foldseek-10-941cd33
checks.x86_64-linux.pkgs-foldseek
· build #63
· raw
1Using checkPhaseThreadLimitHook
unpackPhase
2unpacking source archive /nix/store/1g2298s2bz7py868im4h43k0v913xzgd-source3source root is sourcepatchPhase
4patching script interpreter paths in lib/mmseqs/cmake/xxdi.pl5lib/mmseqs/cmake/xxdi.pl: interpreter directive changed from "#!/usr/bin/env perl" to "/nix/store/kfqbfq23lafkrbhxxblzf65baqz5p1ia-perl-5.42.3/bin/perl"6patching script interpreter paths in cmake/xxdi.pl7find: 'cmake/xxdi.pl': No such file or directoryconfigurePhase
8cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/share/doc/foldseek -DCMAKE_INSTALL_INFODIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/share/man -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/include -DCMAKE_INSTALL_SBINDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/lib -DCMAKE_STRIP=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/strip -DCMAKE_RANLIB=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/ranlib -DCMAKE_AR=/nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/ar -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_INSTALL_PREFIX=/nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 -DHAVE_AVX2=19-- The C compiler identification is GNU 15.3.010-- The CXX compiler identification is GNU 15.3.011-- Detecting C compiler ABI info12-- Detecting C compiler ABI info - done13-- Check for working C compiler: /nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/gcc - skipped14-- Detecting C compile features15-- Detecting C compile features - done16-- Detecting CXX compiler ABI info17-- Detecting CXX compiler ABI info - done18-- Check for working CXX compiler: /nix/store/w88q44gqd1qg5wmkk7v0h97rpiqvam0l-gcc-wrapper-15.3.0/bin/g++ - skipped19-- Detecting CXX compile features20-- Detecting CXX compile features - done21CMake Deprecation Warning at lib/mmseqs/CMakeLists.txt:1 (cmake_minimum_required):22 Compatibility with CMake < 3.10 will be removed from a future version of23 CMake.2425 Update the VERSION argument <min> value. Or, use the <min>...<max> syntax26 to tell CMake that the project requires at least <min> but has been updated27 to work with policies introduced by <max> or earlier.282930-- Source Directory: /build/source/lib/mmseqs31-- Project Directory: /build/source/lib/mmseqs32-- Compiler is GNU 33-- ZSTD VERSION 1.3.834CMake Deprecation Warning at lib/mmseqs/lib/tinyexpr/CMakeLists.txt:1 (cmake_minimum_required):35 Compatibility with CMake < 3.10 will be removed from a future version of36 CMake.3738 Update the VERSION argument <min> value. Or, use the <min>...<max> syntax39 to tell CMake that the project requires at least <min> but has been updated40 to work with policies introduced by <max> or earlier.414243-- xxd not found, using xxdi.pl instead44-- ShellCheck disabled45-- Performing Test HAVE_POSIX_FADVISE46-- Performing Test HAVE_POSIX_FADVISE - Success47-- Performing Test HAVE_POSIX_MADVISE48-- Performing Test HAVE_POSIX_MADVISE - Success49-- Performing Test ATOMIC_NATIVE50-- Performing Test ATOMIC_NATIVE - Failed51-- Performing Test ATOMIC_WITH_LIB52-- Performing Test ATOMIC_WITH_LIB - Success53-- Found Atomic: -latomic54-- IPS4O sorting works55-- Found ZLIB56-- Performing Test HAVE_ZLIB_CHECK57-- Performing Test HAVE_ZLIB_CHECK - Success58-- ZLIB works59-- Found BZLIB60-- Performing Test HAVE_BZLIB_CHECK61-- Performing Test HAVE_BZLIB_CHECK - Success62-- BZLIB works63-- Found OpenMP64CMake Deprecation Warning at lib/foldcomp/CMakeLists.txt:2 (cmake_minimum_required):65 Compatibility with CMake < 3.10 will be removed from a future version of66 CMake.6768 Update the VERSION argument <min> value. Or, use the <min>...<max> syntax69 to tell CMake that the project requires at least <min> but has been updated70 to work with policies introduced by <max> or earlier.717273-- xxd not found, using xxdi.pl instead74-- ShellCheck not found75-- Rust Target: x86_64-unknown-linux-gnu76-- Determining required link libraries for target x86_64-unknown-linux-gnu77-- Required static libs for target x86_64-unknown-linux-gnu: gcc_s;util;rt;pthread;m;dl;c78-- Found Rust: /nix/store/yaa1sq5g4jar7rvlspy7kk2wd98nj6qh-rustc-wrapper-1.97.1/bin/rustc (found version "1.97.1")79-- Using Corrosion as a subdirectory80-- Rust Feature: simd_avx281-- Could NOT find Git (missing: GIT_EXECUTABLE) 82CMake Warning at lib/prostt5/cmake/build-info.cmake:14 (message):83 Git not found. Build info will not be accurate.84Call Stack (most recent call first):85 lib/prostt5/CMakeLists.txt:82 (include)868788-- Performing Test CMAKE_HAVE_LIBC_PTHREAD89-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success90-- Found Threads: TRUE91-- Warning: ccache not found - consider installing it for faster compilation or disable this warning with GGML_CCACHE=OFF92-- CMAKE_SYSTEM_PROCESSOR: x86_6493-- Including CPU backend94-- x86 detected95-- Adding CPU backend variant ggml-cpu: -msse2;-msse3;-mssse3;-msse4.1;-mf16c;-mfma;-mavx;-mavx2 GGML_SSE41;GGML_F16C;GGML_FMA;GGML_AVX;GGML_AVX296-- Configuring done (3.7s)97-- Generating done (0.3s)98CMake Warning:99 Manually-specified variables were not used by the project:100101 BUILD_TESTING102 CMAKE_EXPORT_NO_PACKAGE_REGISTRY103104105-- Build files have been written to: /build/source/build106cmake: enabled parallel building107cmake: enabled parallel installingbuildPhase
108build flags: -j48 SHELL=/nix/store/9ipfvwnqp1q8ijnmi5sxvlx9r8w34lw3-bash-5.3p15/bin/bash109[ 0%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o110[ 0%] Built target cargo-prebuild_block_aligner_c111[ 1%] Building C object lib/mmseqs/lib/microtar/CMakeFiles/microtar.dir/microtar.c.o112[ 1%] Building C object lib/mmseqs/lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o113[ 1%] Building CXX object lib/mmseqs/lib/tantan/CMakeFiles/tantan.dir/tantan.cpp.o114[ 2%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o115[ 2%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/fse_decompress.c.o116[ 2%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/entropy_common.c.o117[ 2%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o118[ 2%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/zstd_common.c.o119[ 3%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o120[ 3%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o121[ 3%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o122[ 4%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/threading.c.o123[ 4%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o124[ 4%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/pool.c.o125[ 5%] Building CXX object lib/mmseqs/lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o126[ 6%] Linking CXX static library libversion.a127[ 6%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/hist.c.o128[ 6%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o129[ 6%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/error_private.c.o130[ 7%] Generating ../generated/VTML80.out.h131[ 8%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/common/xxhash.c.o132[ 8%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o133[ 8%] Generating ../generated/VTML40.out.h134[ 9%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o135[ 10%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/amino_acid.cpp.o136[ 10%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/database_reader.cpp.o137[ 10%] Generating ../generated/easystructuresearch.sh.h138[ 10%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/discretizer.cpp.o139[ 10%] Generating ../generated/structurecluster.sh.h140[ 10%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/atom_coordinate.cpp.o141[ 11%] Generating ../generated/blosum62.out.h142[ 11%] Generating ../generated/nucleotide.out.h143[ 10%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/fse_compress.c.o144[ 11%] Generating ../generated/structureindex.sh.h145[ 11%] Generating ../generated/structuresearch.sh.h146[ 11%] Generating ../generated/PAM30.out.h147[ 12%] Generating ../generated/structureiterativesearch.sh.h148[ 12%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h149[ 12%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o150[ 13%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/huf_compress.c.o151[ 13%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/foldcomp.cpp.o152[ 13%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml.c.o153[ 13%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/sidechain.cpp.o154[ 13%] Generating ../generated/structurerbh.sh.h155[ 13%] Generating ../generated/structdatabases.sh.h156[ 13%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/nerf.cpp.o157[ 14%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-alloc.c.o158[ 14%] Built target version159[ 15%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_compress.c.o160[ 15%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-backend.cpp.o161[ 15%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h162[ 15%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h163[ 15%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/torsion_angle.cpp.o164[ 16%] Generating ../generated/mat3di.out.h165[ 16%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstdmt_compress.c.o166[ 17%] Generating ../generated/encoder_weights_3di.kerasify.h167[ 16%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o168[ 17%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-opt.cpp.o169[ 17%] Generating ../generated/Library255_may17.lib.h170[ 17%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_fast.c.o171[ 17%] Generating ../generated/evalue_nn.kerasify.h172[ 17%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_double_fast.c.o173[ 17%] Generating ../generated/main.js.h174[ 17%] Generating ../generated/vendor.js.zst.h175[ 17%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o176[ 17%] Generating ../generated/libPolished_8.lib.h177[ 18%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_lazy.c.o178[ 19%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o179[ 19%] Generating ../generated/makepaddeddb.sh.h180[ 20%] Generating ../generated/result2structprofile.sh.h181[ 20%] Generating ../generated/cs219.lib.h182 Compiling block_aligner_c v0.4.0 (/build/source/lib/block-aligner/c)183[ 21%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-threading.cpp.o184[ 21%] Generating ../generated/krona_prelude.html.h185[ 21%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_opt.c.o186[ 22%] Generating ../generated/createstructsubdb.sh.h187[ 22%] Generating ../generated/result_viz_prelude.html.zst.h188[ 22%] Generating ../generated/multimersearch.sh.h189/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base':190/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]191 373 | ret->bound = s->bound;192 | ^~193In function 'new_expr',194 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:372:19:195/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'196 88 | te_expr *ret = malloc(size);197 | ^~~~~~~~~~~~198In function 'new_expr',199 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19:200/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]201 93 | ret->type = type;202 | ~~~~~~~~~~^~~~~~203/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'204 88 | te_expr *ret = malloc(size);205 | ^~~~~~~~~~~~206/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base':207/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]208 367 | ret->value = s->value;209 | ^~210In function 'new_expr',211 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19:212/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'213 88 | te_expr *ret = malloc(size);214 | ^~~~~~~~~~~~215/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function 'base':216/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=]217 446 | ret->value = NAN;218 | ^~219In function 'new_expr',220 inlined from 'base' at /build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:444:19:221/build/source/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'222 88 | te_expr *ret = malloc(size);223 | ^~~~~~~~~~~~224[ 22%] Generating ../generated/easymultimersearch.sh.h225[ 22%] Generating ../generated/multimercluster.sh.h226[ 23%] Generating ../generated/K4000.crf.h227[ 23%] Linking C static library libmicrotar.a228[ 23%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o229[ 23%] Generating ../generated/easymultimercluster.sh.h230[ 23%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-base.dir/ggml-quants.c.o231[ 23%] Built target microtar232[ 23%] Generating ../generated/easysearch.sh.h233[ 23%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/compress/zstd_ldm.c.o234[ 24%] Building CXX object lib/foldcomp/CMakeFiles/foldcomp.dir/src/utility.cpp.o235[ 25%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/huf_decompress.c.o236[ 25%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o237[ 25%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress.c.o238[ 26%] Generating ../generated/easycluster.sh.h239[ 26%] Generating ../generated/easytaxonomy.sh.h240[ 26%] Generating ../generated/easyrbh.sh.h241[ 26%] Generating ../generated/blastp.sh.h242warning: `extern` declarations without an explicit ABI are deprecated243 --> ../src/ffi.rs:32:12244 |24532 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix {246 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`247 |248 = note: `#[warn(missing_abi)]` on by default249250warning: `extern` declarations without an explicit ABI are deprecated251 --> ../src/ffi.rs:39:12252 |25339 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) {254 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`255256warning: `extern` declarations without an explicit ABI are deprecated257 --> ../src/ffi.rs:46:12258 |25946 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) {260 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`261262warning: `extern` declarations without an explicit ABI are deprecated263 --> ../src/ffi.rs:61:12264 |26561 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile {266 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`267268warning: `extern` declarations without an explicit ABI are deprecated269 --> ../src/ffi.rs:68:12270 |27168 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize {272 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`273274warning: `extern` declarations without an explicit ABI are deprecated275 --> ../src/ffi.rs:76:12276 |27776 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) {278 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`279280warning: `extern` declarations without an explicit ABI are deprecated281 --> ../src/ffi.rs:86:12282 |28386 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) {284 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`285286warning: `extern` declarations without an explicit ABI are deprecated287 --> ../src/ffi.rs:97:12288 |28997 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {290 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`291292warning: `extern` declarations without an explicit ABI are deprecated293 --> ../src/ffi.rs:108:12294 |295108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {296 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`297298warning: `extern` declarations without an explicit ABI are deprecated299 --> ../src/ffi.rs:119:12300 |301119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {302 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`303304warning: `extern` declarations without an explicit ABI are deprecated305 --> ../src/ffi.rs:126:12306 |307126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 {308 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`309310warning: `extern` declarations without an explicit ABI are deprecated311 --> ../src/ffi.rs:133:12312 |313133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 {314 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`315316warning: `extern` declarations without an explicit ABI are deprecated317 --> ../src/ffi.rs:140:12318 |319140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) {320 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`321322warning: `extern` declarations without an explicit ABI are deprecated323 --> ../src/ffi.rs:149:12324 |325149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar {326 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`327328warning: `extern` declarations without an explicit ABI are deprecated329 --> ../src/ffi.rs:156:12330 |331156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen {332 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`333334warning: `extern` declarations without an explicit ABI are deprecated335 --> ../src/ffi.rs:163:12336 |337163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize {338 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`339340warning: `extern` declarations without an explicit ABI are deprecated341 --> ../src/ffi.rs:170:12342 |343170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) {344 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`345346warning: `extern` declarations without an explicit ABI are deprecated347 --> ../src/ffi.rs:179:12348 |349179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes {350 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`351352warning: `extern` declarations without an explicit ABI are deprecated353 --> ../src/ffi.rs:186:12354 |355186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) {356 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`357358warning: `extern` declarations without an explicit ABI are deprecated359 --> ../src/ffi.rs:194:12360 |361194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) {362 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`363364warning: `extern` declarations without an explicit ABI are deprecated365 --> ../src/ffi.rs:203:12366 |367203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias {368 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`369370warning: `extern` declarations without an explicit ABI are deprecated371 --> ../src/ffi.rs:210:12372 |373210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) {374 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`375376warning: `extern` declarations without an explicit ABI are deprecated377 --> ../src/ffi.rs:218:12378 |379218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) {380 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`381382warning: `extern` declarations without an explicit ABI are deprecated383 --> ../src/ffi.rs:237:20384 |385237 | pub unsafe extern fn $new_name(query_len: usize,386 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`387...388315 | / gen_functions!(389316 | | block_new_aa,390317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",391318 | | block_align_aa,392... |393332 | | AAMatrix, AAProfile, false, false394333 | | );395 | |_- in this macro invocation396 |397 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)398399warning: `extern` declarations without an explicit ABI are deprecated400 --> ../src/ffi.rs:246:20401 |402246 | pub unsafe extern fn $align_name(b: BlockHandle,403 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`404...405315 | / gen_functions!(406316 | | block_new_aa,407317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",408318 | | block_align_aa,409... |410332 | | AAMatrix, AAProfile, false, false411333 | | );412 | |_- in this macro invocation413 |414 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)415416warning: `extern` declarations without an explicit ABI are deprecated417 --> ../src/ffi.rs:259:20418 |419259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,420 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`421...422315 | / gen_functions!(423316 | | block_new_aa,424317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",425318 | | block_align_aa,426... |427332 | | AAMatrix, AAProfile, false, false428333 | | );429 | |_- in this macro invocation430 |431 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)432433warning: `extern` declarations without an explicit ABI are deprecated434 --> ../src/ffi.rs:270:20435 |436270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,437 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`438...439315 | / gen_functions!(440316 | | block_new_aa,441317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",442318 | | block_align_aa,443... |444332 | | AAMatrix, AAProfile, false, false445333 | | );446 | |_- in this macro invocation447 |448 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)449450warning: `extern` declarations without an explicit ABI are deprecated451 --> ../src/ffi.rs:288:20452 |453288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {454 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`455...456315 | / gen_functions!(457316 | | block_new_aa,458317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",459318 | | block_align_aa,460... |461332 | | AAMatrix, AAProfile, false, false462333 | | );463 | |_- in this macro invocation464 |465 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)466467warning: `extern` declarations without an explicit ABI are deprecated468 --> ../src/ffi.rs:295:20469 |470295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {471 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`472...473315 | / gen_functions!