these 2 derivations will be built: /nix/store/zhgyxp3icbhif7997zs6c2d50kjlr91f-source.drv /nix/store/jkkcvxh3vsp7rnrqszwz4yp90asfz8nb-thermompnn-1.0-unstable-2026-09-09.drv building '/nix/store/hj8x6wb926w2lkzhxwgw3hl54vxg1kzp-source.drv' source> structuredAttrs is enabled source> source> trying https://github.com/Kuhlman-Lab/ThermoMPNN/archive/370f76ec62bd929f7425e311d8df04a0d094990f.tar.gz source> % Total % Received % Xferd Average Speed Time Time Time Current source> Dload Upload Total Spent Left Speed source> source> 0 0 0 0 0 0 0 0 0 source> 0 0 0 0 0 0 0 0 0 source> 0 0 0 0 0 0 0 0 0 source> source> 0 0 0 0 0 0 0 0 0 source> 100 2.52M 0 2.52M 0 0 1.93M 0 00:01 2.45M source> 100 8.50M 0 8.50M 0 0 3.66M 0 00:02 4.16M source> 100 15.25M 0 15.25M 0 0 4.55M 0 00:03 4.97M source> 100 18.58M 0 18.58M 0 0 4.22M 0 00:04 4.50M source> 100 40.75M 0 40.75M 0 0 7.54M 0 00:05 7.95M source> 100 60.00M 0 60.00M 0 0 9.37M 0 00:06 11.28M source> 100 61.86M 0 61.86M 0 0 9.54M 0 00:06 11.28M source> 100 61.86M 0 61.86M 0 0 9.54M 0 00:06 11.28M source> 100 61.86M 0 61.86M 0 0 9.54M 0 00:06 11.28M source> unpacking source archive /build/download.tar.gz building '/nix/store/jkkcvxh3vsp7rnrqszwz4yp90asfz8nb-thermompnn-1.0-unstable-2026-09-09.drv' thermompnn-1.0-unstable-2026-09-09> Running phase: unpackPhase thermompnn-1.0-unstable-2026-09-09> unpacking source archive /nix/store/a1xiq0ksk7dwig89myp036pp931a13jq-source thermompnn-1.0-unstable-2026-09-09> source root is source thermompnn-1.0-unstable-2026-09-09> Running phase: patchPhase thermompnn-1.0-unstable-2026-09-09> Running phase: updateAutotoolsGnuConfigScriptsPhase thermompnn-1.0-unstable-2026-09-09> Running phase: configurePhase thermompnn-1.0-unstable-2026-09-09> no configure script, doing nothing thermompnn-1.0-unstable-2026-09-09> Running phase: buildPhase thermompnn-1.0-unstable-2026-09-09> no Makefile or custom buildPhase, doing nothing thermompnn-1.0-unstable-2026-09-09> Running phase: installPhase thermompnn-1.0-unstable-2026-09-09> Running phase: fixupPhase thermompnn-1.0-unstable-2026-09-09> shrinking RPATHs of ELF executables and libraries in /nix/store/wrzqfmz40183n5kjqg5wk31svwdwky4b-thermompnn-1.0-unstable-2026-09-09 thermompnn-1.0-unstable-2026-09-09> checking for references to /build/ in /nix/store/wrzqfmz40183n5kjqg5wk31svwdwky4b-thermompnn-1.0-unstable-2026-09-09... thermompnn-1.0-unstable-2026-09-09> patching script interpreter paths in /nix/store/wrzqfmz40183n5kjqg5wk31svwdwky4b-thermompnn-1.0-unstable-2026-09-09 thermompnn-1.0-unstable-2026-09-09> stripping (with command strip and flags -S -p) in /nix/store/wrzqfmz40183n5kjqg5wk31svwdwky4b-thermompnn-1.0-unstable-2026-09-09/bin thermompnn-1.0-unstable-2026-09-09> Running phase: installCheckPhase thermompnn-1.0-unstable-2026-09-09> /nix/store/i7hmws104c6dx6k99wnggd00m18x1m2s-python3-3.14.7-env/lib/python3.14/site-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. thermompnn-1.0-unstable-2026-09-09> warnings.warn( thermompnn-1.0-unstable-2026-09-09> /nix/store/i7hmws104c6dx6k99wnggd00m18x1m2s-python3-3.14.7-env/lib/python3.14/site-packages/torchmetrics/utilities/prints.py:43: UserWarning: Metric `SpearmanCorrcoef` will save all targets and predictions in the buffer. For large datasets, this may lead to large memory footprint. thermompnn-1.0-unstable-2026-09-09> warnings.warn(*args, **kwargs) thermompnn-1.0-unstable-2026-09-09> Model Dataset ddG_pred position wildtype mutation pdb chain thermompnn-1.0-unstable-2026-09-09> 0 ThermoMPNN test 0.133521 0 T A test A thermompnn-1.0-unstable-2026-09-09> 1 ThermoMPNN test -0.127606 0 T C test A thermompnn-1.0-unstable-2026-09-09> 2 ThermoMPNN test 0.535634 0 T D test A thermompnn-1.0-unstable-2026-09-09> 3 ThermoMPNN test 0.383188 0 T E test A thermompnn-1.0-unstable-2026-09-09> 4 ThermoMPNN test 0.00563 0 T F test A thermompnn-1.0-unstable-2026-09-09> .. ... ... ... ... ... ... ... ... thermompnn-1.0-unstable-2026-09-09> 115 ThermoMPNN test 0.0 5 S S test A thermompnn-1.0-unstable-2026-09-09> 116 ThermoMPNN test 0.162641 5 S T test A thermompnn-1.0-unstable-2026-09-09> 117 ThermoMPNN test 0.093034 5 S V test A thermompnn-1.0-unstable-2026-09-09> 118 ThermoMPNN test -0.29962 5 S W test A thermompnn-1.0-unstable-2026-09-09> 119 ThermoMPNN test -0.202574 5 S Y test A thermompnn-1.0-unstable-2026-09-09> thermompnn-1.0-unstable-2026-09-09> [120 rows x 8 columns] thermompnn-1.0-unstable-2026-09-09> Saved ThermoMPNN output to out/ThermoMPNN_inference_test.csv thermompnn-1.0-unstable-2026-09-09> install check OK: 121 rows in out/ThermoMPNN_inference_test.csv post-build step Route build to niks3: ok Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org time=2026-09-10T05:20:40.305+09:00 level=INFO msg="Uploading 1 paths to niks3.sjanglab.org (147 already cached)" time=2026-09-10T05:20:40.305+09:00 level=INFO msg="Uploading wrzqfmz40183n5kjqg5wk31svwdwky4b-thermompnn-1.0-unstable-2026-09-09 (155.6MB)" time=2026-09-10T05:20:50.497+09:00 level=INFO msg="Uploading 1 narinfos" time=2026-09-10T05:20:51.009+09:00 level=INFO msg="Upload complete. (11.043s)"