this derivation will be built:
  /nix/store/plg1a4gmn11173s99pani3wwrk0hiq70-python3.14-primer3-py-2.3.0.drv
these 31 paths will be fetched (1.3 MiB download, 7.5 MiB unpacked):
  /nix/store/fk7pndl7698yclcscgh4n9k6d9p756qr-die-hook
  /nix/store/n270y4a1az60ib3mhfiwyvmbs8jc0vjw-ensure-newer-sources-hook
  /nix/store/ya1hlzhbj7yp9zw08s1wnh7r0w8j8qcr-make-shell-wrapper-hook
  /nix/store/n642r7qrsldf792clkb3s7cn2ckvx4qw-pypa-build-hook.sh
  /nix/store/4wlznh578q7r4vry0z35p0cp8mmlw05m-pypa-install-hook
  /nix/store/ap5y17n5m4gkrgh1h9dbb8k45d63an6k-pytest-check-hook
  /nix/store/s2a0fvmvlpqc79zyxk66jrkr26s5vqc6-python-catch-conflicts-hook
  /nix/store/c22p17b6y8phdk02nca7py1vjmlwinw5-python-imports-check-hook.sh
  /nix/store/1wlfynmb00zpgmmr44g3734ivwpah48x-python-metadata-check-hook.sh
  /nix/store/bxf211dncwm8ixy8bwr6v3phjgfkm32k-python-namespaces-hook.sh
  /nix/store/mqgjim0ymcidgiamzsyl3f0zp85wr52a-python-output-dist-hook
  /nix/store/wf5p4pgzbbxpp2avh183ykpk2m4rzh9n-python-remove-bin-bytecode-hook
  /nix/store/n6mdfmyg3yi8mq5ywzwy3kxfwnzl6475-python-remove-tests-dir-hook
  /nix/store/kgma60gps7zc1scln5ccj9049hxf2z3m-python-runtime-deps-check-hook.sh
  /nix/store/9c0f047kd87s16lyvbdxg4145hwk7dkk-python3-3.14.6-env
  /nix/store/zr4aiw507623fhan9804fxxv5bwasay6-python3.14-autocommand-2.2.2
  /nix/store/b0jycclcphq52fd935cqw62b962hpndk-python3.14-build-1.5.1
  /nix/store/z0q5nd903fmaw8kdvbxnv5k6d602l90i-python3.14-distutils-83.0.0
  /nix/store/6vsqn588r8lffghj5m31s9g0a2c0ifcc-python3.14-inflect-7.5.0
  /nix/store/yjybff7894aa0s73s3zxa87prrk667b9-python3.14-installer-1.0.1
  /nix/store/8y0hwkzcx5jakl873sgm97f4czv8095g-python3.14-jaraco-classes-3.4.0
  /nix/store/yhpszl91qjxd300qhnnjxva9b65p3zpz-python3.14-jaraco-collections-5.2.1
  /nix/store/mvkqr6i6wxaia7xnz6079i1fs5vckqsj-python3.14-jaraco-context-6.1.0
  /nix/store/6grg5dvmb19ycqqa3f1vnvhkyc7dd6z5-python3.14-jaraco-functools-4.4.0
  /nix/store/2awm3rwj8lpkvj1p187zh5qndrg6hmwk-python3.14-jaraco-text-4.0.0
  /nix/store/48bxvp3w55y4l1vkj8qvxykmvg2vklhq-python3.14-more-itertools-11.1.0
  /nix/store/zqsnrcfic77hc6v3hzycb7bl6qfp0fwv-python3.14-pyproject-hooks-1.2.0
  /nix/store/757iswlh1ndz27azcj60r7rjf30ni5as-python3.14-typeguard-4.5.2
  /nix/store/sa2qvd26yrbsk2z8mm9a77l1f1szhln2-python3.14-wheel-0.47.0
  /nix/store/i68fp24ajy3argnlxp2vjdas2bn3wv2x-source
  /nix/store/wj0zw4yvjcdr960ghbhv4jf2ham8l9bk-wrap-python-hook
building '/nix/store/plg1a4gmn11173s99pani3wwrk0hiq70-python3.14-primer3-py-2.3.0.drv'
python3.14-primer3-py-2.3.0> Sourcing python-remove-tests-dir-hook
python3.14-primer3-py-2.3.0> Sourcing python-catch-conflicts-hook.sh
python3.14-primer3-py-2.3.0> Sourcing python-remove-bin-bytecode-hook.sh
python3.14-primer3-py-2.3.0> Sourcing pypa-build-hook
python3.14-primer3-py-2.3.0> Using pypaBuildPhase
python3.14-primer3-py-2.3.0> Sourcing python-runtime-deps-check-hook
python3.14-primer3-py-2.3.0> Using pythonRuntimeDepsCheckHook
python3.14-primer3-py-2.3.0> Sourcing pypa-install-hook
python3.14-primer3-py-2.3.0> Using pypaInstallPhase
python3.14-primer3-py-2.3.0> Sourcing python-imports-check-hook.sh
python3.14-primer3-py-2.3.0> Using pythonImportsCheckPhase
python3.14-primer3-py-2.3.0> Sourcing python-metadata-check-hook.sh
python3.14-primer3-py-2.3.0> Using pythonMetadataCheckPhase
python3.14-primer3-py-2.3.0> Sourcing python-namespaces-hook
python3.14-primer3-py-2.3.0> Sourcing python-catch-conflicts-hook.sh
python3.14-primer3-py-2.3.0> Sourcing pytest-check-hook
python3.14-primer3-py-2.3.0> Using pytestCheckPhase
python3.14-primer3-py-2.3.0> Running phase: unpackPhase
python3.14-primer3-py-2.3.0> unpacking source archive /nix/store/i68fp24ajy3argnlxp2vjdas2bn3wv2x-source
python3.14-primer3-py-2.3.0> source root is source
python3.14-primer3-py-2.3.0> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/valgrind-python.supp"
python3.14-primer3-py-2.3.0> Running phase: patchPhase
python3.14-primer3-py-2.3.0> Running phase: updateAutotoolsGnuConfigScriptsPhase
python3.14-primer3-py-2.3.0> Running phase: configurePhase
python3.14-primer3-py-2.3.0> no configure script, doing nothing
python3.14-primer3-py-2.3.0> Running phase: buildPhase
python3.14-primer3-py-2.3.0> Executing pypaBuildPhase
python3.14-primer3-py-2.3.0> Creating a wheel...
python3.14-primer3-py-2.3.0> pypa build flags: --no-isolation --outdir dist/ --wheel
python3.14-primer3-py-2.3.0> * Getting build dependencies for wheel...
