Sourcing python-remove-tests-dir-hook Sourcing python-catch-conflicts-hook.sh Sourcing python-remove-bin-bytecode-hook.sh Sourcing pypa-build-hook Using pypaBuildPhase Sourcing python-runtime-deps-check-hook Using pythonRuntimeDepsCheckHook Sourcing pypa-install-hook Using pypaInstallPhase Sourcing python-imports-check-hook.sh Using pythonImportsCheckPhase Sourcing python-metadata-check-hook.sh Using pythonMetadataCheckPhase Sourcing python-namespaces-hook Sourcing python-catch-conflicts-hook.sh Sourcing pytest-check-hook Using pytestCheckPhase Using checkPhaseThreadLimitHook Running phase: unpackPhase unpacking source archive /nix/store/axgdq6icxv756ga4nwikpwms4gmds98g-source source root is source setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/test_biotools.py" Running phase: patchPhase Running phase: updateAutotoolsGnuConfigScriptsPhase Running phase: configurePhase no configure script, doing nothing Running phase: buildPhase Executing pypaBuildPhase Creating a wheel... pypa build flags: --no-isolation --outdir dist/ --wheel * Getting build dependencies for wheel... running egg_info creating dna_features_viewer.egg-info writing dna_features_viewer.egg-info/PKG-INFO writing dependency_links to dna_features_viewer.egg-info/dependency_links.txt writing requirements to dna_features_viewer.egg-info/requires.txt writing top-level names to dna_features_viewer.egg-info/top_level.txt writing manifest file 'dna_features_viewer.egg-info/SOURCES.txt' reading manifest file 'dna_features_viewer.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'dna_features_viewer.egg-info/SOURCES.txt' * Building wheel... running bdist_wheel running build running build_py creating build/lib/dna_features_viewer copying dna_features_viewer/GraphicFeature.py -> build/lib/dna_features_viewer copying dna_features_viewer/__init__.py -> build/lib/dna_features_viewer copying dna_features_viewer/biotools.py -> build/lib/dna_features_viewer copying dna_features_viewer/compute_features_levels.py -> build/lib/dna_features_viewer copying dna_features_viewer/version.py -> build/lib/dna_features_viewer creating build/lib/dna_features_viewer/BiopythonTranslator copying dna_features_viewer/BiopythonTranslator/BiopythonTranslator.py -> build/lib/dna_features_viewer/BiopythonTranslator copying dna_features_viewer/BiopythonTranslator/BiopythonTranslatorBase.py -> build/lib/dna_features_viewer/BiopythonTranslator copying dna_features_viewer/BiopythonTranslator/BlackBoxlessLabelTranslator.py -> build/lib/dna_features_viewer/BiopythonTranslator copying dna_features_viewer/BiopythonTranslator/__init__.py -> build/lib/dna_features_viewer/BiopythonTranslator creating build/lib/dna_features_viewer/CircularGraphicRecord copying dna_features_viewer/CircularGraphicRecord/ArrowWedge.py -> build/lib/dna_features_viewer/CircularGraphicRecord copying dna_features_viewer/CircularGraphicRecord/CircularGraphicRecord.py -> build/lib/dna_features_viewer/CircularGraphicRecord copying dna_features_viewer/CircularGraphicRecord/__init__.py -> build/lib/dna_features_viewer/CircularGraphicRecord creating build/lib/dna_features_viewer/GraphicRecord copying dna_features_viewer/GraphicRecord/BokehPlottableMixin.py -> build/lib/dna_features_viewer/GraphicRecord copying dna_features_viewer/GraphicRecord/GraphicRecord.py -> build/lib/dna_features_viewer/GraphicRecord copying dna_features_viewer/GraphicRecord/MatplotlibPlottableMixin.py -> build/lib/dna_features_viewer/GraphicRecord copying dna_features_viewer/GraphicRecord/MultilinePlottableMixin.py -> build/lib/dna_features_viewer/GraphicRecord copying dna_features_viewer/GraphicRecord/SequenceAndTranslationMixin.py -> build/lib/dna_features_viewer/GraphicRecord copying dna_features_viewer/GraphicRecord/__init__.py -> build/lib/dna_features_viewer/GraphicRecord running egg_info writing dna_features_viewer.egg-info/PKG-INFO writing dependency_links to dna_features_viewer.egg-info/dependency_links.txt writing requirements to dna_features_viewer.egg-info/requires.txt writing top-level names to dna_features_viewer.egg-info/top_level.txt reading manifest file 'dna_features_viewer.