these 2 derivations will be built: /nix/store/v447fm3wy49sincyimhrnxchi800yqr7-source.drv /nix/store/9k6rxaqs5y21pb1rf3qziadwvks5mqw6-foldseek-10-941cd33.drv these 5 paths will be fetched (958.6 KiB download, 2.6 MiB unpacked): /nix/store/cmyf4p98lh45zcrc1iy4lwd8nhzk2nsi-bzip2-1.0.8-dev /nix/store/3yd2lb2pcn2ir6w31wb0s3wc4fr8wvfk-openmp-21.1.8 /nix/store/gxsghm45wxd0qb8cnvr7n652mnm0g3li-openmp-21.1.8-dev /nix/store/pbks72b5l9g2613lvsx3h6f5bb6yc8y8-pkg-config-0.29.2 /nix/store/29d1c5xk6w3rwl7yvdfwl90whslv5h54-pkg-config-wrapper-0.29.2 building '/nix/store/d010hd8f10zwr3x5qjssbk0i5ymgl3iy-source.drv' source> structuredAttrs is enabled source> source> trying https://github.com/steineggerlab/foldseek/archive/10-941cd33.tar.gz source> % Total % Received % Xferd Average Speed Time Time Time Current source> Dload Upload Total Spent Left Speed source> source> 0 0 0 0 0 0 0 0 0 source> 0 0 0 0 0 0 0 0 0 source> 0 0 0 0 0 0 0 0 0 source> source> 0 0 0 0 0 0 0 0 0 source> 100 417.3k 0 417.3k 0 0 290.0k 0 00:01 371.1k source> 100 14.73M 0 14.73M 0 0 5.83M 0 00:02 6.66M source> 100 17.93M 0 17.93M 0 0 6.22M 0 00:02 6.66M source> 100 17.93M 0 17.93M 0 0 6.22M 0 00:02 6.66M source> 100 17.93M 0 17.93M 0 0 6.22M 0 00:02 6.66M source> unpacking source archive /build/download.tar.gz building '/nix/store/9k6rxaqs5y21pb1rf3qziadwvks5mqw6-foldseek-10-941cd33.drv' foldseek-10-941cd33> Using checkPhaseThreadLimitHook foldseek-10-941cd33> Running phase: unpackPhase foldseek-10-941cd33> unpacking source archive /nix/store/1g2298s2bz7py868im4h43k0v913xzgd-source foldseek-10-941cd33> source root is source foldseek-10-941cd33> Running phase: patchPhase foldseek-10-941cd33> patching script interpreter paths in lib/mmseqs/cmake/xxdi.pl foldseek-10-941cd33> lib/mmseqs/cmake/xxdi.pl: interpreter directive changed from "#!/usr/bin/env perl" to "/nix/store/w03i01kiakf4wz7jbp1l59c0bhb3pjca-perl-5.42.3/bin/perl" foldseek-10-941cd33> patching script interpreter paths in cmake/xxdi.pl foldseek-10-941cd33> find: 'cmake/xxdi.pl': No such file or directory foldseek-10-941cd33> Running phase: updateAutotoolsGnuConfigScriptsPhase foldseek-10-941cd33> Running phase: configurePhase foldseek-10-941cd33> cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/share/doc/foldseek -DCMAKE_INSTALL_INFODIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/share/man -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/include -DCMAKE_INSTALL_SBINDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/lib -DCMAKE_STRIP=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/strip -DCMAKE_RANLIB=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/ranlib -DCMAKE_AR=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/ar -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_INSTALL_PREFIX=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 -DHAVE_AVX2=1 foldseek-10-941cd33> -- The C compiler identification is GNU 15.3.0 foldseek-10-941cd33> -- The CXX compiler identification is GNU 15.3.0 foldseek-10-941cd33> -- Detecting C compiler ABI info foldseek-10-941cd33> -- Detecting C compiler ABI info - done foldseek-10-941cd33> -- Check for working C compiler: /nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/gcc - skipped foldseek-10-941cd33> -- Detecting C compile features foldseek-10-941cd33> -- Detecting C compile features - done foldseek-10-941cd33> -- Detecting CXX compiler ABI info foldseek-10-941cd33> -- Detecting CXX compiler ABI info - done foldseek-10-941cd33> -- Check for working CXX compiler: /nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/g++ - skipped foldseek-10-941cd33> -- Detecting CXX compile features foldseek-10-941cd33> -- Detecting CXX compile features - done foldseek-10-941cd33> CMake Warning (deprecated) at lib/mmseqs/CMakeLists.txt:1 (cmake_minimum_required): foldseek-10-941cd33> Compatibility with CMake < 3.10 will be removed from a future version of foldseek-10-941cd33> CMake. foldseek-10-941cd33> foldseek-10-941cd33> Update the VERSION argument value. Or, use the ... syntax foldseek-10-941cd33> to tell CMake that the project requires at least but has been updated foldseek-10-941cd33> to work with policies introduced by or earlier. foldseek-10-941cd33> This warning is for project developers. Use -Wno-author or -Wno-deprecated foldseek-10-941cd33> to suppress it. foldseek-10-941cd33> foldseek-10-941cd33> -- Source Directory: /build/source/lib/mmseqs foldseek-10-941cd33> -- Project Directory: /build/source/lib/mmseqs foldseek-10-941cd33> -- Compiler is GNU foldseek-10-941cd33> -- ZSTD VERSION 1.3.8 foldseek-10-941cd33> CMake Warning (deprecated) at lib/mmseqs/lib/tinyexpr/CMakeLists.txt:1 (cmake_minimum_required): foldseek-10-941cd33> Compatibility with CMake < 3.10 will be removed from a future version of foldseek-10-941cd33> CMake. foldseek-10-941cd33> foldseek-10-941cd33> Update the VERSION argument value. Or, use the ... syntax foldseek-10-941cd33> to tell CMake that the project requires at least but has been updated foldseek-10-941cd33> to work with policies introduced by or earlier. foldseek-10-941cd33> This warning is for project developers. Use -Wno-author or -Wno-deprecated foldseek-10-941cd33> to suppress it. foldseek-10-941cd33> foldseek-10-941cd33> -- xxd not found, using xxdi.pl instead foldseek-10-941cd33> -- ShellCheck disabled foldseek-10-941cd33> -- Performing Test HAVE_POSIX_FADVISE foldseek-10-941cd33> -- Performing Test HAVE_POSIX_FADVISE - Success foldseek-10-941cd33> -- Performing Test HAVE_POSIX_MADVISE foldseek-10-941cd33> -- Performing Test HAVE_POSIX_MADVISE - Success foldseek-10-941cd33> -- Performing Test ATOMIC_NATIVE foldseek-10-941cd33> -- Performing Test ATOMIC_NATIVE - Failed foldseek-10-941cd33> -- Performing Test ATOMIC_WITH_LIB foldseek-10-941cd33> -- Performing Test ATOMIC_WITH_LIB - Success foldseek-10-941cd33> -- Found Atomic: -latomic foldseek-10-941cd33> -- IPS4O sorting works foldseek-10-941cd33> -- Found ZLIB foldseek-10-941cd33> -- Performing Test HAVE_ZLIB_CHECK foldseek-10-941cd33> -- Performing Test HAVE_ZLIB_CHECK - Success foldseek-10-941cd33> -- ZLIB works foldseek-10-941cd33> -- Found BZLIB foldseek-10-941cd33> -- Performing Test HAVE_BZLIB_CHECK foldseek-10-941cd33> -- Performing Test HAVE_BZLIB_CHECK - Success foldseek-10-941cd33> -- BZLIB works foldseek-10-941cd33> -- Found OpenMP foldseek-10-941cd33> CMake Warning (deprecated) at lib/foldcomp/CMakeLists.txt:2 (cmake_minimum_required): foldseek-10-941cd33> Compatibility with CMake < 3.10 will be removed from a