python3.14-primer3-py-2.3.0> [1/2] Cythonizing primer3/p3helpers.pyx
python3.14-primer3-py-2.3.0> warning: primer3/p3helpers.pyx:34:28: 'COMP_BASE_LUT' redeclared 
python3.14-primer3-py-2.3.0> warning: primer3/p3helpers.pyx:35:27: 'SANITIZE_LUT' redeclared 
python3.14-primer3-py-2.3.0> warning: primer3/p3helpers.pyx:36:29: 'ACGT_UPPER_LUT' redeclared 
python3.14-primer3-py-2.3.0> warning: primer3/p3helpers.pyx:37:36: 'IS_UPPERCASE_ACGT_LUT' redeclared 
python3.14-primer3-py-2.3.0> [2/2] Cythonizing primer3/thermoanalysis.pyx
python3.14-primer3-py-2.3.0> warning: primer3/thermoanalysis.pyx:1394:4: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         By 2027-Feb-18, you need to update your project and remove deprecated calls
python3.14-primer3-py-2.3.0>         or your builds will no longer be supported.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   corresp(dist, value, root_dir)
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         Please consider removing the following classifiers in favor of a SPDX license expression:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         License :: OSI Approved :: GNU General Public License v2 (GPLv2)
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   dist._finalize_license_expression()
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         Please consider removing the following classifiers in favor of a SPDX license expression:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         License :: OSI Approved :: GNU General Public License v2 (GPLv2)
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   self._finalize_license_expression()
python3.14-primer3-py-2.3.0> running egg_info
python3.14-primer3-py-2.3.0> creating primer3_py.egg-info
python3.14-primer3-py-2.3.0> writing primer3_py.egg-info/PKG-INFO
python3.14-primer3-py-2.3.0> writing dependency_links to primer3_py.egg-info/dependency_links.txt
python3.14-primer3-py-2.3.0> writing requirements to primer3_py.egg-info/requires.txt
python3.14-primer3-py-2.3.0> writing top-level names to primer3_py.egg-info/top_level.txt
python3.14-primer3-py-2.3.0> writing manifest file 'primer3_py.egg-info/SOURCES.txt'
python3.14-primer3-py-2.3.0> dependency /build/source/primer3/src/libprimer3/libprimer3.h won't be automatically included in the manifest: the path must be relative
python3.14-primer3-py-2.3.0> dependency /build/source/primer3/src/libprimer3/masker.h won't be automatically included in the manifest: the path must be relative
python3.14-primer3-py-2.3.0> dependency /build/source/primer3/src/libprimer3/oligotm.h won't be automatically included in the manifest: the path must be relative
python3.14-primer3-py-2.3.0> dependency /build/source/primer3/src/libprimer3/p3_seq_lib.h won't be automatically included in the manifest: the path must be relative
python3.14-primer3-py-2.3.0> dependency /build/source/primer3/src/libprimer3/read_boulder.h won't be automatically included in the manifest: the path must be relative
python3.14-primer3-py-2.3.0> dependency /build/source/primer3/src/libprimer3/thal.h won't be automatically included in the manifest: the path must be relative
python3.14-primer3-py-2.3.0> reading manifest file 'primer3_py.egg-info/SOURCES.txt'
python3.14-primer3-py-2.3.0> reading manifest template 'MANIFEST.in'
python3.14-primer3-py-2.3.0> warning: no files found matching '*.rst' under directory 'docs'
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.pyc' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.pyo' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.pyd' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.so' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.dylib' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.dll' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '__pycache__' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.egg-info' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '.DS_Store' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '.*.swp' found anywhere in distribution
python3.14-primer3-py-2.3.0> no previously-included directories found matching 'primer3/thermoanalysis.c'
python3.14-primer3-py-2.3.0> adding license file 'LICENSE'
python3.14-primer3-py-2.3.0> adding license file 'AUTHORS'
python3.14-primer3-py-2.3.0> writing manifest file 'primer3_py.egg-info/SOURCES.txt'
python3.14-primer3-py-2.3.0> * Building wheel...
python3.14-primer3-py-2.3.0> [1/2] Cythonizing primer3/p3helpers.pyx
python3.14-primer3-py-2.3.0> warning: primer3/p3helpers.pyx:34:28: 'COMP_BASE_LUT' redeclared 
python3.14-primer3-py-2.3.0> warning: primer3/p3helpers.pyx:35:27: 'SANITIZE_LUT' redeclared 
python3.14-primer3-py-2.3.0> warning: primer3/p3helpers.pyx:36:29: 'ACGT_UPPER_LUT' redeclared 
python3.14-primer3-py-2.3.0> warning: primer3/p3helpers.pyx:37:36: 'IS_UPPERCASE_ACGT_LUT' redeclared 
python3.14-primer3-py-2.3.0> [2/2] Cythonizing primer3/thermoanalysis.pyx
python3.14-primer3-py-2.3.0> warning: primer3/thermoanalysis.pyx:1394:4: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         By 2027-Feb-18, you need to update your project and remove deprecated calls
python3.14-primer3-py-2.3.0>         or your builds will no longer be supported.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   corresp(dist, value, root_dir)
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         Please consider removing the following classifiers in favor of a SPDX license expression:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         License :: OSI Approved :: GNU General Public License v2 (GPLv2)
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   dist._finalize_license_expression()
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         Please consider removing the following classifiers in favor of a SPDX license expression:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         License :: OSI Approved :: GNU General Public License v2 (GPLv2)
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   self._finalize_license_expression()
python3.14-primer3-py-2.3.0> running bdist_wheel
python3.14-primer3-py-2.3.0> running build
python3.14-primer3-py-2.3.0> running build_py
python3.14-primer3-py-2.3.0> creating build/lib.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> copying primer3/__init__.py -> build/lib.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> copying primer3/argdefaults.py -> build/lib.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> copying primer3/bindings.py -> build/lib.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> running egg_info
python3.14-primer3-py-2.3.0> writing primer3_py.egg-info/PKG-INFO
python3.14-primer3-py-2.3.0> writing dependency_links to primer3_py.egg-info/dependency_links.txt
python3.14-primer3-py-2.3.0> writing requirements to primer3_py.egg-info/requires.txt
python3.14-primer3-py-2.3.0> writing top-level names to primer3_py.egg-info/top_level.txt
python3.14-primer3-py-2.3.0> dependency /build/source/primer3/src/libprimer3/libprimer3.h won't be automatically included in the manifest: the path must be relative
python3.14-primer3-py-2.3.0> dependency /build/source/primer3/src/libprimer3/masker.h won't be automatically included in the manifest: the path must be relative
python3.14-primer3-py-2.3.0> dependency /build/source/primer3/src/libprimer3/oligotm.h won't be automatically included in the manifest: the path must be relative
python3.14-primer3-py-2.3.0> dependency /build/source/primer3/src/libprimer3/p3_seq_lib.h won't be automatically included in the manifest: the path must be relative
python3.14-primer3-py-2.3.0> dependency /build/source/primer3/src/libprimer3/read_boulder.h won't be automatically included in the manifest: the path must be relative
python3.14-primer3-py-2.3.0> dependency /build/source/primer3/src/libprimer3/thal.h won't be automatically included in the manifest: the path must be relative
python3.14-primer3-py-2.3.0> reading manifest file 'primer3_py.egg-info/SOURCES.txt'
python3.14-primer3-py-2.3.0> reading manifest template 'MANIFEST.in'
python3.14-primer3-py-2.3.0> warning: no files found matching '*.rst' under directory 'docs'
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.pyc' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.pyo' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.pyd' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.so' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.dylib' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.dll' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '__pycache__' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '*.egg-info' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '.DS_Store' found anywhere in distribution
python3.14-primer3-py-2.3.0> warning: no previously-included files matching '.*.swp' found anywhere in distribution
python3.14-primer3-py-2.3.0> no previously-included directories found matching 'primer3/thermoanalysis.c'
python3.14-primer3-py-2.3.0> adding license file 'LICENSE'
python3.14-primer3-py-2.3.0> adding license file 'AUTHORS'
python3.14-primer3-py-2.3.0> writing manifest file 'primer3_py.egg-info/SOURCES.txt'
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'primer3.src.libprimer3' is absent from the `packages` configuration.
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         ############################
python3.14-primer3-py-2.3.0>         # Package would be ignored #
python3.14-primer3-py-2.3.0>         ############################
python3.14-primer3-py-2.3.0>         Python recognizes 'primer3.src.libprimer3' as an importable package[^1],
python3.14-primer3-py-2.3.0>         but it is absent from setuptools' `packages` configuration.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         This leads to an ambiguous overall configuration. If you want to distribute this
python3.14-primer3-py-2.3.0>         package, please make sure that 'primer3.src.libprimer3' is explicitly added
python3.14-primer3-py-2.3.0>         to the `packages` configuration field.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         Alternatively, you can also rely on setuptools' discovery methods
python3.14-primer3-py-2.3.0>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
python3.14-primer3-py-2.3.0>         instead of `find_packages(...)`/`find:`).
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         You can read more about "package discovery" on setuptools documentation page:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         If you don't want 'primer3.src.libprimer3' to be distributed and are
python3.14-primer3-py-2.3.0>         already explicitly excluding 'primer3.src.libprimer3' via
python3.14-primer3-py-2.3.0>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
python3.14-primer3-py-2.3.0>         you can try to use `exclude_package_data`, or `include-package-data=False` in
python3.14-primer3-py-2.3.0>         combination with a more fine grained `package-data` configuration.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         You can read more about "package data files" on setuptools documentation page:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         [^1]: For Python, any directory (with suitable naming) can be imported,
python3.14-primer3-py-2.3.0>               even if it does not contain any `.py` files.
python3.14-primer3-py-2.3.0>               On the other hand, currently there is no concept of package data
python3.14-primer3-py-2.3.0>               directory, all directories are treated like packages.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   check.warn(importable)
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'primer3.src.libprimer3.klib' is absent from the `packages` configuration.