(474316 | | block_new_aa,475317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",476318 | | block_align_aa,477... |478332 | | AAMatrix, AAProfile, false, false479333 | | );480 | |_- in this macro invocation481 |482 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)483484warning: `extern` declarations without an explicit ABI are deprecated485 --> ../src/ffi.rs:302:20486 |487302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...488 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`489...490315 | / gen_functions!(491316 | | block_new_aa,492317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",493318 | | block_align_aa,494... |495332 | | AAMatrix, AAProfile, false, false496333 | | );497 | |_- in this macro invocation498 |499 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)500501warning: `extern` declarations without an explicit ABI are deprecated502 --> ../src/ffi.rs:309:20503 |504309 | pub unsafe extern fn $free_name(b: BlockHandle) {505 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`506...507315 | / gen_functions!(508316 | | block_new_aa,509317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",510318 | | block_align_aa,511... |512332 | | AAMatrix, AAProfile, false, false513333 | | );514 | |_- in this macro invocation515 |516 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)517518warning: `extern` declarations without an explicit ABI are deprecated519 --> ../src/ffi.rs:237:20520 |521237 | pub unsafe extern fn $new_name(query_len: usize,522 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`523...524335 | / gen_functions!(525336 | | block_new_aa_xdrop,526337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",527338 | | block_align_aa_xdrop,528... |529352 | | AAMatrix, AAProfile, false, true530353 | | );531 | |_- in this macro invocation532 |533 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)534535warning: `extern` declarations without an explicit ABI are deprecated536 --> ../src/ffi.rs:246:20537 |538246 | pub unsafe extern fn $align_name(b: BlockHandle,539 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`540...541335 | / gen_functions!(542336 | | block_new_aa_xdrop,543337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",544338 | | block_align_aa_xdrop,545... |546352 | | AAMatrix, AAProfile, false, true547353 | | );548 | |_- in this macro invocation549 |550 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)551552warning: `extern` declarations without an explicit ABI are deprecated553 --> ../src/ffi.rs:259:20554 |555259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,556 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`557...558335 | / gen_functions!(559336 | | block_new_aa_xdrop,560337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",561338 | | block_align_aa_xdrop,562... |563352 | | AAMatrix, AAProfile, false, true564353 | | );565 | |_- in this macro invocation566 |567 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)568569warning: `extern` declarations without an explicit ABI are deprecated570 --> ../src/ffi.rs:270:20571 |572270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,573 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`574...575335 | / gen_functions!(576336 | | block_new_aa_xdrop,577337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",578338 | | block_align_aa_xdrop,579... |580352 | | AAMatrix, AAProfile, false, true581353 | | );582 | |_- in this macro invocation583 |584 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)585586warning: `extern` declarations without an explicit ABI are deprecated587 --> ../src/ffi.rs:288:20588 |589288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {590 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`591...592335 | / gen_functions!(593336 | | block_new_aa_xdrop,594337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",595338 | | block_align_aa_xdrop,596... |597352 | | AAMatrix, AAProfile, false, true598353 | | );599 | |_- in this macro invocation600 |601 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)602603warning: `extern` declarations without an explicit ABI are deprecated604 --> ../src/ffi.rs:295:20605 |606295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {607 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`608...609335 | / gen_functions!(610336 | | block_new_aa_xdrop,611337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",612338 | | block_align_aa_xdrop,613... |614352 | | AAMatrix, AAProfile, false, true615353 | | );616 | |_- in this macro invocation617 |618 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)619620warning: `extern` declarations without an explicit ABI are deprecated621 --> ../src/ffi.rs:302:20622 |623302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...624 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`625...626335 | / gen_functions!(627336 | | block_new_aa_xdrop,628337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",629338 | | block_align_aa_xdrop,630... |631352 | | AAMatrix, AAProfile, false, true632353 | | );633 | |_- in this macro invocation634 |635 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)636637warning: `extern` declarations without an explicit ABI are deprecated638 --> ../src/ffi.rs:309:20639 |640309 | pub unsafe extern fn $free_name(b: BlockHandle) {641 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`642...643335 | / gen_functions!(644336 | | block_new_aa_xdrop,645337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",646338 | | block_align_aa_xdrop,647... |648352 | | AAMatrix, AAProfile, false, true649353 | | );650 | |_- in this macro invocation651 |652 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)653654warning: `extern` declarations without an explicit ABI are deprecated655 --> ../src/ffi.rs:237:20656 |657237 | pub unsafe extern fn $new_name(query_len: usize,658 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`659...660355 | / gen_functions!(661356 | | block_new_aa_trace,662357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",663358 | | block_align_aa_trace,664... |665372 | | AAMatrix, AAProfile, true, false666373 | | );667 | |_- in this macro invocation668 |669 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)670671[ 26%] Generating ../generated/blastpgp.sh.h672warning: `extern` declarations without an explicit ABI are deprecated673 --> ../src/ffi.rs:246:20674 |675246 | pub unsafe extern fn $align_name(b: BlockHandle,676 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`677...678355 | / gen_functions!(679356 | | block_new_aa_trace,680357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",681358 | | block_align_aa_trace,682... |683372 | | AAMatrix, AAProfile, true, false684373 | | );685 | |_- in this macro invocation686 |687 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)688689warning: `extern` declarations without an explicit ABI are deprecated690 --> ../src/ffi.rs:259:20691 |692259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,693 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`694...695355 | / gen_functions!(696356 | | block_new_aa_trace,697357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",698358 | | block_align_aa_trace,699... |700372 | | AAMatrix, AAProfile, true, false701373 | | );702 | |_- in this macro invocation703 |704 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)705706warning: `extern` declarations without an explicit ABI are deprecated707 --> ../src/ffi.rs:270:20708 |709270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,710 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`711...712355 | / gen_functions!(713356 | | block_new_aa_trace,714357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",715358 | | block_align_aa_trace,716... |717372 | | AAMatrix, AAProfile, true, false718373 | | );719 | |_- in this macro invocation720 |721 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)722723warning: `extern` declarations without an explicit ABI are deprecated724 --> ../src/ffi.rs:288:20725 |726288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {727 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`728...729355 | / gen_functions!(730356 | | block_new_aa_trace,731357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",732358 | | block_align_aa_trace,733... |734372 | | AAMatrix, AAProfile, true, false735373 | | );736 | |_- in this macro invocation737 |738 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)739740warning: `extern` declarations without an explicit ABI are deprecated741 --> ../src/ffi.rs:295:20742 |743295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {744 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`745...746355 | / gen_functions!(747356 | | block_new_aa_trace,748357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",749358 | | block_align_aa_trace,750... |751372 | | AAMatrix, AAProfile, true, false752373 | | );753 | |_- in this macro invocation754 |755 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)756757warning: `extern` declarations without an explicit ABI are deprecated758 --> ../src/ffi.rs:302:20759 |760302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...761 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`762...763355 | / gen_functions!(764356 | | block_new_aa_trace,765357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",766358 | | block_align_aa_trace,767... |768372 | | AAMatrix, AAProfile, true, false769373 | | );770 | |_- in this macro invocation771 |772 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)773774warning: `extern` declarations without an explicit ABI are deprecated775 --> ../src/ffi.rs:309:20776 |777309 | pub unsafe extern fn $free_name(b: BlockHandle) {778 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`779...780355 | / gen_functions!(781356 | | block_new_aa_trace,782357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",783358 | | block_align_aa_trace,784... |785372 | | AAMatrix, AAProfile, true, false786373 | | );787 | |_- in this macro invocation788 |789 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)790791warning: `extern` declarations without an explicit ABI are deprecated792 --> ../src/ffi.rs:237:20793 |794237 | pub unsafe extern fn $new_name(query_len: usize,795 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`796...797375 | / gen_functions!