python3.14-biotite-1.7.1
checks.x86_64-linux.pkgs-biotite
· build #73
· raw
1Sourcing python-remove-tests-dir-hook2Sourcing python-catch-conflicts-hook.sh3Sourcing python-remove-bin-bytecode-hook.sh4Sourcing pypa-build-hook5Using pypaBuildPhase6Sourcing python-runtime-deps-check-hook7Using pythonRuntimeDepsCheckHook8Sourcing pypa-install-hook9Using pypaInstallPhase10Sourcing python-imports-check-hook.sh11Using pythonImportsCheckPhase12Sourcing python-metadata-check-hook.sh13Using pythonMetadataCheckPhase14Sourcing python-namespaces-hook15Sourcing python-catch-conflicts-hook.sh16Sourcing setuptools-rust-hook17Using checkPhaseThreadLimitHook
unpackPhase
18unpacking source archive /nix/store/aa831ygkbmvxv42nkc86z3zqsk5hgkcb-source19source root is source20Executing cargoSetupPostUnpackHook21Finished cargoSetupPostUnpackHook22setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/util.py"patchPhase
23Executing cargoSetupPostPatchHook24Validating consistency between /build/source/Cargo.lock and /build/biotite-1.7.1-vendor-vendor/Cargo.lock25Finished cargoSetupPostPatchHookconfigurePhase
26no configure script, doing nothingbuildPhase
27Executing pypaBuildPhase28Including all tracked files automatically29Creating a wheel...30pypa build flags: --no-isolation --outdir dist/ --wheel31* Getting build dependencies for wheel...32/nix/store/3zlx10nf4db20nvmiyylvkk9wrsbb3as-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:483: SetuptoolsDeprecationWarning: Cannot find any files for the given pattern.33!!3435 ********************************************************************************36 Pattern 'THIRDPARTY.yml' did not match any files.3738 By 2027-Feb-18, you need to update your project and remove deprecated calls39 or your builds will no longer be supported.40 ********************************************************************************4142!!43 for path in sorted(cls._find_pattern(pattern, enforce_match))44running egg_info45creating src/biotite.egg-info46writing src/biotite.egg-info/PKG-INFO47writing dependency_links to src/biotite.egg-info/dependency_links.txt48writing requirements to src/biotite.egg-info/requires.txt49writing top-level names to src/biotite.egg-info/top_level.txt50writing manifest file 'src/biotite.egg-info/SOURCES.txt'51/nix/store/7kj6l70lbkj7b1p9f6xlpbb30ali0m59-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.52 return get_active_overrides().subprocess_timeout53reading manifest file 'src/biotite.egg-info/SOURCES.txt'54reading manifest template 'MANIFEST.in'55warning: no files found matching 'src/biotite/structure/info/components.bcif'56adding license file 'LICENSE.rst'57writing manifest file 'src/biotite.egg-info/SOURCES.txt'58* Building wheel...59[ 1/14] Cythonizing src/biotite/sequence/align/banded.pyx60[ 2/14] Cythonizing src/biotite/sequence/align/kmeralphabet.pyx61[ 3/14] Cythonizing src/biotite/sequence/align/kmersimilarity.pyx62[ 4/14] Cythonizing src/biotite/sequence/align/kmertable.pyx63[ 5/14] Cythonizing src/biotite/sequence/align/localgapped.pyx64[ 6/14] Cythonizing src/biotite/sequence/align/localungapped.pyx65performance hint: src/biotite/sequence/align/localungapped.pyx:202:37: Index should be typed for more efficient access66performance hint: src/biotite/sequence/align/localungapped.pyx:202:56: Index should be typed for more efficient access67[ 7/14] Cythonizing src/biotite/sequence/align/multiple.pyx68[ 8/14] Cythonizing src/biotite/sequence/align/pairwise.pyx69[ 9/14] Cythonizing src/biotite/sequence/align/permutation.pyx70[10/14] Cythonizing src/biotite/sequence/align/selector.pyx71[11/14] Cythonizing src/biotite/sequence/align/tracetable.pyx72[12/14] Cythonizing src/biotite/sequence/phylo/nj.pyx73[13/14] Cythonizing src/biotite/sequence/phylo/tree.pyx74[14/14] Cythonizing src/biotite/sequence/phylo/upgma.pyx75/nix/store/3zlx10nf4db20nvmiyylvkk9wrsbb3as-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:483: SetuptoolsDeprecationWarning: Cannot find any files for the given pattern.76!!7778 ********************************************************************************79 Pattern 'THIRDPARTY.yml' did not match any files.8081 By 2027-Feb-18, you need to update your project and remove deprecated calls82 or your builds will no longer be supported.83 ********************************************************************************8485!!86 for path in sorted(cls._find_pattern(pattern, enforce_match))87running bdist_wheel88running build89running build_py90creating build/lib.linux-x86_64-cpython-314/biotite91copying src/biotite/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite92copying src/biotite/copyable.py -> build/lib.linux-x86_64-cpython-314/biotite93copying src/biotite/file.py -> build/lib.linux-x86_64-cpython-314/biotite94copying src/biotite/setup_ccd.py -> build/lib.linux-x86_64-cpython-314/biotite95copying src/biotite/typing.py -> build/lib.linux-x86_64-cpython-314/biotite96copying src/biotite/visualize.py -> build/lib.linux-x86_64-cpython-314/biotite97copying src/biotite/version.py -> build/lib.linux-x86_64-cpython-314/biotite98creating build/lib.linux-x86_64-cpython-314/biotite/application99copying src/biotite/application/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application100copying src/biotite/application/application.py -> build/lib.linux-x86_64-cpython-314/biotite/application101copying src/biotite/application/localapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application102copying src/biotite/application/msaapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application103copying src/biotite/application/util.py -> build/lib.linux-x86_64-cpython-314/biotite/application104copying src/biotite/application/webapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application105creating build/lib.linux-x86_64-cpython-314/biotite/database106copying src/biotite/database/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database107copying src/biotite/database/error.py -> build/lib.linux-x86_64-cpython-314/biotite/database108creating build/lib.linux-x86_64-cpython-314/biotite/interface109copying src/biotite/interface/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface110copying src/biotite/interface/version.py -> build/lib.linux-x86_64-cpython-314/biotite/interface111copying src/biotite/interface/warning.py -> build/lib.linux-x86_64-cpython-314/biotite/interface112creating build/lib.linux-x86_64-cpython-314/biotite/sequence113copying src/biotite/sequence/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence114copying src/biotite/sequence/alphabet.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence115copying src/biotite/sequence/annotation.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence116copying src/biotite/sequence/codon.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence117copying src/biotite/sequence/profile.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence118copying src/biotite/sequence/search.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence119copying src/biotite/sequence/seqtypes.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence120copying src/biotite/sequence/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence121creating build/lib.linux-x86_64-cpython-314/biotite/structure122copying src/biotite/structure/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure123copying src/biotite/structure/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure124copying src/biotite/structure/basepairs.py -> build/lib.linux-x86_64-cpython-314/biotite/structure125copying src/biotite/structure/bonds.py -> build/lib.linux-x86_64-cpython-314/biotite/structure126copying src/biotite/structure/box.py -> build/lib.linux-x86_64-cpython-314/biotite/structure127copying src/biotite/structure/celllist.py -> build/lib.linux-x86_64-cpython-314/biotite/structure128copying src/biotite/structure/chains.py -> build/lib.linux-x86_64-cpython-314/biotite/structure129copying src/biotite/structure/charges.py -> build/lib.linux-x86_64-cpython-314/biotite/structure130copying src/biotite/structure/compare.py -> build/lib.linux-x86_64-cpython-314/biotite/structure131copying src/biotite/structure/connect.py -> build/lib.linux-x86_64-cpython-314/biotite/structure132copying src/biotite/structure/density.py -> build/lib.linux-x86_64-cpython-314/biotite/structure133copying src/biotite/structure/dotbracket.py -> build/lib.linux-x86_64-cpython-314/biotite/structure134copying src/biotite/structure/error.py -> build/lib.linux-x86_64-cpython-314/biotite/structure135copying src/biotite/structure/filter.py -> build/lib.linux-x86_64-cpython-314/biotite/structure136copying src/biotite/structure/geometry.py -> build/lib.linux-x86_64-cpython-314/biotite/structure137copying src/biotite/structure/hbond.py -> build/lib.linux-x86_64-cpython-314/biotite/structure138copying src/biotite/structure/integrity.py -> build/lib.linux-x86_64-cpython-314/biotite/structure139copying src/biotite/structure/mechanics.py -> build/lib.linux-x86_64-cpython-314/biotite/structure140copying src/biotite/structure/molecules.py -> build/lib.linux-x86_64-cpython-314/biotite/structure141copying src/biotite/structure/pseudoknots.py -> build/lib.linux-x86_64-cpython-314/biotite/structure142copying src/biotite/structure/rdf.py -> build/lib.linux-x86_64-cpython-314/biotite/structure143copying src/biotite/structure/repair.py -> build/lib.linux-x86_64-cpython-314/biotite/structure144copying src/biotite/structure/residues.py -> build/lib.linux-x86_64-cpython-314/biotite/structure145copying src/biotite/structure/rings.py -> build/lib.linux-x86_64-cpython-314/biotite/structure146copying src/biotite/structure/sasa.py -> build/lib.linux-x86_64-cpython-314/biotite/structure147copying src/biotite/structure/segments.py -> build/lib.linux-x86_64-cpython-314/biotite/structure148copying src/biotite/structure/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/structure149copying src/biotite/structure/sse.py -> build/lib.linux-x86_64-cpython-314/biotite/structure150copying src/biotite/structure/tm.py -> build/lib.linux-x86_64-cpython-314/biotite/structure151copying src/biotite/structure/transform.py -> build/lib.linux-x86_64-cpython-314/biotite/structure152copying src/biotite/structure/util.py -> build/lib.linux-x86_64-cpython-314/biotite/structure153copying src/biotite/structure/superimpose.py -> build/lib.linux-x86_64-cpython-314/biotite/structure154creating build/lib.linux-x86_64-cpython-314/biotite/application/autodock155copying src/biotite/application/autodock/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/autodock156copying src/biotite/application/autodock/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/autodock157creating build/lib.linux-x86_64-cpython-314/biotite/application/blast158copying src/biotite/application/blast/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast159copying src/biotite/application/blast/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast160copying src/biotite/application/blast/webapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast161creating build/lib.linux-x86_64-cpython-314/biotite/application/clustalo162copying src/biotite/application/clustalo/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/clustalo163copying src/biotite/application/clustalo/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/clustalo164creating build/lib.linux-x86_64-cpython-314/biotite/application/dssp165copying src/biotite/application/dssp/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/dssp166copying src/biotite/application/dssp/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/dssp167creating build/lib.linux-x86_64-cpython-314/biotite/application/mafft168copying src/biotite/application/mafft/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/mafft169copying src/biotite/application/mafft/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/mafft170creating build/lib.linux-x86_64-cpython-314/biotite/application/muscle171copying src/biotite/application/muscle/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle172copying src/biotite/application/muscle/app3.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle173copying src/biotite/application/muscle/app5.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle174creating build/lib.linux-x86_64-cpython-314/biotite/application/sra175copying src/biotite/application/sra/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/sra176copying src/biotite/application/sra/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/sra177creating build/lib.linux-x86_64-cpython-314/biotite/application/tantan178copying src/biotite/application/tantan/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/tantan179copying src/biotite/application/tantan/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/tantan180creating build/lib.linux-x86_64-cpython-314/biotite/application/viennarna181copying src/biotite/application/viennarna/rnaalifold.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna182copying src/biotite/application/viennarna/rnafold.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna183copying src/biotite/application/viennarna/rnaplot.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna184copying src/biotite/application/viennarna/util.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna185copying src/biotite/application/viennarna/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna186creating build/lib.linux-x86_64-cpython-314/biotite/database/afdb187copying src/biotite/database/afdb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/afdb188copying src/biotite/database/afdb/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/afdb189creating build/lib.linux-x86_64-cpython-314/biotite/database/entrez190copying src/biotite/database/entrez/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez191copying src/biotite/database/entrez/check.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez192copying src/biotite/database/entrez/dbnames.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez193copying src/biotite/database/entrez/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez194copying src/biotite/database/entrez/key.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez195copying src/biotite/database/entrez/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez196creating build/lib.linux-x86_64-cpython-314/biotite/database/pubchem197copying src/biotite/database/pubchem/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem198copying src/biotite/database/pubchem/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem199copying src/biotite/database/pubchem/error.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem200copying src/biotite/database/pubchem/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem201copying src/biotite/database/pubchem/throttle.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem202creating build/lib.linux-x86_64-cpython-314/biotite/database/rcsb203copying src/biotite/database/rcsb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb204copying src/biotite/database/rcsb/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb205copying src/biotite/database/rcsb/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb206creating build/lib.linux-x86_64-cpython-314/biotite/database/uniprot207copying src/biotite/database/uniprot/check.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot208copying src/biotite/database/uniprot/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot209copying src/biotite/database/uniprot/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot210copying src/biotite/database/uniprot/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot211creating build/lib.linux-x86_64-cpython-314/biotite/interface/openmm212copying src/biotite/interface/openmm/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm213copying src/biotite/interface/openmm/state.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm214copying src/biotite/interface/openmm/system.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm215creating build/lib.linux-x86_64-cpython-314/biotite/interface/pymol216copying src/biotite/interface/pymol/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol217copying src/biotite/interface/pymol/cgo.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol218copying src/biotite/interface/pymol/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol219copying src/biotite/interface/pymol/display.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol220copying src/biotite/interface/pymol/object.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol221copying src/biotite/interface/pymol/shapes.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol222copying src/biotite/interface/pymol/startup.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol223creating build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit224copying src/biotite/interface/rdkit/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit225copying src/biotite/interface/rdkit/mol.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit226creating build/lib.linux-x86_64-cpython-314/biotite/sequence/align227copying src/biotite/sequence/align/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align228copying src/biotite/sequence/align/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align229copying src/biotite/sequence/align/buckets.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align230copying src/biotite/sequence/align/cigar.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align231copying src/biotite/sequence/align/matrix.