foldseek-10-941cd33
checks.x86_64-linux.pkgs-foldseek
· build #79
· raw
1Using checkPhaseThreadLimitHook
unpackPhase
2unpacking source archive /nix/store/1g2298s2bz7py868im4h43k0v913xzgd-source3source root is sourcepatchPhase
4patching script interpreter paths in lib/mmseqs/cmake/xxdi.pl5lib/mmseqs/cmake/xxdi.pl: interpreter directive changed from "#!/usr/bin/env perl" to "/nix/store/w03i01kiakf4wz7jbp1l59c0bhb3pjca-perl-5.42.3/bin/perl"6patching script interpreter paths in cmake/xxdi.pl7find: 'cmake/xxdi.pl': No such file or directoryconfigurePhase
8cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/share/doc/foldseek -DCMAKE_INSTALL_INFODIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/share/man -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/include -DCMAKE_INSTALL_SBINDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/lib -DCMAKE_STRIP=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/strip -DCMAKE_RANLIB=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/ranlib -DCMAKE_AR=/nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/ar -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_INSTALL_PREFIX=/nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 -DHAVE_AVX2=19-- The C compiler identification is GNU 15.3.010-- The CXX compiler identification is GNU 15.3.011-- Detecting C compiler ABI info12-- Detecting C compiler ABI info - done13-- Check for working C compiler: /nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/gcc - skipped14-- Detecting C compile features15-- Detecting C compile features - done16-- Detecting CXX compiler ABI info17-- Detecting CXX compiler ABI info - done18-- Check for working CXX compiler: /nix/store/z4c6k0mrlkwl3s4w9ysxc8vq1wylm3ms-gcc-wrapper-15.3.0/bin/g++ - skipped19-- Detecting CXX compile features20-- Detecting CXX compile features - done21CMake Warning (deprecated) at lib/mmseqs/CMakeLists.txt:1 (cmake_minimum_required):22 Compatibility with CMake < 3.10 will be removed from a future version of23 CMake.2425 Update the VERSION argument <min> value. Or, use the <min>...<max> syntax26 to tell CMake that the project requires at least <min> but has been updated27 to work with policies introduced by <max> or earlier.28This warning is for project developers. Use -Wno-author or -Wno-deprecated29to suppress it.3031-- Source Directory: /build/source/lib/mmseqs32-- Project Directory: /build/source/lib/mmseqs33-- Compiler is GNU 34-- ZSTD VERSION 1.3.835CMake Warning (deprecated) at lib/mmseqs/lib/tinyexpr/CMakeLists.txt:1 (cmake_minimum_required):36 Compatibility with CMake < 3.10 will be removed from a future version of37 CMake.3839 Update the VERSION argument <min> value. Or, use the <min>...<max> syntax40 to tell CMake that the project requires at least <min> but has been updated41 to work with policies introduced by <max> or earlier.42This warning is for project developers. Use -Wno-author or -Wno-deprecated43to suppress it.4445-- xxd not found, using xxdi.pl instead46-- ShellCheck disabled47-- Performing Test HAVE_POSIX_FADVISE48-- Performing Test HAVE_POSIX_FADVISE - Success49-- Performing Test HAVE_POSIX_MADVISE50-- Performing Test HAVE_POSIX_MADVISE - Success51-- Performing Test ATOMIC_NATIVE52-- Performing Test ATOMIC_NATIVE - Failed53-- Performing Test ATOMIC_WITH_LIB54-- Performing Test ATOMIC_WITH_LIB - Success55-- Found Atomic: -latomic56-- IPS4O sorting works57-- Found ZLIB58-- Performing Test HAVE_ZLIB_CHECK59-- Performing Test HAVE_ZLIB_CHECK - Success60-- ZLIB works61-- Found BZLIB62-- Performing Test HAVE_BZLIB_CHECK63-- Performing Test HAVE_BZLIB_CHECK - Success64-- BZLIB works65-- Found OpenMP66CMake Warning (deprecated) at lib/foldcomp/CMakeLists.txt:2 (cmake_minimum_required):67 Compatibility with CMake < 3.10 will be removed from a future version of68 CMake.6970 Update the VERSION argument <min> value. Or, use the <min>...<max> syntax71 to tell CMake that the project requires at least <min> but has been updated72 to work with policies introduced by <max> or earlier.73This warning is for project developers. Use -Wno-author or -Wno-deprecated74to suppress it.7576-- xxd not found, using xxdi.pl instead77-- ShellCheck not found78-- Rust Target: x86_64-unknown-linux-gnu79-- Determining required link libraries for target x86_64-unknown-linux-gnu80-- Required static libs for target x86_64-unknown-linux-gnu: gcc_s;util;rt;pthread;m;dl;c81-- Found Rust: /nix/store/vy0xilifxb02fwal0wihsrwc8s69rlyk-rustc-wrapper-1.98.1/bin/rustc (found version "1.98.1")82-- Using Corrosion as a subdirectory83-- Rust Feature: simd_avx284-- Could NOT find Git (missing: GIT_EXECUTABLE) 85CMake Warning at lib/prostt5/cmake/build-info.cmake:14 (message):86 Git not found. Build info will not be accurate.87Call Stack (most recent call first):88 lib/prostt5/CMakeLists.txt:82 (include)899091-- Performing Test CMAKE_HAVE_LIBC_PTHREAD92-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success93-- Found Threads: TRUE94-- Warning: ccache not found - consider installing it for faster compilation or disable this warning with GGML_CCACHE=OFF95-- CMAKE_SYSTEM_PROCESSOR: x86_6496-- Including CPU backend97-- x86 detected98-- Adding CPU backend variant ggml-cpu: -msse2;-msse3;-mssse3;-msse4.1;-mf16c;-mfma;-mavx;-mavx2 GGML_SSE41;GGML_F16C;GGML_FMA;GGML_AVX;GGML_AVX299-- Configuring done (3.5s)100-- Generating done (0.3s)101CMake Warning (unused-cli):102 Manually-specified variables were not used by the project:103104 BUILD_TESTING105 CMAKE_EXPORT_NO_PACKAGE_REGISTRY106107108-- Build files have been written to: /build/source/build109cmake: enabled parallel building110cmake: enabled parallel installingbuildPhase
111build flags: -j48 SHELL=/nix/store/svx59425zxp552p2b8gm11qj5r09b56i-bash-5.3p15/bin/bash112[ 0%] Building CXX object lib/mmseqs/lib/tantan/CMakeFiles/tantan.dir/tantan.cpp.o113[ 0%] Building C object lib/mmseqs/lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o114[ 0%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o115[ 0%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/entropy_common.c.o116[ 1%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o117[ 2%] Building CXX object lib/mmseqs/lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o118[ 2%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/error_private.c.o119[ 2%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o120[ 3%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/threading.c.o121[ 3%] 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Generating ../generated/easysearch.sh.h192[ 22%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress.c.o193[ 22%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o194[ 23%] Generating ../generated/easycluster.sh.h195/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base':196/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]197 373 | ret->bound = s->bound;198 | ^~199In function 'new_expr',200 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:372:19:201/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'202 88 | te_expr *ret = malloc(size);203 | ^~~~~~~~~~~~204In function 'new_expr',205 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19:206/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]207 93 | ret->type = type;208 | ~~~~~~~~~~^~~~~~209/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'210 88 | te_expr *ret = malloc(size);211 | ^~~~~~~~~~~~212/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base':213/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]214 367 | ret->value = s->value;215 | ^~216In function 'new_expr',217 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19:218/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'219 88 | te_expr *ret = malloc(size);220 | ^~~~~~~~~~~~221/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base':222/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]223 446 | ret->value = NAN;224 | ^~225In function 'new_expr',226 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:444:19:227/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'228 88 | te_expr *ret = malloc(size);229 | ^~~~~~~~~~~~230[ 23%] Generating ../generated/easytaxonomy.sh.h231[ 