these 2 derivations will be built:
  /nix/store/5gcxkicld9ibynjwp5n3fgiw1ll88yyf-source.drv
  /nix/store/bhm848bwacdjp1aiiw3f473nyzw5yrc2-usalign-20260910.drv
building '/nix/store/ps32wip0mj44wny9xi199svif6qq7mh7-source.drv'
source> structuredAttrs is enabled
source> 
source> trying https://github.com/pylelab/USalign/archive/ee333657ae554886dd7141db16e345566a777976.tar.gz
source>   % Total    % Received % Xferd  Average Speed  Time    Time    Time   Current
source>                                  Dload  Upload  Total   Spent   Left   Speed
source> 
source>   0      0   0      0   0      0      0      0                              0
source>   0      0   0      0   0      0      0      0                              0
source>   0      0   0      0   0      0      0      0                              0
source> 
source>   0      0   0      0   0      0      0      0                              0
source> 100 278.5k   0 278.5k   0      0 334.8k      0                              0
source> 100 278.5k   0 278.5k   0      0 334.7k      0                              0
source> 100 278.5k   0 278.5k   0      0 334.7k      0                              0
source> unpacking source archive /build/download.tar.gz
building '/nix/store/bhm848bwacdjp1aiiw3f473nyzw5yrc2-usalign-20260910.drv'
usalign-20260910> Running phase: unpackPhase
usalign-20260910> unpacking source archive /nix/store/84jdasiq7j06hcp83h02xsr360shz1sv-source
usalign-20260910> source root is source
usalign-20260910> Running phase: patchPhase
usalign-20260910> Running phase: updateAutotoolsGnuConfigScriptsPhase
usalign-20260910> Running phase: configurePhase
usalign-20260910> no configure script, doing nothing
usalign-20260910> Running phase: buildPhase
usalign-20260910> build flags: -j48 SHELL=/nix/store/9ipfvwnqp1q8ijnmi5sxvlx9r8w34lw3-bash-5.3p15/bin/bash CC=c++
usalign-20260910> c++ -O3 -ffast-math qTMclust.cpp -o qTMclust 
usalign-20260910> c++ -O3 -ffast-math USalign.cpp -o USalign 
usalign-20260910> c++ -O3 -ffast-math USFlexalign.cpp -o USFlexalign 
usalign-20260910> c++ -O3 -ffast-math TMalign.cpp -o TMalign 
usalign-20260910> c++ -O3 -ffast-math TMscore.cpp -o TMscore 
usalign-20260910> c++ -O3 -ffast-math MMalign.cpp -o MMalign 
usalign-20260910> c++ -O3 -ffast-math se.cpp -o se 
usalign-20260910> c++ -O3 -ffast-math pdb2xyz.cpp -o pdb2xyz 
usalign-20260910> c++ -O3 -ffast-math xyz_sfetch.cpp -o xyz_sfetch 
usalign-20260910> c++ -O3 -ffast-math pdb2fasta.cpp -o pdb2fasta 
usalign-20260910> c++ -O3 -ffast-math biounitasym.cpp -o biounitasym 
usalign-20260910> c++ -O3 -ffast-math pdb2ss.cpp -o pdb2ss 
usalign-20260910> c++ -O3 -ffast-math NWalign.cpp -o NWalign 
usalign-20260910> c++ -O3 -ffast-math HwRMSD.cpp -o HwRMSD 
usalign-20260910> c++ -O3 -ffast-math cif2pdb.cpp -o cif2pdb 
usalign-20260910> c++ -O3 -ffast-math pdbAtomName.cpp -o pdbAtomName 
usalign-20260910> c++ -O3 -ffast-math addChainID.cpp -o addChainID 
usalign-20260910> Running phase: installPhase
usalign-20260910> Running phase: fixupPhase
usalign-20260910> shrinking RPATHs of ELF executables and libraries in /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/qTMclust
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/USalign
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/TMalign
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/TMscore
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/MMalign
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/se
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/pdb2xyz
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/xyz_sfetch
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/pdb2fasta
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/biounitasym
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/pdb2ss
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/NWalign
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/HwRMSD
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/cif2pdb
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/pdbAtomName
usalign-20260910> shrinking /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin/addChainID
usalign-20260910> checking for references to /build/ in /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910...
usalign-20260910> patching script interpreter paths in /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910
usalign-20260910> stripping (with command strip and flags -S -p) in /nix/store/75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910/bin

post-build step Route build to niks3: ok
Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org
time=2026-09-11T05:22:54.572+09:00 level=INFO msg="Uploading 1 paths to niks3.sjanglab.org (6 already cached)"
time=2026-09-11T05:22:54.572+09:00 level=INFO msg="Uploading 75ys9bc8bmrr4b636a5mkc2lrjndalyw-usalign-20260910 (5.3MB)"
time=2026-09-11T05:22:55.701+09:00 level=INFO msg="Uploading 1 narinfos"
time=2026-09-11T05:22:56.200+09:00 level=INFO msg="Upload complete. (1.714s)"