folddisco-2-9375a2d
checks.x86_64-linux.pkgs-folddisco
· build #63
· raw
unpackPhase
1unpacking source archive /nix/store/r2vsfkh8z5m24dg1dgyrmqjwvka53rgc-source2source root is source3Executing cargoSetupPostUnpackHook4Finished cargoSetupPostUnpackHookpatchPhase
5Executing cargoSetupPostPatchHook6Validating consistency between /build/source/Cargo.lock and /build/folddisco-2-9375a2d-vendor/Cargo.lock7Finished cargoSetupPostPatchHookbuildPhase
8Executing cargoBuildHook9cargoBuildHook flags: -j 48 --target x86_64-unknown-linux-gnu --offline --profile release10 Compiling proc-macro2 v1.0.10111 Compiling glob v0.3.312 Compiling quote v1.0.4113 Compiling unicode-ident v1.0.1914 Compiling serde_core v1.0.22815 Compiling crossbeam-utils v0.8.2116 Compiling libc v0.2.17717 Compiling rustix v0.38.4418 Compiling serde v1.0.22819 Compiling prettyplease v0.2.3720 Compiling cfg-if v1.0.321 Compiling either v1.15.022 Compiling memchr v2.7.623 Compiling regex-syntax v0.8.624 Compiling linux-raw-sys v0.4.1525 Compiling minimal-lexical v0.2.126 Compiling bitflags v2.9.427 Compiling shlex v1.3.028 Compiling bindgen v0.69.529 Compiling equivalent v1.0.230 Compiling hashbrown v0.16.031 Compiling find-msvc-tools v0.1.432 Compiling home v0.5.1133 Compiling rayon-core v1.13.034 Compiling rustc-hash v1.1.035 Compiling crc32fast v1.5.036 Compiling lazycell v1.3.037 Compiling log v0.4.2838 Compiling lazy_static v1.5.039 Compiling parking_lot_core v0.9.1240 Compiling smallvec v1.15.141 Compiling adler2 v2.0.142 Compiling simd-adler32 v0.3.743 Compiling winnow v0.7.1344 Compiling toml_write v0.1.245 Compiling scopeguard v1.2.046 Compiling hashbrown v0.14.547 Compiling fixedbitset v0.4.248 Compiling once_cell v1.21.349 Compiling rustc-hash v2.1.150 Compiling byteorder v1.5.051 Compiling pdbtbx-cif v0.12.0 (/build/source/lib/pdbtbx-cif)52 Compiling pico-args v0.5.0 (/build/source/lib/pico-args)53 Compiling lock_api v0.4.1454 Compiling libloading v0.8.955 Compiling miniz_oxide v0.8.956 Compiling cc v1.2.4157 Compiling clang-sys v1.8.158 Compiling itertools v0.12.159 Compiling nom v7.1.360 Compiling cmake v0.1.5461 Compiling flate2 v1.1.462 Compiling crossbeam-epoch v0.9.1863 Compiling aho-corasick v1.1.364 Compiling indexmap v2.11.465 Compiling crossbeam-deque v0.8.666 Compiling syn v2.0.10667 Compiling regex-automata v0.4.1168 Compiling memmap2 v0.9.869 Compiling which v4.4.270 Compiling rayon v1.11.071 Compiling petgraph v0.6.572 Compiling cexpr v0.6.073 Compiling toml_datetime v0.6.1174 Compiling serde_spanned v0.6.975 Compiling toml_edit v0.22.2776 Compiling regex v1.11.377 Compiling dashmap v6.1.078 Compiling toml v0.8.2379 Compiling folddisco v2.0.0 (/build/source)80 Finished `release` profile [optimized] target(s) in 57.53s81Executing cargoInstallPostBuildHook82Finished cargoInstallPostBuildHook83Finished cargoBuildHook84buildPhase completed in 58 secondscheckPhase
85Executing cargoCheckHook86cargoCheckHook flags: -j 48 --profile release --target x86_64-unknown-linux-gnu --offline --87 Compiling folddisco v2.0.0 (/build/source)88 Finished `release` profile [optimized] target(s) in 9.97s89 Running unittests src/lib.rs (target/x86_64-unknown-linux-gnu/release/deps/folddisco-9be7752cc40c00ac)9091running 103 tests92test cli::workflows::benchmark::tests::test_benchmark ... ignored93test cli::workflows::build_index::tests::test_build_index ... ignored94test cli::workflows::build_index::tests::test_build_index_of_foldcomp_db ... ignored95test cli::workflows::query_pdb::tests::test_query_pdb_with_file ... ignored96test cli::workflows::query_pdb::tests::test_query_pdb_workflow ... ignored97test cli::workflows::query_pdb::tests::test_query_with_foldcompdb ... ignored98test controller::graph::tests::test_graph ... ok99test controller::mode::tests::test_id_type ... ok100test controller::query::tests::test_add_shifted_hashes ... ok101test controller::io::tests::test_usize_vector_io ... ok102test controller::query::tests::test_parse_query_string ... ok103test controller::query::tests::test_parse_query_string_with_aa_substitution ... ok104test controller::query::tests::test_parse_query_string_with_range ... ok105test cli::config::tests::test_write_index_config_to_file ... ok106test controller::query::tests::test_parse_query_string_with_space ... ok107test controller::query::tests::test_parse_query_string_with_space_and_no_chain ... ok108test controller::sort::tests::test_default_order ... ok109test controller::mode::tests::test_parse_path_by_id_type ... ok110test controller::sort::tests::test_sort_order_from_str ... ok111test controller::sort::tests::test_strategy_with_dummy_data ... ok112test controller::sort::tests::test_printing_strategies ... ok113test controller::sort::tests::test_strategy_from_str ... ok114test controller::sort::tests::test_structure_default_order ... ok115test controller::sort::tests::test_structure_sort_key_from_str ... ok116test controller::sort::tests::test_sort_key_from_str ... ok117test controller::sort::tests::test_structure_strategy_from_str ... ok118test controller::sort::tests::test_structure_strategy_with_dummy_data ... ok119test controller::query::tests::test_make_query_map ... ok120test geometry::folddisco_angle::tests::test_geometrichash_works ... ok121test geometry::folddisco_dist::tests::test_geometrichash_works ... ok122test geometry::pdb_motif::tests::test_hash_works ... ok123test geometry::pdb_motif::tests::test_default_hash_works ... ok124test geometry::hybrid::tests::test_geometrichash_works ... ok125test geometry::pdb_motif_sincos::tests::test_geometrichash_works ... ok126test geometry::pdb_tr::tests::test_deduplication_correctness ... ok127test geometry::core::tests::test_hash_type ... ok128test geometry::ppf::tests::test_multiple_bins ... ok129test geometry::ppf::tests::test_hashvalue ... ok130test geometry::tertiary_interaction::tests::test_geometrichash_works ... ok131test geometry::trrosetta::tests::test_default_hash_works ... ok132test geometry::trrosetta::tests::test_multiple_bins ... ok133test geometry::pdb_tr::tests::test_geometrichash_works ... ok134test structure::coordinate::coordinate_tests::test_approx_cb ... ok135test structure::coordinate::coordinate_tests::test_calc_torsion_angle ... ok136test structure::coordinate::coordinate_tests::test_calc_torsion_angle_vec ... ok137test structure::io::cif::tests::test_get_one_char_numeric_multi_digit ... ok138test structure::io::cif::tests::test_get_three_char_array_numeric ... ok139test structure::core::structure_tests::test_gly_integration ... ok140test structure::io::cif::tests::test_get_four_char_array_numeric ... ok141test structure::io::cif::tests::test_get_one_char_numeric ... ok142test structure::core::structure_tests::test_avg_bfactor ... ok143test structure::io::fcz::bindgen_test_layout___mbstate_t ... ok144test structure::io::fcz::bindgen_test_layout___va_list_tag ... ok145test structure::io::fcz::bindgen_test_layout__opaque_pthread_attr_t ... ok146test structure::io::fcz::bindgen_test_layout___darwin_pthread_handler_rec ... ok147test structure::io::fcz::bindgen_test_layout__opaque_pthread_condattr_t ... ok148test structure::io::fcz::bindgen_test_layout__opaque_pthread_mutex_t ... ok149test structure::io::fcz::bindgen_test_layout__opaque_pthread_mutexattr_t ... ok150test structure::io::fcz::bindgen_test_layout__opaque_pthread_cond_t ... ok151test structure::io::fcz::bindgen_test_layout__opaque_pthread_rwlock_t ... ok152test structure::io::fcz::bindgen_test_layout__opaque_pthread_once_t ... ok153test structure::io::fcz::bindgen_test_layout__opaque_pthread_rwlockattr_t ... ok154test structure::io::fcz::bindgen_test_layout_atom_t ... ok155test structure::io::fcz::bindgen_test_layout__opaque_pthread_t ... ok156test structure::io::parser::parser_tests::test_parse_line_fail_serial ... ok157test index::lookup::tests::test_save_and_load_lookup ... ok158test structure::io::parser::parser_tests::test_parse_line_float ... ok159test structure::io::parser::parser_tests::test_parse_line_success ... ok160test structure::io::parser::parser_tests::test_parse_residue ... ok161test controller::retrieve::tests::test_retrieval_wrapper ... ok162test structure::io::parser::parser_tests::test_parse_atom_fail ... ok163test controller::io::tests::test_offset_map_io ... ok164test structure::io::parser::parser_tests::test_parse_residue_fail ... ok165test structure::kabsch::tests::test_identical_structures ... ok166test structure::io::pdb::tests::test_read_pdb ... ok167test structure::io::parser::parser_tests::test_parse_atom ... ok168test structure::lms_qcp::tests::lms_qcp_excludes_outlier ... ignored169test structure::kabsch::tests::test_kabsch_superimposer ... ok170test structure::metrics::tests::test_metrics_calculate_all_with_identical ... ok171test structure::io::pdb::tests::test_read_pdb_gz ... ok172test structure::io::pdb::tests::test_get_min_max_coords ... ok173test structure::qcp::tests::test_qcp_superimposer ... ok174test utils::combination::tests::test_long_combination_iterator ... ok175test utils::convert::tests::test_map_aa_to_u8 ... ok176test utils::formatter::tests::test_tsv_formatter ... ok177test utils::log::tests::test_colored_log ... ok178test utils::loader::tests::test_load_path ... ok179test utils::combination::tests::test_combination_iterator ... ok180test structure::io::pdb::tests::test_loading_works ... ok181test structure::metrics::tests::test_with_real_coordinates ... ok182test structure::metrics::tests::test_with_outlier_coordinates ... ok183test structure::metrics::tests::test_with_long_coordinates ... ok184test structure::io::fcz::tests::test_foldcomp ... ok185test structure::io::cif::tests::test_read_cif_from_pdb_gz ... ok186test index::indextable::tests::test_folddisco_index ... ok187test structure::io::fcz::tests::test_foldcomp_db_reader ... ok188test structure::io::cif::tests::test_read_cif_from_pdb ... ok189test controller::feature::tests::test_get_geometric_hash_with_shifts ... ok190test geometry::pdb_tr::tests::test_feature_distribution_analysis ... ok191test structure::io::cif::tests::test_read_cif_from_afdb_gz ... ok192test structure::io::cif::tests::test_read_cif_from_afdb ... ok193test geometry::pdb_tr::tests::test_deduplication_inline_performance ... ok194test geometry::pdb_tr::tests::test_max_32_shifts_efficiency ... ok195196test result: ok. 96 passed; 0 failed; 7 ignored; 0 measured; 0 filtered out; finished in 0.09s197198 Running unittests src/cli/main.rs (target/x86_64-unknown-linux-gnu/release/deps/folddisco-6df0256fcc285d72)199200running 0 tests201202test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s203204 Running tests/mod.rs (target/x86_64-unknown-linux-gnu/release/deps/mod-b3ad7280fd62946d)205206running 0 tests207208test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s209210 Doc-tests folddisco211212running 0 tests213214test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s215216Finished cargoCheckHookinstallPhase
217Executing cargoInstallHook218Finished cargoInstallHookfixupPhase
219shrinking RPATHs of ELF executables and libraries in /nix/store/q2v58wix42vkq50fd7cnvdv2qvxfrh7w-folddisco-2-9375a2d220shrinking /nix/store/q2v58wix42vkq50fd7cnvdv2qvxfrh7w-folddisco-2-9375a2d/bin/folddisco221checking for references to /build/ in /nix/store/q2v58wix42vkq50fd7cnvdv2qvxfrh7w-folddisco-2-9375a2d...222patching script interpreter paths in /nix/store/q2v58wix42vkq50fd7cnvdv2qvxfrh7w-folddisco-2-9375a2d223stripping (with command strip and flags -S -p) in /nix/store/q2v58wix42vkq50fd7cnvdv2qvxfrh7w-folddisco-2-9375a2d/bin