23%] Generating ../generated/vendor.js.zst.h232[ 23%] Generating ../generated/easyrbh.sh.h233[ 23%] Generating ../generated/blastp.sh.h234[ 23%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/torsion_angle.cpp.o235[ 23%] Linking C static library libmicrotar.a236[ 23%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress_block.c.o237[ 23%] Built target microtar238[ 23%] Generating ../generated/makepaddeddb.sh.h239[ 23%] Generating ../generated/blastpgp.sh.h240[ 23%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_ddict.c.o241[ 24%] Generating ../generated/result2structprofile.sh.h242[ 25%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/utility.cpp.o243[ 25%] Generating ../generated/map.sh.h244[ 26%] Generating ../generated/createstructsubdb.sh.h245[ 27%] Generating ../generated/rbh.sh.h246[ 28%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/cover.c.o247[ 29%] Generating ../generated/linclust.sh.h248[ 29%] Generating ../generated/multimersearch.sh.h249[ 29%] Generating ../generated/clustering.sh.h250[ 29%] Generating ../generated/cascaded_clustering.sh.h251[ 29%] Generating ../generated/easymultimersearch.sh.h252[ 30%] Generating ../generated/update_clustering.sh.h253[ 30%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/fastcover.c.o254[ 30%] Generating ../generated/multimercluster.sh.h255[ 30%] Generating ../generated/searchtargetprofile.sh.h256[ 30%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/divsufsort.c.o257[ 30%] Linking C static library libtinyexpr.a258warning: `extern` declarations without an explicit ABI are deprecated259 --> ../src/ffi.rs:32:12260 |26132 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix {262 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`263 |264 = note: `#[warn(missing_abi)]` on by default265266warning: `extern` declarations without an explicit ABI are deprecated267 --> ../src/ffi.rs:39:12268 |26939 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) {270 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`271272warning: `extern` declarations without an explicit ABI are deprecated273 --> ../src/ffi.rs:46:12274 |27546 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) {276 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`277278warning: `extern` declarations without an explicit ABI are deprecated279 --> ../src/ffi.rs:61:12280 |28161 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile {282 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`283284warning: `extern` declarations without an explicit ABI are deprecated285 --> ../src/ffi.rs:68:12286 |28768 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize {288 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`289290warning: `extern` declarations without an explicit ABI are deprecated291 --> ../src/ffi.rs:76:12292 |29376 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) {294 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`295296warning: `extern` declarations without an explicit ABI are deprecated297 --> ../src/ffi.rs:86:12298 |29986 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) {300 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`301302warning: `extern` declarations without an explicit ABI are deprecated303 --> ../src/ffi.rs:97:12304 |30597 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {306 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`307308warning: `extern` declarations without an explicit ABI are deprecated309 --> ../src/ffi.rs:108:12310 |311108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {312 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`313314warning: `extern` declarations without an explicit ABI are deprecated315 --> ../src/ffi.rs:119:12316 |317119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {318 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`319320warning: `extern` declarations without an explicit ABI are deprecated321 --> ../src/ffi.rs:126:12322 |323126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 {324 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`325326warning: `extern` declarations without an explicit ABI are deprecated327 --> ../src/ffi.rs:133:12328 |329133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 {330 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`331332warning: `extern` declarations without an explicit ABI are deprecated333 --> ../src/ffi.rs:140:12334 |335140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) {336 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`337338warning: `extern` declarations without an explicit ABI are deprecated339 --> ../src/ffi.rs:149:12340 |341149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar {342 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`343344warning: `extern` declarations without an explicit ABI are deprecated345 --> ../src/ffi.rs:156:12346 |347156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen {348 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`349350warning: `extern` declarations without an explicit ABI are deprecated351 --> ../src/ffi.rs:163:12352 |353163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize {354 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`355356warning: `extern` declarations without an explicit ABI are deprecated357 --> ../src/ffi.rs:170:12358 |359170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) {360 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`361362warning: `extern` declarations without an explicit ABI are deprecated363 --> ../src/ffi.rs:179:12364 |365179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes {366 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`367368warning: `extern` declarations without an explicit ABI are deprecated369 --> ../src/ffi.rs:186:12370 |371186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) {372 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`373374warning: `extern` declarations without an explicit ABI are deprecated375 --> ../src/ffi.rs:194:12376 |377194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) {378 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`379380warning: `extern` declarations without an explicit ABI are deprecated381 --> ../src/ffi.rs:203:12382 |383203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias {384 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`385386warning: `extern` declarations without an explicit ABI are deprecated387 --> ../src/ffi.rs:210:12388 |389210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) {390 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`391392warning: `extern` declarations without an explicit ABI are deprecated393 --> ../src/ffi.rs:218:12394 |395218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) {396 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`397398warning: `extern` declarations without an explicit ABI are deprecated399 --> ../src/ffi.rs:237:20400 |401237 | pub unsafe extern fn $new_name(query_len: usize,402 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`403...404315 | / gen_functions!(405316 | | block_new_aa,406317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",407318 | | block_align_aa,408... |409332 | | AAMatrix, AAProfile, false, false410333 | | );411 | |_- in this macro invocation412 |413 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)414415warning: `extern` declarations without an explicit ABI are deprecated416 --> ../src/ffi.rs:246:20417 |418246 | pub unsafe extern fn $align_name(b: BlockHandle,419 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`420...421315 | / gen_functions!(422316 | | block_new_aa,423317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",424318 | | block_align_aa,425... |426332 | | AAMatrix, AAProfile, false, false427333 | | );428 | |_- in this macro invocation429 |430 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)431432warning: `extern` declarations without an explicit ABI are deprecated433 --> ../src/ffi.rs:259:20434 |435259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,436 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`437...438315 | / gen_functions!