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         ############################
python3.14-primer3-py-2.3.0>         # Package would be ignored #
python3.14-primer3-py-2.3.0>         ############################
python3.14-primer3-py-2.3.0>         Python recognizes 'primer3.src.libprimer3.klib' as an importable package[^1],
python3.14-primer3-py-2.3.0>         but it is absent from setuptools' `packages` configuration.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         This leads to an ambiguous overall configuration. If you want to distribute this
python3.14-primer3-py-2.3.0>         package, please make sure that 'primer3.src.libprimer3.klib' is explicitly added
python3.14-primer3-py-2.3.0>         to the `packages` configuration field.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         Alternatively, you can also rely on setuptools' discovery methods
python3.14-primer3-py-2.3.0>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
python3.14-primer3-py-2.3.0>         instead of `find_packages(...)`/`find:`).
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         You can read more about "package discovery" on setuptools documentation page:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         If you don't want 'primer3.src.libprimer3.klib' to be distributed and are
python3.14-primer3-py-2.3.0>         already explicitly excluding 'primer3.src.libprimer3.klib' via
python3.14-primer3-py-2.3.0>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
python3.14-primer3-py-2.3.0>         you can try to use `exclude_package_data`, or `include-package-data=False` in
python3.14-primer3-py-2.3.0>         combination with a more fine grained `package-data` configuration.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         You can read more about "package data files" on setuptools documentation page:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         [^1]: For Python, any directory (with suitable naming) can be imported,
python3.14-primer3-py-2.3.0>               even if it does not contain any `.py` files.
python3.14-primer3-py-2.3.0>               On the other hand, currently there is no concept of package data
python3.14-primer3-py-2.3.0>               directory, all directories are treated like packages.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   check.warn(importable)
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'primer3.src.libprimer3.klib.test' is absent from the `packages` configuration.
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         ############################
python3.14-primer3-py-2.3.0>         # Package would be ignored #
python3.14-primer3-py-2.3.0>         ############################
python3.14-primer3-py-2.3.0>         Python recognizes 'primer3.src.libprimer3.klib.test' as an importable package[^1],
python3.14-primer3-py-2.3.0>         but it is absent from setuptools' `packages` configuration.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         This leads to an ambiguous overall configuration. If you want to distribute this
python3.14-primer3-py-2.3.0>         package, please make sure that 'primer3.src.libprimer3.klib.test' is explicitly added
python3.14-primer3-py-2.3.0>         to the `packages` configuration field.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         Alternatively, you can also rely on setuptools' discovery methods
python3.14-primer3-py-2.3.0>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
python3.14-primer3-py-2.3.0>         instead of `find_packages(...)`/`find:`).
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         You can read more about "package discovery" on setuptools documentation page:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         If you don't want 'primer3.src.libprimer3.klib.test' to be distributed and are
python3.14-primer3-py-2.3.0>         already explicitly excluding 'primer3.src.libprimer3.klib.test' via
python3.14-primer3-py-2.3.0>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
python3.14-primer3-py-2.3.0>         you can try to use `exclude_package_data`, or `include-package-data=False` in
python3.14-primer3-py-2.3.0>         combination with a more fine grained `package-data` configuration.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         You can read more about "package data files" on setuptools documentation page:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         [^1]: For Python, any directory (with suitable naming) can be imported,
python3.14-primer3-py-2.3.0>               even if it does not contain any `.py` files.
python3.14-primer3-py-2.3.0>               On the other hand, currently there is no concept of package data
python3.14-primer3-py-2.3.0>               directory, all directories are treated like packages.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   check.warn(importable)
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'primer3.src.libprimer3.primer3_config' is absent from the `packages` configuration.
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         ############################
python3.14-primer3-py-2.3.0>         # Package would be ignored #
python3.14-primer3-py-2.3.0>         ############################
python3.14-primer3-py-2.3.0>         Python recognizes 'primer3.src.libprimer3.primer3_config' as an importable package[^1],
python3.14-primer3-py-2.3.0>         but it is absent from setuptools' `packages` configuration.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         This leads to an ambiguous overall configuration. If you want to distribute this
python3.14-primer3-py-2.3.0>         package, please make sure that 'primer3.src.libprimer3.primer3_config' is explicitly added
python3.14-primer3-py-2.3.0>         to the `packages` configuration field.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         Alternatively, you can also rely on setuptools' discovery methods
python3.14-primer3-py-2.3.0>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
python3.14-primer3-py-2.3.0>         instead of `find_packages(...)`/`find:`).
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         You can read more about "package discovery" on setuptools documentation page:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         If you don't want 'primer3.src.libprimer3.primer3_config' to be distributed and are
python3.14-primer3-py-2.3.0>         already explicitly excluding 'primer3.src.libprimer3.primer3_config' via
python3.14-primer3-py-2.3.0>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
python3.14-primer3-py-2.3.0>         you can try to use `exclude_package_data`, or `include-package-data=False` in
python3.14-primer3-py-2.3.0>         combination with a more fine grained `package-data` configuration.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         You can read more about "package data files" on setuptools documentation page:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         [^1]: For Python, any directory (with suitable naming) can be imported,
python3.14-primer3-py-2.3.0>               even if it does not contain any `.py` files.
python3.14-primer3-py-2.3.0>               On the other hand, currently there is no concept of package data
python3.14-primer3-py-2.3.0>               directory, all directories are treated like packages.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   check.warn(importable)
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'primer3.src.libprimer3.primer3_config.interpretations' is absent from the `packages` configuration.
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         ############################
python3.14-primer3-py-2.3.0>         # Package would be ignored #
python3.14-primer3-py-2.3.0>         ############################
python3.14-primer3-py-2.3.0>         Python recognizes 'primer3.src.libprimer3.primer3_config.interpretations' as an importable package[^1],
python3.14-primer3-py-2.3.0>         but it is absent from setuptools' `packages` configuration.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         This leads to an ambiguous overall configuration. If you want to distribute this
python3.14-primer3-py-2.3.0>         package, please make sure that 'primer3.src.libprimer3.primer3_config.interpretations' is explicitly added
python3.14-primer3-py-2.3.0>         to the `packages` configuration field.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         Alternatively, you can also rely on setuptools' discovery methods
python3.14-primer3-py-2.3.0>         (for example by using `find_namespace_packages(...)`/`find_namespace:`
python3.14-primer3-py-2.3.0>         instead of `find_packages(...)`/`find:`).
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         You can read more about "package discovery" on setuptools documentation page:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         If you don't want 'primer3.src.libprimer3.primer3_config.interpretations' to be distributed and are
python3.14-primer3-py-2.3.0>         already explicitly excluding 'primer3.src.libprimer3.primer3_config.interpretations' via
python3.14-primer3-py-2.3.0>         `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
python3.14-primer3-py-2.3.0>         you can try to use `exclude_package_data`, or `include-package-data=False` in
python3.14-primer3-py-2.3.0>         combination with a more fine grained `package-data` configuration.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         You can read more about "package data files" on setuptools documentation page:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         [^1]: For Python, any directory (with suitable naming) can be imported,
python3.14-primer3-py-2.3.0>               even if it does not contain any `.py` files.