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align232copying src/biotite/sequence/align/statistics.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align233creating build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics234copying src/biotite/sequence/graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics235copying src/biotite/sequence/graphics/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics236copying src/biotite/sequence/graphics/colorschemes.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics237copying src/biotite/sequence/graphics/dendrogram.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics238copying src/biotite/sequence/graphics/features.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics239copying src/biotite/sequence/graphics/logo.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics240copying src/biotite/sequence/graphics/plasmid.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics241creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io242copying src/biotite/sequence/io/general.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io243copying src/biotite/sequence/io/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io244creating build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo245copying src/biotite/sequence/phylo/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo246creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal247copying src/biotite/sequence/io/clustal/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal248copying src/biotite/sequence/io/clustal/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal249copying src/biotite/sequence/io/clustal/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal250creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta251copying src/biotite/sequence/io/fasta/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta252copying src/biotite/sequence/io/fasta/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta253copying src/biotite/sequence/io/fasta/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta254creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq255copying src/biotite/sequence/io/fastq/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq256copying src/biotite/sequence/io/fastq/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq257copying src/biotite/sequence/io/fastq/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq258creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank259copying src/biotite/sequence/io/genbank/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank260copying src/biotite/sequence/io/genbank/annotation.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank261copying src/biotite/sequence/io/genbank/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank262copying src/biotite/sequence/io/genbank/metadata.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank263copying src/biotite/sequence/io/genbank/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank264creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff265copying src/biotite/sequence/io/gff/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff266copying src/biotite/sequence/io/gff/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff267copying src/biotite/sequence/io/gff/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff268creating build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet269copying src/biotite/structure/alphabet/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet270copying src/biotite/structure/alphabet/encoder.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet271copying src/biotite/structure/alphabet/i3d.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet272copying src/biotite/structure/alphabet/layers.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet273copying src/biotite/structure/alphabet/pb.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet274copying src/biotite/structure/alphabet/unkerasify.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet275creating build/lib.linux-x86_64-cpython-314/biotite/structure/graphics276copying src/biotite/structure/graphics/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics277copying src/biotite/structure/graphics/rna.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics278copying src/biotite/structure/graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics279creating build/lib.linux-x86_64-cpython-314/biotite/structure/info280copying src/biotite/structure/info/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info281copying src/biotite/structure/info/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info282copying src/biotite/structure/info/bonds.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info283copying src/biotite/structure/info/ccd.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info284copying src/biotite/structure/info/groups.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info285copying src/biotite/structure/info/masses.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info286copying src/biotite/structure/info/misc.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info287copying src/biotite/structure/info/radii.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info288copying src/biotite/structure/info/standardize.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info289creating build/lib.linux-x86_64-cpython-314/biotite/structure/io290copying src/biotite/structure/io/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io291copying src/biotite/structure/io/general.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io292copying src/biotite/structure/io/trajfile.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io293copying src/biotite/structure/io/util.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io294creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr295copying src/biotite/structure/io/trr/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr296copying src/biotite/structure/io/trr/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr297creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc298copying src/biotite/structure/io/xtc/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc299copying src/biotite/structure/io/xtc/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc300creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd301copying src/biotite/structure/io/dcd/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd302copying src/biotite/structure/io/dcd/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd303creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro304copying src/biotite/structure/io/gro/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro305copying src/biotite/structure/io/gro/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro306creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol307copying src/biotite/structure/io/mol/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol308copying src/biotite/structure/io/mol/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol309copying src/biotite/structure/io/mol/ctab.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol310copying src/biotite/structure/io/mol/header.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol311copying src/biotite/structure/io/mol/mol.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol312copying src/biotite/structure/io/mol/sdf.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol313creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf314copying src/biotite/structure/io/netcdf/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf315copying src/biotite/structure/io/netcdf/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf316creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb317copying src/biotite/structure/io/pdb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb318copying src/biotite/structure/io/pdb/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb319copying src/biotite/structure/io/pdb/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb320creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt321copying src/biotite/structure/io/pdbqt/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt322copying src/biotite/structure/io/pdbqt/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt323copying src/biotite/structure/io/pdbqt/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt324creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx325copying src/biotite/structure/io/pdbx/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx326copying src/biotite/structure/io/pdbx/bcif.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx327copying src/biotite/structure/io/pdbx/cif.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx328copying src/biotite/structure/io/pdbx/component.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx329copying src/biotite/structure/io/pdbx/compress.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx330copying src/biotite/structure/io/pdbx/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx331copying src/biotite/structure/io/pdbx/encoding.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx332running egg_info333writing src/biotite.egg-info/PKG-INFO334writing dependency_links to src/biotite.egg-info/dependency_links.txt335writing requirements to src/biotite.egg-info/requires.txt336writing top-level names to src/biotite.egg-info/top_level.txt337/nix/store/7kj6l70lbkj7b1p9f6xlpbb30ali0m59-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.338 return get_active_overrides().subprocess_timeout339reading manifest file 'src/biotite.egg-info/SOURCES.txt'340reading manifest template 'MANIFEST.in'341warning: no files found matching 'src/biotite/structure/info/components.bcif'342adding license file 'LICENSE.rst'343writing manifest file 'src/biotite.egg-info/SOURCES.txt'344creating build/lib.linux-x86_64-cpython-314/rust345copying src/rust/lib.rs -> build/lib.linux-x86_64-cpython-314/rust346copying src/rust/util.rs -> build/lib.linux-x86_64-cpython-314/rust347copying src/biotite/py.typed -> build/lib.linux-x86_64-cpython-314/biotite348creating build/lib.linux-x86_64-cpython-314/rust/sequence349copying src/rust/sequence/codec.rs -> build/lib.linux-x86_64-cpython-314/rust/sequence350copying src/rust/sequence/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/sequence351creating build/lib.linux-x86_64-cpython-314/rust/structure352copying src/rust/structure/bonds.rs -> build/lib.linux-x86_64-cpython-314/rust/structure353copying src/rust/structure/celllist.rs -> build/lib.linux-x86_64-cpython-314/rust/structure354copying src/rust/structure/charges.rs -> build/lib.linux-x86_64-cpython-314/rust/structure355copying src/rust/structure/connect.rs -> build/lib.linux-x86_64-cpython-314/rust/structure356copying src/rust/structure/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure357copying src/rust/structure/sasa.rs -> build/lib.linux-x86_64-cpython-314/rust/structure358copying src/rust/structure/util.rs -> build/lib.linux-x86_64-cpython-314/rust/structure359creating build/lib.linux-x86_64-cpython-314/rust/structure/io360copying src/rust/structure/io/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io361creating build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb362copying src/rust/structure/io/pdb/file.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb363copying src/rust/structure/io/pdb/hybrid36.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb364copying src/rust/structure/io/pdb/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb365creating build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx366copying src/rust/structure/io/pdbx/encoding.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx367copying src/rust/structure/io/pdbx/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx368copying src/biotite/sequence/codon_tables.txt -> build/lib.linux-x86_64-cpython-314/biotite/sequence369copying src/biotite/structure/atoms.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure370copying src/biotite/structure/bonds.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure371copying src/biotite/structure/celllist.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure372copying src/biotite/structure/spacegroups.json -> build/lib.linux-x86_64-cpython-314/biotite/structure373copying src/biotite/structure/spacegroups.license -> build/lib.linux-x86_64-cpython-314/biotite/structure374copying src/biotite/sequence/align/banded.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align375copying src/biotite/sequence/align/banded.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align376copying src/biotite/sequence/align/banded.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align377copying src/biotite/sequence/align/kmeralphabet.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align378copying src/biotite/sequence/align/kmeralphabet.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align379copying src/biotite/sequence/align/kmeralphabet.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align380copying src/biotite/sequence/align/kmersimilarity.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align381copying src/biotite/sequence/align/kmersimilarity.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align382copying src/biotite/sequence/align/kmersimilarity.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align383copying src/biotite/sequence/align/kmertable.cpp -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align384copying src/biotite/sequence/align/kmertable.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align385copying src/biotite/sequence/align/kmertable.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align386copying src/biotite/sequence/align/localgapped.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align387copying src/biotite/sequence/align/localgapped.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align388copying src/biotite/sequence/align/localgapped.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align389copying src/biotite/sequence/align/localungapped.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align390copying src/biotite/sequence/align/localungapped.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align391copying src/biotite/sequence/align/localungapped.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align392copying src/biotite/sequence/align/multiple.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align393copying src/biotite/sequence/align/multiple.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align394copying src/biotite/sequence/align/multiple.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align395copying src/biotite/sequence/align/pairwise.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align396copying src/biotite/sequence/align/pairwise.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align397copying src/biotite/sequence/align/pairwise.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align398copying src/biotite/sequence/align/permutation.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align399copying src/biotite/sequence/align/permutation.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align400copying src/biotite/sequence/align/permutation.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align401copying src/biotite/sequence/align/primes.txt -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align402copying src/biotite/sequence/align/selector.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align403copying src/biotite/sequence/align/selector.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align404copying src/biotite/sequence/align/selector.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align405copying src/biotite/sequence/align/tracetable.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align406copying src/biotite/sequence/align/tracetable.pxd -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align407copying src/biotite/sequence/align/tracetable.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align408copying src/biotite/sequence/phylo/nj.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo409copying src/biotite/sequence/phylo/nj.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo410copying src/biotite/sequence/phylo/nj.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo411copying src/biotite/sequence/phylo/tree.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo412copying src/biotite/sequence/phylo/tree.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo413copying src/biotite/sequence/phylo/tree.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo414copying src/biotite/sequence/phylo/upgma.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo415copying src/biotite/sequence/phylo/upgma.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo416copying src/biotite/sequence/phylo/upgma.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo417creating build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data418copying src/biotite/sequence/align/matrix_data/3Di.