this derivation will be built: /nix/store/cja6k155a1sd988zdhi3dz185mdvyqrz-python3.14-snapgene-reader-0.1.23.drv these 6 paths will be fetched (5.1 MiB download, 29.2 MiB unpacked): /nix/store/08l53laxz5d5qqdcvvzjaky80d7jxc0r-pytest-check-hook /nix/store/47cv8gslxwz2i759ln4swcvgzz5vy100-python3.14-biopython-1.86 /nix/store/bvlf6xx0rxkxcz7swhdnss8bl27zb5b4-python3.14-html2text-2025.4.15 /nix/store/4i0bzsw6zm130iivaafsxpdiwbyv5bak-python3.14-iniconfig-2.3.0 /nix/store/kbhbia91jrab9l3zz3y0xml1ml04py90-python3.14-pluggy-1.6.0 /nix/store/6aamjai1shjzq2bmg67pfkimd3l9cj76-python3.14-pytest-9.1.1 building '/nix/store/cja6k155a1sd988zdhi3dz185mdvyqrz-python3.14-snapgene-reader-0.1.23.drv' python3.14-snapgene-reader-0.1.23> Sourcing python-remove-tests-dir-hook python3.14-snapgene-reader-0.1.23> Sourcing python-catch-conflicts-hook.sh python3.14-snapgene-reader-0.1.23> Sourcing python-remove-bin-bytecode-hook.sh python3.14-snapgene-reader-0.1.23> Sourcing pypa-build-hook python3.14-snapgene-reader-0.1.23> Using pypaBuildPhase python3.14-snapgene-reader-0.1.23> Sourcing python-runtime-deps-check-hook python3.14-snapgene-reader-0.1.23> Using pythonRuntimeDepsCheckHook python3.14-snapgene-reader-0.1.23> Sourcing pypa-install-hook python3.14-snapgene-reader-0.1.23> Using pypaInstallPhase python3.14-snapgene-reader-0.1.23> Sourcing python-imports-check-hook.sh python3.14-snapgene-reader-0.1.23> Using pythonImportsCheckPhase python3.14-snapgene-reader-0.1.23> Sourcing python-metadata-check-hook.sh python3.14-snapgene-reader-0.1.23> Using pythonMetadataCheckPhase python3.14-snapgene-reader-0.1.23> Sourcing python-namespaces-hook python3.14-snapgene-reader-0.1.23> Sourcing python-catch-conflicts-hook.sh python3.14-snapgene-reader-0.1.23> Sourcing pytest-check-hook python3.14-snapgene-reader-0.1.23> Using pytestCheckPhase python3.14-snapgene-reader-0.1.23> Using checkPhaseThreadLimitHook python3.14-snapgene-reader-0.1.23> Running phase: unpackPhase python3.14-snapgene-reader-0.1.23> unpacking source archive /nix/store/ki24qyjvmzxraphqlbnh2hvfgx8d55w0-source python3.14-snapgene-reader-0.1.23> source root is source python3.14-snapgene-reader-0.1.23> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/test_samples/test_with_a_single_feature_ie_no_features_list.dna" python3.14-snapgene-reader-0.1.23> Running phase: patchPhase python3.14-snapgene-reader-0.1.23> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-snapgene-reader-0.1.23> Running phase: configurePhase python3.14-snapgene-reader-0.1.23> no configure script, doing nothing python3.14-snapgene-reader-0.1.23> Running phase: buildPhase python3.14-snapgene-reader-0.1.23> Executing pypaBuildPhase python3.14-snapgene-reader-0.1.23> Creating a wheel... python3.14-snapgene-reader-0.1.23> pypa build flags: --no-isolation --outdir dist/ --wheel python3.14-snapgene-reader-0.1.23> * Getting build dependencies for wheel... python3.14-snapgene-reader-0.1.23> running egg_info python3.14-snapgene-reader-0.1.23> creating snapgene_reader.egg-info python3.14-snapgene-reader-0.1.23> writing snapgene_reader.egg-info/PKG-INFO python3.14-snapgene-reader-0.1.23> writing dependency_links to snapgene_reader.egg-info/dependency_links.txt python3.14-snapgene-reader-0.1.23> writing requirements to snapgene_reader.egg-info/requires.txt python3.14-snapgene-reader-0.1.23> writing top-level names to snapgene_reader.egg-info/top_level.txt python3.14-snapgene-reader-0.1.23> writing manifest file 'snapgene_reader.egg-info/SOURCES.txt' python3.14-snapgene-reader-0.1.23> reading