these 2 derivations will be built: /nix/store/p4xly8ixkdq5ajg6a97sffg5rfway3xg-source.drv /nix/store/hpidsb1i6z50q9j25b823ky5d2sa623w-psipred-4.0-unstable-2025-07-03.drv these 2 paths will be fetched (33.2 MiB download, 131.2 MiB unpacked): /nix/store/116c510qankr8vnvjplbp9ng6i6kni36-blast-2.17.0 /nix/store/9i7w3vhb140dy6bc0zlcp7ah5xzixq62-tcsh-6.24.16 building '/nix/store/hsb1x032lrwfyd3nwqpr4rpz9sal0ryd-source.drv' source> structuredAttrs is enabled source> source> trying https://github.com/psipred/psipred/archive/4e8d136076bc0af1534cac053cb54d1ee641571a.tar.gz source> % Total % Received % Xferd Average Speed Time Time Time Current source> Dload Upload Total Spent Left Speed source> source> 0 0 0 0 0 0 0 0 0 source> 0 0 0 0 0 0 0 0 0 source> 0 0 0 0 0 0 0 0 0 source> source> 0 0 0 0 0 0 0 0 0 source> 100 144.0k 0 144.0k 0 0 101.4k 0 00:01 135.6k source> 100 8.34M 0 8.34M 0 0 3.43M 0 00:02 4.02M source> 100 14.17M 0 14.17M 0 0 4.14M 0 00:03 4.02M source> 100 14.17M 0 14.17M 0 0 4.14M 0 00:03 4.02M source> 100 14.17M 0 14.17M 0 0 4.14M 0 00:03 4.02M source> unpacking source archive /build/download.tar.gz building '/nix/store/hpidsb1i6z50q9j25b823ky5d2sa623w-psipred-4.0-unstable-2025-07-03.drv' psipred-4.0-unstable-2025-07-03> Running phase: unpackPhase psipred-4.0-unstable-2025-07-03> unpacking source archive /nix/store/9lzp710lsma8p3mxkygxbzvm3598vpvb-source psipred-4.0-unstable-2025-07-03> source root is source psipred-4.0-unstable-2025-07-03> Running phase: patchPhase psipred-4.0-unstable-2025-07-03> Running phase: updateAutotoolsGnuConfigScriptsPhase psipred-4.0-unstable-2025-07-03> Running phase: configurePhase psipred-4.0-unstable-2025-07-03> no configure script, doing nothing psipred-4.0-unstable-2025-07-03> Running phase: buildPhase psipred-4.0-unstable-2025-07-03> make: Entering directory '/build/source/src' psipred-4.0-unstable-2025-07-03> gcc -O -std=gnu89 sspred_avpred.c -lm -o psipred psipred-4.0-unstable-2025-07-03> sspred_avpred.c: In function 'load_wts': psipred-4.0-unstable-2025-07-03> sspred_avpred.c:124:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 124 | fscanf(ifp, "%lf", &t); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> sspred_avpred.c:131:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 131 | fscanf(ifp, "%lf", &t); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> sspred_avpred.c:138:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 138 | fscanf(ifp, "%lf", &t); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> sspred_avpred.c:144:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 144 | fscanf(ifp, "%lf", &t); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> gcc -O -std=gnu89 sspred_hmulti.c -lm -o psipass2 psipred-4.0-unstable-2025-07-03> sspred_hmulti.c: In function 'load_wts': psipred-4.0-unstable-2025-07-03> sspred_hmulti.c:90:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 90 | fscanf(ifp, "%lf", &t); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> sspred_hmulti.c:98:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 98 | fscanf(ifp, "%lf", &t); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> sspred_hmulti.c:105:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 105 | fscanf(ifp, "%lf", &t); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> gcc -O -std=gnu89 chkparse.c -lm -o chkparse psipred-4.0-unstable-2025-07-03> gcc -O -std=gnu89 seq2mtx.c -lm -o seq2mtx psipred-4.0-unstable-2025-07-03> seq2mtx.c: In function 'getseq': psipred-4.0-unstable-2025-07-03> seq2mtx.c:130:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 130 | fgets(buf, MAXSEQLEN, lfil); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> seq2mtx.c:131:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 131 | fgets(buf, MAXSEQLEN, lfil); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> seq2mtx.c:137:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 137 | fgets(buf, MAXSEQLEN, lfil); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> seq2mtx.c:141:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 141 | fgets(buf, MAXSEQLEN, lfil); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> seq2mtx.c:143:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 143 | fgets(buf, MAXSEQLEN, lfil); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> seq2mtx.c:148:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] psipred-4.0-unstable-2025-07-03> 148 | fgets(buf, MAXSEQLEN, lfil); psipred-4.0-unstable-2025-07-03> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ psipred-4.0-unstable-2025-07-03> make: Leaving directory '/build/source/src' psipred-4.0-unstable-2025-07-03> Running phase: installPhase psipred-4.0-unstable-2025-07-03> Running phase: fixupPhase psipred-4.0-unstable-2025-07-03> shrinking RPATHs of ELF executables and libraries in /nix/store/b9iby3lyjr7rnvnssxvnjrqx89pf9513-psipred-4.0-unstable-2025-07-03 psipred-4.0-unstable-2025-07-03> shrinking /nix/store/b9iby3lyjr7rnvnssxvnjrqx89pf9513-psipred-4.0-unstable-2025-07-03/bin/psipred psipred-4.0-unstable-2025-07-03> shrinking /nix/store/b9iby3lyjr7rnvnssxvnjrqx89pf9513-psipred-4.0-unstable-2025-07-03/bin/psipass2 psipred-4.0-unstable-2025-07-03> shrinking /nix/store/b9iby3lyjr7rnvnssxvnjrqx89pf9513-psipred-4.0-unstable-2025-07-03/bin/chkparse psipred-4.0-unstable-2025-07-03> shrinking /nix/store/b9iby3lyjr7rnvnssxvnjrqx89pf9513-psipred-4.0-unstable-2025-07-03/bin/seq2mtx psipred-4.0-unstable-2025-07-03> checking for references to /build/ in /nix/store/b9iby3lyjr7rnvnssxvnjrqx89pf9513-psipred-4.0-unstable-2025-07-03... psipred-4.0-unstable-2025-07-03> patching script interpreter paths in /nix/store/b9iby3lyjr7rnvnssxvnjrqx89pf9513-psipred-4.0-unstable-2025-07-03 psipred-4.0-unstable-2025-07-03> stripping (with command strip and flags -S -p) in /nix/store/b9iby3lyjr7rnvnssxvnjrqx89pf9513-psipred-4.0-unstable-2025-07-03/libexec /nix/store/b9iby3lyjr7rnvnssxvnjrqx89pf9513-psipred-4.0-unstable-2025-07-03/bin psipred-4.0-unstable-2025-07-03> Running phase: installCheckPhase psipred-4.0-unstable-2025-07-03> Generating mtx file from sequence query.fasta ... psipred-4.0-unstable-2025-07-03> Predicting secondary structure based on single sequence ... psipred-4.0-unstable-2025-07-03> Pass1 ... psipred-4.0-unstable-2025-07-03> Pass2 ... psipred-4.0-unstable-2025-07-03> Cleaning up ... psipred-4.0-unstable-2025-07-03> Final output files: query.ss2 query.horiz psipred-4.0-unstable-2025-07-03> Finished. psipred-4.0-unstable-2025-07-03> install check OK: 149 lines in query.ss2 post-build step Route build to niks3: ok Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org time=2026-09-05T21:14:01.773+09:00 level=INFO msg="Uploading 3 paths to niks3.sjanglab.org (30 already cached)" time=2026-09-05T21:14:01.773+09:00 level=INFO msg="Uploading 9i7w3vhb140dy6bc0zlcp7ah5xzixq62-tcsh-6.24.16 (1.1MB)" time=2026-09-05T21:14:01.773+09:00 level=INFO msg="Uploading b9iby3lyjr7rnvnssxvnjrqx89pf9513-psipred-4.0-unstable-2025-07-03 (35.2MB)" time=2026-09-05T21:14:01.774+09:00 level=INFO msg="Uploading 116c510qankr8vnvjplbp9ng6i6kni36-blast-2.17.0 (130.1MB)" time=2026-09-05T21:14:07.164+09:00 level=INFO msg="Uploading 3 narinfos" time=2026-09-05T21:14:07.998+09:00 level=INFO msg="Upload complete. (6.607s)"