future version of foldseek-10-941cd33> CMake. foldseek-10-941cd33> foldseek-10-941cd33> Update the VERSION argument value. Or, use the ... syntax foldseek-10-941cd33> to tell CMake that the project requires at least but has been updated foldseek-10-941cd33> to work with policies introduced by or earlier. foldseek-10-941cd33> This warning is for project developers. Use -Wno-author or -Wno-deprecated foldseek-10-941cd33> to suppress it. foldseek-10-941cd33> foldseek-10-941cd33> -- xxd not found, using xxdi.pl instead foldseek-10-941cd33> -- ShellCheck not found foldseek-10-941cd33> -- Rust Target: x86_64-unknown-linux-gnu foldseek-10-941cd33> -- Determining required link libraries for target x86_64-unknown-linux-gnu foldseek-10-941cd33> -- Required static libs for target x86_64-unknown-linux-gnu: gcc_s;util;rt;pthread;m;dl;c foldseek-10-941cd33> -- Found Rust: /nix/store/vy0xilifxb02fwal0wihsrwc8s69rlyk-rustc-wrapper-1.98.1/bin/rustc (found version "1.98.1") foldseek-10-941cd33> -- Using Corrosion as a subdirectory foldseek-10-941cd33> -- Rust Feature: simd_avx2 foldseek-10-941cd33> -- Could NOT find Git (missing: GIT_EXECUTABLE) foldseek-10-941cd33> CMake Warning at lib/prostt5/cmake/build-info.cmake:14 (message): foldseek-10-941cd33> Git not found. Build info will not be accurate. foldseek-10-941cd33> Call Stack (most recent call first): foldseek-10-941cd33> lib/prostt5/CMakeLists.txt:82 (include) foldseek-10-941cd33> foldseek-10-941cd33> foldseek-10-941cd33> -- Performing Test CMAKE_HAVE_LIBC_PTHREAD foldseek-10-941cd33> -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success foldseek-10-941cd33> -- Found Threads: TRUE foldseek-10-941cd33> -- Warning: ccache not found - consider installing it for faster compilation or disable this warning with GGML_CCACHE=OFF foldseek-10-941cd33> -- CMAKE_SYSTEM_PROCESSOR: x86_64 foldseek-10-941cd33> -- Including CPU backend foldseek-10-941cd33> -- x86 detected foldseek-10-941cd33> -- Adding CPU backend variant ggml-cpu: -msse2;-msse3;-mssse3;-msse4.1;-mf16c;-mfma;-mavx;-mavx2 GGML_SSE41;GGML_F16C;GGML_FMA;GGML_AVX;GGML_AVX2 foldseek-10-941cd33> -- Configuring done (3.5s) foldseek-10-941cd33> -- Generating done (0.3s) foldseek-10-941cd33> CMake Warning (unused-cli): foldseek-10-941cd33> Manually-specified variables were not used by the project: foldseek-10-941cd33> foldseek-10-941cd33> BUILD_TESTING foldseek-10-941cd33> CMAKE_EXPORT_NO_PACKAGE_REGISTRY foldseek-10-941cd33> foldseek-10-941cd33> foldseek-10-941cd33> -- Build files have been written to: /build/source/build foldseek-10-941cd33> cmake: enabled parallel building foldseek-10-941cd33> cmake: enabled parallel installing foldseek-10-941cd33> Running phase: buildPhase foldseek-10-941cd33> build flags: -j48 SHELL=/nix/store/svx59425zxp552p2b8gm11qj5r09b56i-bash-5.3p15/bin/bash foldseek-10-941cd33> [ 0%] Building CXX object lib/mmseqs/lib/tantan/CMakeFiles/tantan.dir/tantan.cpp.o foldseek-10-941cd33> [ 0%] Building C object lib/mmseqs/lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o foldseek-10-941cd33> [ 0%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o foldseek-10-941cd33> [ 0%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/entropy_common.c.o foldseek-10-941cd33> [ 1%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o foldseek-10-941cd33> [ 2%] Building CXX object lib/mmseqs/lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o foldseek-10-941cd33> [ 2%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/error_private.c.o foldseek-10-941cd33> [ 2%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o foldseek-10-941cd33> [ 3%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/threading.c.o foldseek-10-941cd33> [ 3%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o foldseek-10-941cd33> [ 4%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o foldseek-10-941cd33> [ 5%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/fse_decompress.c.o foldseek-10-941cd33> [ 5%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-alloc.c.o foldseek-10-941cd33> [ 5%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/pool.c.o foldseek-10-941cd33> [ 5%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o foldseek-10-941cd33> [ 5%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/atom_coordinate.cpp.o foldseek-10-941cd33> [ 5%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml.c.o foldseek-10-941cd33> [ 6%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o foldseek-10-941cd33> [ 6%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/zstd_common.c.o foldseek-10-941cd33> [ 6%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o foldseek-10-941cd33> [ 7%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/xxhash.c.o foldseek-10-941cd33> [ 8%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/amino_acid.cpp.o foldseek-10-941cd33> [ 8%] Generating ../generated/VTML40.out.h foldseek-10-941cd33> [ 8%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o foldseek-10-941cd33> [ 9%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/foldcomp.cpp.o foldseek-10-941cd33> [ 10%] Generating ../generated/VTML80.out.h foldseek-10-941cd33> [ 11%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/nerf.cpp.o foldseek-10-941cd33> [ 11%] Building C object lib/mmseqs/lib/microtar/CMakeFiles/microtar.dir/microtar.c.o foldseek-10-941cd33> [ 11%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o foldseek-10-941cd33> [ 11%] Built target cargo-prebuild_block_aligner_c foldseek-10-941cd33> [ 11%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-opt.cpp.o foldseek-10-941cd33> [ 11%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/hist.c.o foldseek-10-941cd33> [ 11%] Generating ../generated/easystructuresearch.sh.h foldseek-10-941cd33> [ 11%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o foldseek-10-941cd33> [ 11%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/fse_compress.c.o foldseek-10-941cd33> [ 11%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-backend.cpp.o foldseek-10-941cd33> [ 11%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/database_reader.cpp.o foldseek-10-941cd33> [ 11%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o foldseek-10-941cd33> [ 11%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/sidechain.cpp.o foldseek-10-941cd33> [ 12%] Generating ../generated/blosum62.out.h foldseek-10-941cd33> [ 12%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o foldseek-10-941cd33> [ 12%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstdmt_compress.c.o