codonaligner.c' python3.14-biopython-1.87> adding 'Bio/Align/_codonaligner.cpython-314-x86_64-linux-gnu.so' python3.14-biopython-1.87> adding 'Bio/Align/_pairwisealigner.c' python3.14-biopython-1.87> adding 'Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-gnu.so' python3.14-biopython-1.87> adding 'Bio/Align/_pairwisealigner.h' python3.14-biopython-1.87> adding 'Bio/Align/a2m.py' python3.14-biopython-1.87> adding 'Bio/Align/analysis.py' python3.14-biopython-1.87> adding 'Bio/Align/bed.py' python3.14-biopython-1.87> adding 'Bio/Align/bigbed.py' python3.14-biopython-1.87> adding 'Bio/Align/bigmaf.py' python3.14-biopython-1.87> adding 'Bio/Align/bigpsl.py' python3.14-biopython-1.87> adding 'Bio/Align/chain.py' python3.14-biopython-1.87> adding 'Bio/Align/clustal.py' python3.14-biopython-1.87> adding 'Bio/Align/emboss.py' python3.14-biopython-1.87> adding 'Bio/Align/exonerate.py' python3.14-biopython-1.87> adding 'Bio/Align/fasta.py' python3.14-biopython-1.87> adding 'Bio/Align/hhr.py' python3.14-biopython-1.87> adding 'Bio/Align/interfaces.py' python3.14-biopython-1.87> adding 'Bio/Align/maf.py' python3.14-biopython-1.87> adding 'Bio/Align/mauve.py' python3.14-biopython-1.87> adding 'Bio/Align/msf.py' python3.14-biopython-1.87> adding 'Bio/Align/nexus.py' python3.14-biopython-1.87> adding 'Bio/Align/phylip.py' python3.14-biopython-1.87> adding 'Bio/Align/psl.py' python3.14-biopython-1.87> adding 'Bio/Align/sam.py' python3.14-biopython-1.87> adding 'Bio/Align/stockholm.py' python3.14-biopython-1.87> adding 'Bio/Align/tabular.py' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/__init__.py' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/_arraycore.c' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-gnu.so' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/_arraycore.h' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/BENNER22' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/BENNER6' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/BENNER74' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/BLASTN' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/BLASTP' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/BLOSUM45' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/BLOSUM50' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/BLOSUM62' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/BLOSUM80' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/BLOSUM90' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/DAYHOFF' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/FENG' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/GENETIC' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/GONNET1992' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/HOXD70' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/JOHNSON' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/JONES' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/LEVIN' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/MCLACHLAN' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/MDM78' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/MEGABLAST' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/NUC.4.4' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/PAM250' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/PAM30' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/PAM70' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/RAO' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/RISLER' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/SCHNEIDER' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/STR' python3.14-biopython-1.87> adding 'Bio/Align/substitution_matrices/data/TRANS' python3.14-biopython-1.87> adding 'Bio/AlignIO/ClustalIO.py' python3.14-biopython-1.87> adding 'Bio/AlignIO/EmbossIO.py' python3.14-biopython-1.87> adding 'Bio/AlignIO/FastaIO.py' python3.14-biopython-1.87> adding 'Bio/AlignIO/Interfaces.py' python3.14-biopython-1.87> adding 'Bio/AlignIO/MafIO.py' python3.14-biopython-1.87> adding 'Bio/AlignIO/MauveIO.py' python3.14-biopython-1.87> adding 'Bio/AlignIO/MsfIO.py' python3.14-biopython-1.87> adding 'Bio/AlignIO/NexusIO.py' python3.14-biopython-1.87> adding 'Bio/AlignIO/PhylipIO.py' python3.14-biopython-1.87> adding 'Bio/AlignIO/StockholmIO.py' python3.14-biopython-1.87> adding 'Bio/AlignIO/__init__.py' python3.14-biopython-1.87> adding 'Bio/Alphabet/__init__.py' python3.14-biopython-1.87> adding 'Bio/Blast/NCBIWWW.py' python3.14-biopython-1.87> adding 'Bio/Blast/NCBIXML.py' python3.14-biopython-1.87> adding 'Bio/Blast/__init__.py' python3.14-biopython-1.87> adding 'Bio/Blast/_parser.py' python3.14-biopython-1.87> adding 'Bio/Blast/_writers.py' python3.14-biopython-1.87> adding 'Bio/CAPS/__init__.py' python3.14-biopython-1.87> adding 'Bio/Cluster/__init__.py' python3.14-biopython-1.87> adding 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'Bio/Phylo/PAML/codeml.py' python3.14-biopython-1.87> adding 'Bio/Phylo/PAML/yn00.py' python3.14-biopython-1.87> adding 'Bio/PopGen/__init__.py' python3.14-biopython-1.87> adding 'Bio/PopGen/GenePop/FileParser.py' python3.14-biopython-1.87> adding 'Bio/PopGen/GenePop/LargeFileParser.py' python3.14-biopython-1.87> adding 'Bio/PopGen/GenePop/__init__.py' python3.14-biopython-1.87> adding 'Bio/Restriction/PrintFormat.py' python3.14-biopython-1.87> adding 'Bio/Restriction/Restriction.py' python3.14-biopython-1.87> adding 'Bio/Restriction/Restriction_Dictionary.py' python3.14-biopython-1.87> adding 'Bio/Restriction/__init__.py' python3.14-biopython-1.87> adding 'Bio/SCOP/Cla.py' python3.14-biopython-1.87> adding 'Bio/SCOP/Des.py' python3.14-biopython-1.87> adding 'Bio/SCOP/Dom.py' python3.14-biopython-1.87> adding 'Bio/SCOP/Hie.py' python3.14-biopython-1.87> adding 'Bio/SCOP/Raf.py' python3.14-biopython-1.87> adding 'Bio/SCOP/Residues.py' python3.14-biopython-1.87> adding 'Bio/SCOP/__init__.py' python3.14-biopython-1.87> adding 'Bio/SVDSuperimposer/__init__.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/BlatIO.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/FastaIO.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/__init__.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/_index.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/_utils.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/BlastIO/__init__.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/BlastIO/blast_tab.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/BlastIO/blast_xml.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/ExonerateIO/__init__.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/ExonerateIO/_base.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/ExonerateIO/exonerate_cigar.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/ExonerateIO/exonerate_text.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/ExonerateIO/exonerate_vulgar.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/HHsuiteIO/__init__.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/HHsuiteIO/hhsuite2_text.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/HmmerIO/__init__.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/HmmerIO/_base.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/HmmerIO/hmmer2_text.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/HmmerIO/hmmer3_domtab.