(439316 | | block_new_aa,440317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",441318 | | block_align_aa,442... |443332 | | AAMatrix, AAProfile, false, false444333 | | );445 | |_- in this macro invocation446 |447 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)448449warning: `extern` declarations without an explicit ABI are deprecated450 --> ../src/ffi.rs:270:20451 |452270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,453 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`454...455315 | / gen_functions!(456316 | | block_new_aa,457317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",458318 | | block_align_aa,459... |460332 | | AAMatrix, AAProfile, false, false461333 | | );462 | |_- in this macro invocation463 |464 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)465466warning: `extern` declarations without an explicit ABI are deprecated467 --> ../src/ffi.rs:288:20468 |469288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {470 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`471...472315 | / gen_functions!(473316 | | block_new_aa,474317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",475318 | | block_align_aa,476... |477332 | | AAMatrix, AAProfile, false, false478333 | | );479 | |_- in this macro invocation480 |481 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)482483warning: `extern` declarations without an explicit ABI are deprecated484 --> ../src/ffi.rs:295:20485 |486295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {487 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`488...489315 | / gen_functions!(490316 | | block_new_aa,491317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",492318 | | block_align_aa,493... |494332 | | AAMatrix, AAProfile, false, false495333 | | );496 | |_- in this macro invocation497 |498 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)499500warning: `extern` declarations without an explicit ABI are deprecated501 --> ../src/ffi.rs:302:20502 |503302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...504 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`505...506315 | / gen_functions!(507316 | | block_new_aa,508317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",509318 | | block_align_aa,510... |511332 | | AAMatrix, AAProfile, false, false512333 | | );513 | |_- in this macro invocation514 |515 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)516517warning: `extern` declarations without an explicit ABI are deprecated518 --> ../src/ffi.rs:309:20519 |520309 | pub unsafe extern fn $free_name(b: BlockHandle) {521 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`522...523315 | / gen_functions!(524316 | | block_new_aa,525317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",526318 | | block_align_aa,527... |528332 | | AAMatrix, AAProfile, false, false529333 | | );530 | |_- in this macro invocation531 |532 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)533534warning: `extern` declarations without an explicit ABI are deprecated535 --> ../src/ffi.rs:237:20536 |537237 | pub unsafe extern fn $new_name(query_len: usize,538 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`539...540335 | / gen_functions!(541336 | | block_new_aa_xdrop,542337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",543338 | | block_align_aa_xdrop,544... |545352 | | AAMatrix, AAProfile, false, true546353 | | );547 | |_- in this macro invocation548 |549 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)550551warning: `extern` declarations without an explicit ABI are deprecated552 --> ../src/ffi.rs:246:20553 |554246 | pub unsafe extern fn $align_name(b: BlockHandle,555 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`556...557335 | / gen_functions!(558336 | | block_new_aa_xdrop,559337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",560338 | | block_align_aa_xdrop,561... |562352 | | AAMatrix, AAProfile, false, true563353 | | );564 | |_- in this macro invocation565 |566 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)567568warning: `extern` declarations without an explicit ABI are deprecated569 --> ../src/ffi.rs:259:20570 |571259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,572 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`573...574335 | / gen_functions!(575336 | | block_new_aa_xdrop,576337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",577338 | | block_align_aa_xdrop,578... |579352 | | AAMatrix, AAProfile, false, true580353 | | );581 | |_- in this macro invocation582 |583 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)584585warning: `extern` declarations without an explicit ABI are deprecated586 --> ../src/ffi.rs:270:20587 |588270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,589 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`590...591335 | / gen_functions!(592336 | | block_new_aa_xdrop,593337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",594338 | | block_align_aa_xdrop,595... |596352 | | AAMatrix, AAProfile, false, true597353 | | );598 | |_- in this macro invocation599 |600 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)601602warning: `extern` declarations without an explicit ABI are deprecated603 --> ../src/ffi.rs:288:20604 |605288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {606 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`607...608335 | / gen_functions!(609336 | | block_new_aa_xdrop,610337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",611338 | | block_align_aa_xdrop,612... |613352 | | AAMatrix, AAProfile, false, true614353 | | );615 | |_- in this macro invocation616 |617 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)618619warning: `extern` declarations without an explicit ABI are deprecated620 --> ../src/ffi.rs:295:20621 |622295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {623 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`624...625335 | / gen_functions!(626336 | | block_new_aa_xdrop,627337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",628338 | | block_align_aa_xdrop,629... |630352 | | AAMatrix, AAProfile, false, true631353 | | );632 | |_- in this macro invocation633 |634 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)635636warning: `extern` declarations without an explicit ABI are deprecated637 --> ../src/ffi.rs:302:20638 |639302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...640 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`641...642335 | / gen_functions!(643336 | | block_new_aa_xdrop,644337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",645338 | | block_align_aa_xdrop,646... |647352 | | AAMatrix, AAProfile, false, true648353 | | );649 | |_- in this macro invocation650 |651 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)652653warning: `extern` declarations without an explicit ABI are deprecated654 --> ../src/ffi.rs:309:20655 |656309 | pub unsafe extern fn $free_name(b: BlockHandle) {657 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`658...659335 | / gen_functions!(660336 | | block_new_aa_xdrop,661337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",662338 | | block_align_aa_xdrop,663... |664352 | | AAMatrix, AAProfile, false, true665353 | | );666 | |_- in this macro invocation667 |668 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)669670warning: `extern` declarations without an explicit ABI are deprecated671 --> ../src/ffi.rs:237:20672 |673237 | pub unsafe extern fn $new_name(query_len: usize,674 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`675...676355 | / gen_functions!(677356 | | block_new_aa_trace,678357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",679358 | | block_align_aa_trace,680... |681372 | | AAMatrix, AAProfile, true, false682373 | | );683 | |_- in this macro invocation684 |685 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)686687warning: `extern` declarations without an explicit ABI are deprecated688 --> ../src/ffi.rs:246:20689 |690246 | pub unsafe extern fn $align_name(b: BlockHandle,691 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`692...693355 | / gen_functions!