Running phase: unpackPhase unpacking source archive /nix/store/r2vsfkh8z5m24dg1dgyrmqjwvka53rgc-source source root is source Executing cargoSetupPostUnpackHook Finished cargoSetupPostUnpackHook Running phase: patchPhase Executing cargoSetupPostPatchHook Validating consistency between /build/source/Cargo.lock and /build/folddisco-2-9375a2d-vendor/Cargo.lock Finished cargoSetupPostPatchHook Running phase: updateAutotoolsGnuConfigScriptsPhase Running phase: configurePhase Running phase: buildPhase Executing cargoBuildHook cargoBuildHook flags: -j 48 --target x86_64-unknown-linux-gnu --offline --profile release Compiling proc-macro2 v1.0.101 Compiling glob v0.3.3 Compiling quote v1.0.41 Compiling unicode-ident v1.0.19 Compiling crossbeam-utils v0.8.21 Compiling serde_core v1.0.228 Compiling libc v0.2.177 Compiling serde v1.0.228 Compiling prettyplease v0.2.37 Compiling rustix v0.38.44 Compiling shlex v1.3.0 Compiling cfg-if v1.0.3 Compiling either v1.15.0 Compiling regex-syntax v0.8.6 Compiling minimal-lexical v0.2.1 Compiling memchr v2.7.6 Compiling linux-raw-sys v0.4.15 Compiling bitflags v2.9.4 Compiling bindgen v0.69.5 Compiling equivalent v1.0.2 Compiling rayon-core v1.13.0 Compiling home v0.5.11 Compiling hashbrown v0.16.0 Compiling find-msvc-tools v0.1.4 Compiling log v0.4.28 Compiling lazy_static v1.5.0 Compiling crc32fast v1.5.0 Compiling rustc-hash v1.1.0 Compiling lazycell v1.3.0 Compiling parking_lot_core v0.9.12 Compiling adler2 v2.0.1 Compiling simd-adler32 v0.3.7 Compiling toml_write v0.1.2 Compiling scopeguard v1.2.0 Compiling winnow v0.7.13 Compiling smallvec v1.15.1 Compiling hashbrown v0.14.5 Compiling fixedbitset v0.4.2 Compiling once_cell v1.21.3 Compiling pdbtbx-cif v0.12.0 (/build/source/lib/pdbtbx-cif) Compiling byteorder v1.5.0 Compiling rustc-hash v2.1.1 Compiling pico-args v0.5.0 (/build/source/lib/pico-args) Compiling libloading v0.8.9 Compiling lock_api v0.4.14 Compiling itertools v0.12.1 Compiling cc v1.2.41 Compiling clang-sys v1.8.1 Compiling miniz_oxide v0.8.9 Compiling nom v7.1.3 Compiling aho-corasick v1.1.3 Compiling indexmap v2.11.4 Compiling syn v2.0.106 Compiling flate2 v1.1.4 Compiling crossbeam-epoch v0.9.18 Compiling regex-automata v0.4.11 Compiling cmake v0.1.54 Compiling crossbeam-deque v0.8.6 Compiling memmap2 v0.9.8 Compiling petgraph v0.6.5 Compiling rayon v1.11.0 Compiling cexpr v0.6.0 Compiling which v4.4.2 Compiling regex v1.11.3 Compiling serde_spanned v0.6.9 Compiling toml_datetime v0.6.11 Compiling toml_edit v0.22.27 Compiling dashmap v6.1.0 Compiling toml v0.8.23 Compiling folddisco v2.0.0 (/build/source) Finished `release` profile [optimized] target(s) in 1m 22s Executing cargoInstallPostBuildHook Finished cargoInstallPostBuildHook Finished cargoBuildHook buildPhase completed in 1 minutes 22 seconds Running phase: checkPhase Executing cargoCheckHook cargoCheckHook flags: -j 48 --profile release --target x86_64-unknown-linux-gnu --offline -- Compiling folddisco v2.0.0 (/build/source) Finished `release` profile [optimized] target(s) in 16.71s Running unittests src/lib.rs (target/x86_64-unknown-linux-gnu/release/deps/folddisco-7572e25a606d6b56) running 103 tests test cli::workflows::benchmark::tests::test_benchmark ... ignored test cli::workflows::build_index::tests::test_build_index ... ignored test cli::workflows::build_index::tests::test_build_index_of_foldcomp_db ... ignored test cli::workflows::query_pdb::tests::test_query_pdb_with_file ... ignored test cli::workflows::query_pdb::tests::test_query_pdb_workflow ... ignored test cli::workflows::query_pdb::tests::test_query_with_foldcompdb ... ignored test controller::mode::tests::test_id_type ... ok test cli::config::tests::test_write_index_config_to_file ... ok test