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/HmmerIO/hmmer3_tab.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/HmmerIO/hmmer3_text.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/InfernalIO/__init__.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/InfernalIO/_base.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/InfernalIO/infernal_tab.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/InfernalIO/infernal_text.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/InterproscanIO/__init__.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/InterproscanIO/interproscan_xml.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/_model/__init__.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/_model/_base.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/_model/hit.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/_model/hsp.py' python3.14-biopython-1.87> adding 'Bio/SearchIO/_model/query.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/AbiIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/AceIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/FastaIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/GckIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/GfaIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/IgIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/InsdcIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/Interfaces.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/NibIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/PdbIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/PhdIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/PirIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/QualityIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/SeqXmlIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/SffIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/SnapGeneIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/SwissIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/TabIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/TwoBitIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/UniprotIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/XdnaIO.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/__init__.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/_index.py' python3.14-biopython-1.87> adding 'Bio/SeqIO/_twoBitIO.c' python3.14-biopython-1.87> adding 'Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-gnu.so' python3.14-biopython-1.87> adding 'Bio/SeqUtils/CheckSum.py' python3.14-biopython-1.87> adding 'Bio/SeqUtils/IsoelectricPoint.py' python3.14-biopython-1.87> adding 'Bio/SeqUtils/MeltingTemp.py' python3.14-biopython-1.87> adding 'Bio/SeqUtils/ProtParam.py' python3.14-biopython-1.87> adding 'Bio/SeqUtils/ProtParamData.py' python3.14-biopython-1.87> adding 'Bio/SeqUtils/__init__.py' python3.14-biopython-1.87> adding 'Bio/SeqUtils/lcc.py' python3.14-biopython-1.87> adding 'Bio/Sequencing/Ace.py' python3.14-biopython-1.87> adding 'Bio/Sequencing/Phd.py' python3.14-biopython-1.87> adding 'Bio/Sequencing/__init__.py' python3.14-biopython-1.87> adding 'Bio/SwissProt/KeyWList.py' python3.14-biopython-1.87> adding 'Bio/SwissProt/__init__.py' python3.14-biopython-1.87> adding 'Bio/TogoWS/__init__.py' python3.14-biopython-1.87> adding 'Bio/UniGene/__init__.py' python3.14-biopython-1.87> adding 'Bio/UniProt/GOA.py' python3.14-biopython-1.87> adding 'Bio/UniProt/__init__.py' python3.14-biopython-1.87> adding 'Bio/codonalign/__init__.py' python3.14-biopython-1.87> adding 'Bio/codonalign/codonalignment.py' python3.14-biopython-1.87> adding 'Bio/codonalign/codonseq.py' python3.14-biopython-1.87> adding 'Bio/motifs/__init__.py' python3.14-biopython-1.87> adding 'Bio/motifs/_pwm.c' python3.14-biopython-1.87> adding 'Bio/motifs/_pwm.cpython-314-x86_64-linux-gnu.so' python3.14-biopython-1.87> adding 'Bio/motifs/alignace.py' python3.14-biopython-1.87> adding 'Bio/motifs/clusterbuster.py' python3.14-biopython-1.87> adding 'Bio/motifs/mast.py' python3.14-biopython-1.87> adding 'Bio/motifs/matrix.py' python3.14-biopython-1.87> adding 'Bio/motifs/meme.py' python3.14-biopython-1.87> adding 'Bio/motifs/minimal.py' python3.14-biopython-1.87> adding 'Bio/motifs/pfm.py' python3.14-biopython-1.87> adding 'Bio/motifs/thresholds.py' python3.14-biopython-1.87> adding 'Bio/motifs/transfac.py' python3.14-biopython-1.87> adding 'Bio/motifs/xms.py' python3.14-biopython-1.87> adding 'Bio/motifs/jaspar/__init__.py' python3.14-biopython-1.87> adding 'Bio/motifs/jaspar/db.py' python3.14-biopython-1.87> adding 'Bio/phenotype/__init__.py' python3.14-biopython-1.87> adding 'Bio/phenotype/phen_micro.py' python3.14-biopython-1.87> adding 'Bio/phenotype/pm_fitting.py' python3.14-biopython-1.87> adding 'BioSQL/BioSeq.py' python3.14-biopython-1.87> adding 'BioSQL/BioSeqDatabase.py' python3.14-biopython-1.87> adding 'BioSQL/DBUtils.py' python3.14-biopython-1.87> adding 'BioSQL/Loader.py' python3.14-biopython-1.87> adding 'BioSQL/__init__.py' python3.14-biopython-1.87> adding 'BioSQL/py.typed' python3.14-biopython-1.87> adding 'biopython-1.87.dist-info/licenses/LICENSE.rst' python3.14-biopython-1.87> adding 'biopython-1.87.dist-info/METADATA' python3.14-biopython-1.87> adding 'biopython-1.87.dist-info/WHEEL' python3.14-biopython-1.87> adding 'biopython-1.87.dist-info/top_level.txt' python3.14-biopython-1.87> adding 'biopython-1.87.dist-info/RECORD' python3.14-biopython-1.87> removing build/bdist.linux-x86_64/wheel python3.14-biopython-1.87> :18: DeprecationWarning: Invoking setup.py is deprecated and will be removed in a future release of Biopython. python3.14-biopython-1.87> Please use `pip install` or `python -m build` instead of `python setup.py` commands. python3.14-biopython-1.87> For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/ python3.14-biopython-1.87> python3.14-biopython-1.87> DEPRECATION WARNING: Invoking setup.py is deprecated and will be removed in a future release of Biopython. python3.14-biopython-1.87> Please use `pip install` or `python -m build` instead of `python setup.py` commands. python3.14-biopython-1.87> For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/ python3.14-biopython-1.87> python3.14-biopython-1.87> Successfully built biopython-1.87-cp314-cp314-linux_x86_64.whl python3.14-biopython-1.87> Finished creating a wheel... python3.14-biopython-1.87> Finished executing pypaBuildPhase python3.14-biopython-1.87> buildPhase completed in 33 seconds python3.14-biopython-1.87> Running phase: pythonRuntimeDepsCheckHook python3.14-biopython-1.87> Executing pythonRuntimeDepsCheck python3.14-biopython-1.87> Checking runtime dependencies for biopython-1.87-cp314-cp314-linux_x86_64.whl python3.14-biopython-1.87> Finished executing pythonRuntimeDepsCheck python3.14-biopython-1.87> Running phase: installPhase python3.14-biopython-1.87> Executing pypaInstallPhase python3.14-biopython-1.87> Successfully installed biopython-1.87-cp314-cp314-linux_x86_64.whl python3.14-biopython-1.87> Finished executing pypaInstallPhase python3.14-biopython-1.87> Running phase: pythonOutputDistPhase python3.14-biopython-1.87> Executing pythonOutputDistPhase python3.14-biopython-1.87> Finished executing pythonOutputDistPhase python3.14-biopython-1.87> Running phase: fixupPhase python3.14-biopython-1.87> shrinking RPATHs of ELF executables and libraries in /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87 python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/cpairwise2.