python3.14-biotite-1.7.1
checks.x86_64-linux.pkgs-biotite
· build #65
· raw
1Sourcing python-remove-tests-dir-hook2Sourcing python-catch-conflicts-hook.sh3Sourcing python-remove-bin-bytecode-hook.sh4Sourcing pypa-build-hook5Using pypaBuildPhase6Sourcing python-runtime-deps-check-hook7Using pythonRuntimeDepsCheckHook8Sourcing pypa-install-hook9Using pypaInstallPhase10Sourcing python-imports-check-hook.sh11Using pythonImportsCheckPhase12Sourcing python-metadata-check-hook.sh13Using pythonMetadataCheckPhase14Sourcing python-namespaces-hook15Sourcing python-catch-conflicts-hook.sh16Sourcing setuptools-rust-hook17Using checkPhaseThreadLimitHook
unpackPhase
18unpacking source archive /nix/store/aa831ygkbmvxv42nkc86z3zqsk5hgkcb-source19source root is source20Executing cargoSetupPostUnpackHook21Finished cargoSetupPostUnpackHook22setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/util.py"patchPhase
23Executing cargoSetupPostPatchHook24Validating consistency between /build/source/Cargo.lock and /build/biotite-1.7.1-vendor-vendor/Cargo.lock25Finished cargoSetupPostPatchHookconfigurePhase
26no configure script, doing nothingbuildPhase
27Executing pypaBuildPhase28Including all tracked files automatically29Creating a wheel...30pypa build flags: --no-isolation --outdir dist/ --wheel31* Getting build dependencies for wheel...32/nix/store/3zlx10nf4db20nvmiyylvkk9wrsbb3as-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:483: SetuptoolsDeprecationWarning: Cannot find any files for the given pattern.33!!3435 ********************************************************************************36 Pattern 'THIRDPARTY.yml' did not match any files.3738 By 2027-Feb-18, you need to update your project and remove deprecated calls39 or your builds will no longer be supported.40 ********************************************************************************4142!!43 for path in sorted(cls._find_pattern(pattern, enforce_match))44running egg_info45creating src/biotite.egg-info46writing src/biotite.egg-info/PKG-INFO47writing dependency_links to src/biotite.egg-info/dependency_links.txt48writing requirements to src/biotite.egg-info/requires.txt49writing top-level names to src/biotite.egg-info/top_level.txt50writing manifest file 'src/biotite.egg-info/SOURCES.txt'51/nix/store/7kj6l70lbkj7b1p9f6xlpbb30ali0m59-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.52 return get_active_overrides().subprocess_timeout53reading manifest file 'src/biotite.egg-info/SOURCES.txt'54reading manifest template 'MANIFEST.in'55warning: no files found matching 'src/biotite/structure/info/components.bcif'56adding license file 'LICENSE.rst'57writing manifest file 'src/biotite.egg-info/SOURCES.txt'58* Building wheel...59[ 1/14] Cythonizing src/biotite/sequence/align/banded.pyx60[ 2/14] Cythonizing src/biotite/sequence/align/kmeralphabet.pyx61[ 3/14] Cythonizing src/biotite/sequence/align/kmersimilarity.pyx62[ 4/14] Cythonizing src/biotite/sequence/align/kmertable.pyx63[ 5/14] Cythonizing src/biotite/sequence/align/localgapped.pyx64[ 6/14] Cythonizing src/biotite/sequence/align/localungapped.pyx65performance hint: src/biotite/sequence/align/localungapped.pyx:202:37: Index should be typed for more efficient access66performance hint: src/biotite/sequence/align/localungapped.pyx:202:56: Index should be typed for more efficient access67[ 7/14] Cythonizing src/biotite/sequence/align/multiple.pyx68[ 8/14] Cythonizing src/biotite/sequence/align/pairwise.pyx69[ 9/14] Cythonizing src/biotite/sequence/align/permutation.pyx70[10/14] Cythonizing src/biotite/sequence/align/selector.pyx71[11/14] Cythonizing src/biotite/sequence/align/tracetable.pyx72[12/14] Cythonizing src/biotite/sequence/phylo/nj.pyx73[13/14] Cythonizing src/biotite/sequence/phylo/tree.pyx74[14/14] Cythonizing src/biotite/sequence/phylo/upgma.pyx75/nix/store/3zlx10nf4db20nvmiyylvkk9wrsbb3as-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:483: SetuptoolsDeprecationWarning: Cannot find any files for the given pattern.76!!7778 ********************************************************************************79 Pattern 'THIRDPARTY.yml' did not match any files.8081 By 2027-Feb-18, you need to update your project and remove deprecated calls82 or your builds will no longer be supported.83 ********************************************************************************8485!!86 for path in sorted(cls._find_pattern(pattern, enforce_match))87running bdist_wheel88running build89running build_py90creating build/lib.linux-x86_64-cpython-314/biotite91copying src/biotite/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite92copying src/biotite/copyable.py -> build/lib.linux-x86_64-cpython-314/biotite93copying src/biotite/file.py -> build/lib.linux-x86_64-cpython-314/biotite94copying src/biotite/setup_ccd.py -> build/lib.linux-x86_64-cpython-314/biotite95copying src/biotite/typing.py -> build/lib.linux-x86_64-cpython-314/biotite96copying src/biotite/visualize.py -> build/lib.linux-x86_64-cpython-314/biotite97copying src/biotite/version.py -> build/lib.linux-x86_64-cpython-314/biotite98creating build/lib.linux-x86_64-cpython-314/biotite/database99copying src/biotite/database/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database100copying src/biotite/database/error.py -> build/lib.linux-x86_64-cpython-314/biotite/database101creating build/lib.linux-x86_64-cpython-314/biotite/interface102copying src/biotite/interface/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface103copying src/biotite/interface/version.py -> build/lib.linux-x86_64-cpython-314/biotite/interface104copying src/biotite/interface/warning.py -> build/lib.linux-x86_64-cpython-314/biotite/interface105creating build/lib.linux-x86_64-cpython-314/biotite/sequence106copying src/biotite/sequence/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence107copying src/biotite/sequence/alphabet.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence108copying src/biotite/sequence/annotation.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence109copying src/biotite/sequence/codon.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence110copying src/biotite/sequence/profile.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence111copying src/biotite/sequence/search.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence112copying src/biotite/sequence/seqtypes.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence113copying src/biotite/sequence/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence114creating build/lib.linux-x86_64-cpython-314/biotite/structure115copying src/biotite/structure/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure116copying src/biotite/structure/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure117copying src/biotite/structure/basepairs.py -> build/lib.linux-x86_64-cpython-314/biotite/structure118copying src/biotite/structure/bonds.py -> build/lib.linux-x86_64-cpython-314/biotite/structure119copying src/biotite/structure/box.py -> build/lib.linux-x86_64-cpython-314/biotite/structure120copying src/biotite/structure/celllist.py -> build/lib.linux-x86_64-cpython-314/biotite/structure121copying src/biotite/structure/chains.py -> build/lib.linux-x86_64-cpython-314/biotite/structure122copying src/biotite/structure/charges.py -> build/lib.linux-x86_64-cpython-314/biotite/structure123copying src/biotite/structure/compare.py -> build/lib.linux-x86_64-cpython-314/biotite/structure124copying src/biotite/structure/connect.py -> build/lib.linux-x86_64-cpython-314/biotite/structure125copying src/biotite/structure/density.py -> build/lib.linux-x86_64-cpython-314/biotite/structure126copying src/biotite/structure/dotbracket.py -> build/lib.linux-x86_64-cpython-314/biotite/structure127copying src/biotite/structure/error.py -> build/lib.linux-x86_64-cpython-314/biotite/structure128copying src/biotite/structure/filter.py -> build/lib.linux-x86_64-cpython-314/biotite/structure129copying src/biotite/structure/geometry.py -> build/lib.linux-x86_64-cpython-314/biotite/structure130copying src/biotite/structure/hbond.py -> build/lib.linux-x86_64-cpython-314/biotite/structure131copying src/biotite/structure/integrity.py -> build/lib.linux-x86_64-cpython-314/biotite/structure132copying src/biotite/structure/mechanics.py -> build/lib.linux-x86_64-cpython-314/biotite/structure133copying src/biotite/structure/molecules.py -> build/lib.linux-x86_64-cpython-314/biotite/structure134copying src/biotite/structure/pseudoknots.py -> build/lib.linux-x86_64-cpython-314/biotite/structure135copying src/biotite/structure/rdf.py -> build/lib.linux-x86_64-cpython-314/biotite/structure136copying src/biotite/structure/repair.py -> build/lib.linux-x86_64-cpython-314/biotite/structure137copying src/biotite/structure/residues.py -> build/lib.linux-x86_64-cpython-314/biotite/structure138copying src/biotite/structure/rings.py -> build/lib.linux-x86_64-cpython-314/biotite/structure139copying src/biotite/structure/sasa.py -> build/lib.linux-x86_64-cpython-314/biotite/structure140copying src/biotite/structure/segments.py -> build/lib.linux-x86_64-cpython-314/biotite/structure141copying src/biotite/structure/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/structure142copying src/biotite/structure/sse.py -> build/lib.linux-x86_64-cpython-314/biotite/structure143copying src/biotite/structure/tm.py -> build/lib.linux-x86_64-cpython-314/biotite/structure144copying src/biotite/structure/transform.py -> build/lib.linux-x86_64-cpython-314/biotite/structure145copying src/biotite/structure/util.py -> build/lib.linux-x86_64-cpython-314/biotite/structure146copying src/biotite/structure/superimpose.py -> build/lib.linux-x86_64-cpython-314/biotite/structure147creating build/lib.linux-x86_64-cpython-314/biotite/application148copying src/biotite/application/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application149copying src/biotite/application/application.py -> build/lib.linux-x86_64-cpython-314/biotite/application150copying src/biotite/application/localapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application151copying src/biotite/application/msaapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application152copying src/biotite/application/util.py -> build/lib.linux-x86_64-cpython-314/biotite/application153copying src/biotite/application/webapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application154creating build/lib.linux-x86_64-cpython-314/biotite/database/afdb155copying src/biotite/database/afdb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/afdb156copying src/biotite/database/afdb/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/afdb157creating build/lib.linux-x86_64-cpython-314/biotite/database/entrez158copying src/biotite/database/entrez/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez159copying src/biotite/database/entrez/check.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez160copying src/biotite/database/entrez/dbnames.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez161copying src/biotite/database/entrez/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez162copying src/biotite/database/entrez/key.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez163copying src/biotite/database/entrez/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez164creating build/lib.linux-x86_64-cpython-314/biotite/database/pubchem165copying src/biotite/database/pubchem/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem166copying src/biotite/database/pubchem/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem167copying src/biotite/database/pubchem/error.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem168copying src/biotite/database/pubchem/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem169copying src/biotite/database/pubchem/throttle.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem170creating build/lib.linux-x86_64-cpython-314/biotite/database/rcsb171copying src/biotite/database/rcsb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb172copying src/biotite/database/rcsb/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb173copying src/biotite/database/rcsb/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb174creating build/lib.linux-x86_64-cpython-314/biotite/database/uniprot175copying src/biotite/database/uniprot/check.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot176copying src/biotite/database/uniprot/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot177copying src/biotite/database/uniprot/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot178copying src/biotite/database/uniprot/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot179creating build/lib.linux-x86_64-cpython-314/biotite/interface/openmm180copying src/biotite/interface/openmm/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm181copying src/biotite/interface/openmm/state.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm182copying src/biotite/interface/openmm/system.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm183creating build/lib.linux-x86_64-cpython-314/biotite/interface/pymol184copying src/biotite/interface/pymol/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol185copying src/biotite/interface/pymol/cgo.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol186copying src/biotite/interface/pymol/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol187copying src/biotite/interface/pymol/display.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol188copying src/biotite/interface/pymol/object.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol189copying src/biotite/interface/pymol/shapes.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol190copying src/biotite/interface/pymol/startup.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol191creating build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit192copying src/biotite/interface/rdkit/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit193copying src/biotite/interface/rdkit/mol.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit194creating build/lib.linux-x86_64-cpython-314/biotite/sequence/align195copying src/biotite/sequence/align/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align196copying src/biotite/sequence/align/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align197copying src/biotite/sequence/align/buckets.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align198copying src/biotite/sequence/align/cigar.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align199copying src/biotite/sequence/align/matrix.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align200copying src/biotite/sequence/align/statistics.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align201creating build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics202copying src/biotite/sequence/graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics203copying src/biotite/sequence/graphics/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics204copying src/biotite/sequence/graphics/colorschemes.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics205copying src/biotite/sequence/graphics/dendrogram.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics206copying src/biotite/sequence/graphics/features.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics207copying src/biotite/sequence/graphics/logo.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics208copying src/biotite/sequence/graphics/plasmid.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics209creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io210copying src/biotite/sequence/io/general.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io211copying src/biotite/sequence/io/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io212creating build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo213copying src/biotite/sequence/phylo/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo214creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal215copying src/biotite/sequence/io/clustal/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal216copying src/biotite/sequence/io/clustal/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal217copying src/biotite/sequence/io/clustal/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal218creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta219copying src/biotite/sequence/io/fasta/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta220copying src/biotite/sequence/io/fasta/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta221copying src/biotite/sequence/io/fasta/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta222creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq223copying src/biotite/sequence/io/fastq/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq224copying src/biotite/sequence/io/fastq/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq225copying src/biotite/sequence/io/fastq/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq226creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank227copying src/biotite/sequence/io/genbank/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank228copying src/biotite/sequence/io/genbank/annotation.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank229copying src/biotite/sequence/io/genbank/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank230copying src/biotite/sequence/io/genbank/metadata.