these 2 derivations will be built: /nix/store/7flpv68nzglw793vclgkfbkm06cr5hgi-source.drv /nix/store/43m1gcp16y69smr99l1pv6raf8pbysg3-python3.14-snapgene-reader-0.1.23.drv these 25 paths will be fetched (1.6 MiB download, 42.5 MiB unpacked): /nix/store/g8ivybzv5vqivnqivgl51kq2r08k60mf-ensure-newer-sources-hook /nix/store/6km9d4mw66vcs3b5ahd16mv0yhvkagml-pypa-build-hook.sh /nix/store/jvhnbby29xq9504w7n9x92fbxz3cb5cl-pypa-install-hook /nix/store/9593xkp0zsybpzd4njx00h3bj8g19sa6-pytest-check-hook /nix/store/38sy7kvsxr4ihq055ifr4mpg22h3x1rg-python-catch-conflicts-hook /nix/store/b9i265hz56bpkv6m3s3mrbqi4pbczckr-python-imports-check-hook.sh /nix/store/3g5mvlnzh2zl1xhk1lkcrlv0cp57zy3h-python-metadata-check-hook.sh /nix/store/8lkyxzljzgmh17pvj5q1b0m3ip7kyxza-python-namespaces-hook.sh /nix/store/9bmzy4cmbd1pzc4avqwra98j3n222akb-python-output-dist-hook /nix/store/yd03vybx1z5cjyhf3mcq46kwifrmr63h-python-remove-bin-bytecode-hook /nix/store/rvv5pgs332i82z33vsv5w0rr1mc7h7nh-python-remove-tests-dir-hook /nix/store/2178ns4chvd31jdkd0g3y4cqvbjqj7hx-python-runtime-deps-check-hook.sh /nix/store/w2mvr8457dlji92flvc7kipgf6pn37s7-python3-3.14.7-env /nix/store/wifx7r1y643vbrml8sgzv4gc0a1zmhch-python3.14-biopython-1.86 /nix/store/n2nmcli8bb7yzpa3lknf02an5vz3mjz4-python3.14-build-1.5.1 /nix/store/ipcj4z35z7v6m0jmhqdp1zxh7x4lmb6w-python3.14-html2text-2025.4.15 /nix/store/ybbyi6m6xznmq3qkb9wc9mj99zmpn5j2-python3.14-iniconfig-2.3.0 /nix/store/5ar0ic9b3jfbmg52vjf58flgkn27p3vi-python3.14-installer-1.0.1 /nix/store/42p69z2jmikj72an8i1v8alff309yddg-python3.14-pluggy-1.6.0 /nix/store/ph010v2j8jnd1gsdhppqvnn25l5zb2js-python3.14-pyproject-hooks-1.2.0 /nix/store/5srgg0xydsxbp6bkgnkqarw4i8bh40c8-python3.14-pytest-9.1.1 /nix/store/58c366zzhg1mpah9zm8khpqy0cl3c4k8-python3.14-setuptools-83.0.0 /nix/store/31wv1cbxzxf15w5y9rr1fhl7hx6q55np-python3.14-wheel-0.47.0 /nix/store/q5jc7fjv9yfczp9657dlq92i1a219zi6-python3.14-xmltodict-1.0.4 /nix/store/n37qbjpp4rrwcz42yqbgpfgrr7l4wn5x-wrap-python-hook building '/nix/store/xbbynn28whlckbnslr1qh0cnbjb8yhcf-source.drv' source> structuredAttrs is enabled source> source> trying https://github.com/Edinburgh-Genome-Foundry/SnapGeneReader/archive/refs/tags/v0.1.23.tar.gz source> % Total % Received % Xferd Average Speed Time Time Time Current source> Dload Upload Total Spent Left Speed source> source> 0 0 0 0 0 0 0 0 0 source> 0 0 0 0 0 0 0 0 0 source> 0 0 0 0 0 0 0 0 0 source> source> 0 0 0 0 0 0 0 0 0 source> 100 625.6k 0 625.6k 0 0 984.9k 0 0 source> 100 625.6k 0 625.6k 0 0 984.8k 0 0 source> 100 625.6k 0 625.6k 0 0 984.7k 0 0 source> unpacking source archive /build/download.tar.gz building '/nix/store/43m1gcp16y69smr99l1pv6raf8pbysg3-python3.14-snapgene-reader-0.1.23.drv' python3.14-snapgene-reader-0.1.23> Sourcing python-remove-tests-dir-hook python3.14-snapgene-reader-0.1.23> Sourcing python-catch-conflicts-hook.sh python3.14-snapgene-reader-0.1.23> Sourcing python-remove-bin-bytecode-hook.sh python3.14-snapgene-reader-0.1.23> Sourcing pypa-build-hook python3.14-snapgene-reader-0.1.23> Using pypaBuildPhase python3.14-snapgene-reader-0.1.23> Sourcing python-runtime-deps-check-hook python3.14-snapgene-reader-0.1.23> Using pythonRuntimeDepsCheckHook python3.14-snapgene-reader-0.1.23> Sourcing pypa-install-hook python3.14-snapgene-reader-0.1.23> Using pypaInstallPhase python3.14-snapgene-reader-0.1.23> Sourcing python-imports-check-hook.sh python3.14-snapgene-reader-0.1.23> Using pythonImportsCheckPhase python3.14-snapgene-reader-0.1.23> Sourcing python-metadata-check-hook.sh python3.14-snapgene-reader-0.1.23> Using pythonMetadataCheckPhase python3.14-snapgene-reader-0.1.23> Sourcing python-namespaces-hook python3.14-snapgene-reader-0.1.23> Sourcing python-catch-conflicts-hook.sh