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/Align/_aligncore.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/Align/_alignmentcounts.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/Align/_codonaligner.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/Align/_pairwisealigner.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/Align/substitution_matrices/_arraycore.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/Cluster/_cluster.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/Nexus/cnexus.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/PDB/_bcif_helper.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/PDB/ccealign.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/PDB/kdtrees.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/SeqIO/_twoBitIO.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> shrinking /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/motifs/_pwm.cpython-314-x86_64-linux-gnu.so python3.14-biopython-1.87> checking for references to /build/ in /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87... python3.14-biopython-1.87> patching script interpreter paths in /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87 python3.14-biopython-1.87> stripping (with command strip and flags -S -p) in /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib python3.14-biopython-1.87> shrinking RPATHs of ELF executables and libraries in /nix/store/7jl5085ly9m4x598ck7xfdrhizkd5jzp-python3.14-biopython-1.87-dist python3.14-biopython-1.87> checking for references to /build/ in /nix/store/7jl5085ly9m4x598ck7xfdrhizkd5jzp-python3.14-biopython-1.87-dist... python3.14-biopython-1.87> patching script interpreter paths in /nix/store/7jl5085ly9m4x598ck7xfdrhizkd5jzp-python3.14-biopython-1.87-dist python3.14-biopython-1.87> Executing pythonRemoveTestsDir python3.14-biopython-1.87> Finished executing pythonRemoveTestsDir python3.14-biopython-1.87> Running phase: installCheckPhase python3.14-biopython-1.87> setting known thread variables to default: 1 python3.14-biopython-1.87> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 python3.14-biopython-1.87> Skipping any tests requiring internet access python3.14-biopython-1.87> Python version: 3.14.7 (main, Aug 5 2026, 10:29:49) [GCC 15.3.0] python3.14-biopython-1.87> Operating system: posix linux python3.14-biopython-1.87> test_Ace ... ok python3.14-biopython-1.87> test_Affy ... ok python3.14-biopython-1.87> test_AlignIO ... ok python3.14-biopython-1.87> test_AlignIO_ClustalIO ... ok python3.14-biopython-1.87> test_AlignIO_EmbossIO ... ok python3.14-biopython-1.87> test_AlignIO_FastaIO ... ok python3.14-biopython-1.87> test_AlignIO_MauveIO ... ok python3.14-biopython-1.87> test_AlignIO_PhylipIO ... ok python3.14-biopython-1.87> test_AlignIO_convert ... ok python3.14-biopython-1.87> test_Align_Alignment ... ok python3.14-biopython-1.87> test_Align_a2m ... ok python3.14-biopython-1.87> test_Align_bed ... ok python3.14-biopython-1.87> test_Align_bigbed ... ok python3.14-biopython-1.87> test_Align_bigmaf ... ok python3.14-biopython-1.87> test_Align_bigpsl ... ok python3.14-biopython-1.87> test_Align_chain ... ok python3.14-biopython-1.87> test_Align_clustal ... ok python3.14-biopython-1.87> test_Align_codonalign ... ok python3.14-biopython-1.87> test_Align_emboss ... ok python3.14-biopython-1.87> test_Align_exonerate ... ok python3.14-biopython-1.87> test_Align_fasta ... ok python3.14-biopython-1.87> test_Align_format_matrix ... ok python3.14-biopython-1.87> test_Align_hhr ... ok python3.14-biopython-1.87> test_Align_maf ... ok python3.14-biopython-1.87> test_Align_mauve ... ok python3.14-biopython-1.87> test_Align_msf ... ok python3.14-biopython-1.87> test_Align_nexus ... ok python3.14-biopython-1.87> test_Align_phylip ... ok python3.14-biopython-1.87> test_Align_psl ... ok python3.14-biopython-1.87> test_Align_sam ... ok python3.14-biopython-1.87> test_Align_stockholm ... ok python3.14-biopython-1.87> test_Align_tabular ... ok python3.14-biopython-1.87> test_BioSQL_MySQLdb ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) python3.14-biopython-1.87> test_BioSQL_MySQLdb_online ... skipping. internet not available python3.14-biopython-1.87> test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) python3.14-biopython-1.87> test_BioSQL_mysql_connector_online ... skipping. internet not available python3.14-biopython-1.87> test_BioSQL_psycopg2 ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) python3.14-biopython-1.87> test_BioSQL_psycopg2_online ... skipping. internet not available python3.14-biopython-1.87> test_BioSQL_sqlite3 ... ok python3.14-biopython-1.87> test_BioSQL_sqlite3_online ... skipping. internet not available python3.14-biopython-1.87> test_Blast_Record ... ok python3.14-biopython-1.87> test_Blast_parser ... ok python3.14-biopython-1.87> test_CAPS ... ok python3.14-biopython-1.87> test_Chi2 ... ok python3.14-biopython-1.87> test_Cluster ... ok python3.14-biopython-1.87> test_CodonTable ... ok python3.14-biopython-1.87> test_ColorSpiral ... skipping. Error: Install reportlab if you want to use Bio.Graphics. python3.14-biopython-1.87> python3.14-biopython-1.87> test_Compass ... ok python3.14-biopython-1.87> test_Consensus ... ok python3.14-biopython-1.87> test_EMBL_unittest ... ok python3.14-biopython-1.87> test_EmbossPrimer ... ok python3.14-biopython-1.87> test_Entrez ... ok python3.14-biopython-1.87> test_Entrez_online ... skipping. internet not available python3.14-biopython-1.87> test_Entrez_parser ... ok python3.14-biopython-1.87> test_Enzyme ... ok python3.14-biopython-1.87> test_ExPASy ... skipping. internet not available python3.14-biopython-1.87> test_ExPASy_offline ... ok python3.14-biopython-1.87> test_File ... ok python3.14-biopython-1.87> test_GenBank ... ok python3.14-biopython-1.87> test_GenomeDiagram ... skipping. Error: Install reportlab if you want to use Bio.Graphics. python3.14-biopython-1.87> python3.14-biopython-1.87> test_GraphicsBitmaps ... skipping. Error: Install ReportLab if you want to use Bio.Graphics. python3.14-biopython-1.87> python3.14-biopython-1.87> test_GraphicsChromosome ... skipping. Error: Install reportlab if you want to use Bio.Graphics. python3.14-biopython-1.87> python3.14-biopython-1.87> test_GraphicsDistribution ... skipping. Install reportlab if you want to use Bio.Graphics. python3.14-biopython-1.87> test_GraphicsGeneral ... skipping. Install reportlab if you want to use Bio.Graphics. python3.14-biopython-1.87> test_KEGG ... ok python3.14-biopython-1.87> test_KEGG_online ... skipping. internet not available python3.14-biopython-1.87> test_KGML_graphics ... skipping. Error: Please install ReportLab if you want to use Bio.Graphics. You can find ReportLab at http://www.reportlab.com/software/opensource/ python3.14-biopython-1.87> python3.14-biopython-1.87> test_KGML_graphics_online ... skipping. Install reportlab if you want to use Bio.Graphics. python3.14-biopython-1.87> test_KGML_nographics ... ok python3.14-biopython-1.87> test_KeyWList ... ok python3.14-biopython-1.87> test_MafIO_index ... ok python3.14-biopython-1.87> test_Medline ... ok python3.14-biopython-1.87> test_NCBIXML ... Exception ignored while closing generator : python3.14-biopython-1.87> Traceback (most recent call last): python3.14-biopython-1.87> File "/nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/Blast/NCBIXML.py", line 1326, in parse python3.14-biopython-1.87> expat_parser.Parse(NULL, True) python3.14-biopython-1.87> xml.parsers.expat.ExpatError: unclosed token: line 320, column 0 python3.14-biopython-1.87> ok python3.14-biopython-1.87> test_NCBI_qblast ... ok python3.14-biopython-1.87> test_NMR ... ok python3.14-biopython-1.87> test_Nexus ... ok python3.14-biopython-1.87> test_PAML_baseml ... ok python3.14-biopython-1.87> test_PAML_codeml ... ok python3.14-biopython-1.87> test_PAML_tools ... skipping. Install PAML if you want to use the Bio.Phylo.PAML wrapper. python3.14-biopython-1.87> test_PAML_yn00 ... ok python3.14-biopython-1.87> test_PDB_CEAligner ... ok python3.14-biopython-1.87> test_PDB_DSSP ... ok python3.14-biopython-1.87> test_PDB_Dice ... ok python3.14-biopython-1.87> test_PDB_Disordered ... ok python3.14-biopython-1.87> test_PDB_Exposure ... ok python3.14-biopython-1.87> test_PDB_FragmentMapper ... ok python3.14-biopython-1.87> test_PDB_KDTree ... ok python3.14-biopython-1.87> test_PDB_MMCIF2Dict ... ok python3.14-biopython-1.87> test_PDB_MMCIFIO ... ok python3.14-biopython-1.87> test_PDB_MMCIFParser ... ok python3.14-biopython-1.87> test_PDB_NACCESS ... ok python3.14-biopython-1.87> test_PDB_PDBIO ... ok python3.14-biopython-1.87> test_PDB_PDBList ... skipping. internet not available python3.14-biopython-1.87> test_PDB_PDBMLParser ... ok python3.14-biopython-1.87> test_PDB_PDBParser ... ok python3.14-biopython-1.87> test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path python3.14-biopython-1.87> test_PDB_Polypeptide ... ok python3.14-biopython-1.87> test_PDB_QCPSuperimposer ... ok python3.14-biopython-1.87> test_PDB_ResidueDepth ... ok python3.14-biopython-1.87> test_PDB_SASA ... ok python3.14-biopython-1.87> test_PDB_SMCRA ... ok python3.14-biopython-1.87> test_PDB_Selection ... ok python3.14-biopython-1.87> test_PDB_StructureAlignment ... ok python3.14-biopython-1.87> test_PDB_Superimposer ... ok python3.14-biopython-1.87> test_PDB_alphafold_db ... skipping. internet not available python3.14-biopython-1.87> test_PDB_binary_cif ... skipping. Error: Install msgpack to use Bio.PDB.binaryCIF (e.g. pip install msgpack) python3.14-biopython-1.87> python3.14-biopython-1.87> test_PDB_internal_coords ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) python3.14-biopython-1.87> python3.14-biopython-1.87> test_PDB_parse_pdb_header ... ok python3.14-biopython-1.87> test_PDB_vectors ... /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/PDB/vectors.py:687: UserWarning: 'where' used without 'out', expect uninitialized memory in output. If this is intentional, use out=None. python3.14-biopython-1.87> polar_angle = np.arccos(np.divide(p[:, 2], r, where=r != 0)) python3.14-biopython-1.87> ok python3.14-biopython-1.87> test_PQR ... ok python3.14-biopython-1.87> test_Pathway ... ok python3.14-biopython-1.87> test_Phd ... ok python3.14-biopython-1.87> test_Phylo ... ok python3.14-biopython-1.87> test_PhyloXML ... ok python3.14-biopython-1.87> test_Phylo_CDAO ... skipping. Install RDFlib if you want to use the CDAO tree format. python3.14-biopython-1.87> test_Phylo_NeXML ... ok python3.14-biopython-1.87> test_Phylo_igraph ... skipping. Install igraph if you wish to use it with Bio.Phylo python3.14-biopython-1.87> test_Phylo_matplotlib ... skipping. Install matplotlib if you want to use Bio.Phylo._utils. python3.14-biopython-1.87> test_Phylo_networkx ... skipping. Install networkx if you wish to use it with Bio.Phylo python3.14-biopython-1.87> test_PopGen_GenePop_nodepend ... ok python3.14-biopython-1.87> test_ProtParam ... ok python3.14-biopython-1.87> test_RCSBFormats ... ok python3.14-biopython-1.87> test_Restriction ... ok python3.14-biopython-1.87> test_SCOP_Astral ... ok python3.14-biopython-1.87> test_SCOP_Cla ... ok python3.14-biopython-1.87> test_SCOP_Des ... ok python3.14-biopython-1.87> test_SCOP_Dom ... ok python3.14-biopython-1.87> test_SCOP_Hie ... ok python3.14-biopython-1.87> test_SCOP_Raf ... ok python3.14-biopython-1.87> test_SCOP_Residues ... ok python3.14-biopython-1.87> test_SCOP_Scop ... ok python3.14-biopython-1.87> test_SVDSuperimposer ... ok python3.14-biopython-1.87> test_SearchIO_blast_tab ... ok python3.14-biopython-1.87> test_SearchIO_blast_tab_index ... ok python3.14-biopython-1.87> test_SearchIO_blast_xml ... ok python3.14-biopython-1.87> test_SearchIO_blast_xml_index ... ok python3.14-biopython-1.87> test_SearchIO_blat_psl ... ok python3.14-biopython-1.87> test_SearchIO_blat_psl_index ... ok python3.14-biopython-1.87> test_SearchIO_exonerate ... ok python3.14-biopython-1.87> test_SearchIO_exonerate_text_index ... ok python3.14-biopython-1.87> test_SearchIO_exonerate_vulgar_index ... ok python3.14-biopython-1.87> test_SearchIO_fasta_m10 ... ok python3.14-biopython-1.87> test_SearchIO_fasta_m10_index ... ok python3.14-biopython-1.87> test_SearchIO_hhsuite2_text ... ok python3.14-biopython-1.87> test_SearchIO_hmmer2_text ... ok python3.14-biopython-1.87> test_SearchIO_hmmer2_text_index ... ok python3.14-biopython-1.87> test_SearchIO_hmmer3_domtab ... ok python3.14-biopython-1.87> test_SearchIO_hmmer3_domtab_index ... ok python3.14-biopython-1.87> test_SearchIO_hmmer3_tab ... ok python3.14-biopython-1.87> test_SearchIO_hmmer3_tab_index ... ok python3.14-biopython-1.87> test_SearchIO_hmmer3_text ... ok python3.14-biopython-1.87> test_SearchIO_hmmer3_text_index ... ok python3.14-biopython-1.87> test_SearchIO_infernal_tab ... ok python3.14-biopython-1.87> test_SearchIO_infernal_tab_index ... ok python3.14-biopython-1.87> test_SearchIO_infernal_text ... ok python3.14-biopython-1.87> test_SearchIO_infernal_text_index ... ok python3.14-biopython-1.87> test_SearchIO_interproscan_xml ... ok python3.14-biopython-1.87> test_SearchIO_model ... ok python3.14-biopython-1.87> test_SearchIO_write ... ok python3.14-biopython-1.87> test_SeqFeature ... ok python3.14-biopython-1.87> test_SeqIO ... ok python3.14-biopython-1.87> test_SeqIO_AbiIO ... ok python3.14-biopython-1.87> test_SeqIO_FastaIO ... ok python3.14-biopython-1.87> test_SeqIO_Gck ... ok python3.14-biopython-1.87> test_SeqIO_Gfa ... ok python3.14-biopython-1.87> test_SeqIO_Insdc ... ok python3.14-biopython-1.87> test_SeqIO_NibIO ... ok python3.14-biopython-1.87> test_SeqIO_PdbIO ... ok python3.14-biopython-1.87> test_SeqIO_QualityIO ... ok python3.14-biopython-1.87> test_SeqIO_SeqXML ... ok python3.14-biopython-1.87> test_SeqIO_SffIO ... ok python3.14-biopython-1.87> test_SeqIO_SnapGene ... ok python3.14-biopython-1.87> test_SeqIO_TwoBitIO ... ok python3.14-biopython-1.87> test_SeqIO_UniprotIO ... ok python3.14-biopython-1.87> test_SeqIO_Xdna ... ok python3.14-biopython-1.87> test_SeqIO_features ... ok python3.14-biopython-1.87> test_SeqIO_index ... ok python3.14-biopython-1.87> test_SeqIO_online ... skipping. internet not available python3.14-biopython-1.87> test_SeqIO_write ... ok