(694356 | | block_new_aa_trace,695357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",696358 | | block_align_aa_trace,697... |698372 | | AAMatrix, AAProfile, true, false699373 | | );700 | |_- in this macro invocation701 |702 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)703704warning: `extern` declarations without an explicit ABI are deprecated705 --> ../src/ffi.rs:259:20706 |707259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,708 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`709...710355 | / gen_functions!(711356 | | block_new_aa_trace,712357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",713358 | | block_align_aa_trace,714... |715372 | | AAMatrix, AAProfile, true, false716373 | | );717 | |_- in this macro invocation718 |719 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)720721warning: `extern` declarations without an explicit ABI are deprecated722 --> ../src/ffi.rs:270:20723 |724270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,725 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`726...727355 | / gen_functions!(728356 | | block_new_aa_trace,729357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",730358 | | block_align_aa_trace,731... |732372 | | AAMatrix, AAProfile, true, false733373 | | );734 | |_- in this macro invocation735 |736 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)737738warning: `extern` declarations without an explicit ABI are deprecated739 --> ../src/ffi.rs:288:20740 |741288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {742 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`743...744355 | / gen_functions!(745356 | | block_new_aa_trace,746357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",747358 | | block_align_aa_trace,748... |749372 | | AAMatrix, AAProfile, true, false750373 | | );751 | |_- in this macro invocation752 |753 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)754755warning: `extern` declarations without an explicit ABI are deprecated756 --> ../src/ffi.rs:295:20757 |758295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {759 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`760...761355 | / gen_functions!(762356 | | block_new_aa_trace,763357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",764358 | | block_align_aa_trace,765... |766372 | | AAMatrix, AAProfile, true, false767373 | | );768 | |_- in this macro invocation769 |770 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)771772warning: `extern` declarations without an explicit ABI are deprecated773 --> ../src/ffi.rs:302:20774 |775302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...776 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`777...778355 | / gen_functions!(779356 | | block_new_aa_trace,780357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",781358 | | block_align_aa_trace,782... |783372 | | AAMatrix, AAProfile, true, false784373 | | );785 | |_- in this macro invocation786 |787 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)788789warning: `extern` declarations without an explicit ABI are deprecated790 --> ../src/ffi.rs:309:20791 |792309 | pub unsafe extern fn $free_name(b: BlockHandle) {793 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`794...795355 | / gen_functions!(796356 | | block_new_aa_trace,797357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",798358 | | block_align_aa_trace,799... |800372 | | AAMatrix, AAProfile, true, false801373 | | );802 | |_- in this macro invocation803 |804 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)805806warning: `extern` declarations without an explicit ABI are deprecated807 --> ../src/ffi.rs:237:20808 |809237 | pub unsafe extern fn $new_name(query_len: usize,810 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`811...812375 | / gen_functions!(813376 | | block_new_aa_trace_xdrop,814377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",815378 | | block_align_aa_trace_xdrop,816... |817392 | | AAMatrix, AAProfile, true, true818393 | | );819 | |_- in this macro invocation820 |821 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)822823warning: `extern` declarations without an explicit ABI are deprecated824 --> ../src/ffi.rs:246:20825 |826246 | pub unsafe extern fn $align_name(b: BlockHandle,827 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`828...829375 | / gen_functions!(830376 | | block_new_aa_trace_xdrop,831377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",832378 | | block_align_aa_trace_xdrop,833... |834392 | | AAMatrix, AAProfile, true, true835393 | | );836 | |_- in this macro invocation837 |838 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)839840warning: `extern` declarations without an explicit ABI are deprecated841 --> ../src/ffi.rs:259:20842 |843259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,844 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`845...846375 | / gen_functions!(847376 | | block_new_aa_trace_xdrop,848377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",849378 | | block_align_aa_trace_xdrop,850... |851392 | | AAMatrix, AAProfile, true, true852393 | | );853 | |_- in this macro invocation854 |855 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)856857warning: `extern` declarations without an explicit ABI are deprecated858 --> ../src/ffi.rs:270:20859 |860270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,861 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`862...863375 | / gen_functions!(864376 | | block_new_aa_trace_xdrop,865377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",866378 | | block_align_aa_trace_xdrop,867... |868392 | | AAMatrix, AAProfile, true, true869393 | | );870 | |_- in this macro invocation871 |872 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)873874warning: `extern` declarations without an explicit ABI are deprecated875 --> ../src/ffi.rs:288:20876 |877288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {878 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`879...880375 | / gen_functions!(881376 | | block_new_aa_trace_xdrop,882377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",883378 | | block_align_aa_trace_xdrop,884... |885392 | | AAMatrix, AAProfile, true, true886393 | | );887 | |_- in this macro invocation888 |889 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)890891warning: `extern` declarations without an explicit ABI are deprecated892 --> ../src/ffi.rs:295:20893 |894295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {895 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`896...897375 | / gen_functions!(898376 | | block_new_aa_trace_xdrop,899377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",900378 | | block_align_aa_trace_xdrop,901... |902392 | | AAMatrix, AAProfile, true, true903393 | | );904 | |_- in this macro invocation905 |906 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)907908warning: `extern` declarations without an explicit ABI are deprecated909 --> ../src/ffi.rs:302:20910 |911302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...912 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`913...914375 | / gen_functions!(915376 | | block_new_aa_trace_xdrop,916377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",917378 | | block_align_aa_trace_xdrop,918... |919392 | | AAMatrix, AAProfile, true, true920393 | | );921 | |_- in this macro invocation922 |923 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)924925warning: `extern` declarations without an explicit ABI are deprecated926 --> ../src/ffi.rs:309:20927 |928309 | pub unsafe extern fn $free_name(b: BlockHandle) {929 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`930...931375 | / gen_functions!