python3.14-snapgene-reader-0.1.23
checks.x86_64-linux.pkgs-snapgene-reader
· build #66
· raw
1Sourcing python-remove-tests-dir-hook2Sourcing python-catch-conflicts-hook.sh3Sourcing python-remove-bin-bytecode-hook.sh4Sourcing pypa-build-hook5Using pypaBuildPhase6Sourcing python-runtime-deps-check-hook7Using pythonRuntimeDepsCheckHook8Sourcing pypa-install-hook9Using pypaInstallPhase10Sourcing python-imports-check-hook.sh11Using pythonImportsCheckPhase12Sourcing python-metadata-check-hook.sh13Using pythonMetadataCheckPhase14Sourcing python-namespaces-hook15Sourcing python-catch-conflicts-hook.sh16Sourcing pytest-check-hook17Using pytestCheckPhase18Using checkPhaseThreadLimitHook
unpackPhase
19unpacking source archive /nix/store/ki24qyjvmzxraphqlbnh2hvfgx8d55w0-source20source root is source21setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/test_samples/test_with_a_single_feature_ie_no_features_list.dna"configurePhase
22no configure script, doing nothingbuildPhase
23Executing pypaBuildPhase24Creating a wheel...25pypa build flags: --no-isolation --outdir dist/ --wheel26* Getting build dependencies for wheel...27running egg_info28creating snapgene_reader.egg-info29writing snapgene_reader.egg-info/PKG-INFO30writing dependency_links to snapgene_reader.egg-info/dependency_links.txt31writing requirements to snapgene_reader.egg-info/requires.txt32writing top-level names to snapgene_reader.egg-info/top_level.txt33writing manifest file 'snapgene_reader.egg-info/SOURCES.txt'34reading manifest file 'snapgene_reader.egg-info/SOURCES.txt'35adding license file 'LICENSE'36writing manifest file 'snapgene_reader.egg-info/SOURCES.txt'37* Building wheel...38running bdist_wheel39running build40running build_py41creating build/lib/snapgene_reader42copying snapgene_reader/__init__.py -> build/lib/snapgene_reader43copying snapgene_reader/snapgene_reader.py -> build/lib/snapgene_reader44copying snapgene_reader/version.py -> build/lib/snapgene_reader45running egg_info46writing snapgene_reader.egg-info/PKG-INFO47writing dependency_links to snapgene_reader.egg-info/dependency_links.txt48writing requirements to snapgene_reader.egg-info/requires.txt49writing top-level names to snapgene_reader.egg-info/top_level.txt50reading manifest file 'snapgene_reader.egg-info/SOURCES.txt'51adding license file 'LICENSE'52writing manifest file 'snapgene_reader.egg-info/SOURCES.txt'53installing to build/bdist.linux-x86_64/wheel54running install55running install_lib56creating build/bdist.linux-x86_64/wheel57creating build/bdist.linux-x86_64/wheel/snapgene_reader58copying build/lib/snapgene_reader/__init__.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader59copying build/lib/snapgene_reader/snapgene_reader.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader60copying build/lib/snapgene_reader/version.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader61running install_egg_info62Copying snapgene_reader.egg-info to build/bdist.linux-x86_64/wheel/./snapgene_reader-0.1.23-py3.14.egg-info63running install_scripts64creating build/bdist.linux-x86_64/wheel/snapgene_reader-0.1.23.dist-info/WHEEL65creating '/build/source/dist/.tmp-sx8alfvw/snapgene_reader-0.1.23-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it66adding 'snapgene_reader/__init__.py'67adding 'snapgene_reader/snapgene_reader.py'68adding 'snapgene_reader/version.py'69adding 'snapgene_reader-0.1.23.dist-info/licenses/LICENSE'70adding 'snapgene_reader-0.1.23.dist-info/METADATA'71adding 'snapgene_reader-0.1.23.dist-info/WHEEL'72adding 'snapgene_reader-0.1.23.dist-info/top_level.txt'73adding 'snapgene_reader-0.1.23.dist-info/RECORD'74removing build/bdist.linux-x86_64/wheel75Successfully built snapgene_reader-0.1.23-py3-none-any.whl76Finished creating a wheel...77Finished executing pypaBuildPhasepythonRuntimeDepsCheckHook
78Executing pythonRuntimeDepsCheck79Checking runtime dependencies for snapgene_reader-0.1.23-py3-none-any.whl80Finished executing pythonRuntimeDepsCheckinstallPhase
81Executing pypaInstallPhase82Successfully installed snapgene_reader-0.1.23-py3-none-any.whl83Finished executing pypaInstallPhasepythonOutputDistPhase
84Executing pythonOutputDistPhase85Finished executing pythonOutputDistPhasefixupPhase
86shrinking RPATHs of ELF executables and libraries in /nix/store/3623cskgzpcncdfwicgaqvw5ci5hk5x0-python3.14-snapgene-reader-0.1.2387checking for references to /build/ in /nix/store/3623cskgzpcncdfwicgaqvw5ci5hk5x0-python3.14-snapgene-reader-0.1.23...88patching script interpreter paths in /nix/store/3623cskgzpcncdfwicgaqvw5ci5hk5x0-python3.14-snapgene-reader-0.1.2389stripping (with command strip and flags -S -p) in /nix/store/3623cskgzpcncdfwicgaqvw5ci5hk5x0-python3.14-snapgene-reader-0.1.23/lib90shrinking RPATHs of ELF executables and libraries in /nix/store/r22zda376ry5rj6ph3x48k873cmxgn73-python3.14-snapgene-reader-0.1.23-dist91checking for references to /build/ in /nix/store/r22zda376ry5rj6ph3x48k873cmxgn73-python3.14-snapgene-reader-0.1.23-dist...92patching script interpreter paths in /nix/store/r22zda376ry5rj6ph3x48k873cmxgn73-python3.14-snapgene-reader-0.1.23-dist93Executing pythonRemoveTestsDir94Finished executing pythonRemoveTestsDirinstallCheckPhase
95setting known thread variables to default: 196 OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=197no Makefile or custom installCheckPhase, doing nothingpythonImportsCheckPhase
98Executing pythonImportsCheckPhase99Check whether the following modules can be imported: snapgene_readerpythonMetadataCheckPhase
100Executing pythonMetadataCheckPhasepytestCheckPhase
101Executing pytestCheckPhase102setting known thread variables to default: 1103 OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1104pytest flags: -m pytest tests105============================= test session starts ==============================106platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0107rootdir: /build/source108configfile: pyproject.toml109collected 2 items 110111tests/test_general.py .. [100%]112113=============================== warnings summary ===============================114tests/test_general.py::test_snapgene_file_to_gbk115 /nix/store/47cv8gslxwz2i759ln4swcvgzz5vy100-python3.14-biopython-1.86/lib/python3.14/site-packages/Bio/GenBank/__init__.py:724: BiopythonParserWarning: negative starting position in feature location '0..4'; setting feature location to None.116 warnings.warn(117118tests/test_general.py::test_snapgene_file_to_gbk119 /nix/store/47cv8gslxwz2i759ln4swcvgzz5vy100-python3.14-biopython-1.86/lib/python3.14/site-packages/Bio/GenBank/__init__.py:724: BiopythonParserWarning: negative starting position in feature location '0..225'; setting feature location to None.120 warnings.warn(121122-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html123======================== 2 passed, 2 warnings in 0.14s =========================124Finished executing pytestCheckPhase