(798376 | | block_new_aa_trace_xdrop,799377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",800378 | | block_align_aa_trace_xdrop,801... |802392 | | AAMatrix, AAProfile, true, true803393 | | );804 | |_- in this macro invocation805 |806 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)807808warning: `extern` declarations without an explicit ABI are deprecated809 --> ../src/ffi.rs:246:20810 |811246 | pub unsafe extern fn $align_name(b: BlockHandle,812 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`813...814375 | / gen_functions!(815376 | | block_new_aa_trace_xdrop,816377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",817378 | | block_align_aa_trace_xdrop,818... |819392 | | AAMatrix, AAProfile, true, true820393 | | );821 | |_- in this macro invocation822 |823 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)824825warning: `extern` declarations without an explicit ABI are deprecated826 --> ../src/ffi.rs:259:20827 |828259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,829 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`830...831375 | / gen_functions!(832376 | | block_new_aa_trace_xdrop,833377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",834378 | | block_align_aa_trace_xdrop,835... |836392 | | AAMatrix, AAProfile, true, true837393 | | );838 | |_- in this macro invocation839 |840 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)841842warning: `extern` declarations without an explicit ABI are deprecated843 --> ../src/ffi.rs:270:20844 |845270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,846 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`847...848375 | / gen_functions!(849376 | | block_new_aa_trace_xdrop,850377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",851378 | | block_align_aa_trace_xdrop,852... |853392 | | AAMatrix, AAProfile, true, true854393 | | );855 | |_- in this macro invocation856 |857 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)858859warning: `extern` declarations without an explicit ABI are deprecated860 --> ../src/ffi.rs:288:20861 |862288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {863 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`864...865375 | / gen_functions!(866376 | | block_new_aa_trace_xdrop,867377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",868378 | | block_align_aa_trace_xdrop,869... |870392 | | AAMatrix, AAProfile, true, true871393 | | );872 | |_- in this macro invocation873 |874 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)875876warning: `extern` declarations without an explicit ABI are deprecated877 --> ../src/ffi.rs:295:20878 |879295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {880 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`881...882375 | / gen_functions!(883376 | | block_new_aa_trace_xdrop,884377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",885378 | | block_align_aa_trace_xdrop,886... |887392 | | AAMatrix, AAProfile, true, true888393 | | );889 | |_- in this macro invocation890 |891 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)892893warning: `extern` declarations without an explicit ABI are deprecated894 --> ../src/ffi.rs:302:20895 |896302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...897 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`898...899375 | / gen_functions!(900376 | | block_new_aa_trace_xdrop,901377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",902378 | | block_align_aa_trace_xdrop,903... |904392 | | AAMatrix, AAProfile, true, true905393 | | );906 | |_- in this macro invocation907 |908 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)909910warning: `extern` declarations without an explicit ABI are deprecated911 --> ../src/ffi.rs:309:20912 |913309 | pub unsafe extern fn $free_name(b: BlockHandle) {914 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`915...916375 | / gen_functions!(917376 | | block_new_aa_trace_xdrop,918377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",919378 | | block_align_aa_trace_xdrop,920... |921392 | | AAMatrix, AAProfile, true, true922393 | | );923 | |_- in this macro invocation924 |925 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)926927[ 26%] Generating ../generated/map.sh.h928[ 27%] Generating ../generated/rbh.sh.h929[ 28%] Generating ../generated/linclust.sh.h930[ 28%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_decompress_block.c.o931[ 28%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/decompress/zstd_ddict.c.o932[ 29%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/cover.c.o933[ 29%] Generating ../generated/clustering.sh.h934[ 29%] Generating ../generated/cascaded_clustering.sh.h935[ 29%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/fastcover.c.o936[ 30%] Generating ../generated/update_clustering.sh.h937[ 30%] Generating ../generated/searchtargetprofile.sh.h938[ 31%] Generating ../generated/createindex.sh.h939[ 31%] Generating ../generated/createtaxdb.sh.h940[ 31%] Generating ../generated/translated_search.sh.h941[ 31%] Generating ../generated/taxpercontig.sh.h942[ 31%] Generating ../generated/multihitdb.sh.h943[ 31%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/divsufsort.c.o944[ 32%] Generating ../generated/multihitsearch.sh.h945[ 32%] Linking C static library libtinyexpr.a946[ 33%] Generating ../generated/enrich.sh.h947[ 33%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/dictBuilder/zdict.c.o948[ 33%] Generating ../generated/blastn.sh.h949[ 33%] Generating ../generated/searchslicedtargetprofile.sh.h950[ 34%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_common.c.o951[ 34%] Built target tinyexpr952[ 34%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_compress.c.o953[ 35%] Generating ../generated/taxonomy.sh.h954[ 35%] Building C object lib/mmseqs/lib/zstd/build/cmake/lib/CMakeFiles/libzstd_static.dir/__/__/__/lib/deprecated/zbuff_decompress.c.o955[ 35%] Generating ../generated/linsearch.sh.h956[ 35%] Generating ../generated/databases.sh.h957[ 35%] Generating ../generated/nucleotide_clustering.sh.h958[ 35%] Generating ../generated/iterativepp.sh.h959[ 35%] Generating ../generated/tsv2exprofiledb.sh.h960[ 35%] Built target local-generated961[ 35%] Built target ksw2962[ 36%] Linking CXX static library libtantan.a963[ 36%] Built target tantan964[ 36%] Built target alp965warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions)966 Finished `release` profile [optimized] target(s) in 4.49s967Copying byproducts `libblock_aligner_c.a` to /build/source/build968[ 36%] Built target _cargo-build_block_aligner_c969[ 36%] Built target cargo-build_block_aligner_c970[ 36%] Built target generated971[ 36%] Linking CXX static library libggml-base.a972[ 36%] Built target ggml-base973[ 37%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu.c.o974[ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu.cpp.o975[ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-aarch64.cpp.o976[ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/amx/amx.cpp.o977[ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-hbm.cpp.o978[ 37%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/amx/mmq.cpp.o979[ 37%] Building C object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-quants.c.o980[ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/ggml-cpu-traits.cpp.o981[ 38%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml-cpu.dir/ggml-cpu/llamafile/sgemm.cpp.o982[ 38%] Linking CXX static library libfoldcomp.a983[ 38%] Built target foldcomp984[ 38%] Building CXX object src/strucclustutils/CMakeFiles/gemmiwrapper.dir/GemmiWrapper.cpp.o985[ 38%] Linking C static library libzstd.a986[ 38%] Built target libzstd_static987[ 38%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o988[ 38%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o989[ 38%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o990[ 38%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o991[ 39%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o992[ 40%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o993[ 40%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o994[ 40%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o995[ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o996[ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o997[ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o998[ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o999[ 41%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o1000[ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o1001[ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o1002[ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o1003[ 42%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o1004[ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o1005[ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o1006[ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o1007[ 43%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o1008[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o1009[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o1010[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o1011[ 44%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o1012[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o1013[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o1014[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o1015[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o1016[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o1017[ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o1018[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o1019[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o1020[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o1021[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o1022[ 47%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o1023[ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o1024[ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o1025[ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o1026[ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o1027[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o1028[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o1029[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o1030[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o1031[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o1032[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o1033[ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o1034[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o1035[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o1036[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o1037[ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o1038[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o1039[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o1040[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o1041[ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o1042[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o1043[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o1044[ 