python3.14-snapgene-reader-0.1.23> Sourcing pytest-check-hook python3.14-snapgene-reader-0.1.23> Using pytestCheckPhase python3.14-snapgene-reader-0.1.23> Using checkPhaseThreadLimitHook python3.14-snapgene-reader-0.1.23> Running phase: unpackPhase python3.14-snapgene-reader-0.1.23> unpacking source archive /nix/store/ki24qyjvmzxraphqlbnh2hvfgx8d55w0-source python3.14-snapgene-reader-0.1.23> source root is source python3.14-snapgene-reader-0.1.23> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/test_samples/test_with_a_single_feature_ie_no_features_list.dna" python3.14-snapgene-reader-0.1.23> Running phase: patchPhase python3.14-snapgene-reader-0.1.23> Running phase: updateAutotoolsGnuConfigScriptsPhase python3.14-snapgene-reader-0.1.23> Running phase: configurePhase python3.14-snapgene-reader-0.1.23> no configure script, doing nothing python3.14-snapgene-reader-0.1.23> Running phase: buildPhase python3.14-snapgene-reader-0.1.23> Executing pypaBuildPhase python3.14-snapgene-reader-0.1.23> Creating a wheel... python3.14-snapgene-reader-0.1.23> pypa build flags: --no-isolation --outdir dist/ --wheel python3.14-snapgene-reader-0.1.23> * Getting build dependencies for wheel... python3.14-snapgene-reader-0.1.23> running egg_info python3.14-snapgene-reader-0.1.23> creating snapgene_reader.egg-info python3.14-snapgene-reader-0.1.23> writing snapgene_reader.egg-info/PKG-INFO python3.14-snapgene-reader-0.1.23> writing dependency_links to snapgene_reader.egg-info/dependency_links.txt python3.14-snapgene-reader-0.1.23> writing requirements to snapgene_reader.egg-info/requires.txt python3.14-snapgene-reader-0.1.23> writing top-level names to snapgene_reader.egg-info/top_level.txt python3.14-snapgene-reader-0.1.23> writing manifest file 'snapgene_reader.egg-info/SOURCES.txt' python3.14-snapgene-reader-0.1.23> reading manifest file 'snapgene_reader.egg-info/SOURCES.txt' python3.14-snapgene-reader-0.1.23> adding license file 'LICENSE' python3.14-snapgene-reader-0.1.23> writing manifest file 'snapgene_reader.egg-info/SOURCES.txt' python3.14-snapgene-reader-0.1.23> * Building wheel... python3.14-snapgene-reader-0.1.23> running bdist_wheel python3.14-snapgene-reader-0.1.23> running build python3.14-snapgene-reader-0.1.23> running build_py python3.14-snapgene-reader-0.1.23> creating build/lib/snapgene_reader python3.14-snapgene-reader-0.1.23> copying snapgene_reader/__init__.py -> build/lib/snapgene_reader python3.14-snapgene-reader-0.1.23> copying snapgene_reader/snapgene_reader.py -> build/lib/snapgene_reader python3.14-snapgene-reader-0.1.23> copying snapgene_reader/version.py -> build/lib/snapgene_reader python3.14-snapgene-reader-0.1.23> running egg_info python3.14-snapgene-reader-0.1.23> writing snapgene_reader.egg-info/PKG-INFO python3.14-snapgene-reader-0.1.23> writing dependency_links to snapgene_reader.egg-info/dependency_links.txt python3.14-snapgene-reader-0.1.23> writing requirements to snapgene_reader.egg-info/requires.txt python3.14-snapgene-reader-0.1.23> writing top-level names to snapgene_reader.egg-info/top_level.txt python3.14-snapgene-reader-0.1.23> reading manifest file 'snapgene_reader.egg-info/SOURCES.txt' python3.14-snapgene-reader-0.1.23> adding license file 'LICENSE' python3.14-snapgene-reader-0.1.23> writing manifest file 'snapgene_reader.egg-info/SOURCES.txt' python3.14-snapgene-reader-0.1.23> installing to build/bdist.linux-x86_64/wheel python3.14-snapgene-reader-0.1.23> running install python3.14-snapgene-reader-0.1.23> running install_lib python3.14-snapgene-reader-0.1.23> creating build/bdist.linux-x86_64/wheel python3.14-snapgene-reader-0.1.23> creating build/bdist.linux-x86_64/wheel/snapgene_reader python3.14-snapgene-reader-0.1.23> copying build/lib/snapgene_reader/__init__.