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data419copying src/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data420copying src/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data421copying src/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data422copying src/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data423copying src/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data424copying src/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data425copying src/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data426copying src/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data427copying src/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data428copying src/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data429copying src/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data430copying src/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data431copying src/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data432copying src/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data433copying src/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data434copying src/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data435copying src/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data436copying src/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data437copying src/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data438copying src/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data439copying src/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data440copying src/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data441copying src/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data442copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data443copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data444copying src/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data445copying src/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data446copying src/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data447copying src/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data448copying src/biotite/sequence/align/matrix_data/GONNET.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data449copying src/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data450copying src/biotite/sequence/align/matrix_data/MATCH.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data451copying src/biotite/sequence/align/matrix_data/NUC.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data452copying src/biotite/sequence/align/matrix_data/PAM10.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data453copying src/biotite/sequence/align/matrix_data/PAM100.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data454copying src/biotite/sequence/align/matrix_data/PAM110.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data455copying src/biotite/sequence/align/matrix_data/PAM120.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data456copying src/biotite/sequence/align/matrix_data/PAM130.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data457copying src/biotite/sequence/align/matrix_data/PAM140.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data458copying src/biotite/sequence/align/matrix_data/PAM150.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data459copying src/biotite/sequence/align/matrix_data/PAM160.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data460copying src/biotite/sequence/align/matrix_data/PAM170.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data461copying src/biotite/sequence/align/matrix_data/PAM180.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data462copying src/biotite/sequence/align/matrix_data/PAM190.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data463copying src/biotite/sequence/align/matrix_data/PAM20.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data464copying src/biotite/sequence/align/matrix_data/PAM200.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data465copying src/biotite/sequence/align/matrix_data/PAM210.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data466copying src/biotite/sequence/align/matrix_data/PAM220.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data467copying src/biotite/sequence/align/matrix_data/PAM230.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data468copying src/biotite/sequence/align/matrix_data/PAM240.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data469copying src/biotite/sequence/align/matrix_data/PAM250.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data470copying src/biotite/sequence/align/matrix_data/PAM260.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data471copying src/biotite/sequence/align/matrix_data/PAM270.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data472copying src/biotite/sequence/align/matrix_data/PAM280.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data473copying src/biotite/sequence/align/matrix_data/PAM290.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data474copying src/biotite/sequence/align/matrix_data/PAM30.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data475copying src/biotite/sequence/align/matrix_data/PAM300.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data476copying src/biotite/sequence/align/matrix_data/PAM310.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data477copying src/biotite/sequence/align/matrix_data/PAM320.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data478copying src/biotite/sequence/align/matrix_data/PAM330.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data479copying src/biotite/sequence/align/matrix_data/PAM340.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data480copying src/biotite/sequence/align/matrix_data/PAM350.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data481copying src/biotite/sequence/align/matrix_data/PAM360.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data482copying src/biotite/sequence/align/matrix_data/PAM370.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data483copying src/biotite/sequence/align/matrix_data/PAM380.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data484copying src/biotite/sequence/align/matrix_data/PAM390.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data485copying src/biotite/sequence/align/matrix_data/PAM40.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data486copying src/biotite/sequence/align/matrix_data/PAM400.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data487copying src/biotite/sequence/align/matrix_data/PAM410.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data488copying src/biotite/sequence/align/matrix_data/PAM420.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data489copying src/biotite/sequence/align/matrix_data/PAM430.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data490copying src/biotite/sequence/align/matrix_data/PAM440.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data491copying src/biotite/sequence/align/matrix_data/PAM450.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data492copying src/biotite/sequence/align/matrix_data/PAM460.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data493copying src/biotite/sequence/align/matrix_data/PAM470.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data494copying src/biotite/sequence/align/matrix_data/PAM480.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data495copying src/biotite/sequence/align/matrix_data/PAM490.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data496copying src/biotite/sequence/align/matrix_data/PAM50.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data497copying src/biotite/sequence/align/matrix_data/PAM500.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data498copying src/biotite/sequence/align/matrix_data/PAM60.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data499copying src/biotite/sequence/align/matrix_data/PAM70.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data500copying src/biotite/sequence/align/matrix_data/PAM80.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data501copying src/biotite/sequence/align/matrix_data/PAM90.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data502copying src/biotite/sequence/align/matrix_data/PB.license -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data503copying src/biotite/sequence/align/matrix_data/PB.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data504copying src/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data505copying src/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data506copying src/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data507copying src/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data508copying src/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data509copying src/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data510creating build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes511copying src/biotite/sequence/graphics/color_schemes/3di_flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes512copying src/biotite/sequence/graphics/color_schemes/autumn.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes513copying src/biotite/sequence/graphics/color_schemes/blossom.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes514copying src/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes515copying src/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes516copying src/biotite/sequence/graphics/color_schemes/flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes517copying src/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes518copying src/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes519copying src/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes520copying src/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes521copying src/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes522copying src/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes523copying src/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes524copying src/biotite/sequence/graphics/color_schemes/ocean.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes525copying src/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes526copying src/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes527copying src/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes528copying src/biotite/sequence/graphics/color_schemes/spring.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes529copying src/biotite/sequence/graphics/color_schemes/sunset.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes530copying src/biotite/sequence/graphics/color_schemes/wither.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes531copying src/biotite/structure/alphabet/encoder_weights_3di.kerasify -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet532copying src/biotite/structure/alphabet/pb.license -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet533copying src/biotite/structure/info/atom_masses.json -> build/lib.linux-x86_64-cpython-314/biotite/structure/info534running build_ext535building 'biotite.sequence.align.banded' extension536creating build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align537gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/banded.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/banded.o538gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/banded.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so539building 'biotite.sequence.align.kmeralphabet' extension540gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmeralphabet.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmeralphabet.o541In file included from src/biotite/sequence/align/kmeralphabet.c:1401:542In function ‘__Pyx_XCLEAR_MEMVIEW’,543 inlined from ‘__pyx_pf_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_20_split’ at src/biotite/sequence/align/kmeralphabet.c:23866:3,544 inlined from ‘__pyx_pw_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_21_split’ at src/biotite/sequence/align/kmeralphabet.c:23574:13:545src/biotite/sequence/align/kmeralphabet.c:1417:46: warning: ‘__atomic_fetch_sub_4’ writing 4 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]546 1417 | #define __pyx_atomic_decr_acq_rel(value) atomic_fetch_sub_explicit(value, 1, memory_order_acq_rel)547 | ^~~~~~~~~~~~~~~~~~~~~~~~~548src/biotite/sequence/align/kmeralphabet.c:1628:13: note: in expansion of macro ‘__pyx_atomic_decr_acq_rel’549 1628 | __pyx_atomic_decr_acq_rel(__pyx_get_slice_count_pointer(memview))550 | ^~~~~~~~~~~~~~~~~~~~~~~~~551src/biotite/sequence/align/kmeralphabet.c:42072:29: note: in expansion of macro ‘__pyx_sub_acquisition_count’55242072 | old_acquisition_count = __pyx_sub_acquisition_count(memview);553 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~554In function ‘__pyx_pw_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_21_split’:555cc1: note: destination object is likely at address zero556gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmeralphabet.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so557building 'biotite.sequence.align.kmersimilarity' extension558gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmersimilarity.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmersimilarity.o559gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmersimilarity.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so560building 'biotite.sequence.align.kmertable' extension561g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmertable.cpp -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmertable.o562g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmertable.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so563building 'biotite.sequence.align.localgapped' extension564gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/localgapped.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localgapped.o565gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localgapped.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so566building 'biotite.sequence.align.localungapped' extension567gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/localungapped.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localungapped.o568gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localungapped.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so569building 'biotite.sequence.align.multiple' extension570gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/multiple.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/multiple.o571gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/multiple.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so572building 'biotite.sequence.align.pairwise' extension573gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/pairwise.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/pairwise.o574gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/pairwise.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so575building 'biotite.sequence.align.permutation' extension576gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/permutation.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/permutation.o577gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/permutation.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so578building 'biotite.sequence.align.selector' extension579gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/selector.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/selector.o580gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/selector.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so581building 'biotite.sequence.align.tracetable' extension582gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/tracetable.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/tracetable.o583gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/tracetable.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so584building 'biotite.sequence.phylo.nj' extension585creating build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo586gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/nj.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/nj.o587gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/nj.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so588building 'biotite.sequence.phylo.tree' extension589gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/tree.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/tree.o590gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/tree.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so591building 'biotite.sequence.phylo.upgma' extension592gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/upgma.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/upgma.o593gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/upgma.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so594running build_rust595cargo rustc --lib --message-format=json-render-diagnostics --manifest-path Cargo.toml --release -v --features pyo3/extension-module --crate-type cdylib --target x86_64-unknown-linux-gnu596warning: failed to save last-use data597This may prevent cargo from accurately tracking what is being used in its global cache. This information is used for automatically removing unused data in the cache.598599unable to open database file: /homeless-shelter/.cargo/.global-cache600601Caused by:602 Error code 14: unable to open database file603 Compiling target-lexicon v0.13.5604 Compiling autocfg v1.5.1605 Compiling proc-macro2 v1.0.107606 Compiling unicode-ident v1.0.24607 Compiling quote v1.0.47608 Compiling libc v0.2.189609 Compiling heck v0.5.0610 Compiling rawpointer v0.2.1611 Compiling once_cell v1.21.4612 Compiling unindent v0.2.4613 Compiling indoc v2.0.7614 Compiling rustc-hash v2.1.3615 Compiling either v1.18.0616 Compiling smallvec v1.16.0617 Running `rustc --crate-name build_script_build --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=unexpected_cfgs --check-cfg 'cfg(feature, values("rust_1_40", "cargo-clippy"))' -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arch_z80", "arch_zkasm", "default", "serde", "serde_support", "std"))' -C metadata=12ed681be214ce39 -C extra-filename=-2ffe4a44fd514c8f --out-dir /build/source/target/release/build/target-lexicon-2ffe4a44fd514c8f -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`618 Running `rustc --crate-name autocfg --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/autocfg-1.5.