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank231copying src/biotite/sequence/io/genbank/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank232creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff233copying src/biotite/sequence/io/gff/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff234copying src/biotite/sequence/io/gff/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff235copying src/biotite/sequence/io/gff/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff236creating build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet237copying src/biotite/structure/alphabet/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet238copying src/biotite/structure/alphabet/encoder.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet239copying src/biotite/structure/alphabet/i3d.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet240copying src/biotite/structure/alphabet/layers.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet241copying src/biotite/structure/alphabet/pb.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet242copying src/biotite/structure/alphabet/unkerasify.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet243creating build/lib.linux-x86_64-cpython-314/biotite/structure/graphics244copying src/biotite/structure/graphics/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics245copying src/biotite/structure/graphics/rna.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics246copying src/biotite/structure/graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics247creating build/lib.linux-x86_64-cpython-314/biotite/structure/info248copying src/biotite/structure/info/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info249copying src/biotite/structure/info/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info250copying src/biotite/structure/info/bonds.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info251copying src/biotite/structure/info/ccd.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info252copying src/biotite/structure/info/groups.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info253copying src/biotite/structure/info/masses.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info254copying src/biotite/structure/info/misc.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info255copying src/biotite/structure/info/radii.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info256copying src/biotite/structure/info/standardize.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info257creating build/lib.linux-x86_64-cpython-314/biotite/structure/io258copying src/biotite/structure/io/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io259copying src/biotite/structure/io/general.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io260copying src/biotite/structure/io/trajfile.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io261copying src/biotite/structure/io/util.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io262creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd263copying src/biotite/structure/io/dcd/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd264copying src/biotite/structure/io/dcd/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd265creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro266copying src/biotite/structure/io/gro/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro267copying src/biotite/structure/io/gro/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro268creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol269copying src/biotite/structure/io/mol/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol270copying src/biotite/structure/io/mol/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol271copying src/biotite/structure/io/mol/ctab.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol272copying src/biotite/structure/io/mol/header.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol273copying src/biotite/structure/io/mol/mol.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol274copying src/biotite/structure/io/mol/sdf.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol275creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf276copying src/biotite/structure/io/netcdf/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf277copying src/biotite/structure/io/netcdf/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf278creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb279copying src/biotite/structure/io/pdb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb280copying src/biotite/structure/io/pdb/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb281copying src/biotite/structure/io/pdb/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb282creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt283copying src/biotite/structure/io/pdbqt/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt284copying src/biotite/structure/io/pdbqt/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt285copying src/biotite/structure/io/pdbqt/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt286creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx287copying src/biotite/structure/io/pdbx/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx288copying src/biotite/structure/io/pdbx/bcif.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx289copying src/biotite/structure/io/pdbx/cif.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx290copying src/biotite/structure/io/pdbx/component.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx291copying src/biotite/structure/io/pdbx/compress.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx292copying src/biotite/structure/io/pdbx/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx293copying src/biotite/structure/io/pdbx/encoding.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx294creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr295copying src/biotite/structure/io/trr/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr296copying src/biotite/structure/io/trr/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr297creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc298copying src/biotite/structure/io/xtc/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc299copying src/biotite/structure/io/xtc/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc300creating build/lib.linux-x86_64-cpython-314/biotite/application/dssp301copying src/biotite/application/dssp/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/dssp302copying src/biotite/application/dssp/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/dssp303creating build/lib.linux-x86_64-cpython-314/biotite/application/mafft304copying src/biotite/application/mafft/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/mafft305copying src/biotite/application/mafft/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/mafft306creating build/lib.linux-x86_64-cpython-314/biotite/application/muscle307copying src/biotite/application/muscle/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle308copying src/biotite/application/muscle/app3.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle309copying src/biotite/application/muscle/app5.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle310creating build/lib.linux-x86_64-cpython-314/biotite/application/sra311copying src/biotite/application/sra/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/sra312copying src/biotite/application/sra/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/sra313creating build/lib.linux-x86_64-cpython-314/biotite/application/tantan314copying src/biotite/application/tantan/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/tantan315copying src/biotite/application/tantan/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/tantan316creating build/lib.linux-x86_64-cpython-314/biotite/application/viennarna317copying src/biotite/application/viennarna/rnaalifold.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna318copying src/biotite/application/viennarna/rnafold.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna319copying src/biotite/application/viennarna/rnaplot.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna320copying src/biotite/application/viennarna/util.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna321copying src/biotite/application/viennarna/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna322creating build/lib.linux-x86_64-cpython-314/biotite/application/autodock323copying src/biotite/application/autodock/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/autodock324copying src/biotite/application/autodock/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/autodock325creating build/lib.linux-x86_64-cpython-314/biotite/application/blast326copying src/biotite/application/blast/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast327copying src/biotite/application/blast/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast328copying src/biotite/application/blast/webapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast329creating build/lib.linux-x86_64-cpython-314/biotite/application/clustalo330copying src/biotite/application/clustalo/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/clustalo331copying src/biotite/application/clustalo/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/clustalo332running egg_info333writing src/biotite.egg-info/PKG-INFO334writing dependency_links to src/biotite.egg-info/dependency_links.txt335writing requirements to src/biotite.egg-info/requires.txt336writing top-level names to src/biotite.egg-info/top_level.txt337/nix/store/7kj6l70lbkj7b1p9f6xlpbb30ali0m59-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.338 return get_active_overrides().subprocess_timeout339reading manifest file 'src/biotite.egg-info/SOURCES.txt'340reading manifest template 'MANIFEST.in'341warning: no files found matching 'src/biotite/structure/info/components.bcif'342adding license file 'LICENSE.rst'343writing manifest file 'src/biotite.egg-info/SOURCES.txt'344creating build/lib.linux-x86_64-cpython-314/rust345copying src/rust/lib.rs -> build/lib.linux-x86_64-cpython-314/rust346copying src/rust/util.rs -> build/lib.linux-x86_64-cpython-314/rust347copying src/biotite/py.typed -> build/lib.linux-x86_64-cpython-314/biotite348creating build/lib.linux-x86_64-cpython-314/rust/sequence349copying src/rust/sequence/codec.rs -> build/lib.linux-x86_64-cpython-314/rust/sequence350copying src/rust/sequence/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/sequence351creating build/lib.linux-x86_64-cpython-314/rust/structure352copying src/rust/structure/bonds.rs -> build/lib.linux-x86_64-cpython-314/rust/structure353copying src/rust/structure/celllist.rs -> build/lib.linux-x86_64-cpython-314/rust/structure354copying src/rust/structure/charges.rs -> build/lib.linux-x86_64-cpython-314/rust/structure355copying src/rust/structure/connect.rs -> build/lib.linux-x86_64-cpython-314/rust/structure356copying src/rust/structure/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure357copying src/rust/structure/sasa.rs -> build/lib.linux-x86_64-cpython-314/rust/structure358copying src/rust/structure/util.rs -> build/lib.linux-x86_64-cpython-314/rust/structure359creating build/lib.linux-x86_64-cpython-314/rust/structure/io360copying src/rust/structure/io/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io361creating build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb362copying src/rust/structure/io/pdb/file.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb363copying src/rust/structure/io/pdb/hybrid36.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb364copying src/rust/structure/io/pdb/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb365creating build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx366copying src/rust/structure/io/pdbx/encoding.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx367copying src/rust/structure/io/pdbx/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx368copying src/biotite/sequence/codon_tables.txt -> build/lib.linux-x86_64-cpython-314/biotite/sequence369copying src/biotite/structure/atoms.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure370copying src/biotite/structure/bonds.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure371copying src/biotite/structure/celllist.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure372copying src/biotite/structure/spacegroups.json -> build/lib.linux-x86_64-cpython-314/biotite/structure373copying src/biotite/structure/spacegroups.license -> build/lib.linux-x86_64-cpython-314/biotite/structure374copying src/biotite/sequence/align/banded.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align375copying src/biotite/sequence/align/banded.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align376copying src/biotite/sequence/align/banded.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align377copying src/biotite/sequence/align/kmeralphabet.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align378copying src/biotite/sequence/align/kmeralphabet.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align379copying src/biotite/sequence/align/kmeralphabet.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align380copying src/biotite/sequence/align/kmersimilarity.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align381copying src/biotite/sequence/align/kmersimilarity.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align382copying src/biotite/sequence/align/kmersimilarity.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align383copying src/biotite/sequence/align/kmertable.cpp -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align384copying src/biotite/sequence/align/kmertable.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align385copying src/biotite/sequence/align/kmertable.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align386copying src/biotite/sequence/align/localgapped.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align387copying src/biotite/sequence/align/localgapped.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align388copying src/biotite/sequence/align/localgapped.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align389copying src/biotite/sequence/align/localungapped.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align390copying src/biotite/sequence/align/localungapped.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align391copying src/biotite/sequence/align/localungapped.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align392copying src/biotite/sequence/align/multiple.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align393copying src/biotite/sequence/align/multiple.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align394copying src/biotite/sequence/align/multiple.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align395copying src/biotite/sequence/align/pairwise.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align396copying src/biotite/sequence/align/pairwise.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align397copying src/biotite/sequence/align/pairwise.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align398copying src/biotite/sequence/align/permutation.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align399copying src/biotite/sequence/align/permutation.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align400copying src/biotite/sequence/align/permutation.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align401copying src/biotite/sequence/align/primes.txt -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align402copying src/biotite/sequence/align/selector.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align403copying src/biotite/sequence/align/selector.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align404copying src/biotite/sequence/align/selector.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align405copying src/biotite/sequence/align/tracetable.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align406copying src/biotite/sequence/align/tracetable.pxd -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align407copying src/biotite/sequence/align/tracetable.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align408copying src/biotite/sequence/phylo/nj.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo409copying src/biotite/sequence/phylo/nj.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo410copying src/biotite/sequence/phylo/nj.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo411copying src/biotite/sequence/phylo/tree.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo412copying src/biotite/sequence/phylo/tree.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo413copying src/biotite/sequence/phylo/tree.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo414copying src/biotite/sequence/phylo/upgma.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo415copying src/biotite/sequence/phylo/upgma.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo416copying src/biotite/sequence/phylo/upgma.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo417creating build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data418copying src/biotite/sequence/align/matrix_data/3Di.