Sourcing python-remove-tests-dir-hook Sourcing python-catch-conflicts-hook.sh Sourcing python-remove-bin-bytecode-hook.sh Sourcing pypa-build-hook Using pypaBuildPhase Sourcing python-runtime-deps-check-hook Using pythonRuntimeDepsCheckHook Sourcing pypa-install-hook Using pypaInstallPhase Sourcing python-imports-check-hook.sh Using pythonImportsCheckPhase Sourcing python-metadata-check-hook.sh Using pythonMetadataCheckPhase Sourcing python-namespaces-hook Sourcing python-catch-conflicts-hook.sh Sourcing pytest-check-hook Using pytestCheckPhase Using checkPhaseThreadLimitHook Running phase: unpackPhase unpacking source archive /nix/store/ki24qyjvmzxraphqlbnh2hvfgx8d55w0-source source root is source setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/test_samples/test_with_a_single_feature_ie_no_features_list.dna" Running phase: patchPhase Running phase: updateAutotoolsGnuConfigScriptsPhase Running phase: configurePhase no configure script, doing nothing Running phase: buildPhase Executing pypaBuildPhase Creating a wheel... pypa build flags: --no-isolation --outdir dist/ --wheel * Getting build dependencies for wheel... running egg_info creating snapgene_reader.egg-info writing snapgene_reader.egg-info/PKG-INFO writing dependency_links to snapgene_reader.egg-info/dependency_links.txt writing requirements to snapgene_reader.egg-info/requires.txt writing top-level names to snapgene_reader.egg-info/top_level.txt writing manifest file 'snapgene_reader.egg-info/SOURCES.txt' reading manifest file 'snapgene_reader.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'snapgene_reader.egg-info/SOURCES.txt' * Building wheel... running bdist_wheel running build running build_py creating build/lib/snapgene_reader copying snapgene_reader/__init__.py -> build/lib/snapgene_reader copying snapgene_reader/snapgene_reader.py -> build/lib/snapgene_reader copying snapgene_reader/version.py -> build/lib/snapgene_reader running egg_info writing snapgene_reader.egg-info/PKG-INFO writing dependency_links to snapgene_reader.egg-info/dependency_links.txt writing requirements to snapgene_reader.egg-info/requires.txt writing top-level names to snapgene_reader.egg-info/top_level.txt reading manifest file 'snapgene_reader.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'snapgene_reader.egg-info/SOURCES.txt' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/snapgene_reader copying build/lib/snapgene_reader/__init__.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader copying build/lib/snapgene_reader/snapgene_reader.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader copying build/lib/snapgene_reader/version.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader running install_egg_info Copying snapgene_reader.egg-info to build/bdist.linux-x86_64/wheel/./snapgene_reader-0.1.23-py3.14.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/snapgene_reader-0.1.23.dist-info/WHEEL creating '/build/source/dist/.tmp-jbbmi090/snapgene_reader-0.1.23-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'snapgene_reader/__init__.py' adding 'snapgene_reader/snapgene_reader.py' adding 'snapgene_reader/version.py' adding 'snapgene_reader-0.1.23.dist-info/licenses/LICENSE' adding 'snapgene_reader-0.1.23.dist-info/METADATA' adding 'snapgene_reader-0.1.23.dist-info/WHEEL' adding 'snapgene_reader-0.1.23.dist-info/top_level.txt' adding 'snapgene_reader-0.1.23.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built snapgene_reader-0.1.23-py3-none-any.whl Finished creating a wheel... Finished executing pypaBuildPhase Running phase: pythonRuntimeDepsCheckHook Executing pythonRuntimeDepsCheck Checking runtime dependencies for snapgene_reader-0.1.23-py3-none-any.whl Finished executing pythonRuntimeDepsCheck Running phase: installPhase Executing pypaInstallPhase Successfully installed snapgene_reader-0.1.23-py3-none-any.whl Finished executing pypaInstallPhase Running phase: pythonOutputDistPhase Executing pythonOutputDistPhase Finished executing pythonOutputDistPhase Running phase: fixupPhase shrinking RPATHs of ELF executables and libraries in /nix/store/nfpvfccjwb7i1pi6qgwdkx8sdysdb6ks-python3.14-snapgene-reader-0.1.23 checking for references to /build/ in /nix/store/nfpvfccjwb7i1pi6qgwdkx8sdysdb6ks-python3.14-snapgene-reader-0.1.23... patching script interpreter paths in /nix/store/nfpvfccjwb7i1pi6qgwdkx8sdysdb6ks-python3.14-snapgene-reader-0.1.23 stripping (with command strip and flags -S -p) in /nix/store/nfpvfccjwb7i1pi6qgwdkx8sdysdb6ks-python3.14-snapgene-reader-0.1.23/lib shrinking RPATHs of ELF executables and libraries in /nix/store/h1lzmq7v5ai15ang2lam7f48pva7rihi-python3.14-snapgene-reader-0.1.23-dist checking for references to /build/ in /nix/store/h1lzmq7v5ai15ang2lam7f48pva7rihi-python3.14-snapgene-reader-0.1.23-dist... patching script interpreter paths in /nix/store/h1lzmq7v5ai15ang2lam7f48pva7rihi-python3.14-snapgene-reader-0.1.23-dist Executing pythonRemoveTestsDir Finished executing pythonRemoveTestsDir Running phase: installCheckPhase setting known thread variables to default: 1 OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 no Makefile or custom installCheckPhase, doing nothing Running phase: pythonCatchConflictsPhase Running phase: pythonRemoveBinBytecodePhase Running phase: pythonImportsCheckPhase Executing pythonImportsCheckPhase Check whether the following modules can be imported: snapgene_reader Running phase: pythonMetadataCheckPhase Executing pythonMetadataCheckPhase Running phase: pytestCheckPhase Executing pytestCheckPhase setting known thread variables to default: 1 OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 pytest flags: -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.14.6, pytest-9.1.1, pluggy-1.6.0 rootdir: /build/source configfile: pyproject.toml collected 2 items tests/test_general.py .. [100%] =============================== warnings summary =============================== tests/test_general.py::test_snapgene_file_to_gbk /nix/store/vkl2n12yiajybx4d2xvybqv0i07ncbc4-python3.14-biopython-1.86/lib/python3.14/site-packages/Bio/GenBank/__init__.py:724: BiopythonParserWarning: negative starting position in feature location '0..4'; setting feature location to None. warnings.warn( tests/test_general.py::test_snapgene_file_to_gbk /nix/store/vkl2n12yiajybx4d2xvybqv0i07ncbc4-python3.14-biopython-1.86/lib/python3.14/site-packages/Bio/GenBank/__init__.py:724: BiopythonParserWarning: negative starting position in feature location '0..225'; setting feature location to None. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================== 2 passed, 2 warnings in 0.13s ========================= Finished executing pytestCheckPhase Running phase: pytestcachePhase Running phase: pytestRemoveBytecodePhase