python3.14-primer3-py-2.3.0>               On the other hand, currently there is no concept of package data
python3.14-primer3-py-2.3.0>               directory, all directories are treated like packages.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   check.warn(importable)
python3.14-primer3-py-2.3.0> copying primer3/p3helpers.c -> build/lib.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> copying primer3/p3helpers.h -> build/lib.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> copying primer3/p3helpers.pxd -> build/lib.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> copying primer3/p3helpers.pyx -> build/lib.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> copying primer3/thermoanalysis.c -> build/lib.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> copying primer3/thermoanalysis.pxd -> build/lib.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> copying primer3/thermoanalysis.pxi -> build/lib.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> copying primer3/thermoanalysis.pyx -> build/lib.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> creating build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/ABOUT.txt -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/LICENSE.txt -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/Makefile -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/amplicontm.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/amplicontm.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/amplicontm_main.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/dpal.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/dpal.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/format_output.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/format_output.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/gpl-2.0.txt -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/humrep_and_simple.txt -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/libprimer3.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/libprimer3.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/libprimer3flex.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/libprimer3flex.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/long_seq_tm_test_main.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/masker.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/masker.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/masker_main.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/ntdpal_main.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/oligotm.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/oligotm.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/oligotm_main.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/p3_seq_lib.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/p3_seq_lib.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_boulder_main.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/print_boulder.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/print_boulder.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/read_boulder.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/read_boulder.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/release_notes.txt -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/thal.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/thal.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/thal_main.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/thal_parameters.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/thal_parameters.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/thalflex.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/thalflex.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/thalflexsignatures.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> creating build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/klib/README.md -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/klib/khash.h -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib
python3.14-primer3-py-2.3.0> creating build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib/test
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/klib/test/Makefile -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib/test
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/klib/test/khash_keith.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib/test
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/klib/test/khash_keith2.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib/test
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/klib/test/khash_test.c -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib/test
python3.14-primer3-py-2.3.0> creating build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/dangle.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/dangle.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/loops.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/loops.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/stack.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/stack.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/stackmm.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/stackmm.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/tetraloop.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/tetraloop.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/triloop.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/triloop.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/tstack.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/tstack2.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/tstack2.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/tstack_tm_inf.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> creating build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/dangle_i.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/dangle_i.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/loops_i.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/loops_i.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/stack_i.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/stack_i.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/stackmm_i_mm.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/stackmm_i_mm.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/tetraloop_i.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/tetraloop_i.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/triloop_i.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/triloop_i.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/tstack2_i.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/tstack2_i.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/tstack_i.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/tstack_i.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/tstack_tm_inf_i.dh -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying primer3/src/libprimer3/primer3_config/interpretations/tstack_tm_inf_i.ds -> build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> running build_ext
python3.14-primer3-py-2.3.0> no windows
python3.14-primer3-py-2.3.0> rm -f *.o primer3_core ntdpal ntthal amplicon3_core oligotm long_seq_tm_test primer3_masker *~ libprimer3.a libdpal.a libthal.a libthalpara.a liboligotm.a libamplicontm.a libmasker.a libprimer3.so.1.0.0 libdpal.a.so.1.0.0 libthal.a.so.1.0.0 libthalpara.a.so.1.0.0 libamplicontm.so.1.0.0 liboligotm.so.1.2.0 libmasker.a.so.1.0.0 example.for example.rev example.int core ../*~
python3.14-primer3-py-2.3.0> no windows
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib  primer3_boulder_main.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib  -o format_output.o format_output.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib  -o read_boulder.o read_boulder.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib  -o print_boulder.o print_boulder.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -Wno-deprecated  -o libprimer3.o libprimer3.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -o p3_seq_lib.o p3_seq_lib.c
python3.14-primer3-py-2.3.0> ar rv libprimer3.a libprimer3.o p3_seq_lib.o
python3.14-primer3-py-2.3.0> ar: creating libprimer3.a
python3.14-primer3-py-2.3.0> a - libprimer3.o
python3.14-primer3-py-2.3.0> a - p3_seq_lib.o
python3.14-primer3-py-2.3.0> ranlib libprimer3.a
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib  -o dpal_primer.o dpal.c
python3.14-primer3-py-2.3.0> ar rv libdpal.a dpal_primer.o
python3.14-primer3-py-2.3.0> ar: creating libdpal.a
python3.14-primer3-py-2.3.0> a - dpal_primer.o
python3.14-primer3-py-2.3.0> ranlib libdpal.a
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -ffloat-store  -o thal_primer.o thal.c
python3.14-primer3-py-2.3.0> ar rv libthal.a thal_primer.o
python3.14-primer3-py-2.3.0> ar: creating libthal.a
python3.14-primer3-py-2.3.0> a - thal_primer.o
python3.14-primer3-py-2.3.0> ranlib libthal.a
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -ffloat-store  -o thal_parameters.o thal_parameters.c
python3.14-primer3-py-2.3.0> ar rv libthalpara.a thal_parameters.o
python3.14-primer3-py-2.3.0> ar: creating libthalpara.a
python3.14-primer3-py-2.3.0> a - thal_parameters.o
python3.14-primer3-py-2.3.0> ranlib libthalpara.a
python3.14-primer3-py-2.3.0> cc -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib   -c -o oligotm.o oligotm.c
python3.14-primer3-py-2.3.0> ar rv liboligotm.a oligotm.o
python3.14-primer3-py-2.3.0> ar: creating liboligotm.a
python3.14-primer3-py-2.3.0> a - oligotm.o
python3.14-primer3-py-2.3.0> ranlib liboligotm.a
python3.14-primer3-py-2.3.0> cc -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib   -c -o amplicontm.o amplicontm.c
python3.14-primer3-py-2.3.0> ar rv libamplicontm.a amplicontm.o
python3.14-primer3-py-2.3.0> ar: creating libamplicontm.a
python3.14-primer3-py-2.3.0> a - amplicontm.o
python3.14-primer3-py-2.3.0> ranlib libamplicontm.a
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib  masker.c
python3.14-primer3-py-2.3.0> ar rv libmasker.a masker.o
python3.14-primer3-py-2.3.0> ar: creating libmasker.a
python3.14-primer3-py-2.3.0> a - masker.o
python3.14-primer3-py-2.3.0> ranlib libmasker.a
python3.14-primer3-py-2.3.0> cc -g -o primer3_core primer3_boulder_main.o format_output.o read_boulder.o print_boulder.o libprimer3.a libdpal.a libthal.a libthalpara.a liboligotm.a libamplicontm.a libmasker.a  -lm
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -o ntdpal_main.o ntdpal_main.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -o dpal.o dpal.c
python3.14-primer3-py-2.3.0> cc -g -o ntdpal ntdpal_main.o dpal.o
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -o thal_main.o thal_main.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -ffloat-store -o thal.o thal.c
python3.14-primer3-py-2.3.0> cc -g -o ntthal thal_main.o thal.o thal_parameters.o -lm
python3.14-primer3-py-2.3.0> cc -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -o amplicon3_core amplicontm_main.c libamplicontm.a  -lm
python3.14-primer3-py-2.3.0> cc -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -o oligotm oligotm_main.c liboligotm.a  -lm
python3.14-primer3-py-2.3.0> cc -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -o long_seq_tm_test long_seq_tm_test_main.c oligotm.o  -lm
python3.14-primer3-py-2.3.0> cc -g -o primer3_masker masker_main.c libprimer3.a libdpal.a libthal.a libthalpara.a liboligotm.a libamplicontm.a libmasker.a  -lm
python3.14-primer3-py-2.3.0> building 'primer3.p3helpers' extension
python3.14-primer3-py-2.3.0> creating build/temp.linux-x86_64-cpython-314/primer3
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3 -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/p3helpers.c -o build/temp.linux-x86_64-cpython-314/primer3/p3helpers.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/primer3/p3helpers.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/primer3/p3helpers.cpython-314-x86_64-linux-gnu.so
python3.14-primer3-py-2.3.0> building 'primer3.thermoanalysis' extension