foldseek-10-941cd33> [ 12%] Generating ../generated/nucleotide.out.h foldseek-10-941cd33> [ 12%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/huf_compress.c.o foldseek-10-941cd33> [ 12%] Generating ../generated/structurecluster.sh.h foldseek-10-941cd33> [ 12%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/discretizer.cpp.o foldseek-10-941cd33> [ 12%] Generating ../generated/structureindex.sh.h foldseek-10-941cd33> [ 13%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_compress.c.o foldseek-10-941cd33> [ 14%] Linking CXX static library libversion.a foldseek-10-941cd33> [ 14%] Generating ../generated/structuresearch.sh.h foldseek-10-941cd33> [ 14%] Generating ../generated/PAM30.out.h foldseek-10-941cd33> [ 14%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_fast.c.o foldseek-10-941cd33> [ 14%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_double_fast.c.o foldseek-10-941cd33> [ 15%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_lazy.c.o foldseek-10-941cd33> [ 15%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h foldseek-10-941cd33> [ 15%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h foldseek-10-941cd33> [ 15%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h foldseek-10-941cd33> [ 16%] Generating ../generated/structureiterativesearch.sh.h foldseek-10-941cd33> [ 16%] Built target version foldseek-10-941cd33> [ 17%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o foldseek-10-941cd33> [ 18%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-threading.cpp.o foldseek-10-941cd33> [ 18%] Generating ../generated/structurerbh.sh.h foldseek-10-941cd33> [ 18%] Generating ../generated/Library255_may17.lib.h foldseek-10-941cd33> [ 18%] Generating ../generated/structdatabases.sh.h foldseek-10-941cd33> [ 18%] Generating ../generated/libPolished_8.lib.h foldseek-10-941cd33> [ 19%] Generating ../generated/mat3di.out.h foldseek-10-941cd33> [ 19%] Generating ../generated/cs219.lib.h foldseek-10-941cd33> [ 19%] Generating ../generated/krona_prelude.html.h foldseek-10-941cd33> [ 19%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o foldseek-10-941cd33> [ 19%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_opt.c.o foldseek-10-941cd33> [ 19%] Generating ../generated/result_viz_prelude.html.zst.h foldseek-10-941cd33> [ 20%] Generating ../generated/encoder_weights_3di.kerasify.h foldseek-10-941cd33> [ 20%] Generating ../generated/evalue_nn.kerasify.h foldseek-10-941cd33> [ 20%] Generating ../generated/main.js.h foldseek-10-941cd33> [ 21%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/huf_decompress.c.o foldseek-10-941cd33> [ 21%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_ldm.c.o foldseek-10-941cd33> Compiling block_aligner_c v0.4.0 (/build/source/lib/block-aligner/c) foldseek-10-941cd33> [ 21%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-quants.c.o foldseek-10-941cd33> [ 22%] Generating ../generated/K4000.crf.h foldseek-10-941cd33> [ 22%] Generating ../generated/easysearch.sh.h foldseek-10-941cd33> [ 22%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress.c.o foldseek-10-941cd33> [ 22%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o foldseek-10-941cd33> [ 23%] Generating ../generated/easycluster.sh.h foldseek-10-941cd33> /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base': foldseek-10-941cd33> /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] foldseek-10-941cd33> 373 | ret->bound = s->bound; foldseek-10-941cd33> | ^~ foldseek-10-941cd33> In function 'new_expr', foldseek-10-941cd33> inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:372:19: foldseek-10-941cd33> /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc' foldseek-10-941cd33> 88 | te_expr *ret = malloc(size); foldseek-10-941cd33> | ^~~~~~~~~~~~ foldseek-10-941cd33> In function 'new_expr', foldseek-10-941cd33> inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19: foldseek-10-941cd33> /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] foldseek-10-941cd33> 93 | ret->type = type; foldseek-10-941cd33> | ~~~~~~~~~~^~~~~~ foldseek-10-941cd33> /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc' foldseek-10-941cd33> 88 | te_expr *ret = malloc(size); foldseek-10-941cd33> | ^~~~~~~~~~~~ foldseek-10-941cd33> /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base': foldseek-10-941cd33> /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] foldseek-10-941cd33> 367 | ret->value = s->value; foldseek-10-941cd33> | ^~ foldseek-10-941cd33> In function 'new_expr', foldseek-10-941cd33> inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19: foldseek-10-941cd33> /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc' foldseek-10-941cd33> 88 | te_expr *ret = malloc(size); foldseek-10-941cd33> | ^~~~~~~~~~~~ foldseek-10-941cd33> /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base': foldseek-10-941cd33> /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] foldseek-10-941cd33> 446 | ret->value = NAN; foldseek-10-941cd33> | ^~ foldseek-10-941cd33> In function 'new_expr', foldseek-10-941cd33> inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:444:19: foldseek-10-941cd33> /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc' foldseek-10-941cd33> 88 | te_expr *ret = malloc(size); foldseek-10-941cd33> | ^~~~~~~~~~~~ foldseek-10-941cd33> [ 23%] Generating ../generated/easytaxonomy.sh.h foldseek-10-941cd33> [ 23%] Generating ../generated/vendor.js.zst.h foldseek-10-941cd33> [ 23%] Generating ../generated/easyrbh.sh.h foldseek-10-941cd33> [ 23%] Generating ../generated/blastp.sh.h foldseek-10-941cd33> [ 23%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/torsion_angle.cpp.o foldseek-10-941cd33> [ 23%] Linking C static library libmicrotar.a foldseek-10-941cd33> [ 23%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress_block.c.o foldseek-10-941cd33> [ 23%] Built target microtar foldseek-10-941cd33> [ 23%] Generating ../generated/makepaddeddb.sh.h foldseek-10-941cd33> [ 23%] Generating ../generated/blastpgp.sh.h foldseek-10-941cd33> [ 23%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_ddict.c.o foldseek-10-941cd33> [ 24%] Generating ../generated/result2structprofile.sh.h foldseek-10-941cd33> [ 25%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/utility.cpp.o foldseek-10-941cd33> [ 25%] Generating ../generated/map.sh.h foldseek-10-941cd33> [ 26%] Generating ../generated/createstructsubdb.sh.h foldseek-10-941cd33> [ 27%] Generating ../generated/rbh.sh.h foldseek-10-941cd33> [ 28%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/cover.c.o