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usalign-20260911 checks.x86_64-linux.pkgs-usalign · build #74 · raw

unpackPhase
1unpacking source archive /nix/store/4h9167f6827iqf8k2db5hjan8s87brym-source2source root is source
configurePhase
3no configure script, doing nothing
buildPhase
4build flags: -j48 SHELL=/nix/store/9ipfvwnqp1q8ijnmi5sxvlx9r8w34lw3-bash-5.3p15/bin/bash CC=c++5c++ -O3 -ffast-math qTMclust.cpp -o qTMclust 6c++ -O3 -ffast-math USalign.cpp -o USalign 7c++ -O3 -ffast-math USFlexalign.cpp -o USFlexalign 8c++ -O3 -ffast-math TMalign.cpp -o TMalign 9c++ -O3 -ffast-math TMscore.cpp -o TMscore 10c++ -O3 -ffast-math MMalign.cpp -o MMalign 11c++ -O3 -ffast-math se.cpp -o se 12c++ -O3 -ffast-math pdb2xyz.cpp -o pdb2xyz 13c++ -O3 -ffast-math xyz_sfetch.cpp -o xyz_sfetch 14c++ -O3 -ffast-math pdb2fasta.cpp -o pdb2fasta 15c++ -O3 -ffast-math biounitasym.cpp -o biounitasym 16c++ -O3 -ffast-math pdb2ss.cpp -o pdb2ss 17c++ -O3 -ffast-math NWalign.cpp -o NWalign 18c++ -O3 -ffast-math HwRMSD.cpp -o HwRMSD 19c++ -O3 -ffast-math cif2pdb.cpp -o cif2pdb 20c++ -O3 -ffast-math pdbAtomName.cpp -o pdbAtomName 21c++ -O3 -ffast-math addChainID.cpp -o addChainID
fixupPhase
22shrinking RPATHs of ELF executables and libraries in /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-2026091123shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/qTMclust24shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/USalign25shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/TMalign26shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/TMscore27shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/MMalign28shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/se29shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/pdb2xyz30shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/xyz_sfetch31shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/pdb2fasta32shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/biounitasym33shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/pdb2ss34shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/NWalign35shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/HwRMSD36shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/cif2pdb37shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/pdbAtomName38shrinking /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin/addChainID39checking for references to /build/ in /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911...40patching script interpreter paths in /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-2026091141stripping (with command strip and flags -S -p) in /nix/store/26ckbgncc28n2k7w76hxyzcw6zzwqasi-usalign-20260911/bin