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=009e1ae2d71cba2a -C extra-filename=-b29aa6b532941b60 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`619 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=aee344725420ad49 -C extra-filename=-3da98953dfec2a54 --out-dir /build/source/target/release/build/proc-macro2-3da98953dfec2a54 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`620 Running `rustc --crate-name unicode_ident --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/unicode-ident-1.0.24/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=35613a9a50cfa8d0 -C extra-filename=-24b354c2597e0ab2 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`621 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "proc-macro"))' -C metadata=4ddd3bf2da6e355d -C extra-filename=-6d6617ed9b73626d --out-dir /build/source/target/release/build/quote-6d6617ed9b73626d -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`622 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.189/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --allow=unused_qualifications '--warn=clippy::unnecessary_semicolon' '--allow=clippy::unnecessary_cast' '--warn=clippy::ptr_as_ptr' '--allow=clippy::non_minimal_cfg' '--allow=clippy::missing_safety_doc' '--warn=clippy::map_unwrap_or' '--warn=clippy::manual_assert' '--allow=clippy::identity_op' '--warn=clippy::explicit_iter_loop' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=e66e84e78d5314fc -C extra-filename=-af9c681df7748733 --out-dir /build/source/target/release/build/libc-af9c681df7748733 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`623 Running `rustc --crate-name rawpointer --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/rawpointer-0.2.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=f8859574040205e8 -C extra-filename=-5013ff441e71e220 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`624 Running `rustc --crate-name heck --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/heck-0.5.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=207115b67ce9596d -C extra-filename=-2b93fc40042d2031 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`625 Running `rustc --crate-name once_cell --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/once_cell-1.21.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="alloc"' --cfg 'feature="default"' --cfg 'feature="race"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc", "atomic-polyfill", "critical-section", "default", "parking_lot", "portable-atomic", "race", "std", "unstable"))' -C metadata=0be16e6eaee9b76a -C extra-filename=-cda02b276aeda687 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`626 Running `rustc --crate-name indoc --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/indoc-2.0.7/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=ce88fdfe66d70257 -C extra-filename=-13e7c5fbcec73ab6 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro --cap-lints allow`627 Running `rustc --crate-name unindent --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/unindent-0.2.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=932d72a21484907d -C extra-filename=-bc062914628acc6a --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`628 Running `rustc --crate-name rustc_hash --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/rustc-hash-2.1.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "rand", "std"))' -C metadata=42c9ffc4276c6a11 -C extra-filename=-14db18c40b41c22e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`629 Running `rustc --crate-name either --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/either-1.18.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="std"' --cfg 'feature="use_std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "serde", "std", "use_std"))' -C metadata=3ebe30e84352c613 -C extra-filename=-4981e6c25c0a4b74 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`630 Running `rustc --crate-name smallvec --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/smallvec-1.16.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arbitrary", "bincode", "const_generics", "const_new", "drain_filter", "drain_keep_rest", "impl_bincode", "malloc_size_of", "may_dangle", "serde", "specialization", "union", "unty", "write"))' -C metadata=91234725c9db0f5e -C extra-filename=-4a125e014d925d37 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`631 Compiling itertools v0.14.0632 Running `rustc --crate-name itertools --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/itertools-0.14.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="use_alloc"' --cfg 'feature="use_std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "use_alloc", "use_std"))' -C metadata=9e52dc3c802f1ff7 -C extra-filename=-b679da25cb89c966 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern either=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libeither-4981e6c25c0a4b74.rmeta --cap-lints allow -Cforce-frame-pointers=yes`633 Running `/build/source/target/release/build/quote-6d6617ed9b73626d/build-script-build`634 Compiling num-traits v0.2.19635 Compiling memoffset v0.9.1636 Compiling matrixmultiply v0.3.11637 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="i128"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "libm", "std"))' -C metadata=94a08a0b43272862 -C extra-filename=-61bc2454960b47dc --out-dir /build/source/target/release/build/num-traits-61bc2454960b47dc -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-b29aa6b532941b60.rlib --cap-lints allow`638 Running `rustc --crate-name build_script_build --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "unstable_const", "unstable_offset_of"))' -C metadata=20b18284fa533a6a -C extra-filename=-79c46efb3ba21a25 --out-dir /build/source/target/release/build/memoffset-79c46efb3ba21a25 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-b29aa6b532941b60.rlib --cap-lints allow`639 Running `rustc --crate-name build_script_build --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="cgemm"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("avx512", "cgemm", "constconf", "default", "num_cpus", "once_cell", "std", "thread-tree", "threading"))' -C metadata=3478fccfe3ed330d -C extra-filename=-2e25874a8497635a --out-dir /build/source/target/release/build/matrixmultiply-2e25874a8497635a -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-b29aa6b532941b60.rlib --cap-lints allow`640 Running `/build/source/target/release/build/proc-macro2-3da98953dfec2a54/build-script-build`641 Running `/build/source/target/release/build/libc-af9c681df7748733/build-script-build`642 Running `rustc --crate-name libc --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.189/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --allow=unused_qualifications '--warn=clippy::unnecessary_semicolon' '--allow=clippy::unnecessary_cast' '--warn=clippy::ptr_as_ptr' '--allow=clippy::non_minimal_cfg' '--allow=clippy::missing_safety_doc' '--warn=clippy::map_unwrap_or' '--warn=clippy::manual_assert' '--allow=clippy::identity_op' '--warn=clippy::explicit_iter_loop' --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=816559f477bcb06a -C extra-filename=-2e4dae809765e2a7 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg freebsd12 --check-cfg 'cfg(emscripten_old_stat_abi)' --check-cfg 'cfg(espidf_picolibc)' --check-cfg 'cfg(espidf_time32)' --check-cfg 'cfg(freebsd10)' --check-cfg 'cfg(freebsd11)' --check-cfg 'cfg(freebsd12)' --check-cfg 'cfg(freebsd13)' --check-cfg 'cfg(freebsd14)' --check-cfg 'cfg(freebsd15)' --check-cfg 'cfg(gnu_file_offset_bits64)' --check-cfg 'cfg(gnu_time_bits64)' --check-cfg 'cfg(libc_deny_warnings)' --check-cfg 'cfg(linux_time_bits64)' --check-cfg 'cfg(musl_v1_2_3)' --check-cfg 'cfg(musl32_time64)' --check-cfg 'cfg(musl_redir_time64)' --check-cfg 'cfg(vxworks_lt_25_09)' --check-cfg 'cfg(libc_pauthtest)' --check-cfg 'cfg(target_os,values("switch","aix","ohos","hurd","rtems","visionos","nuttx","cygwin","qurt","qnx"))' --check-cfg 'cfg(target_env,values("illumos","wasi","aix","ohos","nto71_iosock"))' --check-cfg 'cfg(target_arch,values("loongarch64","mips32r6","mips64r6","csky"))'`643 Running `/build/source/target/release/build/target-lexicon-2ffe4a44fd514c8f/build-script-build`644 Running `/build/source/target/release/build/num-traits-61bc2454960b47dc/build-script-build`645 Running `rustc --crate-name proc_macro2 --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=6b49054ba469ee61 -C extra-filename=-4a62a3ccf1789728 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern unicode_ident=/build/source/target/release/deps/libunicode_ident-24b354c2597e0ab2.rmeta --cap-lints allow --cfg wrap_proc_macro --cfg proc_macro_span_location --cfg proc_macro_span_file --check-cfg 'cfg(fuzzing)' --check-cfg 'cfg(no_is_available)' --check-cfg 'cfg(no_literal_byte_character)' --check-cfg 'cfg(no_literal_c_string)' --check-cfg 'cfg(no_source_text)' --check-cfg 'cfg(proc_macro_span)' --check-cfg 'cfg(proc_macro_span_file)' --check-cfg 'cfg(proc_macro_span_location)' --check-cfg 'cfg(procmacro2_backtrace)' --check-cfg 'cfg(procmacro2_build_probe)' --check-cfg 'cfg(procmacro2_nightly_testing)' --check-cfg 'cfg(procmacro2_semver_exempt)' --check-cfg 'cfg(randomize_layout)' --check-cfg 'cfg(span_locations)' --check-cfg 'cfg(super_unstable)' --check-cfg 'cfg(wrap_proc_macro)'`646 Running `/build/source/target/release/build/memoffset-79c46efb3ba21a25/build-script-build`647 Running `rustc --crate-name target_lexicon --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=unexpected_cfgs --check-cfg 'cfg(feature, values("rust_1_40", "cargo-clippy"))' -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arch_z80", "arch_zkasm", "default", "serde", "serde_support", "std"))' -C metadata=ac82e2696b02ebed -C extra-filename=-d28e530e8a41b8c6 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow --cfg 'feature="rust_1_40"'`648 Running `/build/source/target/release/build/matrixmultiply-2e25874a8497635a/build-script-build`649 Running `rustc --crate-name memoffset --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "unstable_const", "unstable_offset_of"))' -C metadata=f86acfe0a5154d02 -C extra-filename=-88412bbb96562e6e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg tuple_ty --cfg allow_clippy --cfg maybe_uninit --cfg doctests --cfg raw_ref_macros --cfg stable_const --cfg stable_offset_of`650 Running `rustc --crate-name matrixmultiply --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="cgemm"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("avx512", "cgemm", "constconf", "default", "num_cpus", "once_cell", "std", "thread-tree", "threading"))' -C metadata=39e8279a7a9becea -C extra-filename=-a9cdce1762729e6e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern rawpointer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librawpointer-5013ff441e71e220.rmeta --cap-lints allow -Cforce-frame-pointers=yes --check-cfg 'cfg(has_avx512)'`651 Running `rustc --crate-name num_traits --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="i128"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "libm", "std"))' -C metadata=c5406f59402373b3 -C extra-filename=-14f9c1453d273c9f --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg has_total_cmp --check-cfg 'cfg(has_total_cmp)'`652 Compiling pyo3-build-config v0.27.2653 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="resolve-config"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib", "resolve-config"))' -C metadata=02c912f8fa3f2de1 -C extra-filename=-25c9889f6010bcb3 --out-dir /build/source/target/release/build/pyo3-build-config-25c9889f6010bcb3 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern target_lexicon=/build/source/target/release/deps/libtarget_lexicon-d28e530e8a41b8c6.rlib --cap-lints allow`654 Running `rustc --crate-name quote --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "proc-macro"))' -C metadata=a36d2eb9ae0469ea -C extra-filename=-0de86e93dccf4fcc --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-4a62a3ccf1789728.rmeta --cap-lints allow --check-cfg 'cfg(no_diagnostic_namespace)'`655 Compiling syn v2.0.119656 Running `rustc --crate-name syn --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/syn-2.0.119/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=3b1da4d2353108c8 -C extra-filename=-419c2c0992ffe37c --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-4a62a3ccf1789728.rmeta --extern quote=/build/source/target/release/deps/libquote-0de86e93dccf4fcc.rmeta --extern unicode_ident=/build/source/target/release/deps/libunicode_ident-24b354c2597e0ab2.rmeta --cap-lints allow`657 Running `/build/source/target/release/build/pyo3-build-config-25c9889f6010bcb3/build-script-build`658 Running `rustc --crate-name pyo3_build_config --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="resolve-config"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib", "resolve-config"))' -C metadata=21db1d86bebef871 -C extra-filename=-494d95719802b2ea --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern target_lexicon=/build/source/target/release/deps/libtarget_lexicon-d28e530e8a41b8c6.rmeta --cap-lints allow`659 Compiling num-integer v0.1.47660 Compiling num-complex v0.4.6661 Running `rustc --crate-name num_integer --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-integer-0.1.47/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "std"))' -C metadata=110b2c8a0118aa3d -C extra-filename=-f46f7d1e53d8067e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rmeta --cap-lints allow -Cforce-frame-pointers=yes`662 Running `rustc --crate-name num_complex --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-complex-0.4.6/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("bytecheck", "bytemuck", "default", "libm", "rand", "rkyv", "serde", "std"))' -C metadata=28d6463cf93986c0 -C extra-filename=-9e07f84062acf10d --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rmeta --cap-lints allow -Cforce-frame-pointers=yes`663 Compiling pyo3-macros-backend v0.27.2664 Compiling pyo3-ffi v0.27.2665 Compiling pyo3 v0.27.2666 Compiling numpy v0.27.1667 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=41ff6fe5da9c5c73 -C extra-filename=-16dadac3361ab4f5 --out-dir /build/source/target/release/build/pyo3-macros-backend-16dadac3361ab4f5 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rlib --cap-lints allow`668 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no '--allow=clippy::needless-lifetimes' --deny=elided-lifetimes-in-paths -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("half", "nalgebra"))' -C metadata=5cc23885212904b8 -C extra-filename=-8cffdc948ff3e233 --out-dir /build/source/target/release/build/numpy-8cffdc948ff3e233 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rlib --cap-lints allow`669 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib"))' -C metadata=642d46dfef992436 -C extra-filename=-0bfa3861444bd980 --out-dir /build/source/target/release/build/pyo3-ffi-0bfa3861444bd980 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rlib --cap-lints allow`670 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="indoc"' --cfg 'feature="macros"' --cfg 'feature="pyo3-macros"' --cfg 'feature="unindent"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "anyhow", "arc_lock", "auto-initialize", "bigdecimal", "bytes", "chrono", "chrono-local", "chrono-tz", "default", "either", "experimental-async", "experimental-inspect", "extension-module", "eyre", "full", "generate-import-lib", "hashbrown", "indexmap", "indoc", "inventory", "jiff-02", "lock_api", "macros", "multiple-pymethods", "nightly", "num-bigint", "num-complex", "num-rational", "ordered-float", "parking_lot", "py-clone", "pyo3-macros", "rust_decimal", "serde", "smallvec", "time", "unindent", "uuid"))' -C metadata=b22fd0aaeb1bf675 -C extra-filename=-105684b7d11f910e --out-dir /build/source/target/release/build/pyo3-105684b7d11f910e -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rlib --cap-lints allow`671 Compiling ndarray v0.17.2672 Running `rustc --crate-name ndarray --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/ndarray-0.17.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("approx", "blas", "default", "matrixmultiply-threading", "portable-atomic-critical-section", "rayon", "serde", "std"))' -C metadata=07d838f672d94a9a -C extra-filename=-10d2c16c579a185c --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern matrixmultiply=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libmatrixmultiply-a9cdce1762729e6e.rmeta --extern num_complex=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_complex-9e07f84062acf10d.rmeta --extern num_integer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_integer-f46f7d1e53d8067e.rmeta --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rmeta --extern rawpointer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librawpointer-5013ff441e71e220.rmeta --cap-lints allow -Cforce-frame-pointers=yes`673 Running `/build/source/target/release/build/pyo3-macros-backend-16dadac3361ab4f5/build-script-build`674 Running `/build/source/target/release/build/numpy-8cffdc948ff3e233/build-script-build`675 Running `/build/source/target/release/build/pyo3-ffi-0bfa3861444bd980/build-script-build`676 Running `/build/source/target/release/build/pyo3-105684b7d11f910e/build-script-build`677 Running `rustc --crate-name pyo3_ffi --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --cfg 'feature="default"' --cfg 'feature="extension-module"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib"))' -C metadata=639d0be0407b0b93 -C extra-filename=-97f75393788077b9 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-2e4dae809765e2a7.