python3.14-biopython-1.87> test_SeqRecord ... ok python3.14-biopython-1.87> test_SeqUtils ... ok python3.14-biopython-1.87> test_Seq_objs ... ok python3.14-biopython-1.87> test_SwissProt ... ok python3.14-biopython-1.87> test_TogoWS ... skipping. internet not available python3.14-biopython-1.87> test_TreeConstruction ... ok python3.14-biopython-1.87> test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file python3.14-biopython-1.87> test_UniGene ... ok python3.14-biopython-1.87> test_UniProt ... skipping. internet not available python3.14-biopython-1.87> test_UniProt_GOA ... ok python3.14-biopython-1.87> test_align ... ok python3.14-biopython-1.87> test_align_substitution_matrices ... ok python3.14-biopython-1.87> test_bgzf ... ok python3.14-biopython-1.87> test_cellosaurus ... ok python3.14-biopython-1.87> test_codonalign ... ok python3.14-biopython-1.87> test_geo ... ok python3.14-biopython-1.87> test_mmtf ... skipping. Error: Install mmtf-python to use Bio.PDB.mmtf python3.14-biopython-1.87> python3.14-biopython-1.87> test_mmtf_online ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) python3.14-biopython-1.87> python3.14-biopython-1.87> test_motifs ... ok python3.14-biopython-1.87> test_motifs_online ... skipping. internet not available python3.14-biopython-1.87> test_pairwise2 ... /nix/store/zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87/lib/python3.14/site-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. python3.14-biopython-1.87> warnings.warn( python3.14-biopython-1.87> ok python3.14-biopython-1.87> test_pairwise2_no_C ... ok python3.14-biopython-1.87> test_pairwise_aligner ... ok python3.14-biopython-1.87> test_pairwise_alignment_map ... ok python3.14-biopython-1.87> test_phenotype ... ok python3.14-biopython-1.87> test_phenotype_fit ... skipping. Install SciPy if you want to use Bio.phenotype fit functionality. python3.14-biopython-1.87> test_prodoc ... ok python3.14-biopython-1.87> test_prosite ... ok python3.14-biopython-1.87> test_seq ... ok python3.14-biopython-1.87> test_translate ... ok python3.14-biopython-1.87> Bio docstring test ... ok python3.14-biopython-1.87> Bio.Affy docstring test ... ok python3.14-biopython-1.87> Bio.Affy.CelFile docstring test ... ok python3.14-biopython-1.87> Bio.Align docstring test ... ok python3.14-biopython-1.87> Bio.Align.AlignInfo docstring test ... ok python3.14-biopython-1.87> Bio.Align.a2m docstring test ... ok python3.14-biopython-1.87> Bio.Align.analysis docstring test ... ok python3.14-biopython-1.87> Bio.Align.bed docstring test ... ok python3.14-biopython-1.87> Bio.Align.bigbed docstring test ... ok python3.14-biopython-1.87> Bio.Align.bigmaf docstring test ... ok python3.14-biopython-1.87> Bio.Align.bigpsl docstring test ... ok python3.14-biopython-1.87> Bio.Align.chain docstring test ... ok python3.14-biopython-1.87> Bio.Align.clustal docstring test ... ok python3.14-biopython-1.87> Bio.Align.emboss docstring test ... ok python3.14-biopython-1.87> Bio.Align.exonerate docstring test ... ok python3.14-biopython-1.87> Bio.Align.fasta docstring test ... ok python3.14-biopython-1.87> Bio.Align.hhr docstring test ... ok python3.14-biopython-1.87> Bio.Align.interfaces docstring test ... ok python3.14-biopython-1.87> Bio.Align.maf docstring test ... ok python3.14-biopython-1.87> Bio.Align.mauve docstring test ... ok python3.14-biopython-1.87> Bio.Align.msf docstring test ... ok python3.14-biopython-1.87> Bio.Align.nexus docstring test ... ok python3.14-biopython-1.87> Bio.Align.phylip docstring test ... ok python3.14-biopython-1.87> Bio.Align.psl docstring test ... ok python3.14-biopython-1.87> Bio.Align.sam docstring test ... ok python3.14-biopython-1.87> Bio.Align.stockholm docstring test ... ok python3.14-biopython-1.87> Bio.Align.substitution_matrices docstring test ... ok python3.14-biopython-1.87> Bio.Align.tabular docstring test ... ok python3.14-biopython-1.87> Bio.AlignIO docstring test ... ok python3.14-biopython-1.87> Bio.AlignIO.ClustalIO docstring test ... ok python3.14-biopython-1.87> Bio.AlignIO.EmbossIO docstring test ... ok python3.14-biopython-1.87> Bio.AlignIO.FastaIO docstring test ... ok python3.14-biopython-1.87> Bio.AlignIO.Interfaces docstring test ... ok python3.14-biopython-1.87> Bio.AlignIO.MafIO docstring test ... ok python3.14-biopython-1.87> Bio.AlignIO.MauveIO docstring test ... ok python3.14-biopython-1.87> Bio.AlignIO.MsfIO docstring test ... ok python3.14-biopython-1.87> Bio.AlignIO.NexusIO docstring test ... ok python3.14-biopython-1.87> Bio.AlignIO.PhylipIO docstring test ... ok python3.14-biopython-1.87> Bio.AlignIO.StockholmIO docstring test ... ok python3.14-biopython-1.87> Bio.Blast docstring test ... ok python3.14-biopython-1.87> Bio.Blast.NCBIWWW docstring test ... ok python3.14-biopython-1.87> Bio.Blast.NCBIXML docstring test ... ok python3.14-biopython-1.87> Bio.Blast._parser docstring test ... ok python3.14-biopython-1.87> Bio.Blast._writers docstring test ... ok python3.14-biopython-1.87> Bio.CAPS docstring test ... ok python3.14-biopython-1.87> Bio.Cluster docstring test ... ok python3.14-biopython-1.87> Bio.Compass docstring test ... ok python3.14-biopython-1.87> Bio.Data docstring test ... ok python3.14-biopython-1.87> Bio.Data.CodonTable docstring test ... ok python3.14-biopython-1.87> Bio.Data.IUPACData docstring test ... ok python3.14-biopython-1.87> Bio.Data.PDBData docstring test ... ok python3.14-biopython-1.87> Bio.Emboss docstring test ... ok python3.14-biopython-1.87> Bio.Emboss.Primer3 docstring test ... ok python3.14-biopython-1.87> Bio.Emboss.PrimerSearch docstring test ... ok python3.14-biopython-1.87> Bio.Entrez.Parser docstring test ... ok python3.14-biopython-1.87> Bio.ExPASy.Enzyme docstring test ... ok python3.14-biopython-1.87> Bio.ExPASy.Prodoc docstring test ... ok python3.14-biopython-1.87> Bio.ExPASy.Prosite docstring test ... ok python3.14-biopython-1.87> Bio.ExPASy.ScanProsite docstring test ... ok python3.14-biopython-1.87> Bio.File docstring test ... ok python3.14-biopython-1.87> Bio.GenBank docstring test ... ok python3.14-biopython-1.87> Bio.GenBank.Record docstring test ... ok python3.14-biopython-1.87> Bio.GenBank.Scanner docstring test ... ok python3.14-biopython-1.87> Bio.GenBank.utils docstring test ... ok python3.14-biopython-1.87> Bio.Geo docstring test ... ok python3.14-biopython-1.87> Bio.Geo.Record docstring test ... ok python3.14-biopython-1.87> Bio.Graphics docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.BasicChromosome docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.ColorSpiral docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.Comparative docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.DisplayRepresentation docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.Distribution docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.GenomeDiagram docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.GenomeDiagram._Colors docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.GenomeDiagram._CrossLink docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.GenomeDiagram._Diagram docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.GenomeDiagram._Feature docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.GenomeDiagram._Graph docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.GenomeDiagram._GraphSet docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.GenomeDiagram._Track docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Graphics.KGML_vis docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.HMM docstring test ... ok python3.14-biopython-1.87> Bio.KEGG docstring test ... ok python3.14-biopython-1.87> Bio.KEGG.Compound docstring test ... ok python3.14-biopython-1.87> Bio.KEGG.Enzyme docstring test ... ok python3.14-biopython-1.87> Bio.KEGG.Gene docstring test ... ok python3.14-biopython-1.87> Bio.KEGG.KGML docstring test ... ok python3.14-biopython-1.87> Bio.KEGG.KGML.KGML_parser docstring test ... ok python3.14-biopython-1.87> Bio.KEGG.KGML.KGML_pathway docstring test ... ok python3.14-biopython-1.87> Bio.KEGG.Map docstring test ... ok python3.14-biopython-1.87> Bio.KEGG.REST docstring test ... ok python3.14-biopython-1.87> Bio.Medline docstring test ... ok python3.14-biopython-1.87> Bio.NMR docstring test ... ok python3.14-biopython-1.87> Bio.NMR.NOEtools docstring test ... ok python3.14-biopython-1.87> Bio.NMR.xpktools docstring test ... ok python3.14-biopython-1.87> Bio.Nexus docstring test ... ok python3.14-biopython-1.87> Bio.Nexus.Nexus docstring test ... ok python3.14-biopython-1.87> Bio.Nexus.Nodes docstring test ... ok python3.14-biopython-1.87> Bio.Nexus.StandardData docstring test ... ok python3.14-biopython-1.87> Bio.Nexus.Trees docstring test ... ok python3.14-biopython-1.87> Bio.PDB docstring test ... ok python3.14-biopython-1.87> Bio.PDB.AbstractPropertyMap docstring test ... ok python3.14-biopython-1.87> Bio.PDB.Atom docstring test ... ok python3.14-biopython-1.87> Bio.PDB.Chain docstring test ... ok python3.14-biopython-1.87> Bio.PDB.DSSP docstring test ... ok python3.14-biopython-1.87> Bio.PDB.Dice docstring test ... ok python3.14-biopython-1.87> Bio.PDB.Entity docstring test ... ok python3.14-biopython-1.87> Bio.PDB.FragmentMapper docstring test ... ok python3.14-biopython-1.87> Bio.PDB.HSExposure docstring test ... ok python3.14-biopython-1.87> Bio.PDB.MMCIF2Dict docstring test ... ok python3.14-biopython-1.87> Bio.PDB.MMCIFParser docstring test ... ok python3.14-biopython-1.87> Bio.PDB.Model docstring test ... ok python3.14-biopython-1.87> Bio.PDB.NACCESS docstring test ... ok python3.14-biopython-1.87> Bio.PDB.NeighborSearch docstring test ... ok python3.14-biopython-1.87> Bio.PDB.PDBExceptions docstring test ... ok python3.14-biopython-1.87> Bio.PDB.PDBIO docstring test ... ok python3.14-biopython-1.87> Bio.PDB.PDBList docstring test ... ok python3.14-biopython-1.87> Bio.PDB.PDBMLParser docstring test ... ok python3.14-biopython-1.87> Bio.PDB.PDBParser docstring test ... ok python3.14-biopython-1.87> Bio.PDB.PICIO docstring test ... ok python3.14-biopython-1.87> Bio.PDB.PSEA docstring test ... ok python3.14-biopython-1.87> Bio.PDB.Polypeptide docstring test ... ok python3.14-biopython-1.87> Bio.PDB.Residue docstring test ... ok python3.14-biopython-1.87> Bio.PDB.ResidueDepth docstring test ... ok python3.14-biopython-1.87> Bio.PDB.SASA docstring test ... ok python3.14-biopython-1.87> Bio.PDB.SCADIO docstring test ... ok python3.14-biopython-1.87> Bio.PDB.Selection docstring test ... ok python3.14-biopython-1.87> Bio.PDB.Structure docstring test ... ok python3.14-biopython-1.87> Bio.PDB.StructureAlignment docstring test ... ok python3.14-biopython-1.87> Bio.PDB.StructureBuilder docstring test ... ok python3.14-biopython-1.87> Bio.PDB.Superimposer docstring test ... ok python3.14-biopython-1.87> Bio.PDB.alphafold_db docstring test ... ok python3.14-biopython-1.87> Bio.PDB.binary_cif docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.PDB.cealign docstring test ... ok python3.14-biopython-1.87> Bio.PDB.ic_data docstring test ... ok python3.14-biopython-1.87> Bio.PDB.ic_rebuild docstring test ... ok python3.14-biopython-1.87> Bio.PDB.internal_coords docstring test ... ok python3.14-biopython-1.87> Bio.PDB.mmcifio docstring test ... ok python3.14-biopython-1.87> Bio.PDB.mmtf docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.PDB.mmtf.DefaultParser docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.PDB.mmtf.mmtfio docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.PDB.parse_pdb_header docstring test ... ok python3.14-biopython-1.87> Bio.PDB.qcprot docstring test ... ok python3.14-biopython-1.87> Bio.PDB.vectors docstring test ... ok python3.14-biopython-1.87> Bio.Pathway docstring test ... ok python3.14-biopython-1.87> Bio.Pathway.Rep docstring test ... ok python3.14-biopython-1.87> Bio.Pathway.Rep.Graph docstring test ... ok python3.14-biopython-1.87> Bio.Pathway.Rep.MultiGraph docstring test ... ok python3.14-biopython-1.87> Bio.Phylo docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.BaseTree docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.CDAO docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.CDAOIO docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.Phylo.Consensus docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.NeXML docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.NeXMLIO docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.Newick docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.NewickIO docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.NexusIO docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.PAML docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.PAML._paml docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.PAML._parse_baseml docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.PAML._parse_codeml docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.PAML._parse_yn00 docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.PAML.baseml docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.PAML.chi2 docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.PAML.codeml docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.PAML.yn00 docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.PhyloXML docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.PhyloXMLIO docstring test ... ok python3.14-biopython-1.87> Bio.Phylo.TreeConstruction docstring test ... ok python3.14-biopython-1.87> Bio.Phylo._cdao_owl docstring test ... ok python3.14-biopython-1.87> Bio.Phylo._io docstring test ... ok python3.14-biopython-1.87> Bio.Phylo._utils docstring test ... ok python3.14-biopython-1.87> Bio.PopGen docstring test ... ok python3.14-biopython-1.87> Bio.PopGen.GenePop docstring test ... ok python3.14-biopython-1.87> Bio.PopGen.GenePop.FileParser docstring test ... ok python3.14-biopython-1.87> Bio.PopGen.GenePop.LargeFileParser docstring test ... ok python3.14-biopython-1.87> Bio.Restriction docstring test ... ok python3.14-biopython-1.87> Bio.Restriction.PrintFormat docstring test ... ok python3.14-biopython-1.87> Bio.Restriction.Restriction docstring test ... ok python3.14-biopython-1.87> Bio.Restriction.Restriction_Dictionary docstring test ... ok python3.14-biopython-1.87> Bio.SCOP docstring test ... ok python3.14-biopython-1.87> Bio.SCOP.Cla docstring test ... ok python3.14-biopython-1.87> Bio.SCOP.Des docstring test ... ok python3.14-biopython-1.87> Bio.SCOP.Dom docstring test ... ok python3.14-biopython-1.87> Bio.SCOP.Hie docstring test ... ok