manifest file 'snapgene_reader.egg-info/SOURCES.txt' python3.14-snapgene-reader-0.1.23> adding license file 'LICENSE' python3.14-snapgene-reader-0.1.23> writing manifest file 'snapgene_reader.egg-info/SOURCES.txt' python3.14-snapgene-reader-0.1.23> * Building wheel... python3.14-snapgene-reader-0.1.23> running bdist_wheel python3.14-snapgene-reader-0.1.23> running build python3.14-snapgene-reader-0.1.23> running build_py python3.14-snapgene-reader-0.1.23> creating build/lib/snapgene_reader python3.14-snapgene-reader-0.1.23> copying snapgene_reader/__init__.py -> build/lib/snapgene_reader python3.14-snapgene-reader-0.1.23> copying snapgene_reader/snapgene_reader.py -> build/lib/snapgene_reader python3.14-snapgene-reader-0.1.23> copying snapgene_reader/version.py -> build/lib/snapgene_reader python3.14-snapgene-reader-0.1.23> running egg_info python3.14-snapgene-reader-0.1.23> writing snapgene_reader.egg-info/PKG-INFO python3.14-snapgene-reader-0.1.23> writing dependency_links to snapgene_reader.egg-info/dependency_links.txt python3.14-snapgene-reader-0.1.23> writing requirements to snapgene_reader.egg-info/requires.txt python3.14-snapgene-reader-0.1.23> writing top-level names to snapgene_reader.egg-info/top_level.txt python3.14-snapgene-reader-0.1.23> reading manifest file 'snapgene_reader.egg-info/SOURCES.txt' python3.14-snapgene-reader-0.1.23> adding license file 'LICENSE' python3.14-snapgene-reader-0.1.23> writing manifest file 'snapgene_reader.egg-info/SOURCES.txt' python3.14-snapgene-reader-0.1.23> installing to build/bdist.linux-x86_64/wheel python3.14-snapgene-reader-0.1.23> running install python3.14-snapgene-reader-0.1.23> running install_lib python3.14-snapgene-reader-0.1.23> creating build/bdist.linux-x86_64/wheel python3.14-snapgene-reader-0.1.23> creating build/bdist.linux-x86_64/wheel/snapgene_reader python3.14-snapgene-reader-0.1.23> copying build/lib/snapgene_reader/__init__.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader python3.14-snapgene-reader-0.1.23> copying build/lib/snapgene_reader/snapgene_reader.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader python3.14-snapgene-reader-0.1.23> copying build/lib/snapgene_reader/version.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader python3.14-snapgene-reader-0.1.23> running install_egg_info python3.14-snapgene-reader-0.1.23> Copying snapgene_reader.egg-info to build/bdist.linux-x86_64/wheel/./snapgene_reader-0.1.23-py3.14.egg-info python3.14-snapgene-reader-0.1.23> running install_scripts python3.14-snapgene-reader-0.1.23> creating build/bdist.linux-x86_64/wheel/snapgene_reader-0.1.23.dist-info/WHEEL python3.14-snapgene-reader-0.1.23> creating '/build/source/dist/.tmp-s_wxwjmd/snapgene_reader-0.1.23-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader/__init__.py' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader/snapgene_reader.py' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader/version.py' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/licenses/LICENSE' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/METADATA' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/WHEEL' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/top_level.txt' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/RECORD' python3.14-snapgene-reader-0.1.23> removing build/bdist.linux-x86_64/wheel python3.14-snapgene-reader-0.1.23> Successfully built snapgene_reader-0.1.23-py3-none-any.whl python3.14-snapgene-reader-0.1.23> Finished creating a wheel... python3.14-snapgene-reader-0.1.23> Finished