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`678 Running `rustc --crate-name pyo3_macros_backend --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=81c26922f5560ed7 -C extra-filename=-d442d7f223cba3ae --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern heck=/build/source/target/release/deps/libheck-2b93fc40042d2031.rmeta --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-4a62a3ccf1789728.rmeta --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rmeta --extern quote=/build/source/target/release/deps/libquote-0de86e93dccf4fcc.rmeta --extern syn=/build/source/target/release/deps/libsyn-419c2c0992ffe37c.rmeta --cap-lints allow --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`679 Compiling pyo3-macros v0.27.2680 Running `rustc --crate-name pyo3_macros --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect", "multiple-pymethods"))' -C metadata=22c98453d41d0bcd -C extra-filename=-1b9dc779c9b5c236 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-4a62a3ccf1789728.rlib --extern pyo3_macros_backend=/build/source/target/release/deps/libpyo3_macros_backend-d442d7f223cba3ae.rlib --extern quote=/build/source/target/release/deps/libquote-0de86e93dccf4fcc.rlib --extern syn=/build/source/target/release/deps/libsyn-419c2c0992ffe37c.rlib --extern proc_macro --cap-lints allow`681 Running `rustc --crate-name pyo3 --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="indoc"' --cfg 'feature="macros"' --cfg 'feature="pyo3-macros"' --cfg 'feature="unindent"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "anyhow", "arc_lock", "auto-initialize", "bigdecimal", "bytes", "chrono", "chrono-local", "chrono-tz", "default", "either", "experimental-async", "experimental-inspect", "extension-module", "eyre", "full", "generate-import-lib", "hashbrown", "indexmap", "indoc", "inventory", "jiff-02", "lock_api", "macros", "multiple-pymethods", "nightly", "num-bigint", "num-complex", "num-rational", "ordered-float", "parking_lot", "py-clone", "pyo3-macros", "rust_decimal", "serde", "smallvec", "time", "unindent", "uuid"))' -C metadata=13953ada9c66130b -C extra-filename=-12c139fc4f8acd0e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern indoc=/build/source/target/release/deps/libindoc-13e7c5fbcec73ab6.so --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-2e4dae809765e2a7.rmeta --extern memoffset=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libmemoffset-88412bbb96562e6e.rmeta --extern once_cell=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libonce_cell-cda02b276aeda687.rmeta --extern pyo3_ffi=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3_ffi-97f75393788077b9.rmeta --extern pyo3_macros=/build/source/target/release/deps/libpyo3_macros-1b9dc779c9b5c236.so --extern unindent=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libunindent-bc062914628acc6a.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`682 Running `rustc --crate-name numpy --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no '--allow=clippy::needless-lifetimes' --deny=elided-lifetimes-in-paths --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("half", "nalgebra"))' -C metadata=f2a6998ad9c639a9 -C extra-filename=-237ca85cfc32a3ef --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-2e4dae809765e2a7.rmeta --extern ndarray=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libndarray-10d2c16c579a185c.rmeta --extern num_complex=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_complex-9e07f84062acf10d.rmeta --extern num_integer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_integer-f46f7d1e53d8067e.rmeta --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rmeta --extern pyo3=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3-12c139fc4f8acd0e.rmeta --extern rustc_hash=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librustc_hash-14db18c40b41c22e.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)'`683 Compiling biotite_rust v0.0.0 (/build/source)684 Running `rustc --crate-name rust --edition=2018 src/rust/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type cdylib --emit=dep-info,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=9d98aacaf27e414f --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern itertools=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libitertools-b679da25cb89c966.rlib --extern ndarray=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libndarray-10d2c16c579a185c.rlib --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rlib --extern numpy=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnumpy-237ca85cfc32a3ef.rlib --extern pyo3=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3-12c139fc4f8acd0e.rlib --extern smallvec=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libsmallvec-4a125e014d925d37.rlib -Cforce-frame-pointers=yes`685 Finished `release` profile [optimized] target(s) in 14.12s686Copying rust artifact from target/x86_64-unknown-linux-gnu/release/librust.so to build/lib.linux-x86_64-cpython-314/biotite/rust.cpython-314-x86_64-linux-gnu.so687installing to build/bdist.linux-x86_64/wheel688running install689running install_lib690creating build/bdist.linux-x86_64/wheel691creating build/bdist.linux-x86_64/wheel/biotite692copying build/lib.linux-x86_64-cpython-314/biotite/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite693copying build/lib.linux-x86_64-cpython-314/biotite/copyable.py -> build/bdist.linux-x86_64/wheel/./biotite694copying build/lib.linux-x86_64-cpython-314/biotite/file.py -> build/bdist.linux-x86_64/wheel/./biotite695copying build/lib.linux-x86_64-cpython-314/biotite/setup_ccd.py -> build/bdist.linux-x86_64/wheel/./biotite696copying build/lib.linux-x86_64-cpython-314/biotite/typing.py -> build/bdist.linux-x86_64/wheel/./biotite697copying build/lib.linux-x86_64-cpython-314/biotite/visualize.py -> build/bdist.linux-x86_64/wheel/./biotite698copying build/lib.linux-x86_64-cpython-314/biotite/version.py -> build/bdist.linux-x86_64/wheel/./biotite699creating build/bdist.linux-x86_64/wheel/biotite/application700copying build/lib.linux-x86_64-cpython-314/biotite/application/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application701copying build/lib.linux-x86_64-cpython-314/biotite/application/application.py -> build/bdist.linux-x86_64/wheel/./biotite/application702copying build/lib.linux-x86_64-cpython-314/biotite/application/localapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application703copying build/lib.linux-x86_64-cpython-314/biotite/application/msaapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application704copying build/lib.linux-x86_64-cpython-314/biotite/application/util.py -> build/bdist.linux-x86_64/wheel/./biotite/application705copying build/lib.linux-x86_64-cpython-314/biotite/application/webapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application706creating build/bdist.linux-x86_64/wheel/biotite/application/autodock707copying build/lib.linux-x86_64-cpython-314/biotite/application/autodock/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/autodock708copying build/lib.linux-x86_64-cpython-314/biotite/application/autodock/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/autodock709creating build/bdist.linux-x86_64/wheel/biotite/application/blast710copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast711copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast712copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/webapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast713creating build/bdist.linux-x86_64/wheel/biotite/application/clustalo714copying build/lib.linux-x86_64-cpython-314/biotite/application/clustalo/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/clustalo715copying build/lib.linux-x86_64-cpython-314/biotite/application/clustalo/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/clustalo716creating build/bdist.linux-x86_64/wheel/biotite/application/dssp717copying build/lib.linux-x86_64-cpython-314/biotite/application/dssp/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/dssp718copying build/lib.linux-x86_64-cpython-314/biotite/application/dssp/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/dssp719creating build/bdist.linux-x86_64/wheel/biotite/application/mafft720copying build/lib.linux-x86_64-cpython-314/biotite/application/mafft/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/mafft721copying build/lib.linux-x86_64-cpython-314/biotite/application/mafft/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/mafft722creating build/bdist.linux-x86_64/wheel/biotite/application/muscle723copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle724copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/app3.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle725copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/app5.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle726creating build/bdist.linux-x86_64/wheel/biotite/application/sra727copying build/lib.linux-x86_64-cpython-314/biotite/application/sra/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/sra728copying build/lib.linux-x86_64-cpython-314/biotite/application/sra/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/sra729creating build/bdist.linux-x86_64/wheel/biotite/application/tantan730copying build/lib.linux-x86_64-cpython-314/biotite/application/tantan/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/tantan731copying build/lib.linux-x86_64-cpython-314/biotite/application/tantan/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/tantan732creating build/bdist.linux-x86_64/wheel/biotite/application/viennarna733copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnaalifold.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna734copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnafold.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna735copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnaplot.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna736copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/util.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna737copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna738creating build/bdist.linux-x86_64/wheel/biotite/database739copying build/lib.linux-x86_64-cpython-314/biotite/database/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database740copying build/lib.linux-x86_64-cpython-314/biotite/database/error.py -> build/bdist.linux-x86_64/wheel/./biotite/database741creating build/bdist.linux-x86_64/wheel/biotite/database/afdb742copying build/lib.linux-x86_64-cpython-314/biotite/database/afdb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/afdb743copying build/lib.linux-x86_64-cpython-314/biotite/database/afdb/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/afdb744creating build/bdist.linux-x86_64/wheel/biotite/database/entrez745copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez746copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/check.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez747copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/dbnames.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez748copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez749copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/key.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez750copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez751creating build/bdist.linux-x86_64/wheel/biotite/database/pubchem752copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem753copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem754copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/error.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem755copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem756copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/throttle.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem757creating build/bdist.linux-x86_64/wheel/biotite/database/rcsb758copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb759copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb760copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb761creating build/bdist.linux-x86_64/wheel/biotite/database/uniprot762copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/check.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot763copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot764copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot765copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot766creating build/bdist.linux-x86_64/wheel/biotite/interface767copying build/lib.linux-x86_64-cpython-314/biotite/interface/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface768copying build/lib.linux-x86_64-cpython-314/biotite/interface/version.py -> build/bdist.linux-x86_64/wheel/./biotite/interface769copying build/lib.linux-x86_64-cpython-314/biotite/interface/warning.py -> build/bdist.linux-x86_64/wheel/./biotite/interface770creating build/bdist.linux-x86_64/wheel/biotite/interface/openmm771copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm772copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/state.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm773copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/system.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm774creating build/bdist.linux-x86_64/wheel/biotite/interface/pymol775copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol776copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/cgo.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol777copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol778copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/display.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol779copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/object.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol780copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/shapes.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol781copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/startup.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol782creating build/bdist.linux-x86_64/wheel/biotite/interface/rdkit783copying build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/rdkit784copying build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit/mol.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/rdkit785creating build/bdist.linux-x86_64/wheel/biotite/sequence786copying build/lib.linux-x86_64-cpython-314/biotite/sequence/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence787copying build/lib.linux-x86_64-cpython-314/biotite/sequence/alphabet.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence788copying build/lib.linux-x86_64-cpython-314/biotite/sequence/annotation.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence789copying build/lib.linux-x86_64-cpython-314/biotite/sequence/codon.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence790copying build/lib.linux-x86_64-cpython-314/biotite/sequence/profile.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence791copying build/lib.linux-x86_64-cpython-314/biotite/sequence/search.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence792copying build/lib.linux-x86_64-cpython-314/biotite/sequence/seqtypes.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence793copying build/lib.linux-x86_64-cpython-314/biotite/sequence/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence794creating build/bdist.linux-x86_64/wheel/biotite/sequence/align795copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align796copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align797copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/buckets.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align798copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/cigar.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align799copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align800copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/statistics.