python3.14-biopython-1.87> Bio.SCOP.Raf docstring test ... ok python3.14-biopython-1.87> Bio.SCOP.Residues docstring test ... ok python3.14-biopython-1.87> Bio.SVDSuperimposer docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.BlastIO docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.BlastIO.blast_tab docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.BlastIO.blast_xml docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.BlatIO docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.ExonerateIO docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.ExonerateIO._base docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.FastaIO docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.HHsuiteIO docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.HmmerIO docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.HmmerIO._base docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.InfernalIO docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.InfernalIO._base docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.InfernalIO.infernal_tab docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.InfernalIO.infernal_text docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.InterproscanIO docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO._index docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO._model docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO._model._base docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO._model.hit docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO._model.hsp docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO._model.query docstring test ... ok python3.14-biopython-1.87> Bio.SearchIO._utils docstring test ... ok python3.14-biopython-1.87> Bio.Seq docstring test ... ok python3.14-biopython-1.87> Bio.SeqFeature docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.AbiIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.AceIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.FastaIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.GckIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.GfaIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.IgIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.InsdcIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.Interfaces docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.NibIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.PdbIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.PhdIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.PirIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.QualityIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.SeqXmlIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.SffIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.SnapGeneIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.SwissIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.TabIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.TwoBitIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.UniprotIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO.XdnaIO docstring test ... ok python3.14-biopython-1.87> Bio.SeqIO._index docstring test ... ok python3.14-biopython-1.87> Bio.SeqRecord docstring test ... ok python3.14-biopython-1.87> Bio.SeqUtils docstring test ... ok python3.14-biopython-1.87> Bio.SeqUtils.CheckSum docstring test ... ok python3.14-biopython-1.87> Bio.SeqUtils.IsoelectricPoint docstring test ... ok python3.14-biopython-1.87> Bio.SeqUtils.MeltingTemp docstring test ... ok python3.14-biopython-1.87> Bio.SeqUtils.ProtParam docstring test ... ok python3.14-biopython-1.87> Bio.SeqUtils.ProtParamData docstring test ... ok python3.14-biopython-1.87> Bio.SeqUtils.lcc docstring test ... ok python3.14-biopython-1.87> Bio.Sequencing docstring test ... ok python3.14-biopython-1.87> Bio.Sequencing.Ace docstring test ... ok python3.14-biopython-1.87> Bio.Sequencing.Phd docstring test ... ok python3.14-biopython-1.87> Bio.SwissProt docstring test ... ok python3.14-biopython-1.87> Bio.SwissProt.KeyWList docstring test ... ok python3.14-biopython-1.87> Bio.UniGene docstring test ... ok python3.14-biopython-1.87> Bio.UniProt.GOA docstring test ... ok python3.14-biopython-1.87> Bio._utils docstring test ... ok python3.14-biopython-1.87> Bio.bgzf docstring test ... ok python3.14-biopython-1.87> Bio.codonalign docstring test ... ok python3.14-biopython-1.87> Bio.codonalign.codonalignment docstring test ... ok python3.14-biopython-1.87> Bio.codonalign.codonseq docstring test ... ok python3.14-biopython-1.87> Bio.motifs docstring test ... ok python3.14-biopython-1.87> Bio.motifs.alignace docstring test ... ok python3.14-biopython-1.87> Bio.motifs.clusterbuster docstring test ... ok python3.14-biopython-1.87> Bio.motifs.jaspar docstring test ... ok python3.14-biopython-1.87> Bio.motifs.jaspar.db docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> Bio.motifs.mast docstring test ... ok python3.14-biopython-1.87> Bio.motifs.matrix docstring test ... ok python3.14-biopython-1.87> Bio.motifs.meme docstring test ... ok python3.14-biopython-1.87> Bio.motifs.minimal docstring test ... ok python3.14-biopython-1.87> Bio.motifs.pfm docstring test ... ok python3.14-biopython-1.87> Bio.motifs.thresholds docstring test ... ok python3.14-biopython-1.87> Bio.motifs.transfac docstring test ... ok python3.14-biopython-1.87> Bio.motifs.xms docstring test ... ok python3.14-biopython-1.87> Bio.pairwise2 docstring test ... ok python3.14-biopython-1.87> Bio.phenotype docstring test ... ok python3.14-biopython-1.87> Bio.phenotype.phen_micro docstring test ... ok python3.14-biopython-1.87> Bio.phenotype.pm_fitting docstring test ... skipped, missing Python dependency python3.14-biopython-1.87> BioSQL docstring test ... ok python3.14-biopython-1.87> BioSQL.BioSeq docstring test ... ok python3.14-biopython-1.87> BioSQL.BioSeqDatabase docstring test ... ok python3.14-biopython-1.87> BioSQL.DBUtils docstring test ... ok python3.14-biopython-1.87> BioSQL.Loader docstring test ... ok python3.14-biopython-1.87> ---------------------------------------------------------------------- python3.14-biopython-1.87> Ran 501 tests in 173.835 seconds python3.14-biopython-1.87> python3.14-biopython-1.87> installCheckPhase completed in 2 minutes 58 seconds python3.14-biopython-1.87> Running phase: pythonCatchConflictsPhase python3.14-biopython-1.87> Running phase: pythonRemoveBinBytecodePhase python3.14-biopython-1.87> Running phase: pythonImportsCheckPhase python3.14-biopython-1.87> Executing pythonImportsCheckPhase python3.14-biopython-1.87> Check whether the following modules can be imported: Bio python3.14-biopython-1.87> Running phase: pythonMetadataCheckPhase python3.14-biopython-1.87> Executing pythonMetadataCheckPhase building '/nix/store/z748a4mqd31aqvqs83qfg9v82bigvzjw-python3.14-pydna-5.5.16.drv' python3.14-pydna-5.5.16> Sourcing python-remove-tests-dir-hook python3.14-pydna-5.5.16> Sourcing python-catch-conflicts-hook.sh python3.14-pydna-5.5.16> Sourcing python-remove-bin-bytecode-hook.sh python3.14-pydna-5.5.16> Sourcing pypa-build-hook python3.14-pydna-5.5.16> Using pypaBuildPhase python3.14-pydna-5.5.16> Sourcing python-runtime-deps-check-hook python3.14-pydna-5.5.16> Using pythonRuntimeDepsCheckHook