53%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o1045[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o1046[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o1047[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o1048[ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o1049[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o1050[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o1051[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o1052[ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o1053[ 56%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o1054[ 56%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o1055[ 56%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o1056[ 56%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o1057[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o1058[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o1059[ 57%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o1060[ 58%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o1061[ 58%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o1062[ 58%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o1063[ 58%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o1064[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o1065[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o1066[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o1067[ 59%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o1068[ 60%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o1069[ 60%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o1070[ 60%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o1071[ 60%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o1072[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o1073[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o1074[ 61%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o1075[ 62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o1076[ 62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o1077[ 62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o1078[ 62%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o1079[ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o1080[ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o1081[ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o1082[ 63%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o1083[ 64%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o1084[ 65%] Linking CXX static library libggml-cpu.a1085[ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o1086[ 65%] Built target ggml-cpu1087[ 65%] Building CXX object lib/prostt5/ggml/src/CMakeFiles/ggml.dir/ggml-backend-reg.cpp.o1088[ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o1089[ 65%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o1090[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o1091[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o1092[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o1093[ 66%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o1094[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o1095[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o1096[ 67%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/gpuserver.cpp.o1097[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o1098/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp: In function 'std::wstring utf8_to_utf16(const std::string&)':1099/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:76:10: warning: 'template<class _Codecvt, class _Elem, class _Wide_alloc, class _Byte_alloc> class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations]1100 76 | std::wstring_convert<std::codecvt_utf8_utf16<wchar_t>> converter;1101 | ^~~~~~~~~~~~~~~1102In file included from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/locale:47,1103 from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/fs_path.h:36,1104 from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/filesystem:54,1105 from /build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:7:1106/nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here1107 262 | class _GLIBCXX17_DEPRECATED wstring_convert1108 | ^~~~~~~~~~~~~~~1109/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp: In function 'std::string utf16_to_utf8(const std::wstring&)':1110/build/source/lib/prostt5/ggml/src/ggml-backend-reg.cpp:81:10: warning: 'template<class _Codecvt, class _Elem, class _Wide_alloc, class _Byte_alloc> class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations]1111 81 | std::wstring_convert<std::codecvt_utf8_utf16<wchar_t>> converter;1112 | ^~~~~~~~~~~~~~~1113/nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here1114 262 | class _GLIBCXX17_DEPRECATED wstring_convert1115 | ^~~~~~~~~~~~~~~1116[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o1117[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o1118[ 68%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o1119[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o1120[ 69%] Linking CXX static library libggml.a1121[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o1122[ 69%] Built target ggml1123[ 69%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o1124[ 70%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama.cpp.o1125[ 70%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o1126[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o1127[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o1128[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o1129[ 71%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o1130[ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o1131[ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o1132[ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o1133[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o1134[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o1135[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o1136[ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o1137[ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o1138[ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o1139[ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o1140[ 74%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o1141[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o1142[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o1143[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o1144[ 75%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o1145[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o1146[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o1147[ 76%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o1148[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o1149[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o1150[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o1151[ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o1152[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o1153[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o1154[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o1155[ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o1156/build/source/lib/mmseqs/src/util/result2flat.cpp: In function 'int result2flat(int, const char**, const Command&)':1157/build/source/lib/mmseqs/src/util/result2flat.cpp:65:37: warning: ignoring return value of 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>; size_type = long unsigned int]', declared with attribute 'nodiscard' [-Wunused-result]1158 65 | dbKeyBuffer.size();1159 | ~~~~~~~~~~~~~~~~^~1160In file included from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/string:56,1161 from /build/source/lib/mmseqs/src/commons/Parameters.h:7,1162 from /build/source/lib/mmseqs/src/util/result2flat.cpp:2:1163/nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/basic_string.h:1163:7: note: declared here1164 1163 | size() const _GLIBCXX_NOEXCEPT1165 | ^~~~1166[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o1167[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o1168[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o1169[ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o1170[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o1171[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o1172[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o1173[ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o1174[ 81%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o1175[ 81%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o1176[ 81%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o1177[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o1178[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o1179[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o1180[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o1181[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o1182[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o1183[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o1184[ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o1185[ 84%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o1186[ 84%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o1187[ 84%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o1188[ 84%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o1189[ 85%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o1190[ 85%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o1191[ 85%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o1192[ 86%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o1193[ 86%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o1194[ 86%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-vocab.cpp.o1195[ 86%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-grammar.cpp.o1196[ 87%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/llama-sampling.cpp.o1197[ 87%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/unicode.cpp.o1198[ 87%] Building CXX object lib/prostt5/src/CMakeFiles/llama.dir/unicode-data.cpp.o1199/build/source/lib/prostt5/src/unicode.cpp: In function 'std::wstring unicode_wstring_from_utf8(const std::string&)':1200/build/source/lib/prostt5/src/unicode.cpp:210:10: warning: 'template<class _Codecvt, class _Elem, class _Wide_alloc, class _Byte_alloc> class std::__cxx11::wstring_convert' is deprecated [-Wdeprecated-declarations]1201 210 | std::wstring_convert<std::codecvt_utf8<wchar_t>> conv;1202 | ^~~~~~~~~~~~~~~1203In file included from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/locale:47,1204 from /nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/regex:43,1205 from /build/source/lib/prostt5/src/unicode.cpp:13:1206/nix/store/4yxdxw3kppr2pbic95p4mri520rkdag2-gcc-15.3.0/include/c++/15.3.0/bits/locale_conv.h:262:33: note: declared here1207 262 | class _GLIBCXX17_DEPRECATED wstring_convert1208 | ^~~~~~~~~~~~~~~1209[ 88%] Linking CXX static library libgemmiwrapper.a1210[ 88%] Built target gemmiwrapper1211[ 88%] Linking CXX static library libllama.a1212[ 88%] Built target llama1213[ 88%] Building CXX object src/CMakeFiles/prostt5.dir/strucclustutils/ProstT5.cpp.o1214[ 89%] Linking CXX static library libprostt5.a1215[ 89%] Built target prostt51216[ 89%] Linking CXX static library libmmseqs-framework.a1217[ 89%] Built target mmseqs-framework1218[ 89%] Building CXX object lib/kerasify/CMakeFiles/kerasify.dir/keras_model.cpp.o1219[ 90%] Building CXX object lib/tmalign/CMakeFiles/tmalign.dir/affineneedlemanwunsch.cpp.o1220[ 90%] Building CXX object lib/pulchra/CMakeFiles/pulchra.dir/pulchra.cpp.o1221[ 90%] Building CXX object lib/3di/CMakeFiles/3di.dir/structureto3di.cpp.o1222[ 90%] Building CXX object lib/tmalign/CMakeFiles/tmalign.dir/TMalign.cpp.o1223[ 90%] Building CXX object lib/3di/CMakeFiles/3di.dir/structureto3diseqdist.cpp.o1224[ 90%] Linking CXX static library libpulchra.a1225[ 90%] Built target pulchra1226[ 90%] Linking CXX static library lib3di.a1227[ 90%] Built target 3di1228[ 90%] Linking CXX static library libkerasify.a1229[ 90%] Built target kerasify1230[ 90%] Linking CXX static library libtmalign.a1231[ 90%] Built target tmalign1232[ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/aln2tmscore.cpp.o1233[ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/commons/LocalParameters.cpp.o1234[ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/commons/LDDT.cpp.o1235[ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/structureconvertalis.cpp.o1236[ 91%] Building CXX object src/CMakeFiles/foldseek-framework.dir/commons/TMaligner.cpp.o1237[ 93%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/EvalueNeuralNet.cpp.o1238[ 93%] Building CXX object src/CMakeFiles/foldseek-framework.dir/commons/StructureSmithWaterman.cpp.o1239[ 93%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/tmalign.cpp.o1240[ 93%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/samplemulambda.cpp.o1241[ 93%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/structcreatedb.cpp.o1242[ 94%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/structurealign.cpp.o1243[ 94%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/structureto3didescriptor.cpp.o1244[ 94%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/PulchraWrapper.cpp.o1245[ 94%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/structurerescorediagonal.cpp.o1246[ 94%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/convert2pdb.cpp.o1247[ 95%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/compressca.cpp.o1248[ 95%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/filtermultimer.cpp.o1249[ 95%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/createmultimerreport.cpp.o1250[ 96%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/expandmultimer.cpp.o1251[ 96%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/makepaddeddb.cpp.o1252[ 96%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/result2structprofile.cpp.o1253[ 96%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/scoremultimer.cpp.o1254[ 97%] Building CXX object src/CMakeFiles/foldseek-framework.dir/strucclustutils/createstructsubdb.cpp.o1255[ 97%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/StructureCluster.cpp.o1256[ 97%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/StructureSearch.cpp.o1257[ 97%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/StructureIndex.cpp.o1258[ 97%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/EasyStructureRbh.cpp.o1259[ 98%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/StructureRbh.cpp.o1260[ 98%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/EasyStructureSearch.cpp.o1261[ 98%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/EasyStructureCluster.cpp.o1262[ 98%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/MultimerSearch.cpp.o1263[ 99%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/EasyMultimerSearch.cpp.o1264[ 99%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/MultimerCluster.cpp.o1265[ 99%] Building CXX object src/CMakeFiles/foldseek-framework.dir/workflow/EasyMultimerCluster.cpp.o1266[100%] Building CXX object src/CMakeFiles/foldseek-framework.dir/FoldseekBase.cpp.o1267[100%] Linking CXX static library libfoldseek-framework.a1268[100%] Built target foldseek-framework1269[100%] Building CXX object src/CMakeFiles/foldseek.dir/foldseek.cpp.o1270[100%] Linking CXX executable foldseek1271[100%] Built target foldseek1272buildPhase completed in 1 minutes 35 secondsinstallPhase
1273install flags: -j48 SHELL=/nix/store/9ipfvwnqp1q8ijnmi5sxvlx9r8w34lw3-bash-5.3p15/bin/bash install1274[ 1%] Built target microtar1275[ 1%] Built target cargo-prebuild_block_aligner_c1276[ 4%] Built target version1277[ 11%] Built target tinyexpr1278[ 13%] Built target generated1279[ 18%] Built target local-generated1280[ 19%] Built target ksw21281[ 20%] Built target tantan1282[ 22%] Built target ggml-base1283[ 26%] Built target foldcomp1284[ 32%] Built target libzstd_static1285[ 36%] Built target alp1286warning: `extern` declarations without an explicit ABI are deprecated1287 --> ../src/ffi.rs:32:121288 |128932 | pub unsafe extern fn block_new_simple_aamatrix(match_score: i8, mismatch_score: i8) -> *mut AAMatrix {1290 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1291 |1292 = note: `#[warn(missing_abi)]` on by default12931294warning: `extern` declarations without an explicit ABI are deprecated1295 --> ../src/ffi.rs:39:121296 |129739 | pub unsafe extern fn block_set_aamatrix(matrix: *mut AAMatrix, a: u8, b: u8, score: i8) {1298 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`12991300warning: `extern` declarations without an explicit ABI are deprecated1301 --> ../src/ffi.rs:46:121302 |130346 | pub unsafe extern fn block_free_aamatrix(matrix: *mut AAMatrix) {1304 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13051306warning: `extern` declarations without an explicit ABI are deprecated1307 --> ../src/ffi.rs:61:121308 |130961 | pub unsafe extern fn block_new_aaprofile(str_len: usize, block_size: usize, gap_extend: i8) -> *mut AAProfile {1310 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13111312warning: `extern` declarations without an explicit ABI are deprecated1313 --> ../src/ffi.rs:68:121314 |131568 | pub unsafe extern fn block_len_aaprofile(profile: *const AAProfile) -> usize {1316 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13171318warning: `extern` declarations without an explicit ABI are deprecated1319 --> ../src/ffi.rs:76:121320 |132176 | pub unsafe extern fn block_clear_aaprofile(profile: *mut AAProfile, str_len: usize) {1322 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13231324warning: `extern` declarations without an explicit ABI are deprecated1325 --> ../src/ffi.rs:86:121326 |132786 | pub unsafe extern fn block_set_aaprofile(profile: *mut AAProfile, i: usize, b: u8, score: i8) {1328 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13291330warning: `extern` declarations without an explicit ABI are deprecated1331 --> ../src/ffi.rs:97:121332 |133397 | pub unsafe extern fn block_set_gap_open_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {1334 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13351336warning: `extern` declarations without an explicit ABI are deprecated1337 --> ../src/ffi.rs:108:121338 |1339108 | pub unsafe extern fn block_set_gap_close_C_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {1340 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13411342warning: `extern` declarations without an explicit ABI are deprecated1343 --> ../src/ffi.rs:119:121344 |1345119 | pub unsafe extern fn block_set_gap_open_R_aaprofile(profile: *mut AAProfile, i: usize, gap: i8) {1346 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13471348warning: `extern` declarations without an explicit ABI are deprecated1349 --> ../src/ffi.rs:126:121350 |1351126 | pub unsafe extern fn block_get_aaprofile(profile: *const AAProfile, i: usize, b: u8) -> i8 {1352 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13531354warning: `extern` declarations without an explicit ABI are deprecated1355 --> ../src/ffi.rs:133:121356 |1357133 | pub unsafe extern fn block_get_gap_extend_aaprofile(profile: *const AAProfile) -> i8 {1358 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13591360warning: `extern` declarations without an explicit ABI are deprecated1361 --> ../src/ffi.rs:140:121362 |1363140 | pub unsafe extern fn block_free_aaprofile(profile: *mut AAProfile) {1364 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13651366warning: `extern` declarations without an explicit ABI are deprecated1367 --> ../src/ffi.rs:149:121368 |1369149 | pub unsafe extern fn block_new_cigar(query_len: usize, reference_len: usize) -> *mut Cigar {1370 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13711372warning: `extern` declarations without an explicit ABI are deprecated1373 --> ../src/ffi.rs:156:121374 |1375156 | pub unsafe extern fn block_get_cigar(cigar: *const Cigar, i: usize) -> OpLen {1376 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13771378warning: `extern` declarations without an explicit ABI are deprecated1379 --> ../src/ffi.rs:163:121380 |1381163 | pub unsafe extern fn block_len_cigar(cigar: *const Cigar) -> usize {1382 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13831384warning: `extern` declarations without an explicit ABI are deprecated1385 --> ../src/ffi.rs:170:121386 |1387170 | pub unsafe extern fn block_free_cigar(cigar: *mut Cigar) {1388 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13891390warning: `extern` declarations without an explicit ABI are deprecated1391 --> ../src/ffi.rs:179:121392 |1393179 | pub unsafe extern fn block_new_padded_aa(len: usize, max_size: usize) -> *mut PaddedBytes {1394 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`13951396warning: `extern` declarations without an explicit ABI are deprecated1397 --> ../src/ffi.rs:186:121398 |1399186 | pub unsafe extern fn block_set_bytes_padded_aa(padded: *mut PaddedBytes, s: *const u8, len: usize, max_size: usize) {1400 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14011402warning: `extern` declarations without an explicit ABI are deprecated1403 --> ../src/ffi.rs:194:121404 |1405194 | pub unsafe extern fn block_free_padded_aa(padded: *mut PaddedBytes) {1406 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14071408warning: `extern` declarations without an explicit ABI are deprecated1409 --> ../src/ffi.rs:203:121410 |1411203 | pub unsafe extern fn block_new_pos_bias(len: usize, max_size: usize) -> *mut PosBias {1412 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14131414warning: `extern` declarations without an explicit ABI are deprecated1415 --> ../src/ffi.rs:210:121416 |1417210 | pub unsafe extern fn block_set_pos_bias(bias: *mut PosBias, b: *const i16, len: usize) {1418 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14191420warning: `extern` declarations without an explicit ABI are deprecated1421 --> ../src/ffi.rs:218:121422 |1423218 | pub unsafe extern fn block_free_pos_bias(bias: *mut PosBias) {1424 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`14251426warning: `extern` declarations without an explicit ABI are deprecated1427 --> ../src/ffi.rs:237:201428 |1429237 | pub unsafe extern fn $new_name(query_len: usize,1430 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1431...1432315 | / gen_functions!(1433316 | | block_new_aa,1434317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1435318 | | block_align_aa,1436... |1437332 | | AAMatrix, AAProfile, false, false1438333 | | );1439 | |_- in this macro invocation1440 |1441 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)14421443warning: `extern` declarations without an explicit ABI are deprecated1444 --> ../src/ffi.rs:246:201445 |1446246 | pub unsafe extern fn $align_name(b: BlockHandle,1447 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1448...1449315 | / gen_functions!(1450316 | | block_new_aa,1451317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1452318 | | block_align_aa,1453... |1454332 | | AAMatrix, AAProfile, false, false1455333 | | );1456 | |_- in this macro invocation1457 |1458 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)14591460warning: `extern` declarations without an explicit ABI are deprecated1461 --> ../src/ffi.rs:259:201462 |1463259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1464 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1465...1466315 | / gen_functions!(1467316 | | block_new_aa,1468317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1469318 | | block_align_aa,1470... |1471332 | | AAMatrix, AAProfile, false, false1472333 | | );1473 | |_- in this macro invocation1474 |1475 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)14761477warning: `extern` declarations without an explicit ABI are deprecated1478 --> ../src/ffi.rs:270:201479 |1480270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1481 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1482...1483315 | / gen_functions!(1484316 | | block_new_aa,1485317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1486318 | | block_align_aa,1487... |1488332 | | AAMatrix, AAProfile, false, false1489333 | | );1490 | |_- in this macro invocation1491 |1492 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)14931494warning: `extern` declarations without an explicit ABI are deprecated1495 --> ../src/ffi.rs:288:201496 |1497288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1498 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1499...1500315 | / gen_functions!(1501316 | | block_new_aa,1502317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1503318 | | block_align_aa,1504... |1505332 | | AAMatrix, AAProfile, false, false1506333 | | );1507 | |_- in this macro invocation1508 |1509 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15101511warning: `extern` declarations without an explicit ABI are deprecated1512 --> ../src/ffi.rs:295:201513 |1514295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1515 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1516...1517315 | / gen_functions!(1518316 | | block_new_aa,1519317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1520318 | | block_align_aa,1521... |1522332 | | AAMatrix, AAProfile, false, false1523333 | | );1524 | |_- in this macro invocation1525 |1526 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15271528warning: `extern` declarations without an explicit ABI are deprecated1529 --> ../src/ffi.rs:302:201530 |1531302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1532 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1533...1534315 | / gen_functions!(1535316 | | block_new_aa,1536317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1537318 | | block_align_aa,1538... |1539332 | | AAMatrix, AAProfile, false, false1540333 | | );1541 | |_- in this macro invocation1542 |1543 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15441545warning: `extern` declarations without an explicit ABI are deprecated1546 --> ../src/ffi.rs:309:201547 |1548309 | pub unsafe extern fn $free_name(b: BlockHandle) {1549 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1550...1551315 | / gen_functions!(1552316 | | block_new_aa,1553317 | | "Create a new block aligner instance for global alignment of amino acid strings (no traceback).",1554318 | | block_align_aa,1555... |1556332 | | AAMatrix, AAProfile, false, false1557333 | | );1558 | |_- in this macro invocation1559 |1560 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15611562warning: `extern` declarations without an explicit ABI are deprecated1563 --> ../src/ffi.rs:237:201564 |1565237 | pub unsafe extern fn $new_name(query_len: usize,1566 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1567...1568335 | / gen_functions!(1569336 | | block_new_aa_xdrop,1570337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1571338 | | block_align_aa_xdrop,1572... |1573352 | | AAMatrix, AAProfile, false, true1574353 | | );1575 | |_- in this macro invocation1576 |1577 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15781579warning: `extern` declarations without an explicit ABI are deprecated1580 --> ../src/ffi.rs:246:201581 |1582246 | pub unsafe extern fn $align_name(b: BlockHandle,1583 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1584...1585335 | / gen_functions!(1586336 | | block_new_aa_xdrop,1587337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1588338 | | block_align_aa_xdrop,1589... |1590352 | | AAMatrix, AAProfile, false, true1591353 | | );1592 | |_- in this macro invocation1593 |1594 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)15951596warning: `extern` declarations without an explicit ABI are deprecated1597 --> ../src/ffi.rs:259:201598 |1599259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1600 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1601...1602335 | / gen_functions!(1603336 | | block_new_aa_xdrop,1604337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1605338 | | block_align_aa_xdrop,1606... |1607352 | | AAMatrix, AAProfile, false, true1608353 | | );1609 | |_- in this macro invocation1610 |1611 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16121613warning: `extern` declarations without an explicit ABI are deprecated1614 --> ../src/ffi.rs:270:201615 |1616270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1617 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1618...1619335 | / gen_functions!(1620336 | | block_new_aa_xdrop,1621337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1622338 | | block_align_aa_xdrop,1623... |1624352 | | AAMatrix, AAProfile, false, true1625353 | | );1626 | |_- in this macro invocation1627 |1628 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16291630warning: `extern` declarations without an explicit ABI are deprecated1631 --> ../src/ffi.rs:288:201632 |1633288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1634 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1635...1636335 | / gen_functions!(1637336 | | block_new_aa_xdrop,1638337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1639338 | | block_align_aa_xdrop,1640... |1641352 | | AAMatrix, AAProfile, false, true1642353 | | );1643 | |_- in this macro invocation1644 |1645 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16461647warning: `extern` declarations without an explicit ABI are deprecated1648 --> ../src/ffi.rs:295:201649 |1650295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1651 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1652...1653335 | / gen_functions!(1654336 | | block_new_aa_xdrop,1655337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1656338 | | block_align_aa_xdrop,1657... |1658352 | | AAMatrix, AAProfile, false, true1659353 | | );1660 | |_- in this macro invocation1661 |1662 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16631664warning: `extern` declarations without an explicit ABI are deprecated1665 --> ../src/ffi.rs:302:201666 |1667302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1668 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1669...1670335 | / gen_functions!(1671336 | | block_new_aa_xdrop,1672337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1673338 | | block_align_aa_xdrop,1674... |1675352 | | AAMatrix, AAProfile, false, true1676353 | | );1677 | |_- in this macro invocation1678 |1679 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16801681warning: `extern` declarations without an explicit ABI are deprecated1682 --> ../src/ffi.rs:309:201683 |1684309 | pub unsafe extern fn $free_name(b: BlockHandle) {1685 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1686...1687335 | / gen_functions!(1688336 | | block_new_aa_xdrop,1689337 | | "Create a new block aligner instance for X-drop alignment of amino acid strings (no traceback).",1690338 | | block_align_aa_xdrop,1691... |1692352 | | AAMatrix, AAProfile, false, true1693353 | | );1694 | |_- in this macro invocation1695 |1696 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)16971698warning: `extern` declarations without an explicit ABI are deprecated1699 --> ../src/ffi.rs:237:201700 |1701237 | pub unsafe extern fn $new_name(query_len: usize,1702 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1703...1704355 | / gen_functions!