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data419copying src/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data420copying src/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data421copying src/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data422copying src/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data423copying src/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data424copying src/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data425copying src/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data426copying src/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data427copying src/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data428copying src/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data429copying src/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data430copying src/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data431copying src/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data432copying src/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data433copying src/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data434copying src/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data435copying src/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data436copying src/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data437copying src/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data438copying src/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data439copying src/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data440copying src/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data441copying src/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data442copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data443copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data444copying src/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data445copying src/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data446copying src/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data447copying src/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data448copying src/biotite/sequence/align/matrix_data/GONNET.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data449copying src/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data450copying src/biotite/sequence/align/matrix_data/MATCH.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data451copying src/biotite/sequence/align/matrix_data/NUC.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data452copying src/biotite/sequence/align/matrix_data/PAM10.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data453copying src/biotite/sequence/align/matrix_data/PAM100.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data454copying src/biotite/sequence/align/matrix_data/PAM110.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data455copying src/biotite/sequence/align/matrix_data/PAM120.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data456copying src/biotite/sequence/align/matrix_data/PAM130.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data457copying src/biotite/sequence/align/matrix_data/PAM140.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data458copying src/biotite/sequence/align/matrix_data/PAM150.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data459copying src/biotite/sequence/align/matrix_data/PAM160.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data460copying src/biotite/sequence/align/matrix_data/PAM170.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data461copying src/biotite/sequence/align/matrix_data/PAM180.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data462copying src/biotite/sequence/align/matrix_data/PAM190.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data463copying src/biotite/sequence/align/matrix_data/PAM20.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data464copying src/biotite/sequence/align/matrix_data/PAM200.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data465copying src/biotite/sequence/align/matrix_data/PAM210.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data466copying src/biotite/sequence/align/matrix_data/PAM220.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data467copying src/biotite/sequence/align/matrix_data/PAM230.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data468copying src/biotite/sequence/align/matrix_data/PAM240.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data469copying src/biotite/sequence/align/matrix_data/PAM250.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data470copying src/biotite/sequence/align/matrix_data/PAM260.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data471copying src/biotite/sequence/align/matrix_data/PAM270.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data472copying src/biotite/sequence/align/matrix_data/PAM280.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data473copying src/biotite/sequence/align/matrix_data/PAM290.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data474copying src/biotite/sequence/align/matrix_data/PAM30.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data475copying src/biotite/sequence/align/matrix_data/PAM300.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data476copying src/biotite/sequence/align/matrix_data/PAM310.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data477copying src/biotite/sequence/align/matrix_data/PAM320.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data478copying src/biotite/sequence/align/matrix_data/PAM330.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data479copying src/biotite/sequence/align/matrix_data/PAM340.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data480copying src/biotite/sequence/align/matrix_data/PAM350.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data481copying src/biotite/sequence/align/matrix_data/PAM360.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data482copying src/biotite/sequence/align/matrix_data/PAM370.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data483copying src/biotite/sequence/align/matrix_data/PAM380.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data484copying src/biotite/sequence/align/matrix_data/PAM390.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data485copying src/biotite/sequence/align/matrix_data/PAM40.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data486copying src/biotite/sequence/align/matrix_data/PAM400.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data487copying src/biotite/sequence/align/matrix_data/PAM410.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data488copying src/biotite/sequence/align/matrix_data/PAM420.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data489copying src/biotite/sequence/align/matrix_data/PAM430.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data490copying src/biotite/sequence/align/matrix_data/PAM440.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data491copying src/biotite/sequence/align/matrix_data/PAM450.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data492copying src/biotite/sequence/align/matrix_data/PAM460.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data493copying src/biotite/sequence/align/matrix_data/PAM470.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data494copying src/biotite/sequence/align/matrix_data/PAM480.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data495copying src/biotite/sequence/align/matrix_data/PAM490.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data496copying src/biotite/sequence/align/matrix_data/PAM50.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data497copying src/biotite/sequence/align/matrix_data/PAM500.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data498copying src/biotite/sequence/align/matrix_data/PAM60.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data499copying src/biotite/sequence/align/matrix_data/PAM70.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data500copying src/biotite/sequence/align/matrix_data/PAM80.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data501copying src/biotite/sequence/align/matrix_data/PAM90.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data502copying src/biotite/sequence/align/matrix_data/PB.license -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data503copying src/biotite/sequence/align/matrix_data/PB.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data504copying src/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data505copying src/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data506copying src/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data507copying src/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data508copying src/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data509copying src/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data510creating build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes511copying src/biotite/sequence/graphics/color_schemes/3di_flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes512copying src/biotite/sequence/graphics/color_schemes/autumn.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes513copying src/biotite/sequence/graphics/color_schemes/blossom.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes514copying src/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes515copying src/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes516copying src/biotite/sequence/graphics/color_schemes/flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes517copying src/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes518copying src/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes519copying src/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes520copying src/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes521copying src/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes522copying src/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes523copying src/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes524copying src/biotite/sequence/graphics/color_schemes/ocean.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes525copying src/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes526copying src/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes527copying src/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes528copying src/biotite/sequence/graphics/color_schemes/spring.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes529copying src/biotite/sequence/graphics/color_schemes/sunset.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes530copying src/biotite/sequence/graphics/color_schemes/wither.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes531copying src/biotite/structure/alphabet/encoder_weights_3di.kerasify -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet532copying src/biotite/structure/alphabet/pb.license -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet533copying src/biotite/structure/info/atom_masses.json -> build/lib.linux-x86_64-cpython-314/biotite/structure/info534running build_ext535building 'biotite.sequence.align.banded' extension536creating build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align537gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/banded.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/banded.o538gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/banded.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so539building 'biotite.sequence.align.kmeralphabet' extension540gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmeralphabet.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmeralphabet.o541In file included from src/biotite/sequence/align/kmeralphabet.c:1401:542In function ‘__Pyx_XCLEAR_MEMVIEW’,543 inlined from ‘__pyx_pf_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_20_split’ at src/biotite/sequence/align/kmeralphabet.c:23866:3,544 inlined from ‘__pyx_pw_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_21_split’ at src/biotite/sequence/align/kmeralphabet.c:23574:13:545src/biotite/sequence/align/kmeralphabet.c:1417:46: warning: ‘__atomic_fetch_sub_4’ writing 4 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]546 1417 | #define __pyx_atomic_decr_acq_rel(value) atomic_fetch_sub_explicit(value, 1, memory_order_acq_rel)547 | ^~~~~~~~~~~~~~~~~~~~~~~~~548src/biotite/sequence/align/kmeralphabet.c:1628:13: note: in expansion of macro ‘__pyx_atomic_decr_acq_rel’549 1628 | __pyx_atomic_decr_acq_rel(__pyx_get_slice_count_pointer(memview))550 | ^~~~~~~~~~~~~~~~~~~~~~~~~551src/biotite/sequence/align/kmeralphabet.c:42072:29: note: in expansion of macro ‘__pyx_sub_acquisition_count’55242072 | old_acquisition_count = __pyx_sub_acquisition_count(memview);553 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~554In function ‘__pyx_pw_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_21_split’:555cc1: note: destination object is likely at address zero556gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmeralphabet.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so557building 'biotite.sequence.align.kmersimilarity' extension558gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmersimilarity.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmersimilarity.o559gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmersimilarity.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so560building 'biotite.sequence.align.kmertable' extension561g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/kmertable.cpp -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmertable.o562g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmertable.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so563building 'biotite.sequence.align.localgapped' extension564gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/localgapped.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localgapped.o565gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localgapped.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so566building 'biotite.sequence.align.localungapped' extension567gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/localungapped.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localungapped.o568gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localungapped.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so569building 'biotite.sequence.align.multiple' extension570gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/multiple.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/multiple.o571gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/multiple.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so572building 'biotite.sequence.align.pairwise' extension573gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/pairwise.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/pairwise.o574gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/pairwise.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so575building 'biotite.sequence.align.permutation' extension576gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/permutation.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/permutation.o577gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/permutation.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so578building 'biotite.sequence.align.selector' extension579gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/selector.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/selector.o580gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/selector.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so581building 'biotite.sequence.align.tracetable' extension582gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/align/tracetable.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/tracetable.o583gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/tracetable.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so584building 'biotite.sequence.phylo.nj' extension585creating build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo586gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/nj.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/nj.o587gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/nj.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so588building 'biotite.sequence.phylo.tree' extension589gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/tree.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/tree.o590gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/tree.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so591building 'biotite.sequence.phylo.upgma' extension592gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/include/python3.14 -c src/biotite/sequence/phylo/upgma.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/upgma.o593gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.87/lib -L/nix/store/p0ff33dca0fbkskqwrl3spvxcn5974h0-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/upgma.o -L/nix/store/b5bpi6zfajzzrwwpgba2q6li3nnya4bs-python3-3.14.7/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so594running build_rust595cargo rustc --lib --message-format=json-render-diagnostics --manifest-path Cargo.toml --release -v --features pyo3/extension-module --crate-type cdylib --target x86_64-unknown-linux-gnu596warning: failed to save last-use data597This may prevent cargo from accurately tracking what is being used in its global cache. This information is used for automatically removing unused data in the cache.598599unable to open database file: /homeless-shelter/.cargo/.global-cache600601Caused by:602 Error code 14: unable to open database file603 Compiling target-lexicon v0.13.5604 Compiling autocfg v1.5.1605 Compiling proc-macro2 v1.0.107606 Compiling quote v1.0.47607 Compiling unicode-ident v1.0.24608 Compiling libc v0.2.189609 Compiling heck v0.5.0610 Compiling rawpointer v0.2.1611 Compiling once_cell v1.21.4612 Compiling unindent v0.2.4613 Compiling indoc v2.0.7614 Compiling rustc-hash v2.1.3615 Compiling either v1.18.0616 Compiling smallvec v1.16.0617 Running `rustc --crate-name build_script_build --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=unexpected_cfgs --check-cfg 'cfg(feature, values("rust_1_40", "cargo-clippy"))' -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arch_z80", "arch_zkasm", "default", "serde", "serde_support", "std"))' -C metadata=12ed681be214ce39 -C extra-filename=-2ffe4a44fd514c8f --out-dir /build/source/target/release/build/target-lexicon-2ffe4a44fd514c8f -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`618 Running `rustc --crate-name autocfg --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/autocfg-1.5.