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader python3.14-snapgene-reader-0.1.23> copying build/lib/snapgene_reader/snapgene_reader.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader python3.14-snapgene-reader-0.1.23> copying build/lib/snapgene_reader/version.py -> build/bdist.linux-x86_64/wheel/./snapgene_reader python3.14-snapgene-reader-0.1.23> running install_egg_info python3.14-snapgene-reader-0.1.23> Copying snapgene_reader.egg-info to build/bdist.linux-x86_64/wheel/./snapgene_reader-0.1.23-py3.14.egg-info python3.14-snapgene-reader-0.1.23> running install_scripts python3.14-snapgene-reader-0.1.23> creating build/bdist.linux-x86_64/wheel/snapgene_reader-0.1.23.dist-info/WHEEL python3.14-snapgene-reader-0.1.23> creating '/build/source/dist/.tmp-rfdai95l/snapgene_reader-0.1.23-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader/__init__.py' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader/snapgene_reader.py' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader/version.py' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/licenses/LICENSE' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/METADATA' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/WHEEL' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/top_level.txt' python3.14-snapgene-reader-0.1.23> adding 'snapgene_reader-0.1.23.dist-info/RECORD' python3.14-snapgene-reader-0.1.23> removing build/bdist.linux-x86_64/wheel python3.14-snapgene-reader-0.1.23> Successfully built snapgene_reader-0.1.23-py3-none-any.whl python3.14-snapgene-reader-0.1.23> Finished creating a wheel... python3.14-snapgene-reader-0.1.23> Finished executing pypaBuildPhase python3.14-snapgene-reader-0.1.23> Running phase: pythonRuntimeDepsCheckHook python3.14-snapgene-reader-0.1.23> Executing pythonRuntimeDepsCheck python3.14-snapgene-reader-0.1.23> Checking runtime dependencies for snapgene_reader-0.1.23-py3-none-any.whl python3.14-snapgene-reader-0.1.23> Finished executing pythonRuntimeDepsCheck python3.14-snapgene-reader-0.1.23> Running phase: installPhase python3.14-snapgene-reader-0.1.23> Executing pypaInstallPhase python3.14-snapgene-reader-0.1.23> Successfully installed snapgene_reader-0.1.23-py3-none-any.whl python3.14-snapgene-reader-0.1.23> Finished executing pypaInstallPhase python3.14-snapgene-reader-0.1.23> Running phase: pythonOutputDistPhase python3.14-snapgene-reader-0.1.23> Executing pythonOutputDistPhase python3.14-snapgene-reader-0.1.23> Finished executing pythonOutputDistPhase python3.14-snapgene-reader-0.1.23> Running phase: fixupPhase python3.14-snapgene-reader-0.1.23> shrinking RPATHs of ELF executables and libraries in /nix/store/gc3iwbi9lkn3q882fh76qkw2w9x8zr2n-python3.14-snapgene-reader-0.1.23 python3.14-snapgene-reader-0.1.23> checking for references to /build/ in /nix/store/gc3iwbi9lkn3q882fh76qkw2w9x8zr2n-python3.14-snapgene-reader-0.1.23... python3.14-snapgene-reader-0.1.23> patching script interpreter paths in /nix/store/gc3iwbi9lkn3q882fh76qkw2w9x8zr2n-python3.14-snapgene-reader-0.1.23 python3.14-snapgene-reader-0.1.23> stripping (with command strip and flags -S -p) in /nix/store/gc3iwbi9lkn3q882fh76qkw2w9x8zr2n-python3.14-snapgene-reader-0.1.23/lib python3.14-snapgene-reader-0.1.23> shrinking RPATHs of ELF executables and libraries in /nix/store/8jn6ydxwdz9ik4iagq8p62n2fhhlp0vw-python3.14-snapgene-reader-0.1.23-dist python3.14-snapgene-reader-0.1.23> checking for references to /build/ in /nix/store/8jn6ydxwdz9ik4iagq8p62n2fhhlp0vw-python3.14-snapgene-reader-0.1.23-dist... python3.14-snapgene-reader-0.1.23> patching script interpreter paths in /nix/store/8jn6ydxwdz9ik4iagq8p62n2fhhlp0vw-python3.14-snapgene-reader-0.1.23-dist