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'dna_features_viewer.egg-info/SOURCES.txt' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dna_features_viewer copying build/lib/dna_features_viewer/GraphicFeature.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer copying build/lib/dna_features_viewer/__init__.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer copying build/lib/dna_features_viewer/biotools.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer copying build/lib/dna_features_viewer/compute_features_levels.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer copying build/lib/dna_features_viewer/version.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer creating build/bdist.linux-x86_64/wheel/dna_features_viewer/BiopythonTranslator copying build/lib/dna_features_viewer/BiopythonTranslator/BiopythonTranslator.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/BiopythonTranslator copying build/lib/dna_features_viewer/BiopythonTranslator/BiopythonTranslatorBase.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/BiopythonTranslator copying build/lib/dna_features_viewer/BiopythonTranslator/BlackBoxlessLabelTranslator.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/BiopythonTranslator copying build/lib/dna_features_viewer/BiopythonTranslator/__init__.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/BiopythonTranslator creating build/bdist.linux-x86_64/wheel/dna_features_viewer/CircularGraphicRecord copying build/lib/dna_features_viewer/CircularGraphicRecord/ArrowWedge.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/CircularGraphicRecord copying build/lib/dna_features_viewer/CircularGraphicRecord/CircularGraphicRecord.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/CircularGraphicRecord copying build/lib/dna_features_viewer/CircularGraphicRecord/__init__.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/CircularGraphicRecord creating build/bdist.linux-x86_64/wheel/dna_features_viewer/GraphicRecord copying build/lib/dna_features_viewer/GraphicRecord/BokehPlottableMixin.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/GraphicRecord copying build/lib/dna_features_viewer/GraphicRecord/GraphicRecord.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/GraphicRecord copying build/lib/dna_features_viewer/GraphicRecord/MatplotlibPlottableMixin.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/GraphicRecord copying build/lib/dna_features_viewer/GraphicRecord/MultilinePlottableMixin.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/GraphicRecord copying build/lib/dna_features_viewer/GraphicRecord/SequenceAndTranslationMixin.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/GraphicRecord copying build/lib/dna_features_viewer/GraphicRecord/__init__.py -> build/bdist.linux-x86_64/wheel/./dna_features_viewer/GraphicRecord running install_egg_info Copying dna_features_viewer.egg-info to build/bdist.linux-x86_64/wheel/./dna_features_viewer-3.1.5-py3.14.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dna_features_viewer-3.1.5.dist-info/WHEEL creating '/build/source/dist/.tmp-hjj3506c/dna_features_viewer-3.1.5-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'dna_features_viewer/GraphicFeature.py' adding 'dna_features_viewer/__init__.py' adding 'dna_features_viewer/biotools.py' adding 'dna_features_viewer/compute_features_levels.py' adding 'dna_features_viewer/version.py' adding 'dna_features_viewer/BiopythonTranslator/BiopythonTranslator.py' adding 'dna_features_viewer/BiopythonTranslator/BiopythonTranslatorBase.py' adding 'dna_features_viewer/BiopythonTranslator/BlackBoxlessLabelTranslator.py' adding 