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=009e1ae2d71cba2a -C extra-filename=-b29aa6b532941b60 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`619 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "proc-macro"))' -C metadata=4ddd3bf2da6e355d -C extra-filename=-6d6617ed9b73626d --out-dir /build/source/target/release/build/quote-6d6617ed9b73626d -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`620 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=aee344725420ad49 -C extra-filename=-3da98953dfec2a54 --out-dir /build/source/target/release/build/proc-macro2-3da98953dfec2a54 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`621 Running `rustc --crate-name unicode_ident --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/unicode-ident-1.0.24/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=35613a9a50cfa8d0 -C extra-filename=-24b354c2597e0ab2 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`622 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.189/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --allow=unused_qualifications '--warn=clippy::unnecessary_semicolon' '--allow=clippy::unnecessary_cast' '--warn=clippy::ptr_as_ptr' '--allow=clippy::non_minimal_cfg' '--allow=clippy::missing_safety_doc' '--warn=clippy::map_unwrap_or' '--warn=clippy::manual_assert' '--allow=clippy::identity_op' '--warn=clippy::explicit_iter_loop' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=e66e84e78d5314fc -C extra-filename=-af9c681df7748733 --out-dir /build/source/target/release/build/libc-af9c681df7748733 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`623 Running `rustc --crate-name heck --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/heck-0.5.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=207115b67ce9596d -C extra-filename=-2b93fc40042d2031 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`624 Running `rustc --crate-name rawpointer --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/rawpointer-0.2.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=f8859574040205e8 -C extra-filename=-5013ff441e71e220 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`625 Running `rustc --crate-name once_cell --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/once_cell-1.21.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="alloc"' --cfg 'feature="default"' --cfg 'feature="race"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc", "atomic-polyfill", "critical-section", "default", "parking_lot", "portable-atomic", "race", "std", "unstable"))' -C metadata=0be16e6eaee9b76a -C extra-filename=-cda02b276aeda687 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`626 Running `rustc --crate-name unindent --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/unindent-0.2.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=932d72a21484907d -C extra-filename=-bc062914628acc6a --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`627 Running `rustc --crate-name indoc --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/indoc-2.0.7/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=ce88fdfe66d70257 -C extra-filename=-13e7c5fbcec73ab6 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro --cap-lints allow`628 Running `rustc --crate-name rustc_hash --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/rustc-hash-2.1.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "rand", "std"))' -C metadata=42c9ffc4276c6a11 -C extra-filename=-14db18c40b41c22e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`629 Running `rustc --crate-name smallvec --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/smallvec-1.16.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arbitrary", "bincode", "const_generics", "const_new", "drain_filter", "drain_keep_rest", "impl_bincode", "malloc_size_of", "may_dangle", "serde", "specialization", "union", "unty", "write"))' -C metadata=91234725c9db0f5e -C extra-filename=-4a125e014d925d37 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`630 Running `rustc --crate-name either --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/either-1.18.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="std"' --cfg 'feature="use_std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "serde", "std", "use_std"))' -C metadata=3ebe30e84352c613 -C extra-filename=-4981e6c25c0a4b74 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`631 Compiling itertools v0.14.0632 Running `rustc --crate-name itertools --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/itertools-0.14.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="use_alloc"' --cfg 'feature="use_std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "use_alloc", "use_std"))' -C metadata=9e52dc3c802f1ff7 -C extra-filename=-b679da25cb89c966 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern either=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libeither-4981e6c25c0a4b74.rmeta --cap-lints allow -Cforce-frame-pointers=yes`633 Running `/build/source/target/release/build/quote-6d6617ed9b73626d/build-script-build`634 Compiling num-traits v0.2.19635 Compiling matrixmultiply v0.3.11636 Compiling memoffset v0.9.1637 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="i128"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "libm", "std"))' -C metadata=94a08a0b43272862 -C extra-filename=-61bc2454960b47dc --out-dir /build/source/target/release/build/num-traits-61bc2454960b47dc -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-b29aa6b532941b60.rlib --cap-lints allow`638 Running `rustc --crate-name build_script_build --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="cgemm"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("avx512", "cgemm", "constconf", "default", "num_cpus", "once_cell", "std", "thread-tree", "threading"))' -C metadata=3478fccfe3ed330d -C extra-filename=-2e25874a8497635a --out-dir /build/source/target/release/build/matrixmultiply-2e25874a8497635a -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-b29aa6b532941b60.rlib --cap-lints allow`639 Running `rustc --crate-name build_script_build --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "unstable_const", "unstable_offset_of"))' -C metadata=20b18284fa533a6a -C extra-filename=-79c46efb3ba21a25 --out-dir /build/source/target/release/build/memoffset-79c46efb3ba21a25 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-b29aa6b532941b60.rlib --cap-lints allow`640 Running `/build/source/target/release/build/proc-macro2-3da98953dfec2a54/build-script-build`641 Running `/build/source/target/release/build/libc-af9c681df7748733/build-script-build`642 Running `rustc --crate-name libc --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.189/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --allow=unused_qualifications '--warn=clippy::unnecessary_semicolon' '--allow=clippy::unnecessary_cast' '--warn=clippy::ptr_as_ptr' '--allow=clippy::non_minimal_cfg' '--allow=clippy::missing_safety_doc' '--warn=clippy::map_unwrap_or' '--warn=clippy::manual_assert' '--allow=clippy::identity_op' '--warn=clippy::explicit_iter_loop' --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=816559f477bcb06a -C extra-filename=-2e4dae809765e2a7 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg freebsd12 --check-cfg 'cfg(emscripten_old_stat_abi)' --check-cfg 'cfg(espidf_picolibc)' --check-cfg 'cfg(espidf_time32)' --check-cfg 'cfg(freebsd10)' --check-cfg 'cfg(freebsd11)' --check-cfg 'cfg(freebsd12)' --check-cfg 'cfg(freebsd13)' --check-cfg 'cfg(freebsd14)' --check-cfg 'cfg(freebsd15)' --check-cfg 'cfg(gnu_file_offset_bits64)' --check-cfg 'cfg(gnu_time_bits64)' --check-cfg 'cfg(libc_deny_warnings)' --check-cfg 'cfg(linux_time_bits64)' --check-cfg 'cfg(musl_v1_2_3)' --check-cfg 'cfg(musl32_time64)' --check-cfg 'cfg(musl_redir_time64)' --check-cfg 'cfg(vxworks_lt_25_09)' --check-cfg 'cfg(libc_pauthtest)' --check-cfg 'cfg(target_os,values("switch","aix","ohos","hurd","rtems","visionos","nuttx","cygwin","qurt","qnx"))' --check-cfg 'cfg(target_env,values("illumos","wasi","aix","ohos","nto71_iosock"))' --check-cfg 'cfg(target_arch,values("loongarch64","mips32r6","mips64r6","csky"))'`643 Running `/build/source/target/release/build/target-lexicon-2ffe4a44fd514c8f/build-script-build`644 Running `/build/source/target/release/build/memoffset-79c46efb3ba21a25/build-script-build`645 Running `/build/source/target/release/build/num-traits-61bc2454960b47dc/build-script-build`646 Running `rustc --crate-name proc_macro2 --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=6b49054ba469ee61 -C extra-filename=-4a62a3ccf1789728 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern unicode_ident=/build/source/target/release/deps/libunicode_ident-24b354c2597e0ab2.rmeta --cap-lints allow --cfg wrap_proc_macro --cfg proc_macro_span_location --cfg proc_macro_span_file --check-cfg 'cfg(fuzzing)' --check-cfg 'cfg(no_is_available)' --check-cfg 'cfg(no_literal_byte_character)' --check-cfg 'cfg(no_literal_c_string)' --check-cfg 'cfg(no_source_text)' --check-cfg 'cfg(proc_macro_span)' --check-cfg 'cfg(proc_macro_span_file)' --check-cfg 'cfg(proc_macro_span_location)' --check-cfg 'cfg(procmacro2_backtrace)' --check-cfg 'cfg(procmacro2_build_probe)' --check-cfg 'cfg(procmacro2_nightly_testing)' --check-cfg 'cfg(procmacro2_semver_exempt)' --check-cfg 'cfg(randomize_layout)' --check-cfg 'cfg(span_locations)' --check-cfg 'cfg(super_unstable)' --check-cfg 'cfg(wrap_proc_macro)'`647 Running `/build/source/target/release/build/matrixmultiply-2e25874a8497635a/build-script-build`648 Running `rustc --crate-name target_lexicon --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=unexpected_cfgs --check-cfg 'cfg(feature, values("rust_1_40", "cargo-clippy"))' -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arch_z80", "arch_zkasm", "default", "serde", "serde_support", "std"))' -C metadata=ac82e2696b02ebed -C extra-filename=-d28e530e8a41b8c6 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow --cfg 'feature="rust_1_40"'`649 Running `rustc --crate-name memoffset --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "unstable_const", "unstable_offset_of"))' -C metadata=f86acfe0a5154d02 -C extra-filename=-88412bbb96562e6e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg tuple_ty --cfg allow_clippy --cfg maybe_uninit --cfg doctests --cfg raw_ref_macros --cfg stable_const --cfg stable_offset_of`650 Running `rustc --crate-name matrixmultiply --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="cgemm"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("avx512", "cgemm", "constconf", "default", "num_cpus", "once_cell", "std", "thread-tree", "threading"))' -C metadata=39e8279a7a9becea -C extra-filename=-a9cdce1762729e6e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern rawpointer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librawpointer-5013ff441e71e220.rmeta --cap-lints allow -Cforce-frame-pointers=yes --check-cfg 'cfg(has_avx512)'`651 Running `rustc --crate-name num_traits --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="i128"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "libm", "std"))' -C metadata=c5406f59402373b3 -C extra-filename=-14f9c1453d273c9f --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg has_total_cmp --check-cfg 'cfg(has_total_cmp)'`652 Compiling pyo3-build-config v0.27.2653 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="resolve-config"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib", "resolve-config"))' -C metadata=02c912f8fa3f2de1 -C extra-filename=-25c9889f6010bcb3 --out-dir /build/source/target/release/build/pyo3-build-config-25c9889f6010bcb3 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern target_lexicon=/build/source/target/release/deps/libtarget_lexicon-d28e530e8a41b8c6.rlib --cap-lints allow`654 Running `rustc --crate-name quote --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "proc-macro"))' -C metadata=a36d2eb9ae0469ea -C extra-filename=-0de86e93dccf4fcc --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-4a62a3ccf1789728.rmeta --cap-lints allow --check-cfg 'cfg(no_diagnostic_namespace)'`655 Compiling syn v2.0.119656 Running `rustc --crate-name syn --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/syn-2.0.119/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=3b1da4d2353108c8 -C extra-filename=-419c2c0992ffe37c --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-4a62a3ccf1789728.rmeta --extern quote=/build/source/target/release/deps/libquote-0de86e93dccf4fcc.rmeta --extern unicode_ident=/build/source/target/release/deps/libunicode_ident-24b354c2597e0ab2.rmeta --cap-lints allow`657 Running `/build/source/target/release/build/pyo3-build-config-25c9889f6010bcb3/build-script-build`658 Running `rustc --crate-name pyo3_build_config --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="resolve-config"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib", "resolve-config"))' -C metadata=21db1d86bebef871 -C extra-filename=-494d95719802b2ea --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern target_lexicon=/build/source/target/release/deps/libtarget_lexicon-d28e530e8a41b8c6.rmeta --cap-lints allow`659 Compiling num-complex v0.4.6660 Compiling num-integer v0.1.47661 Running `rustc --crate-name num_complex --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-complex-0.4.6/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("bytecheck", "bytemuck", "default", "libm", "rand", "rkyv", "serde", "std"))' -C metadata=28d6463cf93986c0 -C extra-filename=-9e07f84062acf10d --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rmeta --cap-lints allow -Cforce-frame-pointers=yes`662 Running `rustc --crate-name num_integer --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-integer-0.1.47/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "std"))' -C metadata=110b2c8a0118aa3d -C extra-filename=-f46f7d1e53d8067e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rmeta --cap-lints allow -Cforce-frame-pointers=yes`663 Compiling pyo3-macros-backend v0.27.2664 Compiling pyo3-ffi v0.27.2665 Compiling pyo3 v0.27.2666 Compiling numpy v0.27.1667 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=41ff6fe5da9c5c73 -C extra-filename=-16dadac3361ab4f5 --out-dir /build/source/target/release/build/pyo3-macros-backend-16dadac3361ab4f5 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rlib --cap-lints allow`668 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib"))' -C metadata=642d46dfef992436 -C extra-filename=-0bfa3861444bd980 --out-dir /build/source/target/release/build/pyo3-ffi-0bfa3861444bd980 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rlib --cap-lints allow`669 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="indoc"' --cfg 'feature="macros"' --cfg 'feature="pyo3-macros"' --cfg 'feature="unindent"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "anyhow", "arc_lock", "auto-initialize", "bigdecimal", "bytes", "chrono", "chrono-local", "chrono-tz", "default", "either", "experimental-async", "experimental-inspect", "extension-module", "eyre", "full", "generate-import-lib", "hashbrown", "indexmap", "indoc", "inventory", "jiff-02", "lock_api", "macros", "multiple-pymethods", "nightly", "num-bigint", "num-complex", "num-rational", "ordered-float", "parking_lot", "py-clone", "pyo3-macros", "rust_decimal", "serde", "smallvec", "time", "unindent", "uuid"))' -C metadata=b22fd0aaeb1bf675 -C extra-filename=-105684b7d11f910e --out-dir /build/source/target/release/build/pyo3-105684b7d11f910e -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rlib --cap-lints allow`670 Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no '--allow=clippy::needless-lifetimes' --deny=elided-lifetimes-in-paths -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("half", "nalgebra"))' -C metadata=5cc23885212904b8 -C extra-filename=-8cffdc948ff3e233 --out-dir /build/source/target/release/build/numpy-8cffdc948ff3e233 -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rlib --cap-lints allow`671 Compiling ndarray v0.17.2672 Running `rustc --crate-name ndarray --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/ndarray-0.17.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("approx", "blas", "default", "matrixmultiply-threading", "portable-atomic-critical-section", "rayon", "serde", "std"))' -C metadata=07d838f672d94a9a -C extra-filename=-10d2c16c579a185c --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern matrixmultiply=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libmatrixmultiply-a9cdce1762729e6e.rmeta --extern num_complex=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_complex-9e07f84062acf10d.rmeta --extern num_integer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_integer-f46f7d1e53d8067e.rmeta --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rmeta --extern rawpointer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librawpointer-5013ff441e71e220.rmeta --cap-lints allow -Cforce-frame-pointers=yes`673 Running `/build/source/target/release/build/pyo3-macros-backend-16dadac3361ab4f5/build-script-build`674 Running `/build/source/target/release/build/numpy-8cffdc948ff3e233/build-script-build`675 Running `/build/source/target/release/build/pyo3-ffi-0bfa3861444bd980/build-script-build`676 Running `/build/source/target/release/build/pyo3-105684b7d11f910e/build-script-build`677 Running `rustc --crate-name pyo3_ffi --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --cfg 'feature="default"' --cfg 'feature="extension-module"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib"))' -C metadata=639d0be0407b0b93 -C extra-filename=-97f75393788077b9 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-2e4dae809765e2a7.