(1705356 | | block_new_aa_trace,1706357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1707358 | | block_align_aa_trace,1708... |1709372 | | AAMatrix, AAProfile, true, false1710373 | | );1711 | |_- in this macro invocation1712 |1713 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17141715warning: `extern` declarations without an explicit ABI are deprecated1716 --> ../src/ffi.rs:246:201717 |1718246 | pub unsafe extern fn $align_name(b: BlockHandle,1719 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1720...1721355 | / gen_functions!(1722356 | | block_new_aa_trace,1723357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1724358 | | block_align_aa_trace,1725... |1726372 | | AAMatrix, AAProfile, true, false1727373 | | );1728 | |_- in this macro invocation1729 |1730 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17311732warning: `extern` declarations without an explicit ABI are deprecated1733 --> ../src/ffi.rs:259:201734 |1735259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1736 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1737...1738355 | / gen_functions!(1739356 | | block_new_aa_trace,1740357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1741358 | | block_align_aa_trace,1742... |1743372 | | AAMatrix, AAProfile, true, false1744373 | | );1745 | |_- in this macro invocation1746 |1747 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17481749warning: `extern` declarations without an explicit ABI are deprecated1750 --> ../src/ffi.rs:270:201751 |1752270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1753 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1754...1755355 | / gen_functions!(1756356 | | block_new_aa_trace,1757357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1758358 | | block_align_aa_trace,1759... |1760372 | | AAMatrix, AAProfile, true, false1761373 | | );1762 | |_- in this macro invocation1763 |1764 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17651766warning: `extern` declarations without an explicit ABI are deprecated1767 --> ../src/ffi.rs:288:201768 |1769288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1770 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1771...1772355 | / gen_functions!(1773356 | | block_new_aa_trace,1774357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1775358 | | block_align_aa_trace,1776... |1777372 | | AAMatrix, AAProfile, true, false1778373 | | );1779 | |_- in this macro invocation1780 |1781 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17821783warning: `extern` declarations without an explicit ABI are deprecated1784 --> ../src/ffi.rs:295:201785 |1786295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1787 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1788...1789355 | / gen_functions!(1790356 | | block_new_aa_trace,1791357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1792358 | | block_align_aa_trace,1793... |1794372 | | AAMatrix, AAProfile, true, false1795373 | | );1796 | |_- in this macro invocation1797 |1798 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)17991800warning: `extern` declarations without an explicit ABI are deprecated1801 --> ../src/ffi.rs:302:201802 |1803302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1804 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1805...1806355 | / gen_functions!(1807356 | | block_new_aa_trace,1808357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1809358 | | block_align_aa_trace,1810... |1811372 | | AAMatrix, AAProfile, true, false1812373 | | );1813 | |_- in this macro invocation1814 |1815 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18161817warning: `extern` declarations without an explicit ABI are deprecated1818 --> ../src/ffi.rs:309:201819 |1820309 | pub unsafe extern fn $free_name(b: BlockHandle) {1821 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1822...1823355 | / gen_functions!(1824356 | | block_new_aa_trace,1825357 | | "Create a new block aligner instance for global alignment of amino acid strings, with traceback.",1826358 | | block_align_aa_trace,1827... |1828372 | | AAMatrix, AAProfile, true, false1829373 | | );1830 | |_- in this macro invocation1831 |1832 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18331834warning: `extern` declarations without an explicit ABI are deprecated1835 --> ../src/ffi.rs:237:201836 |1837237 | pub unsafe extern fn $new_name(query_len: usize,1838 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1839...1840375 | / gen_functions!(1841376 | | block_new_aa_trace_xdrop,1842377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1843378 | | block_align_aa_trace_xdrop,1844... |1845392 | | AAMatrix, AAProfile, true, true1846393 | | );1847 | |_- in this macro invocation1848 |1849 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18501851warning: `extern` declarations without an explicit ABI are deprecated1852 --> ../src/ffi.rs:246:201853 |1854246 | pub unsafe extern fn $align_name(b: BlockHandle,1855 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1856...1857375 | / gen_functions!(1858376 | | block_new_aa_trace_xdrop,1859377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1860378 | | block_align_aa_trace_xdrop,1861... |1862392 | | AAMatrix, AAProfile, true, true1863393 | | );1864 | |_- in this macro invocation1865 |1866 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18671868warning: `extern` declarations without an explicit ABI are deprecated1869 --> ../src/ffi.rs:259:201870 |1871259 | pub unsafe extern fn $align_profile_name(b: BlockHandle,1872 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1873...1874375 | / gen_functions!(1875376 | | block_new_aa_trace_xdrop,1876377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1877378 | | block_align_aa_trace_xdrop,1878... |1879392 | | AAMatrix, AAProfile, true, true1880393 | | );1881 | |_- in this macro invocation1882 |1883 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)18841885warning: `extern` declarations without an explicit ABI are deprecated1886 --> ../src/ffi.rs:270:201887 |1888270 | pub unsafe extern fn $align_3di_name(b: BlockHandle,1889 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1890...1891375 | / gen_functions!(1892376 | | block_new_aa_trace_xdrop,1893377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1894378 | | block_align_aa_trace_xdrop,1895... |1896392 | | AAMatrix, AAProfile, true, true1897393 | | );1898 | |_- in this macro invocation1899 |1900 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19011902warning: `extern` declarations without an explicit ABI are deprecated1903 --> ../src/ffi.rs:288:201904 |1905288 | pub unsafe extern fn $res_name(b: BlockHandle) -> AlignResult {1906 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1907...1908375 | / gen_functions!(1909376 | | block_new_aa_trace_xdrop,1910377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1911378 | | block_align_aa_trace_xdrop,1912... |1913392 | | AAMatrix, AAProfile, true, true1914393 | | );1915 | |_- in this macro invocation1916 |1917 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19181919warning: `extern` declarations without an explicit ABI are deprecated1920 --> ../src/ffi.rs:295:201921 |1922295 | pub unsafe extern fn $trace_name(b: BlockHandle, query_idx: usize, reference_idx: usize, cigar: *mut Cigar) {1923 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1924...1925375 | / gen_functions!(1926376 | | block_new_aa_trace_xdrop,1927377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1928378 | | block_align_aa_trace_xdrop,1929... |1930392 | | AAMatrix, AAProfile, true, true1931393 | | );1932 | |_- in this macro invocation1933 |1934 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19351936warning: `extern` declarations without an explicit ABI are deprecated1937 --> ../src/ffi.rs:302:201938 |1939302 | pub unsafe extern fn $trace_eq_name(b: BlockHandle, q: *const PaddedBytes, r: *const PaddedBytes, query_idx: usize, refer...1940 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1941...1942375 | / gen_functions!(1943376 | | block_new_aa_trace_xdrop,1944377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1945378 | | block_align_aa_trace_xdrop,1946... |1947392 | | AAMatrix, AAProfile, true, true1948393 | | );1949 | |_- in this macro invocation1950 |1951 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19521953warning: `extern` declarations without an explicit ABI are deprecated1954 --> ../src/ffi.rs:309:201955 |1956309 | pub unsafe extern fn $free_name(b: BlockHandle) {1957 | ^^^^^^ help: explicitly specify the "C" ABI: `extern "C"`1958...1959375 | / gen_functions!(1960376 | | block_new_aa_trace_xdrop,1961377 | | "Create a new block aligner instance for X-drop alignment of amino acid strings, with traceback.",1962378 | | block_align_aa_trace_xdrop,1963... |1964392 | | AAMatrix, AAProfile, true, true1965393 | | );1966 | |_- in this macro invocation1967 |1968 = note: this warning originates in the macro `gen_functions` (in Nightly builds, run with -Z macro-backtrace for more info)19691970warning: `block_aligner_c` (lib) generated 55 warnings (run `cargo fix --lib -p block_aligner_c` to apply 55 suggestions)1971 Finished `release` profile [optimized] target(s) in 0.00s1972[ 37%] Built target gemmiwrapper1973[ 40%] Built target ggml-cpu1974Copying byproducts `libblock_aligner_c.a` to /build/source/build1975[ 40%] Built target ggml1976[ 40%] Built target _cargo-build_block_aligner_c1977[ 40%] Built target cargo-build_block_aligner_c1978[ 42%] Built target llama1979[ 43%] Built target prostt51980[ 89%] Built target mmseqs-framework1981[ 89%] Built target pulchra1982[ 89%] Built target 3di1983[ 89%] Built target kerasify1984[ 90%] Built target tmalign1985[100%] Built target foldseek-framework1986[100%] Built target foldseek1987Install the project...1988-- Install configuration: "Release"1989-- Installing: /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/bin/foldseekfixupPhase
1990shrinking RPATHs of ELF executables and libraries in /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd331991shrinking /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/bin/foldseek1992checking for references to /build/ in /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33...1993patching script interpreter paths in /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd331994stripping (with command strip and flags -S -p) in /nix/store/rkyk3lpdwm1py7xmn4g4chx3n3hksga4-foldseek-10-941cd33/bin