(932376 | | block_new_aa_trace_xdrop,933377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",934378 | | block_align_aa_trace_xdrop,935... |936392 | | AAMatrix, AAProfile, true, true937393 | | );938 | |_- in this macro invocation939 |940 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)941942[ 30%] Generating ../generated/easymultimercluster.sh.h943[ 31%] Generating ../generated/createindex.sh.h944[ 31%] Generating ../generated/createtaxdb.sh.h945[ 31%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/zdict.c.o946[ 31%] Generating ../generated/translated_search.sh.h947[ 31%] Built target tinyexpr948[ 31%] Generating ../generated/taxpercontig.sh.h949[ 33%] Generating ../generated/multihitsearch.sh.h950[ 33%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_common.c.o951[ 33%] Generating ../generated/multihitdb.sh.h952[ 34%] Generating ../generated/enrich.sh.h953[ 34%] Generating ../generated/blastn.sh.h954[ 34%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_compress.c.o955[ 34%] Generating ../generated/searchslicedtargetprofile.sh.h956[ 35%] Generating ../generated/taxonomy.sh.h957[ 35%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_decompress.c.o958[ 35%] Generating ../generated/linsearch.sh.h959[ 35%] Generating ../generated/databases.sh.h960[ 35%] Generating ../generated/nucleotide_clustering.sh.h961[ 35%] Generating ../generated/tsv2exprofiledb.sh.h962[ 35%] Generating ../generated/iterativepp.sh.h963[ 36%] Linking CXX static library libtantan.a964[ 36%] Built target tantan965[ 36%] Built target ksw2966[ 36%] Built target local-generated967[ 36%] Built target alp968warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions)969 Finished `release` profile [optimized] target(s) in 9.25s970Copying byproducts `libblock_aligner_c.a` to /build/source/build971[ 36%] Built target _cargo-build_block_aligner_c972[ 36%] Built target cargo-build_block_aligner_c973[ 36%] Linking CXX static library libggml-base.a974[ 36%] Built target ggml-base975[ 36%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu.c.o976[ 36%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-aarch64.cpp.o977[ 36%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-hbm.cpp.o978[ 36%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/amx/amx.cpp.o979[ 36%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-quants.c.o980[ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-traits.cpp.o981[ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu.cpp.o982[ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/amx/mmq.cpp.o983[ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/llamafile/sgemm.cpp.o984[ 38%] Built target generated985[ 38%] Linking CXX static library libfoldcomp.a986[ 38%] Built target foldcomp987[ 38%] Building CXX object src/strucclustutils/CMakeFiles/gemmiwrapper.dir/GemmiWrapper.cpp.o988[ 39%] Linking CXX static library libggml-cpu.a989[ 39%] Built target ggml-cpu990[ 39%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml.dir/ggml-backend-reg.cpp.o991/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp: In function 'std::wstring utf8_to_utf16(const std::string&)':992/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:76:10: warning: 'template<class _Codecvt, class _Elem, class _Wide_alloc, class _Byte_alloc> class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations]993 76 | std::wstring_convert<std::codecvt_utf8_utf16<wchar_t>> converter;994 | ^~~~~~~~~~~~~~~995In file included from /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/locale:47,996 from /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/bits/fs_path.h:36,997 from /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/filesystem:54,998 from /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:7:999/nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here1000 262 | class _GLIBCXX17_DEPRECATED wstring_convert1001 | ^~~~~~~~~~~~~~~1002/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp: In function 'std::string utf16_to_utf8(const std::wstring&)':1003/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:81:10: warning: 'template<class _Codecvt, class _Elem, class _Wide_alloc, class _Byte_alloc> class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations]1004 81 | std::wstring_convert<std::codecvt_utf8_utf16<wchar_t>> converter;1005 | ^~~~~~~~~~~~~~~1006/nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here1007 262 | class _GLIBCXX17_DEPRECATED wstring_convert1008 | ^~~~~~~~~~~~~~~1009[ 39%] Linking CXX static library libggml.a1010[ 39%] Built target ggml1011[ 40%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama.cpp.o1012[ 40%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-vocab.cpp.o1013[ 41%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-sampling.cpp.o1014[ 41%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/unicode.cpp.o1015[ 41%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/unicode-data.cpp.o1016[ 41%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-grammar.cpp.o1017[ 41%] Linking C static library libzstd.a1018/build/source/lib/prostt5/src/unicode.cpp: In function 'std::wstring unicode_wstring_from_utf8(const std::string&)':1019/build/source/lib/prostt5/src/unicode.cpp:210:10: warning: 'template<class _Codecvt, class _Elem, class _Wide_alloc, class _Byte_alloc> class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations]1020 210 | std::wstring_convert<std::codecvt_utf8<wchar_t>> conv;1021 | ^~~~~~~~~~~~~~~1022In file included from /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/locale:47,1023 from /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/regex:43,1024 from /build/source/lib/prostt5/src/unicode.cpp:13:1025/nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here1026 262 | class _GLIBCXX17_DEPRECATED wstring_convert1027 | ^~~~~~~~~~~~~~~1028[ 41%] Built target libzstd_static1029[ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o1030[ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o1031[ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o1032[ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o1033[ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o1034[ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o1035[ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o1036[ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o1037[ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o1038[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o1039[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o1040[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o1041[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o1042[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o1043[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o1044[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o1045[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o1046[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o1047[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o1048[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o1049[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o1050[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o1051[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o1052[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o1053[ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o1054[ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o1055[ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o1056[ 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Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o1162/build/source/lib/mmseqs/src/util/result2flat.cpp: In function 'int result2flat(int, const char**, const Command&)':1163/build/source/lib/mmseqs/src/util/result2flat.cpp:65:37: warning: ignoring return value of 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>; size_type = long unsigned int]', declared with attribute 'nodiscard' [-Wunused-result]1164 65 | dbKeyBuffer.size();1165 | ~~~~~~~~~~~~~~~~^~1166In file included from /nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/string:56,1167 from /build/source/lib/mmseqs/src/commons/Parameters.h:7,1168 from /build/source/lib/mmseqs/src/util/result2flat.cpp:2:1169/nix/store/8sjgd7q3mdks1rb7rbcv0sallhvrhai5-gcc-15.3.0/include/c++/15.3.0/bits/basic_string.h:1163:7: 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1276install flags: -j48 SHELL=/nix/store/svx59425zxp552p2b8gm11qj5r09b56i-bash-5.3p15/bin/bash install1277[ 0%] Built target cargo-prebuild_block_aligner_c1278[ 1%] Built target version1279[ 2%] Built target microtar1280[ 3%] Built target tinyexpr1281[ 13%] Built target generated1282[ 18%] Built target local-generated1283[ 19%] Built target ksw21284[ 20%] Built target tantan1285[ 27%] Built target libzstd_static1286[ 29%] Built target ggml-base1287[ 32%] Built target foldcomp1288[ 36%] Built