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`678 Running `rustc --crate-name pyo3_macros_backend --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=81c26922f5560ed7 -C extra-filename=-d442d7f223cba3ae --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern heck=/build/source/target/release/deps/libheck-2b93fc40042d2031.rmeta --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-4a62a3ccf1789728.rmeta --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rmeta --extern quote=/build/source/target/release/deps/libquote-0de86e93dccf4fcc.rmeta --extern syn=/build/source/target/release/deps/libsyn-419c2c0992ffe37c.rmeta --cap-lints allow --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`679 Compiling pyo3-macros v0.27.2680 Running `rustc --crate-name pyo3_macros --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect", "multiple-pymethods"))' -C metadata=22c98453d41d0bcd -C extra-filename=-1b9dc779c9b5c236 --out-dir /build/source/target/release/deps -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-4a62a3ccf1789728.rlib --extern pyo3_macros_backend=/build/source/target/release/deps/libpyo3_macros_backend-d442d7f223cba3ae.rlib --extern quote=/build/source/target/release/deps/libquote-0de86e93dccf4fcc.rlib --extern syn=/build/source/target/release/deps/libsyn-419c2c0992ffe37c.rlib --extern proc_macro --cap-lints allow`681 Running `rustc --crate-name pyo3 --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="indoc"' --cfg 'feature="macros"' --cfg 'feature="pyo3-macros"' --cfg 'feature="unindent"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "anyhow", "arc_lock", "auto-initialize", "bigdecimal", "bytes", "chrono", "chrono-local", "chrono-tz", "default", "either", "experimental-async", "experimental-inspect", "extension-module", "eyre", "full", "generate-import-lib", "hashbrown", "indexmap", "indoc", "inventory", "jiff-02", "lock_api", "macros", "multiple-pymethods", "nightly", "num-bigint", "num-complex", "num-rational", "ordered-float", "parking_lot", "py-clone", "pyo3-macros", "rust_decimal", "serde", "smallvec", "time", "unindent", "uuid"))' -C metadata=13953ada9c66130b -C extra-filename=-12c139fc4f8acd0e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern indoc=/build/source/target/release/deps/libindoc-13e7c5fbcec73ab6.so --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-2e4dae809765e2a7.rmeta --extern memoffset=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libmemoffset-88412bbb96562e6e.rmeta --extern once_cell=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libonce_cell-cda02b276aeda687.rmeta --extern pyo3_ffi=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3_ffi-97f75393788077b9.rmeta --extern pyo3_macros=/build/source/target/release/deps/libpyo3_macros-1b9dc779c9b5c236.so --extern unindent=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libunindent-bc062914628acc6a.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`682 Running `rustc --crate-name numpy --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no '--allow=clippy::needless-lifetimes' --deny=elided-lifetimes-in-paths --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("half", "nalgebra"))' -C metadata=f2a6998ad9c639a9 -C extra-filename=-237ca85cfc32a3ef --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-2e4dae809765e2a7.rmeta --extern ndarray=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libndarray-10d2c16c579a185c.rmeta --extern num_complex=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_complex-9e07f84062acf10d.rmeta --extern num_integer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_integer-f46f7d1e53d8067e.rmeta --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rmeta --extern pyo3=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3-12c139fc4f8acd0e.rmeta --extern rustc_hash=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librustc_hash-14db18c40b41c22e.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)'`683 Compiling biotite_rust v0.0.0 (/build/source)684 Running `rustc --crate-name rust --edition=2018 src/rust/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type cdylib --emit=dep-info,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=9d98aacaf27e414f --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern itertools=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libitertools-b679da25cb89c966.rlib --extern ndarray=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libndarray-10d2c16c579a185c.rlib --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rlib --extern numpy=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnumpy-237ca85cfc32a3ef.rlib --extern pyo3=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3-12c139fc4f8acd0e.rlib --extern smallvec=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libsmallvec-4a125e014d925d37.rlib -Cforce-frame-pointers=yes`685 Finished `release` profile [optimized] target(s) in 14.53s686Copying rust artifact from target/x86_64-unknown-linux-gnu/release/librust.so to build/lib.linux-x86_64-cpython-314/biotite/rust.cpython-314-x86_64-linux-gnu.so687installing to build/bdist.linux-x86_64/wheel688running install689running install_lib690creating build/bdist.linux-x86_64/wheel691creating build/bdist.linux-x86_64/wheel/biotite692copying build/lib.linux-x86_64-cpython-314/biotite/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite693copying build/lib.linux-x86_64-cpython-314/biotite/copyable.py -> build/bdist.linux-x86_64/wheel/./biotite694copying build/lib.linux-x86_64-cpython-314/biotite/file.py -> build/bdist.linux-x86_64/wheel/./biotite695copying build/lib.linux-x86_64-cpython-314/biotite/setup_ccd.py -> build/bdist.linux-x86_64/wheel/./biotite696copying build/lib.linux-x86_64-cpython-314/biotite/typing.py -> build/bdist.linux-x86_64/wheel/./biotite697copying build/lib.linux-x86_64-cpython-314/biotite/visualize.py -> build/bdist.linux-x86_64/wheel/./biotite698copying build/lib.linux-x86_64-cpython-314/biotite/version.py -> build/bdist.linux-x86_64/wheel/./biotite699creating build/bdist.linux-x86_64/wheel/biotite/database700copying build/lib.linux-x86_64-cpython-314/biotite/database/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database701copying build/lib.linux-x86_64-cpython-314/biotite/database/error.py -> build/bdist.linux-x86_64/wheel/./biotite/database702creating build/bdist.linux-x86_64/wheel/biotite/database/afdb703copying build/lib.linux-x86_64-cpython-314/biotite/database/afdb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/afdb704copying build/lib.linux-x86_64-cpython-314/biotite/database/afdb/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/afdb705creating build/bdist.linux-x86_64/wheel/biotite/database/entrez706copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez707copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/check.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez708copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/dbnames.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez709copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez710copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/key.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez711copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez712creating build/bdist.linux-x86_64/wheel/biotite/database/pubchem713copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem714copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem715copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/error.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem716copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem717copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/throttle.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem718creating build/bdist.linux-x86_64/wheel/biotite/database/rcsb719copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb720copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb721copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb722creating build/bdist.linux-x86_64/wheel/biotite/database/uniprot723copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/check.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot724copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot725copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot726copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot727creating build/bdist.linux-x86_64/wheel/biotite/interface728copying build/lib.linux-x86_64-cpython-314/biotite/interface/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface729copying build/lib.linux-x86_64-cpython-314/biotite/interface/version.py -> build/bdist.linux-x86_64/wheel/./biotite/interface730copying build/lib.linux-x86_64-cpython-314/biotite/interface/warning.py -> build/bdist.linux-x86_64/wheel/./biotite/interface731creating build/bdist.linux-x86_64/wheel/biotite/interface/openmm732copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm733copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/state.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm734copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/system.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm735creating build/bdist.linux-x86_64/wheel/biotite/interface/pymol736copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol737copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/cgo.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol738copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol739copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/display.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol740copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/object.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol741copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/shapes.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol742copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/startup.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol743creating build/bdist.linux-x86_64/wheel/biotite/interface/rdkit744copying build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/rdkit745copying build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit/mol.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/rdkit746creating build/bdist.linux-x86_64/wheel/biotite/sequence747copying build/lib.linux-x86_64-cpython-314/biotite/sequence/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence748copying build/lib.linux-x86_64-cpython-314/biotite/sequence/alphabet.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence749copying build/lib.linux-x86_64-cpython-314/biotite/sequence/annotation.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence750copying build/lib.linux-x86_64-cpython-314/biotite/sequence/codon.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence751copying build/lib.linux-x86_64-cpython-314/biotite/sequence/profile.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence752copying build/lib.linux-x86_64-cpython-314/biotite/sequence/search.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence753copying build/lib.linux-x86_64-cpython-314/biotite/sequence/seqtypes.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence754copying build/lib.linux-x86_64-cpython-314/biotite/sequence/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence755creating build/bdist.linux-x86_64/wheel/biotite/sequence/align756copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align757copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align758copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/buckets.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align759copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/cigar.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align760copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align761copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/statistics.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align762copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align763copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align764copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align765copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align766copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align767copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align768copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align769copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align770copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align771copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpp -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align772copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align773copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align774copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align775copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align776copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align777copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align778copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align779copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align780copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align781copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align782copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align783copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align784copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align785copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align786copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align787copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align788copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align789copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/primes.txt -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align790copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align791copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align792copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align793copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align794copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.pxd -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align795copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align796creating build/bdist.linux-x86_64/wheel/biotite/sequence/align/matrix_data797copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/3Di.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data798copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data799copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data800copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data801copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data802copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data803copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data804copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data805copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data806copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data807copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data808copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data809copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data810copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data811copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data812copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data813copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data814copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data815copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data816copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data817copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data818copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data819copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data820copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data821copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data822copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data823copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data824copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data825copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data826copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data827copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/GONNET.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data828copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data829copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/MATCH.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data830copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/NUC.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data831copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM10.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data832copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM100.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data833copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM110.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data834copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM120.