python3.14-primer3-py-2.3.0> creating build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/dpal.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/dpal.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/libprimer3flex.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/libprimer3flex.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/masker.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/masker.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/oligotm.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/oligotm.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/p3_seq_lib.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/p3_seq_lib.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/read_boulder.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/read_boulder.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/thal_parameters.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/thal_parameters.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/thalflex.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/thalflex.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> In file included from /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/string.h:548,
python3.14-primer3-py-2.3.0>                  from primer3/src/libprimer3/thalflex.c:66:
python3.14-primer3-py-2.3.0> In function ‘strcpy’,
python3.14-primer3-py-2.3.0>     inlined from ‘safe_malloc’ at primer3/src/libprimer3/thalflex.c:916:5,
python3.14-primer3-py-2.3.0>     inlined from ‘calc_hairpin’ at primer3/src/libprimer3/thalflex.c:1842:18:
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: warning: argument 1 null where non-null expected because argument 3 is nonzero [-Wnonnull]
python3.14-primer3-py-2.3.0>    81 |   return __builtin___strcpy_chk (__dest, __src, __glibc_objsize (__dest));
python3.14-primer3-py-2.3.0>       |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: note: in a call to built-in function ‘__builtin___memcpy_chk’
python3.14-primer3-py-2.3.0> In function ‘strcpy’,
python3.14-primer3-py-2.3.0>     inlined from ‘safe_malloc’ at primer3/src/libprimer3/thalflex.c:916:5,
python3.14-primer3-py-2.3.0>     inlined from ‘calc_bulge_internal.constprop’ at primer3/src/libprimer3/thalflex.c:1946:18:
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: warning: argument 1 null where non-null expected because argument 3 is nonzero [-Wnonnull]
python3.14-primer3-py-2.3.0>    81 |   return __builtin___strcpy_chk (__dest, __src, __glibc_objsize (__dest));
python3.14-primer3-py-2.3.0>       |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: note: in a call to built-in function ‘__builtin___memcpy_chk’
python3.14-primer3-py-2.3.0> In function ‘strcpy’,
python3.14-primer3-py-2.3.0>     inlined from ‘safe_malloc’ at primer3/src/libprimer3/thalflex.c:916:5,
python3.14-primer3-py-2.3.0>     inlined from ‘maxTM’ at primer3/src/libprimer3/thalflex.h:752:18,
python3.14-primer3-py-2.3.0>     inlined from ‘fillMatrix.constprop’ at primer3/src/libprimer3/thalflex.c:1701:11:
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: warning: argument 1 null where non-null expected because argument 3 is nonzero [-Wnonnull]
python3.14-primer3-py-2.3.0>    81 |   return __builtin___strcpy_chk (__dest, __src, __glibc_objsize (__dest));
python3.14-primer3-py-2.3.0>       |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: note: in a call to built-in function ‘__builtin___memcpy_chk’
python3.14-primer3-py-2.3.0> In function ‘strcpy’,
python3.14-primer3-py-2.3.0>     inlined from ‘safe_malloc’ at primer3/src/libprimer3/thalflex.c:916:5,
python3.14-primer3-py-2.3.0>     inlined from ‘calc_bulge_internal’ at primer3/src/libprimer3/thalflex.c:1946:18,
python3.14-primer3-py-2.3.0>     inlined from ‘fillMatrix.constprop’ at primer3/src/libprimer3/thalflex.c:1721:17:
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: warning: argument 1 null where non-null expected because argument 3 is nonzero [-Wnonnull]
python3.14-primer3-py-2.3.0>    81 |   return __builtin___strcpy_chk (__dest, __src, __glibc_objsize (__dest));
python3.14-primer3-py-2.3.0>       |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: note: in a call to built-in function ‘__builtin___memcpy_chk’
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/thermoanalysis.c -o build/temp.linux-x86_64-cpython-314/primer3/thermoanalysis.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/dpal.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/libprimer3flex.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/masker.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/oligotm.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/p3_seq_lib.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/read_boulder.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/thal_parameters.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/thalflex.o build/temp.linux-x86_64-cpython-314/primer3/thermoanalysis.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/primer3/thermoanalysis.cpython-314-x86_64-linux-gnu.so
python3.14-primer3-py-2.3.0> installing to build/bdist.linux-x86_64/wheel
python3.14-primer3-py-2.3.0> running install
python3.14-primer3-py-2.3.0> running install_lib
python3.14-primer3-py-2.3.0> creating build/bdist.linux-x86_64/wheel
python3.14-primer3-py-2.3.0> creating build/bdist.linux-x86_64/wheel/primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/__init__.py -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/argdefaults.py -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/bindings.py -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/p3helpers.c -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/p3helpers.h -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/p3helpers.pxd -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/p3helpers.pyx -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/thermoanalysis.c -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/thermoanalysis.pxd -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/thermoanalysis.pxi -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/thermoanalysis.pyx -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> creating build/bdist.linux-x86_64/wheel/primer3/src
python3.14-primer3-py-2.3.0> creating build/bdist.linux-x86_64/wheel/primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/ABOUT.txt -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/LICENSE.txt -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/Makefile -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/amplicontm.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/amplicontm.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/amplicontm_main.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/dpal.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/dpal.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/format_output.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/format_output.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/gpl-2.0.txt -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/humrep_and_simple.txt -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/libprimer3.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/libprimer3.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/libprimer3flex.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/libprimer3flex.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/long_seq_tm_test_main.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/masker.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/masker.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/masker_main.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/ntdpal_main.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/oligotm.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/oligotm.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/oligotm_main.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/p3_seq_lib.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/p3_seq_lib.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_boulder_main.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/print_boulder.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/print_boulder.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/read_boulder.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/read_boulder.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/release_notes.txt -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/thal.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/thal.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/thal_main.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/thal_parameters.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/thal_parameters.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/thalflex.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/thalflex.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/thalflexsignatures.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3
python3.14-primer3-py-2.3.0> creating build/bdist.linux-x86_64/wheel/primer3/src/libprimer3/klib
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib/README.md -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/klib
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib/khash.h -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/klib
python3.14-primer3-py-2.3.0> creating build/bdist.linux-x86_64/wheel/primer3/src/libprimer3/klib/test
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib/test/Makefile -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/klib/test
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib/test/khash_keith.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/klib/test
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib/test/khash_keith2.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/klib/test
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/klib/test/khash_test.c -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/klib/test
python3.14-primer3-py-2.3.0> creating build/bdist.linux-x86_64/wheel/primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/dangle.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/dangle.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/loops.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/loops.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/stack.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/stack.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/stackmm.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/stackmm.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/tetraloop.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/tetraloop.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/triloop.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/triloop.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/tstack.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/tstack2.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/tstack2.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/tstack_tm_inf.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config
python3.14-primer3-py-2.3.0> creating build/bdist.linux-x86_64/wheel/primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/dangle_i.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/dangle_i.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/loops_i.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/loops_i.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/stack_i.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/stack_i.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/stackmm_i_mm.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/stackmm_i_mm.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/tetraloop_i.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/tetraloop_i.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/triloop_i.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/triloop_i.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/tstack2_i.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/tstack2_i.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/tstack_i.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/tstack_i.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/tstack_tm_inf_i.dh -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/src/libprimer3/primer3_config/interpretations/tstack_tm_inf_i.ds -> build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_config/interpretations