foldseek-10-941cd33> [ 29%] Generating ../generated/linclust.sh.h foldseek-10-941cd33> [ 29%] Generating ../generated/multimersearch.sh.h foldseek-10-941cd33> [ 29%] Generating ../generated/clustering.sh.h foldseek-10-941cd33> [ 29%] Generating ../generated/cascaded_clustering.sh.h foldseek-10-941cd33> [ 29%] Generating ../generated/easymultimersearch.sh.h foldseek-10-941cd33> [ 30%] Generating ../generated/update_clustering.sh.h foldseek-10-941cd33> [ 30%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/fastcover.c.o foldseek-10-941cd33> [ 30%] Generating ../generated/multimercluster.sh.h foldseek-10-941cd33> [ 30%] Generating ../generated/searchtargetprofile.sh.h foldseek-10-941cd33> [ 30%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/divsufsort.c.o foldseek-10-941cd33> [ 30%] Linking C static library libtinyexpr.a foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:32:12 foldseek-10-941cd33> | foldseek-10-941cd33> 32 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> | foldseek-10-941cd33> = note: `#[warn(missing_abi)]` on by default foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:39:12 foldseek-10-941cd33> | foldseek-10-941cd33> 39 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:46:12 foldseek-10-941cd33> | foldseek-10-941cd33> 46 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:61:12 foldseek-10-941cd33> | foldseek-10-941cd33> 61 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:68:12 foldseek-10-941cd33> | foldseek-10-941cd33> 68 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:76:12 foldseek-10-941cd33> | foldseek-10-941cd33> 76 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:86:12 foldseek-10-941cd33> | foldseek-10-941cd33> 86 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:97:12 foldseek-10-941cd33> | foldseek-10-941cd33> 97 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:108:12 foldseek-10-941cd33> | foldseek-10-941cd33> 108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:119:12 foldseek-10-941cd33> | foldseek-10-941cd33> 119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:126:12 foldseek-10-941cd33> | foldseek-10-941cd33> 126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:133:12 foldseek-10-941cd33> | foldseek-10-941cd33> 133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:140:12 foldseek-10-941cd33> | foldseek-10-941cd33> 140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:149:12 foldseek-10-941cd33> | foldseek-10-941cd33> 149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:156:12 foldseek-10-941cd33> | foldseek-10-941cd33> 156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:163:12 foldseek-10-941cd33> | foldseek-10-941cd33> 163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:170:12 foldseek-10-941cd33> | foldseek-10-941cd33> 170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:179:12 foldseek-10-941cd33> | foldseek-10-941cd33> 179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:186:12 foldseek-10-941cd33> | foldseek-10-941cd33> 186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:194:12 foldseek-10-941cd33> | foldseek-10-941cd33> 194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:203:12 foldseek-10-941cd33> | foldseek-10-941cd33> 203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:210:12 foldseek-10-941cd33> | foldseek-10-941cd33> 210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:218:12 foldseek-10-941cd33> | foldseek-10-941cd33> 218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:237:20 foldseek-10-941cd33> | foldseek-10-941cd33> 237 | pub unsafe extern fn $new_name(query_len: usize, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:246:20 foldseek-10-941cd33> | foldseek-10-941cd33> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:259:20 foldseek-10-941cd33> | foldseek-10-941cd33> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:270:20 foldseek-10-941cd33> | foldseek-10-941cd33> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:288:20 foldseek-10-941cd33> | foldseek-10-941cd33> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:295:20 foldseek-10-941cd33> | foldseek-10-941cd33> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:302:20 foldseek-10-941cd33> | foldseek-10-941cd33> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:309:20 foldseek-10-941cd33> | foldseek-10-941cd33> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:237:20 foldseek-10-941cd33> | foldseek-10-941cd33> 237 | pub unsafe extern fn $new_name(query_len: usize, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:246:20 foldseek-10-941cd33> | foldseek-10-941cd33> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:259:20 foldseek-10-941cd33> | foldseek-10-941cd33> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:270:20 foldseek-10-941cd33> | foldseek-10-941cd33> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:288:20 foldseek-10-941cd33> | foldseek-10-941cd33> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:295:20 foldseek-10-941cd33> | foldseek-10-941cd33> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:302:20 foldseek-10-941cd33> | foldseek-10-941cd33> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:309:20 foldseek-10-941cd33> | foldseek-10-941cd33> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:237:20 foldseek-10-941cd33> | foldseek-10-941cd33> 237 | pub unsafe extern fn $new_name(query_len: usize, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:246:20 foldseek-10-941cd33> | foldseek-10-941cd33> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:259:20 foldseek-10-941cd33> | foldseek-10-941cd33> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:270:20 foldseek-10-941cd33> | foldseek-10-941cd33> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:288:20 foldseek-10-941cd33> | foldseek-10-941cd33> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:295:20 foldseek-10-941cd33> | foldseek-10-941cd33> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:302:20 foldseek-10-941cd33> | foldseek-10-941cd33> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:309:20 foldseek-10-941cd33> | foldseek-10-941cd33> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:237:20 foldseek-10-941cd33> | foldseek-10-941cd33> 237 | pub unsafe extern fn $new_name(query_len: usize, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:246:20 foldseek-10-941cd33> | foldseek-10-941cd33> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:259:20 foldseek-10-941cd33> | foldseek-10-941cd33> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:270:20 