target alp1289warning: `extern` declarations without an explicit ABI are deprecated1290 --> ../src/ffi.rs:32:121291 |129232 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix {1293 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1294 |1295 = note: `#[warn(missing_abi)]` on by default12961297warning: `extern` declarations without an explicit ABI are deprecated1298 --> ../src/ffi.rs:39:121299 |130039 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) {1301 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13021303warning: `extern` declarations without an explicit ABI are deprecated1304 --> ../src/ffi.rs:46:121305 |130646 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) {1307 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13081309warning: `extern` declarations without an explicit ABI are deprecated1310 --> ../src/ffi.rs:61:121311 |131261 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile {1313 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13141315warning: `extern` declarations without an explicit ABI are deprecated1316 --> ../src/ffi.rs:68:121317 |131868 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize {1319 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13201321warning: `extern` declarations without an explicit ABI are deprecated1322 --> ../src/ffi.rs:76:121323 |132476 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) {1325 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13261327warning: `extern` declarations without an explicit ABI are deprecated1328 --> ../src/ffi.rs:86:121329 |133086 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) {1331 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13321333warning: `extern` declarations without an explicit ABI are deprecated1334 --> ../src/ffi.rs:97:121335 |133697 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {1337 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13381339warning: `extern` declarations without an explicit ABI are deprecated1340 --> ../src/ffi.rs:108:121341 |1342108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {1343 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13441345warning: `extern` declarations without an explicit ABI are deprecated1346 --> ../src/ffi.rs:119:121347 |1348119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {1349 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13501351warning: `extern` declarations without an explicit ABI are deprecated1352 --> ../src/ffi.rs:126:121353 |1354126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 {1355 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13561357warning: `extern` declarations without an explicit ABI are deprecated1358 --> ../src/ffi.rs:133:121359 |1360133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 {1361 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13621363warning: `extern` declarations without an explicit ABI are deprecated1364 --> ../src/ffi.rs:140:121365 |1366140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) {1367 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13681369warning: `extern` declarations without an explicit ABI are deprecated1370 --> ../src/ffi.rs:149:121371 |1372149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar {1373 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13741375warning: `extern` declarations without an explicit ABI are deprecated1376 --> ../src/ffi.rs:156:121377 |1378156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen {1379 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13801381warning: `extern` declarations without an explicit ABI are deprecated1382 --> ../src/ffi.rs:163:121383 |1384163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize {1385 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13861387warning: `extern` declarations without an explicit ABI are deprecated1388 --> ../src/ffi.rs:170:121389 |1390170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) {1391 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13921393warning: `extern` declarations without an explicit ABI are deprecated1394 --> ../src/ffi.rs:179:121395 |1396179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes {1397 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13981399warning: `extern` declarations without an explicit ABI are deprecated1400 --> ../src/ffi.rs:186:121401 |1402186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) {1403 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14041405warning: `extern` declarations without an explicit ABI are deprecated1406 --> ../src/ffi.rs:194:121407 |1408194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) {1409 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14101411warning: `extern` declarations without an explicit ABI are deprecated1412 --> ../src/ffi.rs:203:121413 |1414203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias {1415 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14161417warning: `extern` declarations without an explicit ABI are deprecated1418 --> ../src/ffi.rs:210:121419 |1420210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) {1421 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14221423warning: `extern` declarations without an explicit ABI are deprecated1424 --> ../src/ffi.rs:218:121425 |1426218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) {1427 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14281429warning: `extern` declarations without an explicit ABI are deprecated1430 --> ../src/ffi.rs:237:201431 |1432237 | pub unsafe extern fn $new_name(query_len: usize,1433 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1434...1435315 | / gen_functions!(1436316 | | block_new_aa,1437317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1438318 | | block_align_aa,1439... |1440332 | | AAMatrix, AAProfile, false, false1441333 | | );1442 | |_- in this macro invocation1443 |1444 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)14451446warning: `extern` declarations without an explicit ABI are deprecated1447 --> ../src/ffi.rs:246:201448 |1449246 | pub unsafe extern fn $align_name(b: BlockHandle,1450 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1451...1452315 | / gen_functions!(1453316 | | block_new_aa,1454317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1455318 | | block_align_aa,1456... |1457332 | | AAMatrix, AAProfile, false, false1458333 | | );1459 | |_- in this macro invocation1460 |1461 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)14621463warning: `extern` declarations without an explicit ABI are deprecated1464 --> ../src/ffi.rs:259:201465 |1466259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1467 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1468...1469315 | / gen_functions!(1470316 | | block_new_aa,1471317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1472318 | | block_align_aa,1473... |1474332 | | AAMatrix, AAProfile, false, false1475333 | | );1476 | |_- in this macro invocation1477 |1478 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)14791480warning: `extern` declarations without an explicit ABI are deprecated1481 --> ../src/ffi.rs:270:201482 |1483270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1484 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1485...1486315 | / gen_functions!(1487316 | | block_new_aa,1488317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1489318 | | block_align_aa,1490... |1491332 | | AAMatrix, AAProfile, false, false1492333 | | );1493 | |_- in this macro invocation1494 |1495 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)14961497warning: `extern` declarations without an explicit ABI are deprecated1498 --> ../src/ffi.rs:288:201499 |1500288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1501 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1502...1503315 | / gen_functions!(1504316 | | block_new_aa,1505317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1506318 | | block_align_aa,1507... |1508332 | | AAMatrix, AAProfile, false, false1509333 | | );1510 | |_- in this macro invocation1511 |1512 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15131514warning: `extern` declarations without an explicit ABI are deprecated1515 --> ../src/ffi.rs:295:201516 |1517295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1518 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1519...1520315 | / gen_functions!