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data835copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM130.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data836copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM140.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data837copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM150.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data838copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM160.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data839copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM170.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data840copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM180.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data841copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM190.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data842copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM20.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data843copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM200.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data844copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM210.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data845copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM220.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data846copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM230.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data847copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM240.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data848copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM250.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data849copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM260.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data850copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM270.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data851copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM280.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data852copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM290.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data853copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM30.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data854copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM300.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data855copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM310.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data856copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM320.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data857copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM330.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data858copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM340.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data859copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM350.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data860copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM360.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data861copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM370.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data862copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM380.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data863copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM390.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data864copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM40.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data865copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM400.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data866copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM410.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data867copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM420.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data868copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM430.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data869copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM440.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data870copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM450.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data871copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM460.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data872copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM470.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data873copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM480.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data874copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM490.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data875copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM50.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data876copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM500.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data877copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM60.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data878copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM70.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data879copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM80.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data880copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM90.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data881copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PB.license -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data882copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PB.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data883copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data884copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data885copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data886copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data887copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data888copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data889copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align890copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align891copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align892copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align893copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align894copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align895copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align896copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align897copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align898copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align899copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align900creating build/bdist.linux-x86_64/wheel/biotite/sequence/graphics901copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics902copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics903copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/colorschemes.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics904copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/dendrogram.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics905copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/features.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics906copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/logo.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics907copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/plasmid.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics908creating build/bdist.linux-x86_64/wheel/biotite/sequence/graphics/color_schemes909copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/3di_flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes910copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/autumn.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes911copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/blossom.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes912copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes913copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes914copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes915copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes916copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes917copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes918copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes919copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes920copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes921copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes922copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/ocean.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes923copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes924copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes925copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes926copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/spring.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes927copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/sunset.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes928copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/wither.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes929creating build/bdist.linux-x86_64/wheel/biotite/sequence/io930copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/general.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io931copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io932creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/clustal933copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal934copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal935copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal936creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/fasta937copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta938copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta939copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta940creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/fastq941copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq942copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq943copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq944creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/genbank945copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank946copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/annotation.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank947copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank948copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/metadata.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank949copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank950creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/gff951copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff952copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff953copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff954creating build/bdist.linux-x86_64/wheel/biotite/sequence/phylo955copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo956copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo957copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo958copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo959copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo960copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo961copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo962copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo963copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo964copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo965copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo966copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo967copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo968copying build/lib.linux-x86_64-cpython-314/biotite/sequence/codon_tables.txt -> build/bdist.linux-x86_64/wheel/./biotite/sequence969creating build/bdist.linux-x86_64/wheel/biotite/structure970copying build/lib.linux-x86_64-cpython-314/biotite/structure/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure971copying build/lib.linux-x86_64-cpython-314/biotite/structure/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure972copying build/lib.linux-x86_64-cpython-314/biotite/structure/basepairs.py -> build/bdist.linux-x86_64/wheel/./biotite/structure973copying build/lib.linux-x86_64-cpython-314/biotite/structure/bonds.py -> build/bdist.linux-x86_64/wheel/./biotite/structure974copying build/lib.linux-x86_64-cpython-314/biotite/structure/box.py -> build/bdist.linux-x86_64/wheel/./biotite/structure975copying build/lib.linux-x86_64-cpython-314/biotite/structure/celllist.py -> build/bdist.linux-x86_64/wheel/./biotite/structure976copying build/lib.linux-x86_64-cpython-314/biotite/structure/chains.py -> build/bdist.linux-x86_64/wheel/./biotite/structure977copying build/lib.linux-x86_64-cpython-314/biotite/structure/charges.py -> build/bdist.linux-x86_64/wheel/./biotite/structure978copying build/lib.linux-x86_64-cpython-314/biotite/structure/compare.py -> build/bdist.linux-x86_64/wheel/./biotite/structure979copying build/lib.linux-x86_64-cpython-314/biotite/structure/connect.py -> build/bdist.linux-x86_64/wheel/./biotite/structure980copying build/lib.linux-x86_64-cpython-314/biotite/structure/density.py -> build/bdist.linux-x86_64/wheel/./biotite/structure981copying build/lib.linux-x86_64-cpython-314/biotite/structure/dotbracket.py -> build/bdist.linux-x86_64/wheel/./biotite/structure982copying build/lib.linux-x86_64-cpython-314/biotite/structure/error.py -> build/bdist.linux-x86_64/wheel/./biotite/structure983copying build/lib.linux-x86_64-cpython-314/biotite/structure/filter.py -> build/bdist.linux-x86_64/wheel/./biotite/structure984copying build/lib.linux-x86_64-cpython-314/biotite/structure/geometry.py -> build/bdist.linux-x86_64/wheel/./biotite/structure985copying build/lib.linux-x86_64-cpython-314/biotite/structure/hbond.py -> build/bdist.linux-x86_64/wheel/./biotite/structure986copying build/lib.linux-x86_64-cpython-314/biotite/structure/integrity.py -> build/bdist.linux-x86_64/wheel/./biotite/structure987copying build/lib.linux-x86_64-cpython-314/biotite/structure/mechanics.py -> build/bdist.linux-x86_64/wheel/./biotite/structure988copying build/lib.linux-x86_64-cpython-314/biotite/structure/molecules.py -> build/bdist.linux-x86_64/wheel/./biotite/structure989copying build/lib.linux-x86_64-cpython-314/biotite/structure/pseudoknots.py -> build/bdist.linux-x86_64/wheel/./biotite/structure990copying build/lib.linux-x86_64-cpython-314/biotite/structure/rdf.py -> build/bdist.linux-x86_64/wheel/./biotite/structure991copying build/lib.linux-x86_64-cpython-314/biotite/structure/repair.py -> build/bdist.linux-x86_64/wheel/./biotite/structure992copying build/lib.linux-x86_64-cpython-314/biotite/structure/residues.py -> build/bdist.linux-x86_64/wheel/./biotite/structure993copying build/lib.linux-x86_64-cpython-314/biotite/structure/rings.py -> build/bdist.linux-x86_64/wheel/./biotite/structure994copying build/lib.linux-x86_64-cpython-314/biotite/structure/sasa.py -> build/bdist.linux-x86_64/wheel/./biotite/structure995copying build/lib.linux-x86_64-cpython-314/biotite/structure/segments.py -> build/bdist.linux-x86_64/wheel/./biotite/structure996copying build/lib.linux-x86_64-cpython-314/biotite/structure/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/structure997copying build/lib.linux-x86_64-cpython-314/biotite/structure/sse.py -> build/bdist.linux-x86_64/wheel/./biotite/structure998copying build/lib.linux-x86_64-cpython-314/biotite/structure/tm.py -> build/bdist.linux-x86_64/wheel/./biotite/structure999copying build/lib.linux-x86_64-cpython-314/biotite/structure/transform.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1000copying build/lib.linux-x86_64-cpython-314/biotite/structure/util.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1001copying build/lib.linux-x86_64-cpython-314/biotite/structure/superimpose.py -> build/bdist.linux-x86_64/wheel/./biotite/structure1002creating build/bdist.linux-x86_64/wheel/biotite/structure/alphabet1003copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1004copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/encoder.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1005copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/i3d.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1006copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/layers.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1007copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/pb.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1008copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/unkerasify.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1009copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/encoder_weights_3di.kerasify -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1010copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/pb.license -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet1011creating build/bdist.linux-x86_64/wheel/biotite/structure/graphics1012copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics1013copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/rna.