foldseek-10-941cd33> | foldseek-10-941cd33> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:288:20 foldseek-10-941cd33> | foldseek-10-941cd33> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:295:20 foldseek-10-941cd33> | foldseek-10-941cd33> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:302:20 foldseek-10-941cd33> | foldseek-10-941cd33> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:309:20 foldseek-10-941cd33> | foldseek-10-941cd33> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> [ 30%] Generating ../generated/easymultimercluster.sh.h foldseek-10-941cd33> [ 31%] Generating ../generated/createindex.sh.h foldseek-10-941cd33> [ 31%] Generating ../generated/createtaxdb.sh.h foldseek-10-941cd33> [ 31%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/zdict.c.o foldseek-10-941cd33> [ 31%] Generating ../generated/translated_search.sh.h foldseek-10-941cd33> [ 31%] Built target tinyexpr foldseek-10-941cd33> [ 31%] Generating ../generated/taxpercontig.sh.h foldseek-10-941cd33> [ 33%] Generating ../generated/multihitsearch.sh.h foldseek-10-941cd33> [ 33%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_common.c.o foldseek-10-941cd33> [ 33%] Generating ../generated/multihitdb.sh.h foldseek-10-941cd33> [ 34%] Generating ../generated/enrich.sh.h foldseek-10-941cd33> [ 34%] Generating ../generated/blastn.sh.h foldseek-10-941cd33> [ 34%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_compress.c.o foldseek-10-941cd33> [ 34%] Generating ../generated/searchslicedtargetprofile.sh.h foldseek-10-941cd33> [ 35%] Generating ../generated/taxonomy.sh.h foldseek-10-941cd33> [ 35%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_decompress.c.o foldseek-10-941cd33> [ 35%] Generating ../generated/linsearch.sh.h foldseek-10-941cd33> [ 35%] Generating ../generated/databases.sh.h foldseek-10-941cd33> [ 35%] Generating ../generated/nucleotide_clustering.sh.h foldseek-10-941cd33> [ 35%] Generating ../generated/tsv2exprofiledb.sh.h foldseek-10-941cd33> [ 35%] Generating ../generated/iterativepp.sh.h foldseek-10-941cd33> [ 36%] Linking CXX static library libtantan.a foldseek-10-941cd33> [ 36%] Built target tantan foldseek-10-941cd33> [ 36%] Built target ksw2 foldseek-10-941cd33> [ 36%] Built target local-generated foldseek-10-941cd33> [ 36%] Built target alp foldseek-10-941cd33> warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions) foldseek-10-941cd33> Finished `release` profile [optimized] target(s) in 9.25s foldseek-10-941cd33> Copying byproducts `libblock_aligner_c.a` to /build/source/build foldseek-10-941cd33> [ 36%] Built target _cargo-build_block_aligner_c foldseek-10-941cd33> [ 36%] Built target cargo-build_block_aligner_c foldseek-10-941cd33> [ 36%] Linking CXX static library libggml-base.a foldseek-10-941cd33> [ 36%] Built target ggml-base foldseek-10-941cd33> [ 36%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu.c.o foldseek-10-941cd33> [ 36%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-aarch64.cpp.o foldseek-10-941cd33> [ 36%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-hbm.cpp.o foldseek-10-941cd33> [ 36%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/amx/amx.cpp.o foldseek-10-941cd33> [ 36%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-quants.c.o foldseek-10-941cd33> [ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-traits.cpp.o foldseek-10-941cd33> [ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu.cpp.o foldseek-10-941cd33> [ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/amx/mmq.cpp.o foldseek-10-941cd33> [ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/llamafile/sgemm.cpp.o foldseek-10-941cd33> [ 38%] Built target generated foldseek-10-941cd33> [ 38%] Linking CXX static library libfoldcomp.a foldseek-10-941cd33> [ 38%] Built target foldcomp foldseek-10-941cd33> [ 38%] Building CXX object src/strucclustutils/CMakeFiles/gemmiwrapper.dir/GemmiWrapper.cpp.o foldseek-10-941cd33> [ 39%] Linking CXX static library libggml-cpu.a foldseek-10-941cd33> [ 39%] Built target ggml-cpu foldseek-10-941cd33> [ 39%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml.dir/ggml-backend-reg.cpp.o foldseek-10-941cd33> /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp: In function 'std::wstring utf8_to_utf16(const std::string&)': foldseek-10-941cd33> /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:76:10: warning: 'template class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations] foldseek-10-941cd33> 76 | std::wstring_convert> converter; foldseek-10-941cd33> | ^~~~~~~~~~~~~~~ foldseek-10-941cd33> In file included from /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/locale:47, foldseek-10-941cd33> from /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/bits/fs_path.h:36, foldseek-10-941cd33> from /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/filesystem:54, foldseek-10-941cd33> from /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:7: foldseek-10-941cd33> /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here foldseek-10-941cd33> 262 | class _GLIBCXX17_DEPRECATED wstring_convert foldseek-10-941cd33> | ^~~~~~~~~~~~~~~ foldseek-10-941cd33> /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp: In function 'std::string utf16_to_utf8(const std::wstring&)': foldseek-10-941cd33> /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:81:10: warning: 'template class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations] foldseek-10-941cd33> 81 | std::wstring_convert> converter; foldseek-10-941cd33> | ^~~~~~~~~~~~~~~ foldseek-10-941cd33> /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here foldseek-10-941cd33> 262 | class _GLIBCXX17_DEPRECATED wstring_convert foldseek-10-941cd33> | ^~~~~~~~~~~~~~~ foldseek-10-941cd33> [ 39%] Linking CXX static library libggml.a foldseek-10-941cd33> [ 39%] Built target ggml foldseek-10-941cd33> [ 40%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama.cpp.o foldseek-10-941cd33> [ 40%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-vocab.cpp.o foldseek-10-941cd33> [ 41%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-sampling.cpp.o foldseek-10-941cd33> [ 41%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/unicode.cpp.o foldseek-10-941cd33> [ 41%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/unicode-data.cpp.o foldseek-10-941cd33> [ 41%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-grammar.cpp.o foldseek-10-941cd33> [ 41%] Linking C static library libzstd.a