(1521316 | | block_new_aa,1522317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1523318 | | block_align_aa,1524... |1525332 | | AAMatrix, AAProfile, false, false1526333 | | );1527 | |_- in this macro invocation1528 |1529 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15301531warning: `extern` declarations without an explicit ABI are deprecated1532 --> ../src/ffi.rs:302:201533 |1534302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1535 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1536...1537315 | / gen_functions!(1538316 | | block_new_aa,1539317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1540318 | | block_align_aa,1541... |1542332 | | AAMatrix, AAProfile, false, false1543333 | | );1544 | |_- in this macro invocation1545 |1546 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15471548warning: `extern` declarations without an explicit ABI are deprecated1549 --> ../src/ffi.rs:309:201550 |1551309 | pub unsafe extern fn $free_name(b: BlockHandle) {1552 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1553...1554315 | / gen_functions!(1555316 | | block_new_aa,1556317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1557318 | | block_align_aa,1558... |1559332 | | AAMatrix, AAProfile, false, false1560333 | | );1561 | |_- in this macro invocation1562 |1563 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15641565warning: `extern` declarations without an explicit ABI are deprecated1566 --> ../src/ffi.rs:237:201567 |1568237 | pub unsafe extern fn $new_name(query_len: usize,1569 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1570...1571335 | / gen_functions!(1572336 | | block_new_aa_xdrop,1573337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1574338 | | block_align_aa_xdrop,1575... |1576352 | | AAMatrix, AAProfile, false, true1577353 | | );1578 | |_- in this macro invocation1579 |1580 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15811582warning: `extern` declarations without an explicit ABI are deprecated1583 --> ../src/ffi.rs:246:201584 |1585246 | pub unsafe extern fn $align_name(b: BlockHandle,1586 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1587...1588335 | / gen_functions!(1589336 | | block_new_aa_xdrop,1590337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1591338 | | block_align_aa_xdrop,1592... |1593352 | | AAMatrix, AAProfile, false, true1594353 | | );1595 | |_- in this macro invocation1596 |1597 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15981599warning: `extern` declarations without an explicit ABI are deprecated1600 --> ../src/ffi.rs:259:201601 |1602259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1603 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1604...1605335 | / gen_functions!(1606336 | | block_new_aa_xdrop,1607337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1608338 | | block_align_aa_xdrop,1609... |1610352 | | AAMatrix, AAProfile, false, true1611353 | | );1612 | |_- in this macro invocation1613 |1614 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16151616warning: `extern` declarations without an explicit ABI are deprecated1617 --> ../src/ffi.rs:270:201618 |1619270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1620 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1621...1622335 | / gen_functions!(1623336 | | block_new_aa_xdrop,1624337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1625338 | | block_align_aa_xdrop,1626... |1627352 | | AAMatrix, AAProfile, false, true1628353 | | );1629 | |_- in this macro invocation1630 |1631 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16321633warning: `extern` declarations without an explicit ABI are deprecated1634 --> ../src/ffi.rs:288:201635 |1636288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1637 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1638...1639335 | / gen_functions!(1640336 | | block_new_aa_xdrop,1641337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1642338 | | block_align_aa_xdrop,1643... |1644352 | | AAMatrix, AAProfile, false, true1645353 | | );1646 | |_- in this macro invocation1647 |1648 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16491650warning: `extern` declarations without an explicit ABI are deprecated1651 --> ../src/ffi.rs:295:201652 |1653295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1654 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1655...1656335 | / gen_functions!(1657336 | | block_new_aa_xdrop,1658337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1659338 | | block_align_aa_xdrop,1660... |1661352 | | AAMatrix, AAProfile, false, true1662353 | | );1663 | |_- in this macro invocation1664 |1665 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16661667warning: `extern` declarations without an explicit ABI are deprecated1668 --> ../src/ffi.rs:302:201669 |1670302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1671 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1672...1673335 | / gen_functions!(1674336 | | block_new_aa_xdrop,1675337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1676338 | | block_align_aa_xdrop,1677... |1678352 | | AAMatrix, AAProfile, false, true1679353 | | );1680 | |_- in this macro invocation1681 |1682 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16831684warning: `extern` declarations without an explicit ABI are deprecated1685 --> ../src/ffi.rs:309:201686 |1687309 | pub unsafe extern fn $free_name(b: BlockHandle) {1688 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1689...1690335 | / gen_functions!(1691336 | | block_new_aa_xdrop,1692337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1693338 | | block_align_aa_xdrop,1694... |1695352 | | AAMatrix, AAProfile, false, true1696353 | | );1697 | |_- in this macro invocation1698 |1699 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17001701warning: `extern` declarations without an explicit ABI are deprecated1702 --> ../src/ffi.rs:237:201703 |1704237 | pub unsafe extern fn $new_name(query_len: usize,1705 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1706...1707355 | / gen_functions!(1708356 | | block_new_aa_trace,1709357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1710358 | | block_align_aa_trace,1711... |1712372 | | AAMatrix, AAProfile, true, false1713373 | | );1714 | |_- in this macro invocation1715 |1716 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17171718warning: `extern` declarations without an explicit ABI are deprecated1719 --> ../src/ffi.rs:246:201720 |1721246 | pub unsafe extern fn $align_name(b: BlockHandle,1722 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1723...1724355 | / gen_functions!(1725356 | | block_new_aa_trace,1726357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1727358 | | block_align_aa_trace,1728... |1729372 | | AAMatrix, AAProfile, true, false1730373 | | );1731 | |_- in this macro invocation1732 |1733 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17341735warning: `extern` declarations without an explicit ABI are deprecated1736 --> ../src/ffi.rs:259:201737 |1738259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1739 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1740...1741355 | / gen_functions!(1742356 | | block_new_aa_trace,1743357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1744358 | | block_align_aa_trace,1745... |1746372 | | AAMatrix, AAProfile, true, false1747373 | | );1748 | |_- in this macro invocation1749 |1750 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17511752warning: `extern` declarations without an explicit ABI are deprecated1753 --> ../src/ffi.rs:270:201754 |1755270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1756 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1757...1758355 | / gen_functions!