'dna_features_viewer/BiopythonTranslator/__init__.py' adding 'dna_features_viewer/CircularGraphicRecord/ArrowWedge.py' adding 'dna_features_viewer/CircularGraphicRecord/CircularGraphicRecord.py' adding 'dna_features_viewer/CircularGraphicRecord/__init__.py' adding 'dna_features_viewer/GraphicRecord/BokehPlottableMixin.py' adding 'dna_features_viewer/GraphicRecord/GraphicRecord.py' adding 'dna_features_viewer/GraphicRecord/MatplotlibPlottableMixin.py' adding 'dna_features_viewer/GraphicRecord/MultilinePlottableMixin.py' adding 'dna_features_viewer/GraphicRecord/SequenceAndTranslationMixin.py' adding 'dna_features_viewer/GraphicRecord/__init__.py' adding 'dna_features_viewer-3.1.5.dist-info/licenses/LICENSE' adding 'dna_features_viewer-3.1.5.dist-info/METADATA' adding 'dna_features_viewer-3.1.5.dist-info/WHEEL' adding 'dna_features_viewer-3.1.5.dist-info/top_level.txt' adding 'dna_features_viewer-3.1.5.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built dna_features_viewer-3.1.5-py3-none-any.whl Finished creating a wheel... Finished executing pypaBuildPhase Running phase: pythonRuntimeDepsCheckHook Executing pythonRuntimeDepsCheck Checking runtime dependencies for dna_features_viewer-3.1.5-py3-none-any.whl Finished executing pythonRuntimeDepsCheck Running phase: installPhase Executing pypaInstallPhase Successfully installed dna_features_viewer-3.1.5-py3-none-any.whl Finished executing pypaInstallPhase Running phase: pythonOutputDistPhase Executing pythonOutputDistPhase Finished executing pythonOutputDistPhase Running phase: fixupPhase shrinking RPATHs of ELF executables and libraries in /nix/store/8md5i6b3dyjkf6n9v14fqljz2ihz8cxy-python3.14-dna-features-viewer-3.1.5 checking for references to /build/ in /nix/store/8md5i6b3dyjkf6n9v14fqljz2ihz8cxy-python3.14-dna-features-viewer-3.1.5... patching script interpreter paths in /nix/store/8md5i6b3dyjkf6n9v14fqljz2ihz8cxy-python3.14-dna-features-viewer-3.1.5 stripping (with command strip and flags -S -p) in /nix/store/8md5i6b3dyjkf6n9v14fqljz2ihz8cxy-python3.14-dna-features-viewer-3.1.5/lib shrinking RPATHs of ELF executables and libraries in /nix/store/1lmi5xpdk2zsdgbyb0zxk5hlryxbxv48-python3.14-dna-features-viewer-3.1.5-dist checking for references to /build/ in /nix/store/1lmi5xpdk2zsdgbyb0zxk5hlryxbxv48-python3.14-dna-features-viewer-3.1.5-dist... patching script interpreter paths in /nix/store/1lmi5xpdk2zsdgbyb0zxk5hlryxbxv48-python3.14-dna-features-viewer-3.1.5-dist Executing pythonRemoveTestsDir Finished executing pythonRemoveTestsDir Running phase: installCheckPhase setting known thread variables to default: 1 OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 no Makefile or custom installCheckPhase, doing nothing Running phase: pythonCatchConflictsPhase Running phase: pythonRemoveBinBytecodePhase Running phase: pythonImportsCheckPhase Executing pythonImportsCheckPhase Check whether the following modules can be imported: dna_features_viewer mkdir -p failed for path /homeless-shelter/.config/matplotlib: [Errno 13] Permission denied: '/homeless-shelter' Matplotlib created a temporary cache directory at /build/matplotlib-8b6j2ny7 because there was an issue with the default path ({configdir}); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. Running phase: pythonMetadataCheckPhase Executing pythonMetadataCheckPhase Running phase: pytestCheckPhase Executing pytestCheckPhase setting known thread variables to default: 1 OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 pytest flags: -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0 rootdir: /build/source configfile: pyproject.toml collected 20 items tests/test_basics.py .................. [ 90%] tests/test_biotools.py .. [100%] ============================== 20 passed in 6.46s ============================== Finished executing pytestCheckPhase Running phase: pytestcachePhase Running phase: pytestRemoveBytecodePhase