foldseek-10-941cd33> /build/source/lib/prostt5/src/unicode.cpp: In function 'std::wstring unicode_wstring_from_utf8(const std::string&)': foldseek-10-941cd33> /build/source/lib/prostt5/src/unicode.cpp:210:10: warning: 'template class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations] foldseek-10-941cd33> 210 | std::wstring_convert> conv; foldseek-10-941cd33> | ^~~~~~~~~~~~~~~ foldseek-10-941cd33> In file included from /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/locale:47, foldseek-10-941cd33> from /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/regex:43, foldseek-10-941cd33> from /build/source/lib/prostt5/src/unicode.cpp:13: foldseek-10-941cd33> /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here foldseek-10-941cd33> 262 | class _GLIBCXX17_DEPRECATED wstring_convert foldseek-10-941cd33> | ^~~~~~~~~~~~~~~ foldseek-10-941cd33> [ 41%] Built target libzstd_static foldseek-10-941cd33> [ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o foldseek-10-941cd33> [ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o foldseek-10-941cd33> [ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o foldseek-10-941cd33> [ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o foldseek-10-941cd33> [ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o foldseek-10-941cd33> [ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o foldseek-10-941cd33> [ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o foldseek-10-941cd33> [ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o foldseek-10-941cd33> [ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o foldseek-10-941cd33> [ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o foldseek-10-941cd33> [ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o foldseek-10-941cd33> [ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o foldseek-10-941cd33> [ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o foldseek-10-941cd33> [ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o foldseek-10-941cd33> [ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o foldseek-10-941cd33> [ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o foldseek-10-941cd33> [ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o foldseek-10-941cd33> [ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o foldseek-10-941cd33> [ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o foldseek-10-941cd33> [ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o foldseek-10-941cd33> [ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o foldseek-10-941cd33> [ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o foldseek-10-941cd33> [ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o foldseek-10-941cd33> [ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o foldseek-10-941cd33> [ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o foldseek-10-941cd33> [ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o foldseek-10-941cd33> [ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o foldseek-10-941cd33> [ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o foldseek-10-941cd33> [ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o foldseek-10-941cd33> [ 49%] Building CXX object 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o foldseek-10-941cd33> [ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o foldseek-10-941cd33> [ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o foldseek-10-941cd33> [ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o foldseek-10-941cd33> [ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o foldseek-10-941cd33> [ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o foldseek-10-941cd33> [ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o foldseek-10-941cd33> [ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o foldseek-10-941cd33> /build/source/lib/mmseqs/src/util/result2flat.cpp: In function 'int result2flat(int, const char**, const Command&)': foldseek-10-941cd33> /build/source/lib/mmseqs/src/util/result2flat.cpp:65:37: warning: ignoring return value of 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator; size_type = long unsigned int]', declared with attribute 'nodiscard' [-Wunused-result] foldseek-10-941cd33> 65 | dbKeyBuffer.size(); foldseek-10-941cd33> | ~~~~~~~~~~~~~~~~^~ foldseek-10-941cd33> In file included from /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/string:56, foldseek-10-941cd33> from /build/source/lib/mmseqs/src/commons/Parameters.h:7, foldseek-10-941cd33> from /build/source/lib/mmseqs/src/util/result2flat.cpp:2: foldseek-10-941cd33> /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/bits/basic_string.h:1163:7: note: declared here foldseek-10-941cd33> 1163 | 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CXX object lib/tmalign/CMakeFiles/tmalign.dir/TMalign.cpp.o foldseek-10-941cd33> [ 90%] Building CXX object lib/tmalign/CMakeFiles/tmalign.dir/affineneedlemanwunsch.cpp.o foldseek-10-941cd33> [ 90%] Building CXX object lib/pulchra/CMakeFiles/pulchra.dir/pulchra.cpp.o foldseek-10-941cd33> [ 90%] Linking CXX static library libpulchra.a foldseek-10-941cd33> [ 90%] Built target pulchra foldseek-10-941cd33> [ 90%] Linking CXX static library lib3di.a foldseek-10-941cd33> [ 90%] Built target 3di foldseek-10-941cd33> [ 90%] Linking CXX static library libkerasify.a foldseek-10-941cd33> [ 90%] Built target kerasify foldseek-10-941cd33> [ 90%] Linking CXX static library libtmalign.a foldseek-10-941cd33> [ 90%] Built target tmalign foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/structcreatedb.cpp.o foldseek-10-941cd33> [ 95%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/structurealign.cpp.o foldseek-10-941cd33> [ 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object src/CMakeFiles/foldseek-framework.dir/workflow/StructureSearch.cpp.o foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/structurerescorediagonal.cpp.o foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/convert2pdb.cpp.o foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/makepaddeddb.cpp.o foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/scoremultimer.cpp.o foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/structureconvertalis.cpp.o foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/EasyStructureRbh.cpp.o foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/MultimerSearch.cpp.o foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/aln2tmscore.cpp.o foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/samplemulambda.cpp.o foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/tmalign.cpp.o foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/StructureCluster.cpp.o foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/commons/TMaligner.cpp.o foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/EasyStructureSearch.cpp.o foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/EasyMultimerSearch.cpp.o foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/expandmultimer.cpp.o foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/FoldseekBase.cpp.o foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/commons/StructureSmithWaterman.cpp.o foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/MultimerCluster.cpp.o foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/structureto3didescriptor.cpp.o foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/commons/LDDT.cpp.o foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/EvalueNeuralNet.cpp.o foldseek-10-941cd33> [ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/commons/LocalParameters.cpp.o foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/createstructsubdb.cpp.o foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/StructureRbh.cpp.o foldseek-10-941cd33> [100%] Linking CXX static library libfoldseek-framework.a foldseek-10-941cd33> [100%] Built target foldseek-framework foldseek-10-941cd33> [100%] Building CXX object src/CMakeFiles/foldseek.dir/foldseek.cpp.o foldseek-10-941cd33> [100%] Linking CXX executable foldseek foldseek-10-941cd33> [100%] Built target foldseek foldseek-10-941cd33> buildPhase completed in 2 minutes 3 seconds foldseek-10-941cd33> Running phase: installPhase foldseek-10-941cd33> install flags: -j48 SHELL=/nix/store/svx59425zxp552p2b8gm11qj5r09b56i-bash-5.3p15/bin/bash install foldseek-10-941cd33> [ 0%] Built target cargo-prebuild_block_aligner_c foldseek-10-941cd33> [ 1%] Built target version foldseek-10-941cd33> [ 2%] Built target microtar foldseek-10-941cd33> [ 3%] Built target tinyexpr foldseek-10-941cd33> [ 13%] Built target generated foldseek-10-941cd33> [ 18%] Built target local-generated foldseek-10-941cd33> [ 19%] Built target ksw2 foldseek-10-941cd33> [ 20%] Built target tantan foldseek-10-941cd33> [ 27%] Built target libzstd_static foldseek-10-941cd33> [ 29%] Built target ggml-base foldseek-10-941cd33> [ 32%] Built target foldcomp foldseek-10-941cd33> [ 36%] Built target alp foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:32:12 foldseek-10-941cd33> | foldseek-10-941cd33> 32 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> | foldseek-10-941cd33> = note: `#[warn(missing_abi)]` on by default foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:39:12 foldseek-10-941cd33> | foldseek-10-941cd33> 39 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:46:12 foldseek-10-941cd33> | foldseek-10-941cd33> 46 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:61:12 foldseek-10-941cd33> | foldseek-10-941cd33> 61 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:68:12 foldseek-10-941cd33> | foldseek-10-941cd33> 68 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:76:12 foldseek-10-941cd33> | foldseek-10-941cd33> 76 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:86:12 foldseek-10-941cd33> | foldseek-10-941cd33> 86 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:97:12 foldseek-10-941cd33> | foldseek-10-941cd33> 97 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:108:12 foldseek-10-941cd33> | foldseek-10-941cd33> 108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:119:12 foldseek-10-941cd33> | foldseek-10-941cd33> 119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:126:12 foldseek-10-941cd33> | foldseek-10-941cd33> 126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:133:12 foldseek-10-941cd33> | foldseek-10-941cd33> 133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:140:12 foldseek-10-941cd33> | foldseek-10-941cd33> 140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:149:12 foldseek-10-941cd33> | foldseek-10-941cd33> 149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:156:12 foldseek-10-941cd33> | foldseek-10-941cd33> 156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:163:12 foldseek-10-941cd33> | foldseek-10-941cd33> 163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:170:12 foldseek-10-941cd33> | foldseek-10-941cd33> 170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:179:12 foldseek-10-941cd33> | foldseek-10-941cd33> 179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:186:12 foldseek-10-941cd33> | foldseek-10-941cd33> 186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:194:12 foldseek-10-941cd33> | foldseek-10-941cd33> 194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:203:12 foldseek-10-941cd33> | foldseek-10-941cd33> 203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:210:12 foldseek-10-941cd33> | foldseek-10-941cd33> 210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:218:12 foldseek-10-941cd33> | foldseek-10-941cd33> 218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:237:20 foldseek-10-941cd33> | foldseek-10-941cd33> 237 | pub unsafe extern fn $new_name(query_len: usize, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:246:20 foldseek-10-941cd33> | foldseek-10-941cd33> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:259:20 foldseek-10-941cd33> | foldseek-10-941cd33> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:270:20 foldseek-10-941cd33> | foldseek-10-941cd33> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:288:20 foldseek-10-941cd33> | foldseek-10-941cd33> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:295:20 foldseek-10-941cd33> | foldseek-10-941cd33> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:302:20 foldseek-10-941cd33> | foldseek-10-941cd33> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:309:20 foldseek-10-941cd33> | foldseek-10-941cd33> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 315 | / gen_functions!