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/p3helpers.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/thermoanalysis.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./primer3
python3.14-primer3-py-2.3.0> Adding executable bit to build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/amplicon3_core (mode is now 755)
python3.14-primer3-py-2.3.0> Adding executable bit to build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/oligotm (mode is now 755)
python3.14-primer3-py-2.3.0> Adding executable bit to build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/ntdpal (mode is now 755)
python3.14-primer3-py-2.3.0> Adding executable bit to build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/ntthal (mode is now 755)
python3.14-primer3-py-2.3.0> Adding executable bit to build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_core (mode is now 755)
python3.14-primer3-py-2.3.0> Adding executable bit to build/bdist.linux-x86_64/wheel/./primer3/src/libprimer3/primer3_masker (mode is now 755)
python3.14-primer3-py-2.3.0> running install_egg_info
python3.14-primer3-py-2.3.0> Copying primer3_py.egg-info to build/bdist.linux-x86_64/wheel/./primer3_py-2.3.0-py3.14.egg-info
python3.14-primer3-py-2.3.0> running install_scripts
python3.14-primer3-py-2.3.0> creating build/bdist.linux-x86_64/wheel/primer3_py-2.3.0.dist-info/WHEEL
python3.14-primer3-py-2.3.0> creating '/build/source/dist/.tmp-cg_zfd6f/primer3_py-2.3.0-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
python3.14-primer3-py-2.3.0> adding 'primer3/__init__.py'
python3.14-primer3-py-2.3.0> adding 'primer3/argdefaults.py'
python3.14-primer3-py-2.3.0> adding 'primer3/bindings.py'
python3.14-primer3-py-2.3.0> adding 'primer3/p3helpers.c'
python3.14-primer3-py-2.3.0> adding 'primer3/p3helpers.cpython-314-x86_64-linux-gnu.so'
python3.14-primer3-py-2.3.0> adding 'primer3/p3helpers.h'
python3.14-primer3-py-2.3.0> adding 'primer3/p3helpers.pxd'
python3.14-primer3-py-2.3.0> adding 'primer3/p3helpers.pyx'
python3.14-primer3-py-2.3.0> adding 'primer3/thermoanalysis.c'
python3.14-primer3-py-2.3.0> adding 'primer3/thermoanalysis.cpython-314-x86_64-linux-gnu.so'
python3.14-primer3-py-2.3.0> adding 'primer3/thermoanalysis.pxd'
python3.14-primer3-py-2.3.0> adding 'primer3/thermoanalysis.pxi'
python3.14-primer3-py-2.3.0> adding 'primer3/thermoanalysis.pyx'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/ABOUT.txt'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/LICENSE.txt'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/Makefile'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/amplicon3_core'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/amplicontm.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/amplicontm.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/amplicontm_main.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/dpal.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/dpal.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/format_output.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/format_output.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/gpl-2.0.txt'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/humrep_and_simple.txt'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/libprimer3.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/libprimer3.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/libprimer3flex.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/libprimer3flex.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/long_seq_tm_test_main.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/masker.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/masker.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/masker_main.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/ntdpal'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/ntdpal_main.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/ntthal'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/oligotm'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/oligotm.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/oligotm.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/oligotm_main.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/p3_seq_lib.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/p3_seq_lib.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_boulder_main.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_core'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_masker'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/print_boulder.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/print_boulder.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/read_boulder.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/read_boulder.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/release_notes.txt'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/thal.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/thal.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/thal_main.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/thal_parameters.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/thal_parameters.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/thalflex.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/thalflex.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/thalflexsignatures.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/klib/README.md'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/klib/khash.h'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/klib/test/Makefile'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/klib/test/khash_keith.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/klib/test/khash_keith2.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/klib/test/khash_test.c'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/dangle.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/dangle.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/loops.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/loops.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/stack.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/stack.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/stackmm.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/stackmm.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/tetraloop.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/tetraloop.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/triloop.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/triloop.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/tstack.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/tstack2.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/tstack2.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/tstack_tm_inf.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/dangle_i.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/dangle_i.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/loops_i.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/loops_i.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/stack_i.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/stack_i.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/stackmm_i_mm.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/stackmm_i_mm.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/tetraloop_i.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/tetraloop_i.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/triloop_i.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/triloop_i.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/tstack2_i.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/tstack2_i.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/tstack_i.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/tstack_i.ds'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/tstack_tm_inf_i.dh'
python3.14-primer3-py-2.3.0> adding 'primer3/src/libprimer3/primer3_config/interpretations/tstack_tm_inf_i.ds'
python3.14-primer3-py-2.3.0> adding 'primer3_py-2.3.0.dist-info/licenses/AUTHORS'
python3.14-primer3-py-2.3.0> adding 'primer3_py-2.3.0.dist-info/licenses/LICENSE'
python3.14-primer3-py-2.3.0> adding 'primer3_py-2.3.0.dist-info/METADATA'
python3.14-primer3-py-2.3.0> adding 'primer3_py-2.3.0.dist-info/WHEEL'
python3.14-primer3-py-2.3.0> adding 'primer3_py-2.3.0.dist-info/top_level.txt'
python3.14-primer3-py-2.3.0> adding 'primer3_py-2.3.0.dist-info/RECORD'
python3.14-primer3-py-2.3.0> removing build/bdist.linux-x86_64/wheel
python3.14-primer3-py-2.3.0> Successfully built primer3_py-2.3.0-cp314-cp314-linux_x86_64.whl
python3.14-primer3-py-2.3.0> Finished creating a wheel...
python3.14-primer3-py-2.3.0> Finished executing pypaBuildPhase
python3.14-primer3-py-2.3.0> buildPhase completed in 31 seconds
python3.14-primer3-py-2.3.0> Running phase: pythonRuntimeDepsCheckHook
python3.14-primer3-py-2.3.0> Executing pythonRuntimeDepsCheck
python3.14-primer3-py-2.3.0> Checking runtime dependencies for primer3_py-2.3.0-cp314-cp314-linux_x86_64.whl
python3.14-primer3-py-2.3.0> Finished executing pythonRuntimeDepsCheck
python3.14-primer3-py-2.3.0> Running phase: installPhase
python3.14-primer3-py-2.3.0> Executing pypaInstallPhase
python3.14-primer3-py-2.3.0> Successfully installed primer3_py-2.3.0-cp314-cp314-linux_x86_64.whl
python3.14-primer3-py-2.3.0> Finished executing pypaInstallPhase
python3.14-primer3-py-2.3.0> Running phase: pythonOutputDistPhase
python3.14-primer3-py-2.3.0> Executing pythonOutputDistPhase
python3.14-primer3-py-2.3.0> Finished executing pythonOutputDistPhase
python3.14-primer3-py-2.3.0> Running phase: fixupPhase
python3.14-primer3-py-2.3.0> shrinking RPATHs of ELF executables and libraries in /nix/store/wv4an64ipn6b5vz74vfynjgarv6v0arc-python3.14-primer3-py-2.3.0
python3.14-primer3-py-2.3.0> shrinking /nix/store/wv4an64ipn6b5vz74vfynjgarv6v0arc-python3.14-primer3-py-2.3.0/lib/python3.14/site-packages/primer3/p3helpers.cpython-314-x86_64-linux-gnu.so
python3.14-primer3-py-2.3.0> shrinking /nix/store/wv4an64ipn6b5vz74vfynjgarv6v0arc-python3.14-primer3-py-2.3.0/lib/python3.14/site-packages/primer3/thermoanalysis.cpython-314-x86_64-linux-gnu.so
python3.14-primer3-py-2.3.0> shrinking /nix/store/wv4an64ipn6b5vz74vfynjgarv6v0arc-python3.14-primer3-py-2.3.0/lib/python3.14/site-packages/primer3/src/libprimer3/amplicon3_core
python3.14-primer3-py-2.3.0> shrinking /nix/store/wv4an64ipn6b5vz74vfynjgarv6v0arc-python3.14-primer3-py-2.3.0/lib/python3.14/site-packages/primer3/src/libprimer3/ntdpal
python3.14-primer3-py-2.3.0> shrinking /nix/store/wv4an64ipn6b5vz74vfynjgarv6v0arc-python3.14-primer3-py-2.3.0/lib/python3.14/site-packages/primer3/src/libprimer3/ntthal
python3.14-primer3-py-2.3.0> shrinking /nix/store/wv4an64ipn6b5vz74vfynjgarv6v0arc-python3.14-primer3-py-2.3.0/lib/python3.14/site-packages/primer3/src/libprimer3/oligotm
python3.14-primer3-py-2.3.0> shrinking /nix/store/wv4an64ipn6b5vz74vfynjgarv6v0arc-python3.14-primer3-py-2.3.0/lib/python3.14/site-packages/primer3/src/libprimer3/primer3_core
python3.14-primer3-py-2.3.0> shrinking /nix/store/wv4an64ipn6b5vz74vfynjgarv6v0arc-python3.14-primer3-py-2.3.0/lib/python3.14/site-packages/primer3/src/libprimer3/primer3_masker
python3.14-primer3-py-2.3.0> checking for references to /build/ in /nix/store/wv4an64ipn6b5vz74vfynjgarv6v0arc-python3.14-primer3-py-2.3.0...
python3.14-primer3-py-2.3.0> patching script interpreter paths in /nix/store/wv4an64ipn6b5vz74vfynjgarv6v0arc-python3.14-primer3-py-2.3.0
python3.14-primer3-py-2.3.0> stripping (with command strip and flags -S -p) in  /nix/store/wv4an64ipn6b5vz74vfynjgarv6v0arc-python3.14-primer3-py-2.3.0/lib
python3.14-primer3-py-2.3.0> shrinking RPATHs of ELF executables and libraries in /nix/store/f4aigqa6qbxxp56zfcdvra2ax96awki9-python3.14-primer3-py-2.3.0-dist
python3.14-primer3-py-2.3.0> checking for references to /build/ in /nix/store/f4aigqa6qbxxp56zfcdvra2ax96awki9-python3.14-primer3-py-2.3.0-dist...