(1759356 | | block_new_aa_trace,1760357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1761358 | | block_align_aa_trace,1762... |1763372 | | AAMatrix, AAProfile, true, false1764373 | | );1765 | |_- in this macro invocation1766 |1767 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17681769warning: `extern` declarations without an explicit ABI are deprecated1770 --> ../src/ffi.rs:288:201771 |1772288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1773 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1774...1775355 | / gen_functions!(1776356 | | block_new_aa_trace,1777357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1778358 | | block_align_aa_trace,1779... |1780372 | | AAMatrix, AAProfile, true, false1781373 | | );1782 | |_- in this macro invocation1783 |1784 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17851786warning: `extern` declarations without an explicit ABI are deprecated1787 --> ../src/ffi.rs:295:201788 |1789295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1790 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1791...1792355 | / gen_functions!(1793356 | | block_new_aa_trace,1794357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1795358 | | block_align_aa_trace,1796... |1797372 | | AAMatrix, AAProfile, true, false1798373 | | );1799 | |_- in this macro invocation1800 |1801 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18021803warning: `extern` declarations without an explicit ABI are deprecated1804 --> ../src/ffi.rs:302:201805 |1806302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1807 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1808...1809355 | / gen_functions!(1810356 | | block_new_aa_trace,1811357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1812358 | | block_align_aa_trace,1813... |1814372 | | AAMatrix, AAProfile, true, false1815373 | | );1816 | |_- in this macro invocation1817 |1818 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18191820warning: `extern` declarations without an explicit ABI are deprecated1821 --> ../src/ffi.rs:309:201822 |1823309 | pub unsafe extern fn $free_name(b: BlockHandle) {1824 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1825...1826355 | / gen_functions!(1827356 | | block_new_aa_trace,1828357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1829358 | | block_align_aa_trace,1830... |1831372 | | AAMatrix, AAProfile, true, false1832373 | | );1833 | |_- in this macro invocation1834 |1835 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18361837warning: `extern` declarations without an explicit ABI are deprecated1838 --> ../src/ffi.rs:237:201839 |1840237 | pub unsafe extern fn $new_name(query_len: usize,1841 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1842...1843375 | / gen_functions!(1844376 | | block_new_aa_trace_xdrop,1845377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1846378 | | block_align_aa_trace_xdrop,1847... |1848392 | | AAMatrix, AAProfile, true, true1849393 | | );1850 | |_- in this macro invocation1851 |1852 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18531854warning: `extern` declarations without an explicit ABI are deprecated1855 --> ../src/ffi.rs:246:201856 |1857246 | pub unsafe extern fn $align_name(b: BlockHandle,1858 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1859...1860375 | / gen_functions!(1861376 | | block_new_aa_trace_xdrop,1862377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1863378 | | block_align_aa_trace_xdrop,1864... |1865392 | | AAMatrix, AAProfile, true, true1866393 | | );1867 | |_- in this macro invocation1868 |1869 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18701871warning: `extern` declarations without an explicit ABI are deprecated1872 --> ../src/ffi.rs:259:201873 |1874259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1875 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1876...1877375 | / gen_functions!(1878376 | | block_new_aa_trace_xdrop,1879377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1880378 | | block_align_aa_trace_xdrop,1881... |1882392 | | AAMatrix, AAProfile, true, true1883393 | | );1884 | |_- in this macro invocation1885 |1886 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18871888warning: `extern` declarations without an explicit ABI are deprecated1889 --> ../src/ffi.rs:270:201890 |1891270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1892 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1893...1894375 | / gen_functions!(1895376 | | block_new_aa_trace_xdrop,1896377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1897378 | | block_align_aa_trace_xdrop,1898... |1899392 | | AAMatrix, AAProfile, true, true1900393 | | );1901 | |_- in this macro invocation1902 |1903 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19041905warning: `extern` declarations without an explicit ABI are deprecated1906 --> ../src/ffi.rs:288:201907 |1908288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1909 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1910...1911375 | / gen_functions!(1912376 | | block_new_aa_trace_xdrop,1913377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1914378 | | block_align_aa_trace_xdrop,1915... |1916392 | | AAMatrix, AAProfile, true, true1917393 | | );1918 | |_- in this macro invocation1919 |1920 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19211922warning: `extern` declarations without an explicit ABI are deprecated1923 --> ../src/ffi.rs:295:201924 |1925295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1926 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1927...1928375 | / gen_functions!(1929376 | | block_new_aa_trace_xdrop,1930377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1931378 | | block_align_aa_trace_xdrop,1932... |1933392 | | AAMatrix, AAProfile, true, true1934393 | | );1935 | |_- in this macro invocation1936 |1937 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19381939warning: `extern` declarations without an explicit ABI are deprecated1940 --> ../src/ffi.rs:302:201941 |1942302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1943 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1944...1945375 | / gen_functions!(1946376 | | block_new_aa_trace_xdrop,1947377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1948378 | | block_align_aa_trace_xdrop,1949... |1950392 | | AAMatrix, AAProfile, true, true1951393 | | );1952 | |_- in this macro invocation1953 |1954 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19551956warning: `extern` declarations without an explicit ABI are deprecated1957 --> ../src/ffi.rs:309:201958 |1959309 | pub unsafe extern fn $free_name(b: BlockHandle) {1960 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1961...1962375 | / gen_functions!(1963376 | | block_new_aa_trace_xdrop,1964377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1965378 | | block_align_aa_trace_xdrop,1966... |1967392 | | AAMatrix, AAProfile, true, true1968393 | | );1969 | |_- in this macro invocation1970 |1971 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19721973warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions)1974 Finished `release` profile [optimized] target(s) in 0.00s1975[ 37%] Built target gemmiwrapper1976[ 40%] Built target ggml-cpu1977Copying byproducts `libblock_aligner_c.a` to /build/source/build1978[ 40%] Built target ggml1979[ 40%] Built target _cargo-build_block_aligner_c1980[ 42%] Built target llama1981[ 42%] Built target cargo-build_block_aligner_c1982[ 43%] Built target prostt51983[ 89%] Built target mmseqs-framework1984[ 89%] Built target pulchra1985[ 89%] Built target kerasify1986[ 89%] Built target 3di1987[ 90%] Built target tmalign1988[100%] Built target foldseek-framework1989[100%] Built target foldseek1990Install the project...1991-- Install configuration: "Release"1992-- Installing: /nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/bin/foldseekfixupPhase
1993shrinking RPATHs of ELF executables and libraries in /nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd331994shrinking /nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/bin/foldseek1995checking for references to /build/ in /nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33...1996patching script interpreter paths in /nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd331997stripping (with command strip and flags -S -p) in /nix/store/kgfgngvvb1c3myz5r2lwcgg5lhh2gfjn-foldseek-10-941cd33/bin