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics1014copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics1015creating build/bdist.linux-x86_64/wheel/biotite/structure/info1016copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1017copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1018copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/bonds.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1019copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/ccd.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1020copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/groups.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1021copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/masses.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1022copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/misc.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1023copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/radii.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1024copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/standardize.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1025copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/atom_masses.json -> build/bdist.linux-x86_64/wheel/./biotite/structure/info1026creating build/bdist.linux-x86_64/wheel/biotite/structure/io1027copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io1028copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/general.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io1029copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trajfile.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io1030copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/util.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io1031creating build/bdist.linux-x86_64/wheel/biotite/structure/io/dcd1032copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/dcd1033copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/dcd1034creating build/bdist.linux-x86_64/wheel/biotite/structure/io/gro1035copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/gro1036copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/gro1037creating build/bdist.linux-x86_64/wheel/biotite/structure/io/mol1038copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1039copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1040copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/ctab.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1041copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/header.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1042copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/mol.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1043copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/sdf.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol1044creating build/bdist.linux-x86_64/wheel/biotite/structure/io/netcdf1045copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/netcdf1046copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/netcdf1047creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdb1048copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb1049copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb1050copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb1051creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdbqt1052copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt1053copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt1054copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt1055creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdbx1056copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1057copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/bcif.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1058copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/cif.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1059copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/component.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1060copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/compress.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1061copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1062copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/encoding.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx1063creating build/bdist.linux-x86_64/wheel/biotite/structure/io/trr1064copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/trr1065copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/trr1066creating build/bdist.linux-x86_64/wheel/biotite/structure/io/xtc1067copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/xtc1068copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/xtc1069copying build/lib.linux-x86_64-cpython-314/biotite/structure/atoms.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure1070copying build/lib.linux-x86_64-cpython-314/biotite/structure/bonds.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure1071copying build/lib.linux-x86_64-cpython-314/biotite/structure/celllist.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure1072copying build/lib.linux-x86_64-cpython-314/biotite/structure/spacegroups.json -> build/bdist.linux-x86_64/wheel/./biotite/structure1073copying build/lib.linux-x86_64-cpython-314/biotite/structure/spacegroups.license -> build/bdist.linux-x86_64/wheel/./biotite/structure1074creating build/bdist.linux-x86_64/wheel/biotite/application1075copying build/lib.linux-x86_64-cpython-314/biotite/application/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application1076copying build/lib.linux-x86_64-cpython-314/biotite/application/application.py -> build/bdist.linux-x86_64/wheel/./biotite/application1077copying build/lib.linux-x86_64-cpython-314/biotite/application/localapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application1078copying build/lib.linux-x86_64-cpython-314/biotite/application/msaapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application1079copying build/lib.linux-x86_64-cpython-314/biotite/application/util.py -> build/bdist.linux-x86_64/wheel/./biotite/application1080copying build/lib.linux-x86_64-cpython-314/biotite/application/webapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application1081creating build/bdist.linux-x86_64/wheel/biotite/application/dssp1082copying build/lib.linux-x86_64-cpython-314/biotite/application/dssp/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/dssp1083copying build/lib.linux-x86_64-cpython-314/biotite/application/dssp/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/dssp1084creating build/bdist.linux-x86_64/wheel/biotite/application/mafft1085copying build/lib.linux-x86_64-cpython-314/biotite/application/mafft/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/mafft1086copying build/lib.linux-x86_64-cpython-314/biotite/application/mafft/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/mafft1087creating build/bdist.linux-x86_64/wheel/biotite/application/muscle1088copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle1089copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/app3.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle1090copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/app5.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle1091creating build/bdist.linux-x86_64/wheel/biotite/application/sra1092copying build/lib.linux-x86_64-cpython-314/biotite/application/sra/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/sra1093copying build/lib.linux-x86_64-cpython-314/biotite/application/sra/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/sra1094creating build/bdist.linux-x86_64/wheel/biotite/application/tantan1095copying build/lib.linux-x86_64-cpython-314/biotite/application/tantan/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/tantan1096copying build/lib.linux-x86_64-cpython-314/biotite/application/tantan/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/tantan1097creating build/bdist.linux-x86_64/wheel/biotite/application/viennarna1098copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnaalifold.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna1099copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnafold.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna1100copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnaplot.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna1101copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/util.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna1102copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna1103creating build/bdist.linux-x86_64/wheel/biotite/application/autodock1104copying build/lib.linux-x86_64-cpython-314/biotite/application/autodock/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/autodock1105copying build/lib.linux-x86_64-cpython-314/biotite/application/autodock/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/autodock1106creating build/bdist.linux-x86_64/wheel/biotite/application/blast1107copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast1108copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast1109copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/webapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast1110creating build/bdist.linux-x86_64/wheel/biotite/application/clustalo1111copying build/lib.linux-x86_64-cpython-314/biotite/application/clustalo/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/clustalo1112copying build/lib.linux-x86_64-cpython-314/biotite/application/clustalo/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/clustalo1113copying build/lib.linux-x86_64-cpython-314/biotite/py.typed -> build/bdist.linux-x86_64/wheel/./biotite1114copying build/lib.linux-x86_64-cpython-314/biotite/rust.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite1115creating build/bdist.linux-x86_64/wheel/rust1116copying build/lib.linux-x86_64-cpython-314/rust/lib.rs -> build/bdist.linux-x86_64/wheel/./rust1117copying build/lib.linux-x86_64-cpython-314/rust/util.rs -> build/bdist.linux-x86_64/wheel/./rust1118creating build/bdist.linux-x86_64/wheel/rust/sequence1119copying build/lib.linux-x86_64-cpython-314/rust/sequence/codec.rs -> build/bdist.linux-x86_64/wheel/./rust/sequence1120copying build/lib.linux-x86_64-cpython-314/rust/sequence/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/sequence1121creating build/bdist.linux-x86_64/wheel/rust/structure1122copying build/lib.linux-x86_64-cpython-314/rust/structure/bonds.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1123copying build/lib.linux-x86_64-cpython-314/rust/structure/celllist.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1124copying build/lib.linux-x86_64-cpython-314/rust/structure/charges.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1125copying build/lib.linux-x86_64-cpython-314/rust/structure/connect.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1126copying build/lib.linux-x86_64-cpython-314/rust/structure/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1127copying build/lib.linux-x86_64-cpython-314/rust/structure/sasa.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1128copying build/lib.linux-x86_64-cpython-314/rust/structure/util.rs -> build/bdist.linux-x86_64/wheel/./rust/structure1129creating build/bdist.linux-x86_64/wheel/rust/structure/io1130copying build/lib.linux-x86_64-cpython-314/rust/structure/io/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io1131creating build/bdist.linux-x86_64/wheel/rust/structure/io/pdb1132copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/file.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb1133copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/hybrid36.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb1134copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb1135creating build/bdist.linux-x86_64/wheel/rust/structure/io/pdbx1136copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx/encoding.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdbx1137copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdbx1138running install_egg_info1139Copying src/biotite.egg-info to build/bdist.linux-x86_64/wheel/./biotite-1.7.1-py3.14.egg-info1140running install_scripts1141creating build/bdist.linux-x86_64/wheel/biotite-1.7.1.dist-info/WHEEL1142creating '/build/source/dist/.tmp-bf8hdttr/biotite-1.7.1-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it1143adding 'biotite/__init__.py'1144adding 'biotite/copyable.py'1145adding 'biotite/file.py'1146adding 'biotite/py.typed'1147adding 'biotite/rust.cpython-314-x86_64-linux-gnu.so'1148adding 'biotite/setup_ccd.py'1149adding 'biotite/typing.py'1150adding 'biotite/version.py'1151adding 'biotite/visualize.py'1152adding 'biotite/application/__init__.py'1153adding 'biotite/application/application.py'1154adding 'biotite/application/localapp.py'1155adding 'biotite/application/msaapp.py'1156adding 'biotite/application/util.py'1157adding 'biotite/application/webapp.py'1158adding 'biotite/application/autodock/__init__.py'1159adding 'biotite/application/autodock/app.py'1160adding 'biotite/application/blast/__init__.py'1161adding 'biotite/application/blast/alignment.py'1162adding 'biotite/application/blast/webapp.py'1163adding 'biotite/application/clustalo/__init__.py'1164adding 'biotite/application/clustalo/app.py'1165adding 'biotite/application/dssp/__init__.py'1166adding 'biotite/application/dssp/app.py'1167adding 'biotite/application/mafft/__init__.py'1168adding 'biotite/application/mafft/app.py'1169adding 'biotite/application/muscle/__init__.py'1170adding 'biotite/application/muscle/app3.py'1171adding 'biotite/application/muscle/app5.py'1172adding 'biotite/application/sra/__init__.py'1173adding 'biotite/application/sra/app.py'1174adding 'biotite/application/tantan/__init__.py'1175adding 'biotite/application/tantan/app.py'1176adding 'biotite/application/viennarna/__init__.py'1177adding 'biotite/application/viennarna/rnaalifold.py'1178adding 'biotite/application/viennarna/rnafold.py'1179adding 'biotite/application/viennarna/rnaplot.py'1180adding 'biotite/application/viennarna/util.py'1181adding 'biotite/database/__init__.py'1182adding 'biotite/database/error.py'1183adding 'biotite/database/afdb/__init__.py'1184adding 'biotite/database/afdb/download.py'1185adding 'biotite/database/entrez/__init__.py'1186adding 'biotite/database/entrez/check.py'1187adding 'biotite/database/entrez/dbnames.py'1188adding 'biotite/database/entrez/download.py'1189adding 'biotite/database/entrez/key.py'1190adding 'biotite/database/entrez/query.py'1191adding 'biotite/database/pubchem/__init__.py'1192adding 'biotite/database/pubchem/download.py'1193adding 'biotite/database/pubchem/error.py'1194adding 'biotite/database/pubchem/query.py'1195adding 'biotite/database/pubchem/throttle.py'1196adding 'biotite/database/rcsb/__init__.py'1197adding 'biotite/database/rcsb/download.py'1198adding 'biotite/database/rcsb/query.py'1199adding 'biotite/database/uniprot/__init__.py'1200adding 'biotite/database/uniprot/check.py'1201adding 'biotite/database/uniprot/download.py'1202adding 'biotite/database/uniprot/query.py'1203adding 'biotite/interface/__init__.py'1204adding 'biotite/interface/version.py'1205adding 'biotite/interface/warning.py'1206adding 'biotite/interface/openmm/__init__.py'1207adding 'biotite/interface/openmm/state.py'1208adding 'biotite/interface/openmm/system.py'1209adding 'biotite/interface/pymol/__init__.py'1210adding 'biotite/interface/pymol/cgo.py'1211adding 'biotite/interface/pymol/convert.py'1212adding 'biotite/interface/pymol/display.py'1213adding 'biotite/interface/pymol/object.py'1214adding 'biotite/interface/pymol/shapes.py'1215adding 'biotite/interface/pymol/startup.py'1216adding 'biotite/interface/rdkit/__init__.py'1217adding 'biotite/interface/rdkit/mol.py'1218adding 'biotite/sequence/__init__.py'1219adding 'biotite/sequence/alphabet.py'1220adding 'biotite/sequence/annotation.py'1221adding 'biotite/sequence/codon.py'1222adding 'biotite/sequence/codon_tables.txt'1223adding 'biotite/sequence/profile.py'1224adding 'biotite/sequence/search.py'1225adding 'biotite/sequence/seqtypes.py'1226adding 'biotite/sequence/sequence.py'1227adding 'biotite/sequence/align/__init__.py'1228adding 'biotite/sequence/align/alignment.py'1229adding 'biotite/sequence/align/banded.c'1230adding 'biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so'1231adding 'biotite/sequence/align/banded.pyi'1232adding 'biotite/sequence/align/banded.pyx'1233adding 'biotite/sequence/align/buckets.py'1234adding 'biotite/sequence/align/cigar.py'1235adding 'biotite/sequence/align/kmeralphabet.c'1236adding 'biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so'1237adding 'biotite/sequence/align/kmeralphabet.pyi'1238adding 'biotite/sequence/align/kmeralphabet.pyx'1239adding 'biotite/sequence/align/kmersimilarity.c'1240adding 'biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so'1241adding 'biotite/sequence/align/kmersimilarity.pyi'1242adding 'biotite/sequence/align/kmersimilarity.pyx'1243adding 'biotite/sequence/align/kmertable.cpp'1244adding 'biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so'1245adding 'biotite/sequence/align/kmertable.pyi'1246adding 'biotite/sequence/align/kmertable.pyx'1247adding 'biotite/sequence/align/localgapped.c'1248adding 'biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so'1249adding 'biotite/sequence/align/localgapped.pyi'1250adding 'biotite/sequence/align/localgapped.pyx'1251adding 'biotite/sequence/align/localungapped.c'1252adding 'biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so'1253adding 'biotite/sequence/align/localungapped.pyi'1254adding 'biotite/sequence/align/localungapped.pyx'1255adding 'biotite/sequence/align/matrix.py'1256adding 'biotite/sequence/align/multiple.c'1257adding 'biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so'1258adding 'biotite/sequence/align/multiple.pyi'1259adding 'biotite/sequence/align/multiple.pyx'1260adding 'biotite/sequence/align/pairwise.c'1261adding 'biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so'1262adding 'biotite/sequence/align/pairwise.pyi'1263adding 'biotite/sequence/align/pairwise.pyx'1264adding 'biotite/sequence/align/permutation.c'1265adding 'biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so'1266adding 'biotite/sequence/align/permutation.pyi'1267adding 'biotite/sequence/align/permutation.pyx'1268adding 'biotite/sequence/align/primes.txt'1269adding 'biotite/sequence/align/selector.c'1270adding 'biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so'1271adding 'biotite/sequence/align/selector.pyi'1272adding 'biotite/sequence/align/selector.pyx'1273adding 'biotite/sequence/align/statistics.py'1274adding 'biotite/sequence/align/tracetable.c'1275adding 'biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so'1276adding 'biotite/sequence/align/tracetable.pxd'1277adding 'biotite/sequence/align/tracetable.pyx'1278adding 'biotite/sequence/align/matrix_data/3Di.mat'1279adding 'biotite/sequence/align/matrix_data/BLOSUM100.mat'1280adding 'biotite/sequence/align/matrix_data/BLOSUM30.mat'1281adding 'biotite/sequence/align/matrix_data/BLOSUM35.mat'1282adding 'biotite/sequence/align/matrix_data/BLOSUM40.mat'1283adding 'biotite/sequence/align/matrix_data/BLOSUM45.mat'1284adding 'biotite/sequence/align/matrix_data/BLOSUM50.mat'1285adding 'biotite/sequence/align/matrix_data/BLOSUM50_13p.mat'1286adding 'biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat'1287adding 'biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat'1288adding 'biotite/sequence/align/matrix_data/BLOSUM55.mat'1289adding 'biotite/sequence/align/matrix_data/BLOSUM60.mat'1290adding 'biotite/sequence/align/matrix_data/BLOSUM62.mat'1291adding 'biotite/sequence/align/matrix_data/BLOSUM62_13p.mat'1292adding 'biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat'1293adding 'biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat'1294adding 'biotite/sequence/align/matrix_data/BLOSUM65.mat'1295adding 'biotite/sequence/align/matrix_data/BLOSUM70.mat'1296adding 'biotite/sequence/align/matrix_data/BLOSUM75.mat'1297adding 'biotite/sequence/align/matrix_data/BLOSUM80.mat'1298adding 'biotite/sequence/align/matrix_data/BLOSUM85.mat'1299adding 'biotite/sequence/align/matrix_data/BLOSUM90.mat'1300adding 'biotite/sequence/align/matrix_data/BLOSUMN.mat'1301adding 'biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat'1302adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat'1303adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat'1304adding 'biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat'1305adding 'biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat'1306adding 'biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat'1307adding 'biotite/sequence/align/matrix_data/DAYHOFF.mat'1308adding 'biotite/sequence/align/matrix_data/GONNET.mat'1309adding 'biotite/sequence/align/matrix_data/IDENTITY.mat'1310adding 'biotite/sequence/align/matrix_data/MATCH.mat'1311adding 'biotite/sequence/align/matrix_data/NUC.mat'1312adding 'biotite/sequence/align/matrix_data/PAM10.mat'1313adding 'biotite/sequence/align/matrix_data/PAM100.mat'1314adding 'biotite/sequence/align/matrix_data/PAM110.mat'1315adding 'biotite/sequence/align/matrix_data/PAM120.mat'1316adding 'biotite/sequence/align/matrix_data/PAM130.mat'1317adding 'biotite/sequence/align/matrix_data/PAM140.mat'1318adding 'biotite/sequence/align/matrix_data/PAM150.mat'1319adding 'biotite/sequence/align/matrix_data/PAM160.mat'1320adding 'biotite/sequence/align/matrix_data/PAM170.mat'1321adding 'biotite/sequence/align/matrix_data/PAM180.mat'1322adding 'biotite/sequence/align/matrix_data/PAM190.mat'1323adding 'biotite/sequence/align/matrix_data/PAM20.mat'1324adding 'biotite/sequence/align/matrix_data/PAM200.mat'1325adding 'biotite/sequence/align/matrix_data/PAM210.mat'1326adding 'biotite/sequence/align/matrix_data/PAM220.mat'1327adding 'biotite/sequence/align/matrix_data/PAM230.mat'1328adding 'biotite/sequence/align/matrix_data/PAM240.mat'1329adding 'biotite/sequence/align/matrix_data/PAM250.mat'1330adding 'biotite/sequence/align/matrix_data/PAM260.mat'1331adding 'biotite/sequence/align/matrix_data/PAM270.mat'1332adding 'biotite/sequence/align/matrix_data/PAM280.mat'1333adding 'biotite/sequence/align/matrix_data/PAM290.mat'1334adding 'biotite/sequence/align/matrix_data/PAM30.mat'1335adding 'biotite/sequence/align/matrix_data/PAM300.mat'1336adding 'biotite/sequence/align/matrix_data/PAM310.mat'1337adding 'biotite/sequence/align/matrix_data/PAM320.mat'1338adding 'biotite/sequence/align/matrix_data/PAM330.mat'1339adding 'biotite/sequence/align/matrix_data/PAM340.mat'1340adding 'biotite/sequence/align/matrix_data/PAM350.mat'1341adding 'biotite/sequence/align/matrix_data/PAM360.mat'1342adding 'biotite/sequence/align/matrix_data/PAM370.mat'1343adding 'biotite/sequence/align/matrix_data/PAM380.mat'1344adding 'biotite/sequence/align/matrix_data/PAM390.mat'1345adding 'biotite/sequence/align/matrix_data/PAM40.mat'1346adding 'biotite/sequence/align/matrix_data/PAM400.mat'1347adding 'biotite/sequence/align/matrix_data/PAM410.mat'1348adding 'biotite/sequence/align/matrix_data/PAM420.mat'1349adding 'biotite/sequence/align/matrix_data/PAM430.mat'1350adding 'biotite/sequence/align/matrix_data/PAM440.mat'1351adding 'biotite/sequence/align/matrix_data/PAM450.mat'1352adding 'biotite/sequence/align/matrix_data/PAM460.mat'1353adding 'biotite/sequence/align/matrix_data/PAM470.mat'1354adding 'biotite/sequence/align/matrix_data/PAM480.mat'1355adding 'biotite/sequence/align/matrix_data/PAM490.mat'1356adding 'biotite/sequence/align/matrix_data/PAM50.mat'1357adding 'biotite/sequence/align/matrix_data/PAM500.mat'1358adding 'biotite/sequence/align/matrix_data/PAM60.mat'1359adding 'biotite/sequence/align/matrix_data/PAM70.mat'1360adding 'biotite/sequence/align/matrix_data/PAM80.mat'1361adding 'biotite/sequence/align/matrix_data/PAM90.mat'1362adding 'biotite/sequence/align/matrix_data/PB.license'1363adding 'biotite/sequence/align/matrix_data/PB.mat'1364adding 'biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat'1365adding 'biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat'1366adding 'biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat'1367adding 'biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat'1368adding 'biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat'1369adding 'biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat'1370adding 'biotite/sequence/graphics/__init__.py'1371adding 'biotite/sequence/graphics/alignment.py'1372adding 'biotite/sequence/graphics/colorschemes.py'1373adding 'biotite/sequence/graphics/dendrogram.py'1374adding 'biotite/sequence/graphics/features.py'1375adding 'biotite/sequence/graphics/logo.py'1376adding 'biotite/sequence/graphics/plasmid.py'1377adding 'biotite/sequence/graphics/color_schemes/3di_flower.json'1378adding 'biotite/sequence/graphics/color_schemes/autumn.json'1379adding 'biotite/sequence/graphics/color_schemes/blossom.json'1380adding 'biotite/sequence/graphics/color_schemes/clustalx_dna.json'1381adding 'biotite/sequence/graphics/color_schemes/clustalx_protein.json'1382adding 'biotite/sequence/graphics/color_schemes/flower.json'1383adding 'biotite/sequence/graphics/color_schemes/jalview_buried.json'1384adding 'biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json'1385adding 'biotite/sequence/graphics/color_schemes/jalview_prop_helix.json'1386adding 'biotite/sequence/graphics/color_schemes/jalview_prop_strand.json'1387adding 'biotite/sequence/graphics/color_schemes/jalview_prop_turn.json'1388adding 'biotite/sequence/graphics/color_schemes/jalview_taylor.json'1389adding 'biotite/sequence/graphics/color_schemes/jalview_zappo.json'1390adding 'biotite/sequence/graphics/color_schemes/ocean.json'1391adding 'biotite/sequence/graphics/color_schemes/pb_flower.json'1392adding 'biotite/sequence/graphics/color_schemes/rainbow_dna.json'1393adding 'biotite/sequence/graphics/color_schemes/rainbow_protein.json'1394adding 'biotite/sequence/graphics/color_schemes/spring.json'1395adding 'biotite/sequence/graphics/color_schemes/sunset.json'1396adding 'biotite/sequence/graphics/color_schemes/wither.json'1397adding 'biotite/sequence/io/__init__.py'1398adding 'biotite/sequence/io/general.py'1399adding 'biotite/sequence/io/clustal/__init__.py'1400adding 'biotite/sequence/io/clustal/convert.py'1401adding 'biotite/sequence/io/clustal/file.py'1402adding 'biotite/sequence/io/fasta/__init__.py'1403adding 'biotite/sequence/io/fasta/convert.py'1404adding 'biotite/sequence/io/fasta/file.py'1405adding 'biotite/sequence/io/fastq/__init__.py'1406adding 'biotite/sequence/io/fastq/convert.py'1407adding 'biotite/sequence/io/fastq/file.py'1408adding 'biotite/sequence/io/genbank/__init__.py'1409adding 'biotite/sequence/io/genbank/annotation.py'1410adding 'biotite/sequence/io/genbank/file.py'1411adding 'biotite/sequence/io/genbank/metadata.py'1412adding 'biotite/sequence/io/genbank/sequence.py'1413adding 'biotite/sequence/io/gff/__init__.py'1414adding 'biotite/sequence/io/gff/convert.py'1415adding 'biotite/sequence/io/gff/file.py'1416adding 'biotite/sequence/phylo/__init__.py'1417adding 'biotite/sequence/phylo/nj.c'1418adding 'biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so'1419adding 'biotite/sequence/phylo/nj.pyi'1420adding 'biotite/sequence/phylo/nj.pyx'1421adding 'biotite/sequence/phylo/tree.c'1422adding 'biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so'1423adding 'biotite/sequence/phylo/tree.pyi'1424adding 'biotite/sequence/phylo/tree.pyx'1425adding 'biotite/sequence/phylo/upgma.c'1426adding 'biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so'1427adding 'biotite/sequence/phylo/upgma.pyi'1428adding 'biotite/sequence/phylo/upgma.pyx'1429adding 'biotite/structure/__init__.py'1430adding 'biotite/structure/atoms.py'1431adding 'biotite/structure/atoms.pyi'1432adding 'biotite/structure/basepairs.py'1433adding 'biotite/structure/bonds.py'1434adding 'biotite/structure/bonds.pyi'1435adding 'biotite/structure/box.py'1436adding 'biotite/structure/celllist.py'1437adding 'biotite/structure/celllist.pyi'1438adding 'biotite/structure/chains.py'1439adding 'biotite/structure/charges.py'1440adding 'biotite/structure/compare.py'1441adding 'biotite/structure/connect.py'1442adding 'biotite/structure/density.py'1443adding 'biotite/structure/dotbracket.py'1444adding 'biotite/structure/error.py'1445adding 'biotite/structure/filter.py'1446adding 'biotite/structure/geometry.py'1447adding 'biotite/structure/hbond.py'1448adding 'biotite/structure/integrity.py'1449adding 'biotite/structure/mechanics.py'1450adding 'biotite/structure/molecules.py'1451adding 'biotite/structure/pseudoknots.py'1452adding 'biotite/structure/rdf.py'1453adding 'biotite/structure/repair.py'1454adding 'biotite/structure/residues.py'1455adding 'biotite/structure/rings.py'1456adding 'biotite/structure/sasa.py'1457adding 'biotite/structure/segments.py'1458adding 'biotite/structure/sequence.py'1459adding 'biotite/structure/spacegroups.json'1460adding 'biotite/structure/spacegroups.license'1461adding 'biotite/structure/sse.py'1462adding 'biotite/structure/superimpose.py'1463adding 'biotite/structure/tm.py'1464adding 'biotite/structure/transform.py'1465adding 'biotite/structure/util.py'1466adding 'biotite/structure/alphabet/__init__.py'1467adding 'biotite/structure/alphabet/encoder.py'1468adding 'biotite/structure/alphabet/encoder_weights_3di.kerasify'1469adding 'biotite/structure/alphabet/i3d.py'1470adding 'biotite/structure/alphabet/layers.py'1471adding 'biotite/structure/alphabet/pb.license'1472adding 'biotite/structure/alphabet/pb.py'1473adding 'biotite/structure/alphabet/unkerasify.py'1474adding 'biotite/structure/graphics/__init__.py'1475adding 'biotite/structure/graphics/atoms.py'1476adding 'biotite/structure/graphics/rna.py'1477adding 'biotite/structure/info/__init__.py'1478adding 'biotite/structure/info/atom_masses.json'1479adding 'biotite/structure/info/atoms.py'1480adding 'biotite/structure/info/bonds.py'1481adding 'biotite/structure/info/ccd.py'1482adding 'biotite/structure/info/groups.py'1483adding 'biotite/structure/info/masses.py'1484adding 'biotite/structure/info/misc.py'1485adding 'biotite/structure/info/radii.py'1486adding 'biotite/structure/info/standardize.py'1487adding 'biotite/structure/io/__init__.py'1488adding 'biotite/structure/io/general.py'1489adding 'biotite/structure/io/trajfile.py'1490adding 'biotite/structure/io/util.py'1491adding 'biotite/structure/io/dcd/__init__.py'1492adding 'biotite/structure/io/dcd/file.py'1493adding 'biotite/structure/io/gro/__init__.py'1494adding 'biotite/structure/io/gro/file.py'1495adding 'biotite/structure/io/mol/__init__.py'1496adding 'biotite/structure/io/mol/convert.py'1497adding 'biotite/structure/io/mol/ctab.py'1498adding 'biotite/structure/io/mol/header.py'1499adding 'biotite/structure/io/mol/mol.py'1500adding 'biotite/structure/io/mol/sdf.py'1501adding 'biotite/structure/io/netcdf/__init__.py'1502adding 'biotite/structure/io/netcdf/file.py'1503adding 'biotite/structure/io/pdb/__init__.py'1504adding 'biotite/structure/io/pdb/convert.py'1505adding 'biotite/structure/io/pdb/file.py'1506adding 'biotite/structure/io/pdbqt/__init__.py'1507adding 'biotite/structure/io/pdbqt/convert.py'1508adding 'biotite/structure/io/pdbqt/file.py'1509adding 'biotite/structure/io/pdbx/__init__.py'1510adding 'biotite/structure/io/pdbx/bcif.py'1511adding 'biotite/structure/io/pdbx/cif.py'1512adding 'biotite/structure/io/pdbx/component.py'1513adding 'biotite/structure/io/pdbx/compress.py'1514adding 'biotite/structure/io/pdbx/convert.py'1515adding 'biotite/structure/io/pdbx/encoding.py'1516adding 'biotite/structure/io/trr/__init__.py'1517adding 'biotite/structure/io/trr/file.py'1518adding 'biotite/structure/io/xtc/__init__.py'1519adding 'biotite/structure/io/xtc/file.py'1520adding 'biotite-1.7.1.dist-info/licenses/LICENSE.rst'1521adding 'rust/lib.rs'1522adding 'rust/util.rs'1523adding 'rust/sequence/codec.rs'1524adding 'rust/sequence/mod.rs'1525adding 'rust/structure/bonds.rs'1526adding 'rust/structure/celllist.rs'1527adding 'rust/structure/charges.rs'1528adding 'rust/structure/connect.rs'1529adding 'rust/structure/mod.rs'1530adding 'rust/structure/sasa.rs'1531adding 'rust/structure/util.rs'1532adding 'rust/structure/io/mod.rs'1533adding 'rust/structure/io/pdb/file.rs'1534adding 'rust/structure/io/pdb/hybrid36.rs'1535adding 'rust/structure/io/pdb/mod.rs'1536adding 'rust/structure/io/pdbx/encoding.rs'1537adding 'rust/structure/io/pdbx/mod.rs'1538adding 'biotite-1.7.1.dist-info/METADATA'1539adding 'biotite-1.7.1.dist-info/WHEEL'1540adding 'biotite-1.7.1.dist-info/top_level.txt'1541adding 'biotite-1.7.1.dist-info/RECORD'1542removing build/bdist.linux-x86_64/wheel1543Successfully built biotite-1.7.1-cp314-cp314-linux_x86_64.whl1544Finished creating a wheel...1545Finished executing pypaBuildPhase1546buildPhase completed in 3 minutes 10 secondspythonRuntimeDepsCheckHook
1547Executing pythonRuntimeDepsCheck1548Checking runtime dependencies for biotite-1.7.1-cp314-cp314-linux_x86_64.whl1549Finished executing pythonRuntimeDepsCheckinstallPhase
1550Executing pypaInstallPhase1551Successfully installed biotite-1.7.1-cp314-cp314-linux_x86_64.whl1552Finished executing pypaInstallPhasepythonOutputDistPhase
1553Executing pythonOutputDistPhase1554Finished executing pythonOutputDistPhasefixupPhase
1555shrinking RPATHs of ELF executables and libraries in /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.11556shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/rust.cpython-314-x86_64-linux-gnu.so1557shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so1558shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so1559shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so1560shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so1561shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so1562shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so1563shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so1564shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so1565shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so1566shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so1567shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so1568shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so1569shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so1570shrinking /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so1571checking for references to /build/ in /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1...1572patching script interpreter paths in /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.11573stripping (with command strip and flags -S -p) in /nix/store/zk998k4kk3jchncc6npgkg89d27nqz7j-python3.14-biotite-1.7.1/lib1574shrinking RPATHs of ELF executables and libraries in /nix/store/zvqffzyvfh9aihhqg6crp9136pb6hvlf-python3.14-biotite-1.7.1-dist1575checking for references to /build/ in /nix/store/zvqffzyvfh9aihhqg6crp9136pb6hvlf-python3.14-biotite-1.7.1-dist...1576patching script interpreter paths in /nix/store/zvqffzyvfh9aihhqg6crp9136pb6hvlf-python3.14-biotite-1.7.1-dist1577Executing pythonRemoveTestsDir1578Finished executing pythonRemoveTestsDirpythonImportsCheckPhase
1579Executing pythonImportsCheckPhase1580Check whether the following modules can be imported: biotite biotite.sequence biotite.structurepythonMetadataCheckPhase
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