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align801copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align802copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align803copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align804copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align805copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align806copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align807copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align808copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align809copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align810copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpp -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align811copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align812copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align813copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align814copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align815copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align816copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align817copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align818copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align819copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align820copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align821copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align822copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align823copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align824copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align825copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align826copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align827copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align828copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/primes.txt -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align829copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align830copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align831copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align832copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align833copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.pxd -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align834copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align835creating build/bdist.linux-x86_64/wheel/biotite/sequence/align/matrix_data836copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/3Di.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data837copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data838copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data839copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data840copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data841copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data842copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data843copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data844copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data845copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data846copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data847copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data848copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data849copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data850copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data851copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data852copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data853copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data854copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data855copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data856copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data857copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data858copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data859copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data860copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data861copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data862copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data863copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data864copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data865copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data866copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/GONNET.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data867copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data868copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/MATCH.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data869copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/NUC.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data870copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM10.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data871copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM100.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data872copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM110.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data873copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM120.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data874copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM130.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data875copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM140.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data876copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM150.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data877copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM160.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data878copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM170.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data879copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM180.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data880copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM190.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data881copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM20.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data882copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM200.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data883copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM210.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data884copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM220.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data885copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM230.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data886copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM240.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data887copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM250.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data888copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM260.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data889copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM270.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data890copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM280.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data891copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM290.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data892copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM30.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data893copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM300.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data894copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM310.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data895copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM320.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data896copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM330.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data897copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM340.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data898copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM350.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data899copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM360.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data900copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM370.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data901copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM380.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data902copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM390.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data903copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM40.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data904copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM400.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data905copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM410.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data906copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM420.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data907copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM430.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data908copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM440.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data909copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM450.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data910copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM460.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data911copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM470.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data912copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM480.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data913copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM490.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data914copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM50.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data915copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM500.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data916copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM60.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data917copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM70.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data918copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM80.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data919copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM90.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data920copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PB.license -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data921copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PB.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data922copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data923copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data924copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data925copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data926copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data927copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data928copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align929copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align930copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align931copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align932copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align933copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align934copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align935copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align936copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align937copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align938copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align939creating build/bdist.linux-x86_64/wheel/biotite/sequence/graphics940copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics941copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics942copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/colorschemes.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics943copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/dendrogram.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics944copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/features.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics945copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/logo.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics946copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/plasmid.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics947creating build/bdist.linux-x86_64/wheel/biotite/sequence/graphics/color_schemes948copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/3di_flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes949copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/autumn.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes950copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/blossom.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes951copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes952copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes953copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes954copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes955copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes956copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes957copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes958copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes959copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes960copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes961copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/ocean.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes962copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes963copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes964copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes965copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/spring.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes966copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/sunset.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes967copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/wither.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes968creating build/bdist.linux-x86_64/wheel/biotite/sequence/io969copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/general.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io970copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io971creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/clustal972copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal973copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal974copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal975creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/fasta976copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta977copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta978copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta979creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/fastq980copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq981copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq982copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq983creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/genbank984copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank985copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/annotation.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank986copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank987copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/metadata.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank988copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank989creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/gff990copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff991copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff992copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff993creating build/bdist.linux-x86_64/wheel/biotite/sequence/phylo994copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo995copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo996copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo997copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo998copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo999copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo1000copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo1001copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo1002copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo1003copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo1004copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo1005copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo1006copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo1007copying build/lib.linux-x86_64-cpython-314/biotite/sequence/codon_tables.txt -> build/bdist.linux-x86_64/wheel/./biotite/sequence1008creating build/bdist.linux-x86_64/wheel/biotite/structure1009copying build/lib.linux-x86_64-cpython-314/biotite/structure/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1010copying build/lib.linux-x86_64-cpython-314/biotite/structure/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1011copying build/lib.linux-x86_64-cpython-314/biotite/structure/basepairs.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1012copying build/lib.linux-x86_64-cpython-314/biotite/structure/bonds.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1013copying build/lib.linux-x86_64-cpython-314/biotite/structure/box.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1014copying build/lib.linux-x86_64-cpython-314/biotite/structure/celllist.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1015copying build/lib.linux-x86_64-cpython-314/biotite/structure/chains.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1016copying build/lib.linux-x86_64-cpython-314/biotite/structure/charges.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1017copying build/lib.linux-x86_64-cpython-314/biotite/structure/compare.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1018copying build/lib.linux-x86_64-cpython-314/biotite/structure/connect.