python3.14-pydna-5.5.16> Sourcing pypa-install-hook python3.14-pydna-5.5.16> Using pypaInstallPhase python3.14-pydna-5.5.16> Sourcing python-imports-check-hook.sh python3.14-pydna-5.5.16> Using pythonImportsCheckPhase python3.14-pydna-5.5.16> Sourcing python-metadata-check-hook.sh python3.14-pydna-5.5.16> Using pythonMetadataCheckPhase python3.14-pydna-5.5.16> Sourcing python-namespaces-hook python3.14-pydna-5.5.16> Sourcing python-catch-conflicts-hook.sh python3.14-pydna-5.5.16> Using checkPhaseThreadLimitHook python3.14-pydna-5.5.16> Running phase: unpackPhase python3.14-pydna-5.5.16> unpacking source archive /nix/store/rx6ia5j881xwiajjd5j0nznxsy38blqx-pydna-5.5.16.tar.gz python3.14-pydna-5.5.16> source root is pydna-5.5.16 python3.14-pydna-5.5.16> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "pydna-5.5.16/src/pydna/utils.py" python3.14-pydna-5.5.16> Running phase: patchPhase python3.14-pydna-5.5.16> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-pydna-5.5.16> Running phase: configurePhase python3.14-pydna-5.5.16> no configure script, doing nothing python3.14-pydna-5.5.16> Running phase: buildPhase python3.14-pydna-5.5.16> Executing pypaBuildPhase python3.14-pydna-5.5.16> Setting POETRY_DYNAMIC_VERSIONING_BYPASS to 5.5.16 python3.14-pydna-5.5.16> Creating a wheel... python3.14-pydna-5.5.16> pypa build flags: --no-isolation --outdir dist/ --wheel python3.14-pydna-5.5.16> * Getting build dependencies for wheel... python3.14-pydna-5.5.16> * Building wheel... python3.14-pydna-5.5.16> Successfully built pydna-5.5.16-py3-none-any.whl python3.14-pydna-5.5.16> Finished creating a wheel... python3.14-pydna-5.5.16> /build/pydna-5.5.16/dist /build/pydna-5.5.16 python3.14-pydna-5.5.16> Unpacking to: unpacked/pydna-5.5.16...OK python3.14-pydna-5.5.16> Repacking wheel as ./pydna-5.5.16-py3-none-any.whl...OK python3.14-pydna-5.5.16> /build/pydna-5.5.16 python3.14-pydna-5.5.16> Finished executing pypaBuildPhase python3.14-pydna-5.5.16> Running phase: pythonRuntimeDepsCheckHook python3.14-pydna-5.5.16> Executing pythonRuntimeDepsCheck python3.14-pydna-5.5.16> Checking runtime dependencies for pydna-5.5.16-py3-none-any.whl python3.14-pydna-5.5.16> Finished executing pythonRuntimeDepsCheck python3.14-pydna-5.5.16> Running phase: installPhase python3.14-pydna-5.5.16> Executing pypaInstallPhase python3.14-pydna-5.5.16> Successfully installed pydna-5.5.16-py3-none-any.whl python3.14-pydna-5.5.16> Finished executing pypaInstallPhase python3.14-pydna-5.5.16> Running phase: pythonOutputDistPhase python3.14-pydna-5.5.16> Executing pythonOutputDistPhase python3.14-pydna-5.5.16> Finished executing pythonOutputDistPhase python3.14-pydna-5.5.16> Running phase: fixupPhase python3.14-pydna-5.5.16> shrinking RPATHs of ELF executables and libraries in /nix/store/q21hq7smsngrdsd6bi3dl702nx7mnr97-python3.14-pydna-5.5.16 python3.14-pydna-5.5.16> checking for references to /build/ in /nix/store/q21hq7smsngrdsd6bi3dl702nx7mnr97-python3.14-pydna-5.5.16... python3.14-pydna-5.5.16> patching script interpreter paths in /nix/store/q21hq7smsngrdsd6bi3dl702nx7mnr97-python3.14-pydna-5.5.16 python3.14-pydna-5.5.16> /nix/store/q21hq7smsngrdsd6bi3dl702nx7mnr97-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/amplicon.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/bin/python3" python3.14-pydna-5.5.16> /nix/store/q21hq7smsngrdsd6bi3dl702nx7mnr97-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/fakeseq.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/bin/python3" python3.14-pydna-5.5.16> /nix/store/q21hq7smsngrdsd6bi3dl702nx7mnr97-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/gel.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/bin/python3" python3.14-pydna-5.5.16> /nix/store/q21hq7smsngrdsd6bi3dl702nx7mnr97-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/ladders.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/bin/python3" python3.14-pydna-5.5.16> /nix/store/q21hq7smsngrdsd6bi3dl702nx7mnr97-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/seqrecord.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/d64q19q1xjdwfhqx6czvrjgrhq0n3lcc-python3-3.14.7/bin/python3" python3.14-pydna-5.5.16> stripping (with command strip and flags -S -p) in /nix/store/q21hq7smsngrdsd6bi3dl702nx7mnr97-python3.14-pydna-5.5.16/lib python3.14-pydna-5.5.16> shrinking RPATHs of ELF executables and libraries in /nix/store/haqzmqc9sn683w6ldi3issp8ax50cbpb-python3.14-pydna-5.5.16-dist python3.14-pydna-5.5.16> checking for references to /build/ in /nix/store/haqzmqc9sn683w6ldi3issp8ax50cbpb-python3.14-pydna-5.5.16-dist... python3.14-pydna-5.5.16> patching script interpreter paths in /nix/store/haqzmqc9sn683w6ldi3issp8ax50cbpb-python3.14-pydna-5.5.16-dist python3.14-pydna-5.5.16> Executing pythonRemoveTestsDir python3.14-pydna-5.5.16> Finished executing pythonRemoveTestsDir python3.14-pydna-5.5.16> Running phase: pythonCatchConflictsPhase python3.14-pydna-5.5.16> Running phase: pythonRemoveBinBytecodePhase python3.14-pydna-5.5.16> Running phase: pythonImportsCheckPhase python3.14-pydna-5.5.16> Executing pythonImportsCheckPhase python3.14-pydna-5.5.16> Check whether the following modules can be imported: pydna pydna.assembly pydna.dseqrecord python3.14-pydna-5.5.16> Running phase: pythonMetadataCheckPhase python3.14-pydna-5.5.16> Executing pythonMetadataCheckPhase post-build step Route build to niks3: ok Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org time=2026-09-21T21:20:51.341+09:00 level=INFO msg="Uploading 12 paths to niks3.sjanglab.org (43 already cached)" time=2026-09-21T21:20:51.341+09:00 level=INFO msg="Uploading b1xz9sdqiqwp9hry2cqk9s119jhp87z7-python3.14-cython-3.2.5 (19.8MB)" time=2026-09-21T21:20:51.341+09:00 level=INFO msg="Uploading q21hq7smsngrdsd6bi3dl702nx7mnr97-python3.14-pydna-5.5.16 (2.4MB)" time=2026-09-21T21:20:51.341+09:00 level=INFO msg="Uploading 7lr7m458aqcp9a89hswbvdlqglh9ajm2-python3.14-appdirs-1.4.4 (92.8KB)" time=2026-09-21T21:20:51.343+09:00 level=INFO msg="Uploading 2dk27gn59hysnaz50sqij3dl1gpmakd8-python3.14-regex-2026.7.11 (2.4MB)" time=2026-09-21T21:20:51.343+09:00 level=INFO msg="Uploading w7g0g20dbbkjp59s5gx5k93r0sh7qn2a-python3.14-pyfiglet-1.0.4 (6.8MB)" time=2026-09-21T21:20:51.343+09:00 level=INFO msg="Uploading 6sm8k114zxlpdrhqij5cm1gwifr47y2x-python3.14-pydivsufsort-0.0.20 (1.1MB)" time=2026-09-21T21:20:51.343+09:00 level=INFO msg="Uploading ngjj9jfcbkqxr5biqcbaa6i0psjmz3jw-python3.14-seguid-0.2.1 (116.9KB)" time=2026-09-21T21:20:51.343+09:00 level=INFO msg="Uploading 31zrrvz0pwc2yr5nqsr2bbag3zbls92j-python3.14-opencloning-linkml-1.0.0 (2.1MB)" time=2026-09-21T21:20:51.343+09:00 level=INFO msg="Uploading 6qys7q5mg84634gd0qrpf034fwmwivvq-python3.14-wcwidth-0.8.2 (6.7MB)" time=2026-09-21T21:20:51.341+09:00 level=INFO msg="Uploading 56kvwbvs51ls9v2lcx3y37x0llxlyqhs-python3.14-sgffp-0.22.1 (893.5KB)" time=2026-09-21T21:20:51.343+09:00 level=INFO msg="Uploading zz6jsxagkvv6wy4695ryhyd00qnr08pi-python3.14-biopython-1.87 (23.6MB)" time=2026-09-21T21:20:51.347+09:00 level=INFO msg="Uploading b14r21sdzg79l5bhgak3qr8jji1ci742-python3.14-prettytable-3.18.0 (519.0KB)" time=2026-09-21T21:20:53.799+09:00 level=INFO msg="Uploading 12 narinfos" time=2026-09-21T21:20:54.590+09:00 level=INFO msg="Upload complete. (6.832s)"