python3.14-primer3-py-2.3.0> patching script interpreter paths in /nix/store/f4aigqa6qbxxp56zfcdvra2ax96awki9-python3.14-primer3-py-2.3.0-dist
python3.14-primer3-py-2.3.0> Executing pythonRemoveTestsDir
python3.14-primer3-py-2.3.0> Finished executing pythonRemoveTestsDir
python3.14-primer3-py-2.3.0> Running phase: installCheckPhase
python3.14-primer3-py-2.3.0> no Makefile or custom installCheckPhase, doing nothing
python3.14-primer3-py-2.3.0> Running phase: pythonCatchConflictsPhase
python3.14-primer3-py-2.3.0> Running phase: pythonRemoveBinBytecodePhase
python3.14-primer3-py-2.3.0> Running phase: pythonImportsCheckPhase
python3.14-primer3-py-2.3.0> Executing pythonImportsCheckPhase
python3.14-primer3-py-2.3.0> Check whether the following modules can be imported: primer3 primer3.bindings
python3.14-primer3-py-2.3.0> Running phase: pythonMetadataCheckPhase
python3.14-primer3-py-2.3.0> Executing pythonMetadataCheckPhase
python3.14-primer3-py-2.3.0> Running phase: pytestCheckPhase
python3.14-primer3-py-2.3.0> Executing pytestCheckPhase
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/_distutils_hack/__init__.py:15: UserWarning: Distutils was imported before Setuptools, but importing Setuptools also replaces the `distutils` module in `sys.modules`. This may lead to undesirable behaviors or errors. To avoid these issues, avoid using distutils directly, ensure that setuptools is installed in the traditional way (e.g. not an editable install), and/or make sure that setuptools is always imported before distutils.
python3.14-primer3-py-2.3.0>   warnings.warn(
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/_distutils_hack/__init__.py:30: UserWarning: Setuptools is replacing distutils. Support for replacing an already imported distutils is deprecated. In the future, this condition will fail. Register concerns at https://github.com/pypa/setuptools/issues/new?template=distutils-deprecation.yml
python3.14-primer3-py-2.3.0>   warnings.warn(
python3.14-primer3-py-2.3.0> no windows
python3.14-primer3-py-2.3.0> rm -f *.o primer3_core ntdpal ntthal amplicon3_core oligotm long_seq_tm_test primer3_masker *~ libprimer3.a libdpal.a libthal.a libthalpara.a liboligotm.a libamplicontm.a libmasker.a libprimer3.so.1.0.0 libdpal.a.so.1.0.0 libthal.a.so.1.0.0 libthalpara.a.so.1.0.0 libamplicontm.so.1.0.0 liboligotm.so.1.2.0 libmasker.a.so.1.0.0 example.for example.rev example.int core ../*~
python3.14-primer3-py-2.3.0> no windows
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib  primer3_boulder_main.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib  -o format_output.o format_output.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib  -o read_boulder.o read_boulder.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib  -o print_boulder.o print_boulder.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -Wno-deprecated  -o libprimer3.o libprimer3.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -o p3_seq_lib.o p3_seq_lib.c
python3.14-primer3-py-2.3.0> ar rv libprimer3.a libprimer3.o p3_seq_lib.o
python3.14-primer3-py-2.3.0> ar: creating libprimer3.a
python3.14-primer3-py-2.3.0> a - libprimer3.o
python3.14-primer3-py-2.3.0> a - p3_seq_lib.o
python3.14-primer3-py-2.3.0> ranlib libprimer3.a
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib  -o dpal_primer.o dpal.c
python3.14-primer3-py-2.3.0> ar rv libdpal.a dpal_primer.o
python3.14-primer3-py-2.3.0> ar: creating libdpal.a
python3.14-primer3-py-2.3.0> a - dpal_primer.o
python3.14-primer3-py-2.3.0> ranlib libdpal.a
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -ffloat-store  -o thal_primer.o thal.c
python3.14-primer3-py-2.3.0> ar rv libthal.a thal_primer.o
python3.14-primer3-py-2.3.0> ar: creating libthal.a
python3.14-primer3-py-2.3.0> a - thal_primer.o
python3.14-primer3-py-2.3.0> ranlib libthal.a
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -ffloat-store  -o thal_parameters.o thal_parameters.c
python3.14-primer3-py-2.3.0> ar rv libthalpara.a thal_parameters.o
python3.14-primer3-py-2.3.0> ar: creating libthalpara.a
python3.14-primer3-py-2.3.0> a - thal_parameters.o
python3.14-primer3-py-2.3.0> ranlib libthalpara.a
python3.14-primer3-py-2.3.0> cc -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib   -c -o oligotm.o oligotm.c
python3.14-primer3-py-2.3.0> ar rv liboligotm.a oligotm.o
python3.14-primer3-py-2.3.0> ar: creating liboligotm.a
python3.14-primer3-py-2.3.0> a - oligotm.o
python3.14-primer3-py-2.3.0> ranlib liboligotm.a
python3.14-primer3-py-2.3.0> cc -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib   -c -o amplicontm.o amplicontm.c
python3.14-primer3-py-2.3.0> ar rv libamplicontm.a amplicontm.o
python3.14-primer3-py-2.3.0> ar: creating libamplicontm.a
python3.14-primer3-py-2.3.0> a - amplicontm.o
python3.14-primer3-py-2.3.0> ranlib libamplicontm.a
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib  masker.c
python3.14-primer3-py-2.3.0> ar rv libmasker.a masker.o
python3.14-primer3-py-2.3.0> ar: creating libmasker.a
python3.14-primer3-py-2.3.0> a - masker.o
python3.14-primer3-py-2.3.0> ranlib libmasker.a
python3.14-primer3-py-2.3.0> cc -g -o primer3_core primer3_boulder_main.o format_output.o read_boulder.o print_boulder.o libprimer3.a libdpal.a libthal.a libthalpara.a liboligotm.a libamplicontm.a libmasker.a  -lm
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -o ntdpal_main.o ntdpal_main.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -o dpal.o dpal.c
python3.14-primer3-py-2.3.0> cc -g -o ntdpal ntdpal_main.o dpal.o
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -o thal_main.o thal_main.c
python3.14-primer3-py-2.3.0> cc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -ffloat-store -o thal.o thal.c
python3.14-primer3-py-2.3.0> cc -g -o ntthal thal_main.o thal.o thal_parameters.o -lm
python3.14-primer3-py-2.3.0> cc -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -o amplicon3_core amplicontm_main.c libamplicontm.a  -lm
python3.14-primer3-py-2.3.0> cc -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -o oligotm oligotm_main.c liboligotm.a  -lm
python3.14-primer3-py-2.3.0> cc -g -Wall -D__USE_FIXED_PROTOTYPES__ -O2 -I klib -o long_seq_tm_test long_seq_tm_test_main.c oligotm.o  -lm
python3.14-primer3-py-2.3.0> cc -g -o primer3_masker masker_main.c libprimer3.a libdpal.a libthal.a libthalpara.a liboligotm.a libamplicontm.a libmasker.a  -lm
python3.14-primer3-py-2.3.0> [1/2] Cythonizing primer3/p3helpers.pyx
python3.14-primer3-py-2.3.0> warning: primer3/p3helpers.pyx:34:28: 'COMP_BASE_LUT' redeclared 
python3.14-primer3-py-2.3.0> warning: primer3/p3helpers.pyx:35:27: 'SANITIZE_LUT' redeclared 
python3.14-primer3-py-2.3.0> warning: primer3/p3helpers.pyx:36:29: 'ACGT_UPPER_LUT' redeclared 
python3.14-primer3-py-2.3.0> warning: primer3/p3helpers.pyx:37:36: 'IS_UPPERCASE_ACGT_LUT' redeclared 
python3.14-primer3-py-2.3.0> [2/2] Cythonizing primer3/thermoanalysis.pyx
python3.14-primer3-py-2.3.0> warning: primer3/thermoanalysis.pyx:1394:4: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         By 2027-Feb-18, you need to update your project and remove deprecated calls
python3.14-primer3-py-2.3.0>         or your builds will no longer be supported.