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1019copying build/lib.linux-x86_64-cpython-314/biotite/structure/density.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1020copying build/lib.linux-x86_64-cpython-314/biotite/structure/dotbracket.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1021copying build/lib.linux-x86_64-cpython-314/biotite/structure/error.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1022copying build/lib.linux-x86_64-cpython-314/biotite/structure/filter.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1023copying build/lib.linux-x86_64-cpython-314/biotite/structure/geometry.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1024copying build/lib.linux-x86_64-cpython-314/biotite/structure/hbond.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1025copying build/lib.linux-x86_64-cpython-314/biotite/structure/integrity.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1026copying build/lib.linux-x86_64-cpython-314/biotite/structure/mechanics.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1027copying build/lib.linux-x86_64-cpython-314/biotite/structure/molecules.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1028copying build/lib.linux-x86_64-cpython-314/biotite/structure/pseudoknots.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1029copying build/lib.linux-x86_64-cpython-314/biotite/structure/rdf.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1030copying build/lib.linux-x86_64-cpython-314/biotite/structure/repair.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1031copying build/lib.linux-x86_64-cpython-314/biotite/structure/residues.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1032copying build/lib.linux-x86_64-cpython-314/biotite/structure/rings.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1033copying build/lib.linux-x86_64-cpython-314/biotite/structure/sasa.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1034copying build/lib.linux-x86_64-cpython-314/biotite/structure/segments.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1035copying build/lib.linux-x86_64-cpython-314/biotite/structure/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1036copying build/lib.linux-x86_64-cpython-314/biotite/structure/sse.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1037copying build/lib.linux-x86_64-cpython-314/biotite/structure/tm.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1038copying build/lib.linux-x86_64-cpython-314/biotite/structure/transform.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1039copying build/lib.linux-x86_64-cpython-314/biotite/structure/util.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1040copying build/lib.linux-x86_64-cpython-314/biotite/structure/superimpose.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1041creating build/bdist.linux-x86_64/wheel/biotite/structure/alphabet1042copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1043copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/encoder.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1044copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/i3d.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1045copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/layers.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1046copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/pb.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1047copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/unkerasify.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1048copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/encoder_weights_3di.kerasify -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1049copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/pb.license -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1050creating build/bdist.linux-x86_64/wheel/biotite/structure/graphics1051copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics1052copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/rna.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics1053copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics1054creating build/bdist.linux-x86_64/wheel/biotite/structure/info1055copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1056copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1057copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/bonds.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1058copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/ccd.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1059copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/groups.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1060copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/masses.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1061copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/misc.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1062copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/radii.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1063copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/standardize.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1064copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/atom_masses.json -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1065creating build/bdist.linux-x86_64/wheel/biotite/structure/io1066copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io1067copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/general.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io1068copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trajfile.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io1069copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/util.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io1070creating build/bdist.linux-x86_64/wheel/biotite/structure/io/trr1071copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/trr1072copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/trr1073creating build/bdist.linux-x86_64/wheel/biotite/structure/io/xtc1074copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/xtc1075copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/xtc1076creating build/bdist.linux-x86_64/wheel/biotite/structure/io/dcd1077copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/dcd1078copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/dcd1079creating build/bdist.linux-x86_64/wheel/biotite/structure/io/gro1080copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/gro1081copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/gro1082creating build/bdist.linux-x86_64/wheel/biotite/structure/io/mol1083copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1084copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1085copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/ctab.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1086copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/header.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1087copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/mol.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1088copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/sdf.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1089creating build/bdist.linux-x86_64/wheel/biotite/structure/io/netcdf1090copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/netcdf1091copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/netcdf1092creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdb1093copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb1094copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb1095copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb1096creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdbqt1097copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt1098copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt1099copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt1100creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdbx1101copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1102copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/bcif.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1103copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/cif.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1104copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/component.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1105copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/compress.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1106copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1107copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/encoding.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1108copying build/lib.linux-x86_64-cpython-314/biotite/structure/atoms.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure1109copying build/lib.linux-x86_64-cpython-314/biotite/structure/bonds.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure1110copying build/lib.linux-x86_64-cpython-314/biotite/structure/celllist.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure1111copying build/lib.linux-x86_64-cpython-314/biotite/structure/spacegroups.json -> build/bdist.linux-x86_64/wheel/./biotite/structure1112copying build/lib.linux-x86_64-cpython-314/biotite/structure/spacegroups.license -> build/bdist.linux-x86_64/wheel/./biotite/structure1113copying build/lib.linux-x86_64-cpython-314/biotite/py.typed -> build/bdist.linux-x86_64/wheel/./biotite1114copying build/lib.linux-x86_64-cpython-314/biotite/rust.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite1115creating build/bdist.linux-x86_64/wheel/rust1116copying build/lib.linux-x86_64-cpython-314/rust/lib.rs -> build/bdist.linux-x86_64/wheel/./rust1117copying build/lib.linux-x86_64-cpython-314/rust/util.rs -> build/bdist.linux-x86_64/wheel/./rust1118creating build/bdist.linux-x86_64/wheel/rust/sequence1119copying build/lib.linux-x86_64-cpython-314/rust/sequence/codec.rs -> build/bdist.linux-x86_64/wheel/./rust/sequence1120copying build/lib.linux-x86_64-cpython-314/rust/sequence/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/sequence1121creating build/bdist.linux-x86_64/wheel/rust/structure1122copying build/lib.linux-x86_64-cpython-314/rust/structure/bonds.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1123copying build/lib.linux-x86_64-cpython-314/rust/structure/celllist.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1124copying build/lib.linux-x86_64-cpython-314/rust/structure/charges.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1125copying build/lib.linux-x86_64-cpython-314/rust/structure/connect.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1126copying build/lib.linux-x86_64-cpython-314/rust/structure/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1127copying build/lib.linux-x86_64-cpython-314/rust/structure/sasa.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1128copying build/lib.linux-x86_64-cpython-314/rust/structure/util.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1129creating build/bdist.linux-x86_64/wheel/rust/structure/io1130copying build/lib.linux-x86_64-cpython-314/rust/structure/io/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io1131creating build/bdist.linux-x86_64/wheel/rust/structure/io/pdb1132copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/file.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb1133copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/hybrid36.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb1134copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb1135creating build/bdist.linux-x86_64/wheel/rust/structure/io/pdbx1136copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx/encoding.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdbx1137copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdbx1138running install_egg_info1139Copying src/biotite.egg-info to build/bdist.linux-x86_64/wheel/./biotite-1.7.1-py3.14.egg-info1140running install_scripts1141creating build/bdist.linux-x86_64/wheel/biotite-1.7.1.dist-info/WHEEL1142creating '/build/source/dist/.tmp-jlhb22ss/biotite-1.7.1-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it1143adding 'biotite/__init__.py'1144adding 'biotite/copyable.py'1145adding 'biotite/file.py'1146adding 'biotite/py.typed'1147adding 'biotite/rust.cpython-314-x86_64-linux-gnu.so'1148adding 'biotite/setup_ccd.py'1149adding 'biotite/typing.py'1150adding 'biotite/version.py'1151adding 'biotite/visualize.py'1152adding 'biotite/application/__init__.py'1153adding 'biotite/application/application.py'1154adding 'biotite/application/localapp.py'1155adding 'biotite/application/msaapp.py'1156adding 'biotite/application/util.py'1157adding 'biotite/application/webapp.py'1158adding 'biotite/application/autodock/__init__.py'1159adding 'biotite/application/autodock/app.py'1160adding 'biotite/application/blast/__init__.py'1161adding 'biotite/application/blast/alignment.py'1162adding 'biotite/application/blast/webapp.py'1163adding 'biotite/application/clustalo/__init__.py'1164adding 'biotite/application/clustalo/app.py'1165adding 'biotite/application/dssp/__init__.py'1166adding 'biotite/application/dssp/app.py'1167adding 'biotite/application/mafft/__init__.py'1168adding 'biotite/application/mafft/app.py'1169adding 'biotite/application/muscle/__init__.py'1170adding 'biotite/application/muscle/app3.py'1171adding 'biotite/application/muscle/app5.py'1172adding 'biotite/application/sra/__init__.py'1173adding 'biotite/application/sra/app.py'1174adding 'biotite/application/tantan/__init__.py'1175adding 'biotite/application/tantan/app.py'1176adding 'biotite/application/viennarna/__init__.py'1177adding 'biotite/application/viennarna/rnaalifold.py'1178adding 'biotite/application/viennarna/rnafold.py'1179adding 'biotite/application/viennarna/rnaplot.py'1180adding 'biotite/application/viennarna/util.py'1181adding 'biotite/database/__init__.py'1182adding 'biotite/database/error.py'1183adding 'biotite/database/afdb/__init__.py'1184adding 'biotite/database/afdb/download.py'1185adding 'biotite/database/entrez/__init__.py'1186adding 'biotite/database/entrez/check.py'1187adding 'biotite/database/entrez/dbnames.py'1188adding 'biotite/database/entrez/download.py'1189adding 'biotite/database/entrez/key.py'1190adding 'biotite/database/entrez/query.py'1191adding 'biotite/database/pubchem/__init__.py'1192adding 'biotite/database/pubchem/download.py'1193adding 'biotite/database/pubchem/error.py'1194adding 'biotite/database/pubchem/query.py'1195adding 'biotite/database/pubchem/throttle.py'1196adding 'biotite/database/rcsb/__init__.py'1197adding 'biotite/database/rcsb/download.py'1198adding 'biotite/database/rcsb/query.py'1199adding 'biotite/database/uniprot/__init__.py'1200adding 'biotite/database/uniprot/check.py'1201adding 'biotite/database/uniprot/download.py'1202adding 'biotite/database/uniprot/query.py'1203adding 'biotite/interface/__init__.py'1204adding 'biotite/interface/version.py'1205adding 'biotite/interface/warning.py'1206adding 'biotite/interface/openmm/__init__.py'1207adding 'biotite/interface/openmm/state.py'1208adding 'biotite/interface/openmm/system.py'1209adding 'biotite/interface/pymol/__init__.py'1210adding 'biotite/interface/pymol/cgo.py'1211adding 'biotite/interface/pymol/convert.py'1212adding 'biotite/interface/pymol/display.py'1213adding 'biotite/interface/pymol/object.py'1214adding 'biotite/interface/pymol/shapes.py'1215adding 'biotite/interface/pymol/startup.py'1216adding 'biotite/interface/rdkit/__init__.py'1217adding 'biotite/interface/rdkit/mol.py'1218adding 'biotite/sequence/__init__.py'1219adding 'biotite/sequence/alphabet.py'1220adding 'biotite/sequence/annotation.py'1221adding 'biotite/sequence/codon.py'1222adding 'biotite/sequence/codon_tables.txt'1223adding 'biotite/sequence/profile.py'1224adding 'biotite/sequence/search.py'1225adding 'biotite/sequence/seqtypes.py'1226adding 'biotite/sequence/sequence.py'1227adding 'biotite/sequence/align/__init__.py'1228adding 'biotite/sequence/align/alignment.py'1229adding 'biotite/sequence/align/banded.c'1230adding 'biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so'1231adding 'biotite/sequence/align/banded.pyi'1232adding 'biotite/sequence/align/banded.pyx'1233adding 'biotite/sequence/align/buckets.py'1234adding 'biotite/sequence/align/cigar.py'1235adding 'biotite/sequence/align/kmeralphabet.c'1236adding 'biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so'1237adding 'biotite/sequence/align/kmeralphabet.pyi'1238adding 'biotite/sequence/align/kmeralphabet.pyx'1239adding 'biotite/sequence/align/kmersimilarity.c'1240adding 'biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so'1241adding 'biotite/sequence/align/kmersimilarity.pyi'1242adding 'biotite/sequence/align/kmersimilarity.pyx'1243adding 'biotite/sequence/align/kmertable.cpp'1244adding 'biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so'1245adding 'biotite/sequence/align/kmertable.pyi'1246adding 'biotite/sequence/align/kmertable.pyx'1247adding 'biotite/sequence/align/localgapped.c'1248adding 'biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so'1249adding 'biotite/sequence/align/localgapped.pyi'1250adding 'biotite/sequence/align/localgapped.pyx'1251adding 'biotite/sequence/align/localungapped.c'1252adding 'biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so'1253adding 'biotite/sequence/align/localungapped.pyi'1254adding 'biotite/sequence/align/localungapped.pyx'1255adding 'biotite/sequence/align/matrix.py'1256adding 'biotite/sequence/align/multiple.c'1257adding 'biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so'1258adding 'biotite/sequence/align/multiple.pyi'1259adding 'biotite/sequence/align/multiple.pyx'1260adding 'biotite/sequence/align/pairwise.c'1261adding 'biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so'1262adding 'biotite/sequence/align/pairwise.pyi'1263adding 'biotite/sequence/align/pairwise.pyx'1264adding 'biotite/sequence/align/permutation.c'1265adding 'biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so'1266adding 'biotite/sequence/align/permutation.pyi'1267adding 'biotite/sequence/align/permutation.pyx'1268adding 'biotite/sequence/align/primes.txt'1269adding 'biotite/sequence/align/selector.c'1270adding 'biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so'1271adding 'biotite/sequence/align/selector.pyi'1272adding 'biotite/sequence/align/selector.pyx'1273adding 'biotite/sequence/align/statistics.py'1274adding 'biotite/sequence/align/tracetable.c'1275adding 'biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so'1276adding 'biotite/sequence/align/tracetable.pxd'1277adding 'biotite/sequence/align/tracetable.pyx'1278adding 'biotite/sequence/align/matrix_data/3Di.mat'1279adding 'biotite/sequence/align/matrix_data/BLOSUM100.mat'1280adding 'biotite/sequence/align/matrix_data/BLOSUM30.mat'1281adding 'biotite/sequence/align/matrix_data/BLOSUM35.mat'1282adding 'biotite/sequence/align/matrix_data/BLOSUM40.mat'1283adding 'biotite/sequence/align/matrix_data/BLOSUM45.mat'1284adding 'biotite/sequence/align/matrix_data/BLOSUM50.mat'1285adding 'biotite/sequence/align/matrix_data/BLOSUM50_13p.mat'1286adding 'biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat'1287adding 'biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat'1288adding 'biotite/sequence/align/matrix_data/BLOSUM55.mat'1289adding 'biotite/sequence/align/matrix_data/BLOSUM60.mat'1290adding 'biotite/sequence/align/matrix_data/BLOSUM62.mat'1291adding 'biotite/sequence/align/matrix_data/BLOSUM62_13p.mat'1292adding 'biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat'1293adding 'biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat'1294adding 'biotite/sequence/align/matrix_data/BLOSUM65.mat'1295adding 'biotite/sequence/align/matrix_data/BLOSUM70.mat'1296adding 'biotite/sequence/align/matrix_data/BLOSUM75.mat'1297adding 'biotite/sequence/align/matrix_data/BLOSUM80.mat'1298adding 'biotite/sequence/align/matrix_data/BLOSUM85.mat'1299adding 'biotite/sequence/align/matrix_data/BLOSUM90.mat'1300adding 'biotite/sequence/align/matrix_data/BLOSUMN.mat'1301adding 'biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat'1302adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat'1303adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat'1304adding 'biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat'1305adding 'biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat'1306adding 'biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat'1307adding 'biotite/sequence/align/matrix_data/DAYHOFF.mat'1308adding 'biotite/sequence/align/matrix_data/GONNET.mat'1309adding 'biotite/sequence/align/matrix_data/IDENTITY.mat'1310adding 'biotite/sequence/align/matrix_data/MATCH.mat'1311adding 'biotite/sequence/align/matrix_data/NUC.mat'1312adding 'biotite/sequence/align/matrix_data/PAM10.mat'1313adding 'biotite/sequence/align/matrix_data/PAM100.mat'1314adding 'biotite/sequence/align/matrix_data/PAM110.mat'1315adding 'biotite/sequence/align/matrix_data/PAM120.mat'1316adding 'biotite/sequence/align/matrix_data/PAM130.mat'1317adding 'biotite/sequence/align/matrix_data/PAM140.mat'1318adding 'biotite/sequence/align/matrix_data/PAM150.mat'1319adding 'biotite/sequence/align/matrix_data/PAM160.mat'1320adding 'biotite/sequence/align/matrix_data/PAM170.mat'1321adding 'biotite/sequence/align/matrix_data/PAM180.mat'1322adding 'biotite/sequence/align/matrix_data/PAM190.mat'1323adding 'biotite/sequence/align/matrix_data/PAM20.mat'1324adding 'biotite/sequence/align/matrix_data/PAM200.mat'1325adding 'biotite/sequence/align/matrix_data/PAM210.mat'1326adding 'biotite/sequence/align/matrix_data/PAM220.mat'1327adding 'biotite/sequence/align/matrix_data/PAM230.mat'1328adding 'biotite/sequence/align/matrix_data/PAM240.mat'1329adding 'biotite/sequence/align/matrix_data/PAM250.mat'1330adding 'biotite/sequence/align/matrix_data/PAM260.mat'1331adding 'biotite/sequence/align/matrix_data/PAM270.mat'1332adding 'biotite/sequence/align/matrix_data/PAM280.mat'1333adding 'biotite/sequence/align/matrix_data/PAM290.mat'1334adding 'biotite/sequence/align/matrix_data/PAM30.mat'1335adding 'biotite/sequence/align/matrix_data/PAM300.mat'1336adding 'biotite/sequence/align/matrix_data/PAM310.mat'1337adding 'biotite/sequence/align/matrix_data/PAM320.mat'1338adding 'biotite/sequence/align/matrix_data/PAM330.mat'1339adding 'biotite/sequence/align/matrix_data/PAM340.mat'1340adding 'biotite/sequence/align/matrix_data/PAM350.mat'1341adding 'biotite/sequence/align/matrix_data/PAM360.mat'1342adding 'biotite/sequence/align/matrix_data/PAM370.mat'1343adding 'biotite/sequence/align/matrix_data/PAM380.mat'1344adding 'biotite/sequence/align/matrix_data/PAM390.mat'1345adding 'biotite/sequence/align/matrix_data/PAM40.mat'1346adding 'biotite/sequence/align/matrix_data/PAM400.mat'1347adding 'biotite/sequence/align/matrix_data/PAM410.mat'1348adding 'biotite/sequence/align/matrix_data/PAM420.mat'1349adding 'biotite/sequence/align/matrix_data/PAM430.mat'1350adding 'biotite/sequence/align/matrix_data/PAM440.mat'1351adding 'biotite/sequence/align/matrix_data/PAM450.mat'1352adding 'biotite/sequence/align/matrix_data/PAM460.mat'1353adding 'biotite/sequence/align/matrix_data/PAM470.mat'1354adding 'biotite/sequence/align/matrix_data/PAM480.mat'1355adding 'biotite/sequence/align/matrix_data/PAM490.mat'1356adding 'biotite/sequence/align/matrix_data/PAM50.mat'1357adding 'biotite/sequence/align/matrix_data/PAM500.mat'1358adding 'biotite/sequence/align/matrix_data/PAM60.mat'1359adding 'biotite/sequence/align/matrix_data/PAM70.mat'1360adding 'biotite/sequence/align/matrix_data/PAM80.mat'1361adding 'biotite/sequence/align/matrix_data/PAM90.mat'1362adding 'biotite/sequence/align/matrix_data/PB.license'1363adding 'biotite/sequence/align/matrix_data/PB.mat'1364adding 'biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat'1365adding 'biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat'1366adding 'biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat'1367adding 'biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat'1368adding 'biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat'1369adding 'biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat'1370adding 'biotite/sequence/graphics/__init__.py'1371adding 'biotite/sequence/graphics/alignment.py'1372adding 'biotite/sequence/graphics/colorschemes.py'1373adding 'biotite/sequence/graphics/dendrogram.py'1374adding 'biotite/sequence/graphics/features.py'1375adding 'biotite/sequence/graphics/logo.py'1376adding 'biotite/sequence/graphics/plasmid.py'1377adding 'biotite/sequence/graphics/color_schemes/3di_flower.json'1378adding 'biotite/sequence/graphics/color_schemes/autumn.json'1379adding 'biotite/sequence/graphics/color_schemes/blossom.json'1380adding 'biotite/sequence/graphics/color_schemes/clustalx_dna.json'1381adding 'biotite/sequence/graphics/color_schemes/clustalx_protein.json'1382adding 'biotite/sequence/graphics/color_schemes/flower.json'1383adding 'biotite/sequence/graphics/color_schemes/jalview_buried.json'1384adding 'biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json'1385adding 'biotite/sequence/graphics/color_schemes/jalview_prop_helix.json'1386adding 'biotite/sequence/graphics/color_schemes/jalview_prop_strand.json'1387adding 'biotite/sequence/graphics/color_schemes/jalview_prop_turn.json'1388adding 'biotite/sequence/graphics/color_schemes/jalview_taylor.json'1389adding 'biotite/sequence/graphics/color_schemes/jalview_zappo.json'1390adding 'biotite/sequence/graphics/color_schemes/ocean.json'1391adding 'biotite/sequence/graphics/color_schemes/pb_flower.json'1392adding 'biotite/sequence/graphics/color_schemes/rainbow_dna.json'1393adding 'biotite/sequence/graphics/color_schemes/rainbow_protein.json'1394adding 'biotite/sequence/graphics/color_schemes/spring.json'1395adding 'biotite/sequence/graphics/color_schemes/sunset.json'1396adding 'biotite/sequence/graphics/color_schemes/wither.json'1397adding 'biotite/sequence/io/__init__.py'1398adding 'biotite/sequence/io/general.py'1399adding 'biotite/sequence/io/clustal/__init__.py'1400adding 'biotite/sequence/io/clustal/convert.py'1401adding 'biotite/sequence/io/clustal/file.py'1402adding 'biotite/sequence/io/fasta/__init__.py'1403adding 'biotite/sequence/io/fasta/convert.py'1404adding 'biotite/sequence/io/fasta/file.py'1405adding 'biotite/sequence/io/fastq/__init__.py'1406adding 'biotite/sequence/io/fastq/convert.py'1407adding 'biotite/sequence/io/fastq/file.py'1408adding 'biotite/sequence/io/genbank/__init__.py'1409adding 'biotite/sequence/io/genbank/annotation.py'1410adding 'biotite/sequence/io/genbank/file.py'1411adding 'biotite/sequence/io/genbank/metadata.py'1412adding 'biotite/sequence/io/genbank/sequence.py'1413adding 'biotite/sequence/io/gff/__init__.py'1414adding 'biotite/sequence/io/gff/convert.py'1415adding 'biotite/sequence/io/gff/file.py'1416adding 'biotite/sequence/phylo/__init__.py'1417adding 'biotite/sequence/phylo/nj.c'1418adding 'biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so'1419adding 'biotite/sequence/phylo/nj.pyi'1420adding 'biotite/sequence/phylo/nj.pyx'1421adding 'biotite/sequence/phylo/tree.c'1422adding 'biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so'1423adding 'biotite/sequence/phylo/tree.pyi'1424adding 'biotite/sequence/phylo/tree.pyx'1425adding 'biotite/sequence/phylo/upgma.c'1426adding 'biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so'1427adding 'biotite/sequence/phylo/upgma.pyi'1428adding 'biotite/sequence/phylo/upgma.pyx'1429adding 'biotite/structure/__init__.py'1430adding 'biotite/structure/atoms.py'1431adding 'biotite/structure/atoms.pyi'1432adding 'biotite/structure/basepairs.py'1433adding 'biotite/structure/bonds.py'1434adding 'biotite/structure/bonds.pyi'1435adding 'biotite/structure/box.py'1436adding 'biotite/structure/celllist.py'1437adding 'biotite/structure/celllist.pyi'1438adding 'biotite/structure/chains.py'1439adding 'biotite/structure/charges.py'1440adding 'biotite/structure/compare.py'1441adding 'biotite/structure/connect.py'1442adding 'biotite/structure/density.py'1443adding 'biotite/structure/dotbracket.py'1444adding 'biotite/structure/error.py'1445adding 'biotite/structure/filter.py'1446adding 'biotite/structure/geometry.py'1447adding 'biotite/structure/hbond.py'1448adding 'biotite/structure/integrity.py'1449adding 'biotite/structure/mechanics.py'1450adding 'biotite/structure/molecules.py'1451adding 'biotite/structure/pseudoknots.py'1452adding 'biotite/structure/rdf.py'1453adding 'biotite/structure/repair.py'1454adding 'biotite/structure/residues.py'1455adding 'biotite/structure/rings.py'1456adding 'biotite/structure/sasa.py'1457adding 'biotite/structure/segments.py'1458adding 'biotite/structure/sequence.py'1459adding 'biotite/structure/spacegroups.json'1460adding 'biotite/structure/spacegroups.license'1461adding 'biotite/structure/sse.py'1462adding 'biotite/structure/superimpose.py'1463adding 'biotite/structure/tm.py'1464adding 'biotite/structure/transform.py'1465adding 'biotite/structure/util.py'1466adding 'biotite/structure/alphabet/__init__.py'1467adding 'biotite/structure/alphabet/encoder.py'1468adding 'biotite/structure/alphabet/encoder_weights_3di.kerasify'1469adding 'biotite/structure/alphabet/i3d.py'1470adding 'biotite/structure/alphabet/layers.py'1471adding 'biotite/structure/alphabet/pb.license'1472adding 'biotite/structure/alphabet/pb.py'1473adding 'biotite/structure/alphabet/unkerasify.py'1474adding 'biotite/structure/graphics/__init__.py'1475adding 'biotite/structure/graphics/atoms.py'1476adding 'biotite/structure/graphics/rna.py'1477adding 'biotite/structure/info/__init__.py'1478adding 'biotite/structure/info/atom_masses.json'1479adding 'biotite/structure/info/atoms.py'1480adding 'biotite/structure/info/bonds.py'1481adding 'biotite/structure/info/ccd.py'1482adding 'biotite/structure/info/groups.py'1483adding 'biotite/structure/info/masses.py'1484adding 'biotite/structure/info/misc.py'1485adding 'biotite/structure/info/radii.py'1486adding 'biotite/structure/info/standardize.py'1487adding 'biotite/structure/io/__init__.py'1488adding 'biotite/structure/io/general.py'1489adding 'biotite/structure/io/trajfile.py'1490adding 'biotite/structure/io/util.py'1491adding 'biotite/structure/io/dcd/__init__.py'1492adding 'biotite/structure/io/dcd/file.py'1493adding 'biotite/structure/io/gro/__init__.py'1494adding 'biotite/structure/io/gro/file.py'1495adding 'biotite/structure/io/mol/__init__.py'1496adding 'biotite/structure/io/mol/convert.py'1497adding 'biotite/structure/io/mol/ctab.py'1498adding 'biotite/structure/io/mol/header.py'1499adding 'biotite/structure/io/mol/mol.py'1500adding 'biotite/structure/io/mol/sdf.py'1501adding 'biotite/structure/io/netcdf/__init__.py'1502adding 'biotite/structure/io/netcdf/file.py'1503adding 'biotite/structure/io/pdb/__init__.py'1504adding 'biotite/structure/io/pdb/convert.py'1505adding 'biotite/structure/io/pdb/file.py'1506adding 'biotite/structure/io/pdbqt/__init__.py'1507adding 'biotite/structure/io/pdbqt/convert.py'1508adding 'biotite/structure/io/pdbqt/file.py'1509adding 'biotite/structure/io/pdbx/__init__.py'1510adding 'biotite/structure/io/pdbx/bcif.py'1511adding 'biotite/structure/io/pdbx/cif.py'1512adding 'biotite/structure/io/pdbx/component.py'1513adding 'biotite/structure/io/pdbx/compress.py'1514adding 'biotite/structure/io/pdbx/convert.py'1515adding 'biotite/structure/io/pdbx/encoding.py'1516adding 'biotite/structure/io/trr/__init__.py'1517adding 'biotite/structure/io/trr/file.py'1518adding 'biotite/structure/io/xtc/__init__.py'1519adding 'biotite/structure/io/xtc/file.py'1520adding 'biotite-1.7.1.dist-info/licenses/LICENSE.rst'1521adding 'rust/lib.rs'1522adding 'rust/util.rs'1523adding 'rust/sequence/codec.rs'1524adding 'rust/sequence/mod.rs'1525adding 'rust/structure/bonds.rs'1526adding 'rust/structure/celllist.rs'1527adding 'rust/structure/charges.rs'1528adding 'rust/structure/connect.rs'1529adding 'rust/structure/mod.rs'1530adding 'rust/structure/sasa.rs'1531adding 'rust/structure/util.rs'1532adding 'rust/structure/io/mod.rs'1533adding 'rust/structure/io/pdb/file.rs'1534adding 'rust/structure/io/pdb/hybrid36.rs'1535adding 'rust/structure/io/pdb/mod.rs'1536adding 'rust/structure/io/pdbx/encoding.rs'1537adding 'rust/structure/io/pdbx/mod.rs'1538adding 'biotite-1.7.1.dist-info/METADATA'1539adding 'biotite-1.7.1.dist-info/WHEEL'1540adding 'biotite-1.7.1.dist-info/top_level.txt'1541adding 'biotite-1.7.1.dist-info/RECORD'1542removing build/bdist.linux-x86_64/wheel1543Successfully built biotite-1.7.1-cp314-cp314-linux_x86_64.whl1544Finished creating a wheel...1545Finished executing pypaBuildPhase1546buildPhase completed in 2 minutes 55 secondspythonRuntimeDepsCheckHook
1547Executing pythonRuntimeDepsCheck1548Checking runtime dependencies for biotite-1.7.1-cp314-cp314-linux_x86_64.whl1549Finished executing pythonRuntimeDepsCheckinstallPhase
1550Executing pypaInstallPhase1551Successfully installed biotite-1.7.1-cp314-cp314-linux_x86_64.whl1552Finished executing pypaInstallPhasepythonOutputDistPhase
1553Executing pythonOutputDistPhase1554Finished executing pythonOutputDistPhasefixupPhase
1555shrinking RPATHs of ELF executables and libraries in /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.11556shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/rust.cpython-314-x86_64-linux-gnu.so1557shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so1558shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so1559shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so1560shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so1561shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so1562shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so1563shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so1564shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so1565shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so1566shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so1567shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so1568shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so1569shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so1570shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so1571checking for references to /build/ in /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1...1572patching script interpreter paths in /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.11573stripping (with command strip and flags -S -p) in /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib1574shrinking RPATHs of ELF executables and libraries in /nix/store/zvqffzyvfh9aihhqg6crp9136pb6hvlf-python3.14-biotite-1.7.1-dist1575checking for references to /build/ in /nix/store/zvqffzyvfh9aihhqg6crp9136pb6hvlf-python3.14-biotite-1.7.1-dist...1576patching script interpreter paths in /nix/store/zvqffzyvfh9aihhqg6crp9136pb6hvlf-python3.14-biotite-1.7.1-dist1577Executing pythonRemoveTestsDir1578Finished executing pythonRemoveTestsDirpythonImportsCheckPhase
1579Executing pythonImportsCheckPhase1580Check whether the following modules can be imported: biotite biotite.sequence biotite.structurepythonMetadataCheckPhase
1581Executing pythonMetadataCheckPhase