( foldseek-10-941cd33> 316 | | block_new_aa, foldseek-10-941cd33> 317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 318 | | block_align_aa, foldseek-10-941cd33> ... | foldseek-10-941cd33> 332 | | AAMatrix, AAProfile, false, false foldseek-10-941cd33> 333 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:237:20 foldseek-10-941cd33> | foldseek-10-941cd33> 237 | pub unsafe extern fn $new_name(query_len: usize, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:246:20 foldseek-10-941cd33> | foldseek-10-941cd33> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:259:20 foldseek-10-941cd33> | foldseek-10-941cd33> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:270:20 foldseek-10-941cd33> | foldseek-10-941cd33> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:288:20 foldseek-10-941cd33> | foldseek-10-941cd33> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:295:20 foldseek-10-941cd33> | foldseek-10-941cd33> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:302:20 foldseek-10-941cd33> | foldseek-10-941cd33> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:309:20 foldseek-10-941cd33> | foldseek-10-941cd33> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 335 | / gen_functions!( foldseek-10-941cd33> 336 | | block_new_aa_xdrop, foldseek-10-941cd33> 337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).", foldseek-10-941cd33> 338 | | block_align_aa_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 352 | | AAMatrix, AAProfile, false, true foldseek-10-941cd33> 353 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:237:20 foldseek-10-941cd33> | foldseek-10-941cd33> 237 | pub unsafe extern fn $new_name(query_len: usize, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:246:20 foldseek-10-941cd33> | foldseek-10-941cd33> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:259:20 foldseek-10-941cd33> | foldseek-10-941cd33> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:270:20 foldseek-10-941cd33> | foldseek-10-941cd33> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:288:20 foldseek-10-941cd33> | foldseek-10-941cd33> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:295:20 foldseek-10-941cd33> | foldseek-10-941cd33> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:302:20 foldseek-10-941cd33> | foldseek-10-941cd33> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:309:20 foldseek-10-941cd33> | foldseek-10-941cd33> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 355 | / gen_functions!( foldseek-10-941cd33> 356 | | block_new_aa_trace, foldseek-10-941cd33> 357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 358 | | block_align_aa_trace, foldseek-10-941cd33> ... | foldseek-10-941cd33> 372 | | AAMatrix, AAProfile, true, false foldseek-10-941cd33> 373 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:237:20 foldseek-10-941cd33> | foldseek-10-941cd33> 237 | pub unsafe extern fn $new_name(query_len: usize, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:246:20 foldseek-10-941cd33> | foldseek-10-941cd33> 246 | pub unsafe extern fn $align_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:259:20 foldseek-10-941cd33> | foldseek-10-941cd33> 259 | pub unsafe extern fn $align_profile_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:270:20 foldseek-10-941cd33> | foldseek-10-941cd33> 270 | pub unsafe extern fn $align_3di_name(b: BlockHandle, foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:288:20 foldseek-10-941cd33> | foldseek-10-941cd33> 288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:295:20 foldseek-10-941cd33> | foldseek-10-941cd33> 295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:302:20 foldseek-10-941cd33> | foldseek-10-941cd33> 302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer... foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `extern` declarations without an explicit ABI are deprecated foldseek-10-941cd33> --> ../src/ffi.rs:309:20 foldseek-10-941cd33> | foldseek-10-941cd33> 309 | pub unsafe extern fn $free_name(b: BlockHandle) { foldseek-10-941cd33> | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"` foldseek-10-941cd33> ... foldseek-10-941cd33> 375 | / gen_functions!( foldseek-10-941cd33> 376 | | block_new_aa_trace_xdrop, foldseek-10-941cd33> 377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.", foldseek-10-941cd33> 378 | | block_align_aa_trace_xdrop, foldseek-10-941cd33> ... | foldseek-10-941cd33> 392 | | AAMatrix, AAProfile, true, true foldseek-10-941cd33> 393 | | ); foldseek-10-941cd33> | |_- in this macro invocation foldseek-10-941cd33> | foldseek-10-941cd33> = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info) foldseek-10-941cd33> foldseek-10-941cd33> warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions) foldseek-10-941cd33> Finished `release` profile [optimized] target(s) in 0.00s foldseek-10-941cd33> [ 37%] Built target gemmiwrapper foldseek-10-941cd33> [ 40%] Built target ggml-cpu foldseek-10-941cd33> Copying byproducts `libblock_aligner_c.a` to /build/source/build foldseek-10-941cd33> [ 40%] Built target ggml foldseek-10-941cd33> [ 40%] Built target _cargo-build_block_aligner_c foldseek-10-941cd33> [ 42%] Built target llama foldseek-10-941cd33> [ 42%] Built target cargo-build_block_aligner_c foldseek-10-941cd33> [ 43%] Built target prostt5 foldseek-10-941cd33> [ 89%] Built target mmseqs-framework foldseek-10-941cd33> [ 89%] Built target pulchra foldseek-10-941cd33> [ 89%] Built target kerasify foldseek-10-941cd33> [ 89%] Built target 3di foldseek-10-941cd33> [ 90%] Built target tmalign foldseek-10-941cd33> [100%] Built target foldseek-framework foldseek-10-941cd33> [100%] Built target foldseek foldseek-10-941cd33> Install the project... foldseek-10-941cd33> -- Install configuration: "Release" foldseek-10-941cd33> -- Installing: /nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/bin/foldseek foldseek-10-941cd33> Running phase: fixupPhase foldseek-10-941cd33> shrinking RPATHs of ELF executables and libraries in /nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33 foldseek-10-941cd33> shrinking /nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/bin/foldseek foldseek-10-941cd33> checking for references to /build/ in /nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33... foldseek-10-941cd33> patching script interpreter paths in /nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33 foldseek-10-941cd33> stripping (with command strip and flags -S -p) in /nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/bin post-build step Route build to niks3: ok Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org time=2026-09-21T21:18:55.026+09:00 level=INFO msg="Uploading 2 paths to niks3.sjanglab.org (23 already cached)" time=2026-09-21T21:18:55.026+09:00 level=INFO msg="Uploading kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33 (21.3MB)" time=2026-09-21T21:18:55.026+09:00 level=INFO msg="Uploading 3yd2lb2pcn2ir6w31wb0s3wc4fr8wvfk-openmp-21.1.8 (1.8MB)" time=2026-09-21T21:18:57.052+09:00 level=INFO msg="Uploading 2 narinfos" time=2026-09-21T21:18:57.997+09:00 level=INFO msg="Upload complete. (3.293s)"