executing pypaBuildPhase python3.14-snapgene-reader-0.1.23> Running phase: pythonRuntimeDepsCheckHook python3.14-snapgene-reader-0.1.23> Executing pythonRuntimeDepsCheck python3.14-snapgene-reader-0.1.23> Checking runtime dependencies for snapgene_reader-0.1.23-py3-none-any.whl python3.14-snapgene-reader-0.1.23> Finished executing pythonRuntimeDepsCheck python3.14-snapgene-reader-0.1.23> Running phase: installPhase python3.14-snapgene-reader-0.1.23> Executing pypaInstallPhase python3.14-snapgene-reader-0.1.23> Successfully installed snapgene_reader-0.1.23-py3-none-any.whl python3.14-snapgene-reader-0.1.23> Finished executing pypaInstallPhase python3.14-snapgene-reader-0.1.23> Running phase: pythonOutputDistPhase python3.14-snapgene-reader-0.1.23> Executing pythonOutputDistPhase python3.14-snapgene-reader-0.1.23> Finished executing pythonOutputDistPhase python3.14-snapgene-reader-0.1.23> Running phase: fixupPhase python3.14-snapgene-reader-0.1.23> shrinking RPATHs of ELF executables and libraries in /nix/store/3623cskgzpcncdfwicgaqvw5ci5hk5x0-python3.14-snapgene-reader-0.1.23 python3.14-snapgene-reader-0.1.23> checking for references to /build/ in /nix/store/3623cskgzpcncdfwicgaqvw5ci5hk5x0-python3.14-snapgene-reader-0.1.23... python3.14-snapgene-reader-0.1.23> patching script interpreter paths in /nix/store/3623cskgzpcncdfwicgaqvw5ci5hk5x0-python3.14-snapgene-reader-0.1.23 python3.14-snapgene-reader-0.1.23> stripping (with command strip and flags -S -p) in /nix/store/3623cskgzpcncdfwicgaqvw5ci5hk5x0-python3.14-snapgene-reader-0.1.23/lib python3.14-snapgene-reader-0.1.23> shrinking RPATHs of ELF executables and libraries in /nix/store/r22zda376ry5rj6ph3x48k873cmxgn73-python3.14-snapgene-reader-0.1.23-dist python3.14-snapgene-reader-0.1.23> checking for references to /build/ in /nix/store/r22zda376ry5rj6ph3x48k873cmxgn73-python3.14-snapgene-reader-0.1.23-dist... python3.14-snapgene-reader-0.1.23> patching script interpreter paths in /nix/store/r22zda376ry5rj6ph3x48k873cmxgn73-python3.14-snapgene-reader-0.1.23-dist python3.14-snapgene-reader-0.1.23> Executing pythonRemoveTestsDir python3.14-snapgene-reader-0.1.23> Finished executing pythonRemoveTestsDir python3.14-snapgene-reader-0.1.23> Running phase: installCheckPhase python3.14-snapgene-reader-0.1.23> setting known thread variables to default: 1 python3.14-snapgene-reader-0.1.23> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 python3.14-snapgene-reader-0.1.23> no Makefile or custom installCheckPhase, doing nothing python3.14-snapgene-reader-0.1.23> Running phase: pythonCatchConflictsPhase python3.14-snapgene-reader-0.1.23> Running phase: pythonRemoveBinBytecodePhase python3.14-snapgene-reader-0.1.23> Running phase: pythonImportsCheckPhase python3.14-snapgene-reader-0.1.23> Executing pythonImportsCheckPhase python3.14-snapgene-reader-0.1.23> Check whether the following modules can be imported: snapgene_reader python3.14-snapgene-reader-0.1.23> Running phase: pythonMetadataCheckPhase python3.14-snapgene-reader-0.1.23> Executing pythonMetadataCheckPhase python3.14-snapgene-reader-0.1.23> Running phase: pytestCheckPhase python3.14-snapgene-reader-0.1.23> Executing pytestCheckPhase python3.14-snapgene-reader-0.1.23> setting known thread variables to default: 1 python3.14-snapgene-reader-0.1.23> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 python3.14-snapgene-reader-0.1.23> pytest flags: -m pytest tests python3.14-snapgene-reader-0.1.23> ============================= test session starts ============================== python3.14-snapgene-reader-0.1.23> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0 python3.14-snapgene-reader-0.1.23> rootdir: /build/source python3.14-snapgene-reader-0.1.23> configfile: pyproject.toml python3.14-snapgene-reader-0.1.23> collected 2 items python3.14-snapgene-reader-0.1.23> python3.14-snapgene-reader-0.1.23> tests/test_general.py .. [100%] python3.14-snapgene-reader-0.1.23> python3.14-snapgene-reader-0.1.23> =============================== warnings summary =============================== python3.14-snapgene-reader-0.1.23> tests/test_general.py::test_snapgene_file_to_gbk python3.14-snapgene-reader-0.1.23> /nix/store/47cv8gslxwz2i759ln4swcvgzz5vy100-python3.14-biopython-1.86/lib/python3.14/site-packages/Bio/GenBank/__init__.py:724: BiopythonParserWarning: negative starting position in feature location '0..4'; setting feature location to None. python3.14-snapgene-reader-0.1.23> warnings.warn( python3.14-snapgene-reader-0.1.23> python3.14-snapgene-reader-0.1.23> tests/test_general.py::test_snapgene_file_to_gbk python3.14-snapgene-reader-0.1.23> /nix/store/47cv8gslxwz2i759ln4swcvgzz5vy100-python3.14-biopython-1.86/lib/python3.14/site-packages/Bio/GenBank/__init__.py:724: BiopythonParserWarning: negative starting position in feature location '0..225'; setting feature location to None. python3.14-snapgene-reader-0.1.23> warnings.warn( python3.14-snapgene-reader-0.1.23> python3.14-snapgene-reader-0.1.23> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html python3.14-snapgene-reader-0.1.23> ======================== 2 passed, 2 warnings in 0.16s ========================= python3.14-snapgene-reader-0.1.23> Finished executing pytestCheckPhase python3.14-snapgene-reader-0.1.23> Running phase: pytestcachePhase python3.14-snapgene-reader-0.1.23> Running phase: pytestRemoveBytecodePhase post-build step Route build to niks3: ok Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org time=2026-09-05T21:13:50.509+09:00 level=INFO msg="Uploading 11 paths to niks3.sjanglab.org (29 already cached)" time=2026-09-05T21:13:50.509+09:00 level=INFO msg="Uploading bvlf6xx0rxkxcz7swhdnss8bl27zb5b4-python3.14-html2text-2025.4.15 (267.7KB)" time=2026-09-05T21:13:50.509+09:00 level=INFO msg="Uploading fp8i9hl3ga3q594v02qbckx963fjlssd-lapack-3 (66.3MB)" time=2026-09-05T21:13:50.509+09:00 level=INFO msg="Uploading 3623cskgzpcncdfwicgaqvw5ci5hk5x0-python3.14-snapgene-reader-0.1.23 (55.2KB)" time=2026-09-05T21:13:50.509+09:00 level=INFO msg="Uploading fyr8w33dvdfvinjgs60a4x338i6dcrs7-python3.14-xmltodict-1.0.4 (95.9KB)" time=2026-09-05T21:13:50.509+09:00 level=INFO msg="Uploading 47cv8gslxwz2i759ln4swcvgzz5vy100-python3.14-biopython-1.86 (23.6MB)" time=2026-09-05T21:13:50.509+09:00 level=INFO msg="Uploading wv19y5w0mw7zcaxdgq7f1nibym3yh4p3-blas-3 (66.3MB)" time=2026-09-05T21:13:50.510+09:00 level=INFO msg="Uploading vcvxaln829rnf5kjali5vk6j4x4ariv2-python3.14-numpy-2.5.1 (51.2MB)" time=2026-09-05T21:13:50.510+09:00 level=INFO msg="Uploading 8wvps5ja1icnmz5mya1clgl17zv2bisa-gfortran-15.3.0-lib (13.3MB)" time=2026-09-05T21:13:50.509+09:00 level=INFO msg="Uploading zdg69p2yq3m4c79rvvh3jvsbq6srnqz3-lapack-3-dev (1.6MB)" time=2026-09-05T21:13:50.511+09:00 level=INFO msg="Uploading 73swycxiiq0w9iffydir3kb3dxsaiwkp-blas-3-dev (37.4KB)" time=2026-09-05T21:13:50.510+09:00 level=INFO msg="Uploading jk2209460ab5a2w1kqq2sja2lmq7rn8g-openblas-0.3.33 (32.6MB)" time=2026-09-05T21:13:54.375+09:00 level=INFO msg="Uploading 13 narinfos" time=2026-09-05T21:13:55.140+09:00 level=INFO msg="Upload complete. (5.085s)"