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   corresp(dist, value, root_dir)
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         Please consider removing the following classifiers in favor of a SPDX license expression:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         License :: OSI Approved :: GNU General Public License v2 (GPLv2)
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   dist._finalize_license_expression()
python3.14-primer3-py-2.3.0> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0>         Please consider removing the following classifiers in favor of a SPDX license expression:
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         License :: OSI Approved :: GNU General Public License v2 (GPLv2)
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0>         See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
python3.14-primer3-py-2.3.0>         ********************************************************************************
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> !!
python3.14-primer3-py-2.3.0>   self._finalize_license_expression()
python3.14-primer3-py-2.3.0> running build_ext
python3.14-primer3-py-2.3.0> building 'primer3.p3helpers' extension
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3 -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/p3helpers.c -o build/temp.linux-x86_64-cpython-314/primer3/p3helpers.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/primer3/p3helpers.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/primer3/p3helpers.cpython-314-x86_64-linux-gnu.so
python3.14-primer3-py-2.3.0> building 'primer3.thermoanalysis' extension
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/dpal.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/dpal.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/libprimer3flex.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/libprimer3flex.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/masker.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/masker.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/oligotm.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/oligotm.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/p3_seq_lib.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/p3_seq_lib.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/read_boulder.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/read_boulder.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/thal_parameters.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/thal_parameters.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/src/libprimer3/thalflex.c -o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/thalflex.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> In file included from /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/string.h:548,
python3.14-primer3-py-2.3.0>                  from primer3/src/libprimer3/thalflex.c:66:
python3.14-primer3-py-2.3.0> In function ‘strcpy’,
python3.14-primer3-py-2.3.0>     inlined from ‘safe_malloc’ at primer3/src/libprimer3/thalflex.c:916:5,
python3.14-primer3-py-2.3.0>     inlined from ‘calc_hairpin’ at primer3/src/libprimer3/thalflex.c:1842:18:
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: warning: argument 1 null where non-null expected because argument 3 is nonzero [-Wnonnull]
python3.14-primer3-py-2.3.0>    81 |   return __builtin___strcpy_chk (__dest, __src, __glibc_objsize (__dest));
python3.14-primer3-py-2.3.0>       |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: note: in a call to built-in function ‘__builtin___memcpy_chk’
python3.14-primer3-py-2.3.0> In function ‘strcpy’,
python3.14-primer3-py-2.3.0>     inlined from ‘safe_malloc’ at primer3/src/libprimer3/thalflex.c:916:5,
python3.14-primer3-py-2.3.0>     inlined from ‘calc_bulge_internal.constprop’ at primer3/src/libprimer3/thalflex.c:1946:18:
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: warning: argument 1 null where non-null expected because argument 3 is nonzero [-Wnonnull]
python3.14-primer3-py-2.3.0>    81 |   return __builtin___strcpy_chk (__dest, __src, __glibc_objsize (__dest));
python3.14-primer3-py-2.3.0>       |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: note: in a call to built-in function ‘__builtin___memcpy_chk’
python3.14-primer3-py-2.3.0> In function ‘strcpy’,
python3.14-primer3-py-2.3.0>     inlined from ‘safe_malloc’ at primer3/src/libprimer3/thalflex.c:916:5,
python3.14-primer3-py-2.3.0>     inlined from ‘maxTM’ at primer3/src/libprimer3/thalflex.h:752:18,
python3.14-primer3-py-2.3.0>     inlined from ‘fillMatrix.constprop’ at primer3/src/libprimer3/thalflex.c:1701:11:
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: warning: argument 1 null where non-null expected because argument 3 is nonzero [-Wnonnull]
python3.14-primer3-py-2.3.0>    81 |   return __builtin___strcpy_chk (__dest, __src, __glibc_objsize (__dest));
python3.14-primer3-py-2.3.0>       |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: note: in a call to built-in function ‘__builtin___memcpy_chk’
python3.14-primer3-py-2.3.0> In function ‘strcpy’,
python3.14-primer3-py-2.3.0>     inlined from ‘safe_malloc’ at primer3/src/libprimer3/thalflex.c:916:5,
python3.14-primer3-py-2.3.0>     inlined from ‘calc_bulge_internal’ at primer3/src/libprimer3/thalflex.c:1946:18,
python3.14-primer3-py-2.3.0>     inlined from ‘fillMatrix.constprop’ at primer3/src/libprimer3/thalflex.c:1721:17:
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: warning: argument 1 null where non-null expected because argument 3 is nonzero [-Wnonnull]
python3.14-primer3-py-2.3.0>    81 |   return __builtin___strcpy_chk (__dest, __src, __glibc_objsize (__dest));
python3.14-primer3-py-2.3.0>       |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
python3.14-primer3-py-2.3.0> /nix/store/29isvm6vfq10c528i31igdiy3fnvjcm3-glibc-2.42-67-dev/include/bits/string_fortified.h:81:10: note: in a call to built-in function ‘__builtin___memcpy_chk’
python3.14-primer3-py-2.3.0> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -Iprimer3 -I/build/source/primer3/src -I/build/source/primer3/src/libprimer3 -I/build/source/primer3/src/libprimer3/klib -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c primer3/thermoanalysis.c -o build/temp.linux-x86_64-cpython-314/primer3/thermoanalysis.o -Wno-error=declaration-after-statement -Wno-unused-function
python3.14-primer3-py-2.3.0> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/dpal.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/libprimer3flex.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/masker.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/oligotm.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/p3_seq_lib.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/read_boulder.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/thal_parameters.o build/temp.linux-x86_64-cpython-314/primer3/src/libprimer3/thalflex.o build/temp.linux-x86_64-cpython-314/primer3/thermoanalysis.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/primer3/thermoanalysis.cpython-314-x86_64-linux-gnu.so
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/p3helpers.cpython-314-x86_64-linux-gnu.so -> primer3
python3.14-primer3-py-2.3.0> copying build/lib.linux-x86_64-cpython-314/primer3/thermoanalysis.cpython-314-x86_64-linux-gnu.so -> primer3
python3.14-primer3-py-2.3.0> pytest flags: -m pytest tests
python3.14-primer3-py-2.3.0> ============================= test session starts ==============================
python3.14-primer3-py-2.3.0> platform linux -- Python 3.14.6, pytest-9.1.1, pluggy-1.6.0
python3.14-primer3-py-2.3.0> rootdir: /build/source
python3.14-primer3-py-2.3.0> configfile: pyproject.toml
python3.14-primer3-py-2.3.0> plugins: typeguard-4.5.2
python3.14-primer3-py-2.3.0> collected 36 items                                                             
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> tests/test_argdefaults.py ...                                            [  8%]
python3.14-primer3-py-2.3.0> tests/test_ntthal_io.py .                                                [ 11%]
python3.14-primer3-py-2.3.0> tests/test_p3helpers.py ...                                              [ 19%]
python3.14-primer3-py-2.3.0> tests/test_primerdesign.py .....                                         [ 33%]
python3.14-primer3-py-2.3.0> tests/test_sequences.py ..........                                       [ 61%]
python3.14-primer3-py-2.3.0> tests/test_str_rep_ifc_compat.py ..                                      [ 66%]
python3.14-primer3-py-2.3.0> tests/test_thermoanalysis.py ..........                                  [ 94%]
python3.14-primer3-py-2.3.0> tests/test_threadsafe.py ..                                              [100%]
python3.14-primer3-py-2.3.0> 
python3.14-primer3-py-2.3.0> ============================= 36 passed in 18.79s ==============================
python3.14-primer3-py-2.3.0> Finished executing pytestCheckPhase
python3.14-primer3-py-2.3.0> pytestCheckPhase completed in 48 seconds
python3.14-primer3-py-2.3.0> Running phase: pytestcachePhase
python3.14-primer3-py-2.3.0> Running phase: pytestRemoveBytecodePhase

post-build step Route build to niks3: ok
Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org
time=2026-09-05T05:14:42.707+09:00 level=INFO msg="Uploading 0 paths to niks3.sjanglab.org (24 already cached)"
time=2026-09-05T05:14:43.218+09:00 level=INFO msg="Upload complete. (600ms)"