controller::graph::tests::test_graph ... ok test controller::io::tests::test_usize_vector_io ... ok test controller::query::tests::test_parse_query_string_with_space_and_no_chain ... ok test controller::mode::tests::test_parse_path_by_id_type ... ok test controller::query::tests::test_parse_query_string_with_range ... ok test controller::sort::tests::test_sort_order_from_str ... ok test controller::sort::tests::test_default_order ... ok test controller::sort::tests::test_printing_strategies ... ok test controller::sort::tests::test_strategy_from_str ... ok test controller::query::tests::test_parse_query_string ... ok test controller::query::tests::test_parse_query_string_with_aa_substitution ... ok test controller::query::tests::test_add_shifted_hashes ... ok test controller::query::tests::test_parse_query_string_with_space ... ok test controller::query::tests::test_make_query_map ... ok test controller::sort::tests::test_strategy_with_dummy_data ... ok test controller::sort::tests::test_sort_key_from_str ... ok test controller::sort::tests::test_structure_sort_key_from_str ... ok test geometry::folddisco_angle::tests::test_geometrichash_works ... ok test controller::sort::tests::test_structure_strategy_from_str ... ok test geometry::core::tests::test_hash_type ... ok test geometry::pdb_motif::tests::test_default_hash_works ... ok test controller::sort::tests::test_structure_default_order ... ok test geometry::folddisco_dist::tests::test_geometrichash_works ... ok test controller::sort::tests::test_structure_strategy_with_dummy_data ... ok test geometry::pdb_motif::tests::test_hash_works ... ok test geometry::hybrid::tests::test_geometrichash_works ... ok test geometry::pdb_motif_sincos::tests::test_geometrichash_works ... ok test controller::io::tests::test_offset_map_io ... ok test controller::retrieve::tests::test_retrieval_wrapper ... ok test geometry::pdb_tr::tests::test_geometrichash_works ... ok test structure::io::cif::tests::test_get_one_char_numeric ... ok test geometry::pdb_tr::tests::test_deduplication_correctness ... ok test structure::io::fcz::bindgen_test_layout__opaque_pthread_attr_t ... ok test geometry::tertiary_interaction::tests::test_geometrichash_works ... ok test structure::io::fcz::bindgen_test_layout__opaque_pthread_rwlock_t ... ok test structure::io::fcz::bindgen_test_layout__opaque_pthread_t ... ok test structure::io::parser::parser_tests::test_parse_line_success ... ok test structure::io::cif::tests::test_get_one_char_numeric_multi_digit ... ok test structure::io::parser::parser_tests::test_parse_residue ... ok test structure::io::parser::parser_tests::test_parse_line_fail_serial ... ok test structure::io::parser::parser_tests::test_parse_atom ... ok test structure::io::fcz::bindgen_test_layout__opaque_pthread_condattr_t ... ok test structure::lms_qcp::tests::lms_qcp_excludes_outlier ... ignored test structure::kabsch::tests::test_kabsch_superimposer ... ok test structure::io::pdb::tests::test_get_min_max_coords ... ok test utils::combination::tests::test_long_combination_iterator ... ok test utils::convert::tests::test_map_aa_to_u8 ... ok test structure::kabsch::tests::test_identical_structures ... ok test structure::io::fcz::bindgen_test_layout__opaque_pthread_mutexattr_t ... ok test structure::io::cif::tests::test_get_four_char_array_numeric ... ok test structure::io::pdb::tests::test_read_pdb ... ok test structure::io::parser::parser_tests::test_parse_residue_fail ... ok test structure::qcp::tests::test_qcp_superimposer ... ok test structure::core::structure_tests::test_avg_bfactor ... ok test utils::combination::tests::test_combination_iterator ... ok test structure::io::pdb::tests::test_read_pdb_gz ... ok test structure::io::parser::parser_tests::test_parse_line_float ... ok test geometry::ppf::tests::test_multiple_bins ... ok test structure::metrics::tests::test_with_outlier_coordinates ... ok test structure::io::fcz::bindgen_test_layout__opaque_pthread_cond_t ... ok test structure::io::fcz::bindgen_test_layout_atom_t ... ok test structure::io::fcz::bindgen_test_layout__opaque_pthread_once_t ... ok test geometry::ppf::tests::test_hashvalue ... ok test structure::io::parser::parser_tests::test_parse_atom_fail ... ok test structure::metrics::tests::test_metrics_calculate_all_with_identical ... ok test structure::io::cif::tests::test_get_three_char_array_numeric ... ok test structure::io::fcz::bindgen_test_layout__opaque_pthread_mutex_t ... ok test structure::io::pdb::tests::test_loading_works ... ok test geometry::trrosetta::tests::test_default_hash_works ... ok test utils::log::tests::test_colored_log ... ok test structure::coordinate::coordinate_tests::test_calc_torsion_angle_vec ... ok test structure::io::fcz::bindgen_test_layout___mbstate_t ... ok test structure::io::fcz::bindgen_test_layout__opaque_pthread_rwlockattr_t ... ok test structure::io::fcz::bindgen_test_layout___va_list_tag ... ok test utils::formatter::tests::test_tsv_formatter ... ok test structure::io::fcz::bindgen_test_layout___darwin_pthread_handler_rec ... ok test structure::coordinate::coordinate_tests::test_calc_torsion_angle ... ok test structure::core::structure_tests::test_gly_integration ... ok test index::lookup::tests::test_save_and_load_lookup ... ok test structure::coordinate::coordinate_tests::test_approx_cb ... ok test geometry::trrosetta::tests::test_multiple_bins ... ok test geometry::pdb_tr::tests::test_deduplication_inline_performance ... ok test structure::io::fcz::tests::test_foldcomp ... ok test structure::io::cif::tests::test_read_cif_from_pdb_gz ... ok test utils::loader::tests::test_load_path ... ok test structure::metrics::tests::test_with_long_coordinates ... ok test structure::metrics::tests::test_with_real_coordinates ... ok test controller::feature::tests::test_get_geometric_hash_with_shifts ... ok test geometry::pdb_tr::tests::test_feature_distribution_analysis ... ok test structure::io::cif::tests::test_read_cif_from_afdb_gz ... ok test structure::io::fcz::tests::test_foldcomp_db_reader ... ok test structure::io::cif::tests::test_read_cif_from_pdb ... ok test structure::io::cif::tests::test_read_cif_from_afdb ... ok test index::indextable::tests::test_folddisco_index ... ok test geometry::pdb_tr::tests::test_max_32_shifts_efficiency ... ok test result: ok. 96 passed; 0 failed; 7 ignored; 0 measured; 0 filtered out; finished in 0.22s Running unittests src/cli/main.rs (target/x86_64-unknown-linux-gnu/release/deps/folddisco-7516a44cece2e2e2) running 0 tests test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s Running tests/mod.rs (target/x86_64-unknown-linux-gnu/release/deps/mod-7935474aa46bae35) running 0 tests test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s Doc-tests folddisco running 0 tests test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s Finished cargoCheckHook Running phase: installPhase Executing cargoInstallHook Finished cargoInstallHook Running phase: fixupPhase shrinking RPATHs of ELF executables and libraries in /nix/store/zjkl3z3lcvn9frr5qwn54hvvdfcpc0w9-folddisco-2-9375a2d shrinking /nix/store/zjkl3z3lcvn9frr5qwn54hvvdfcpc0w9-folddisco-2-9375a2d/bin/folddisco checking for references to /build/ in /nix/store/zjkl3z3lcvn9frr5qwn54hvvdfcpc0w9-folddisco-2-9375a2d... patching script interpreter paths in /nix/store/zjkl3z3lcvn9frr5qwn54hvvdfcpc0w9-folddisco-2-9375a2d stripping (with command strip and flags -S -p) in /nix/store/zjkl3z3lcvn9frr5qwn54hvvdfcpc0w9-folddisco-2-9375a2d/bin