python3.14-snapgene-reader-0.1.23> Executing pythonRemoveTestsDir python3.14-snapgene-reader-0.1.23> Finished executing pythonRemoveTestsDir python3.14-snapgene-reader-0.1.23> Running phase: installCheckPhase python3.14-snapgene-reader-0.1.23> setting known thread variables to default: 1 python3.14-snapgene-reader-0.1.23> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 python3.14-snapgene-reader-0.1.23> no Makefile or custom installCheckPhase, doing nothing python3.14-snapgene-reader-0.1.23> Running phase: pythonCatchConflictsPhase python3.14-snapgene-reader-0.1.23> Running phase: pythonRemoveBinBytecodePhase python3.14-snapgene-reader-0.1.23> Running phase: pythonImportsCheckPhase python3.14-snapgene-reader-0.1.23> Executing pythonImportsCheckPhase python3.14-snapgene-reader-0.1.23> Check whether the following modules can be imported: snapgene_reader python3.14-snapgene-reader-0.1.23> Running phase: pythonMetadataCheckPhase python3.14-snapgene-reader-0.1.23> Executing pythonMetadataCheckPhase python3.14-snapgene-reader-0.1.23> Running phase: pytestCheckPhase python3.14-snapgene-reader-0.1.23> Executing pytestCheckPhase python3.14-snapgene-reader-0.1.23> setting known thread variables to default: 1 python3.14-snapgene-reader-0.1.23> OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 BLIS_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMBA_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 python3.14-snapgene-reader-0.1.23> pytest flags: -m pytest tests python3.14-snapgene-reader-0.1.23> ============================= test session starts ============================== python3.14-snapgene-reader-0.1.23> platform linux -- Python 3.14.7, pytest-9.1.1, pluggy-1.6.0 python3.14-snapgene-reader-0.1.23> rootdir: /build/source python3.14-snapgene-reader-0.1.23> configfile: pyproject.toml python3.14-snapgene-reader-0.1.23> collected 2 items python3.14-snapgene-reader-0.1.23> python3.14-snapgene-reader-0.1.23> tests/test_general.py .. [100%] python3.14-snapgene-reader-0.1.23> python3.14-snapgene-reader-0.1.23> =============================== warnings summary =============================== python3.14-snapgene-reader-0.1.23> tests/test_general.py::test_snapgene_file_to_gbk python3.14-snapgene-reader-0.1.23> /nix/store/wifx7r1y643vbrml8sgzv4gc0a1zmhch-python3.14-biopython-1.86/lib/python3.14/site-packages/Bio/GenBank/__init__.py:724: BiopythonParserWarning: negative starting position in feature location '0..4'; setting feature location to None. python3.14-snapgene-reader-0.1.23> warnings.warn( python3.14-snapgene-reader-0.1.23> python3.14-snapgene-reader-0.1.23> tests/test_general.py::test_snapgene_file_to_gbk python3.14-snapgene-reader-0.1.23> /nix/store/wifx7r1y643vbrml8sgzv4gc0a1zmhch-python3.14-biopython-1.86/lib/python3.14/site-packages/Bio/GenBank/__init__.py:724: BiopythonParserWarning: negative starting position in feature location '0..225'; setting feature location to None. python3.14-snapgene-reader-0.1.23> warnings.warn( python3.14-snapgene-reader-0.1.23> python3.14-snapgene-reader-0.1.23> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html python3.14-snapgene-reader-0.1.23> ======================== 2 passed, 2 warnings in 0.15s ========================= python3.14-snapgene-reader-0.1.23> Finished executing pytestCheckPhase python3.14-snapgene-reader-0.1.23> Running phase: pytestcachePhase python3.14-snapgene-reader-0.1.23> Running phase: pytestRemoveBytecodePhase post-build step Route build to niks3: ok Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org time=2026-08-29T21:13:46.004+09:00 level=INFO msg="Uploading 0 paths to niks3.sjanglab.org (40 already cached)" time=2026-08-29T21:13:46.982+09:00 level=INFO msg="Upload complete. (1.1s)"