these 2 derivations will be built:
  /nix/store/wi6v4aysc0309vji3hchbh14gk5xcy1i-pydna-5.5.16.tar.gz.drv
  /nix/store/pnfs2c96sk0w3sfda30vxpxwjwl8khjd-python3.14-pydna-5.5.16.drv
these 33 paths will be fetched (1.5 MiB download, 70.0 MiB unpacked):
  /nix/store/g8ivybzv5vqivnqivgl51kq2r08k60mf-ensure-newer-sources-hook
  /nix/store/6km9d4mw66vcs3b5ahd16mv0yhvkagml-pypa-build-hook.sh
  /nix/store/jvhnbby29xq9504w7n9x92fbxz3cb5cl-pypa-install-hook
  /nix/store/38sy7kvsxr4ihq055ifr4mpg22h3x1rg-python-catch-conflicts-hook
  /nix/store/b9i265hz56bpkv6m3s3mrbqi4pbczckr-python-imports-check-hook.sh
  /nix/store/3g5mvlnzh2zl1xhk1lkcrlv0cp57zy3h-python-metadata-check-hook.sh
  /nix/store/8lkyxzljzgmh17pvj5q1b0m3ip7kyxza-python-namespaces-hook.sh
  /nix/store/9bmzy4cmbd1pzc4avqwra98j3n222akb-python-output-dist-hook
  /nix/store/9sxvpslwzibn2akk2xdx0h6qfbaawzhk-python-relax-deps-hook
  /nix/store/yd03vybx1z5cjyhf3mcq46kwifrmr63h-python-remove-bin-bytecode-hook
  /nix/store/rvv5pgs332i82z33vsv5w0rr1mc7h7nh-python-remove-tests-dir-hook
  /nix/store/2178ns4chvd31jdkd0g3y4cqvbjqj7hx-python-runtime-deps-check-hook.sh
  /nix/store/w2mvr8457dlji92flvc7kipgf6pn37s7-python3-3.14.7-env
  /nix/store/bjcwwl0cwzi0yrannnq3mpcbmzigpqbl-python3.14-appdirs-1.4.4
  /nix/store/ww0zfqcdlhknwpwfddbalk77s5dkm8z8-python3.14-biopython-1.87
  /nix/store/n2nmcli8bb7yzpa3lknf02an5vz3mjz4-python3.14-build-1.5.1
  /nix/store/ibxwilcp8nafsabz3wscqrv8dy0a4swk-python3.14-cython-3.2.5
  /nix/store/60cl9jrgi3h3ff6sac981jw4xf03l1r2-python3.14-dunamai-1.25.0
  /nix/store/5ar0ic9b3jfbmg52vjf58flgkn27p3vi-python3.14-installer-1.0.1
  /nix/store/sqi3hac300hyjxvjdn9sfilh4cxfkmin-python3.14-opencloning-linkml-1.0.0
  /nix/store/gxl35ncsm2rcqvy4x1gqq2cxjx6z6jf1-python3.14-poetry-core-2.4.1
  /nix/store/26f6k35qrh96h5qfsm83yw4q9mc1y51j-python3.14-poetry-dynamic-versioning-1.9.1
  /nix/store/r51jw17xhnnqhs585a97x0kr55h5j2fc-python3.14-prettytable-3.18.0
  /nix/store/1zj6a8iijx0sch41bj4m8nzph54pg19q-python3.14-pydivsufsort-0.0.20
  /nix/store/1klgj2gs9my434c0mlhhpzfyqp5giiyn-python3.14-pyfiglet-1.0.4
  /nix/store/ph010v2j8jnd1gsdhppqvnn25l5zb2js-python3.14-pyproject-hooks-1.2.0
  /nix/store/z2x0kiv01n48yhrg9q1qvpdv8b4g9lyh-python3.14-seguid-0.2.1
  /nix/store/3vsq12jbhpa68zp2i4jixkyr5qiag394-python3.14-sgffp-0.22.1
  /nix/store/4dhn11plvppy3x06pks9wpaidbwd5x64-python3.14-tomlkit-0.15.0
  /nix/store/5jx1smvr9j6civ2a98kif62fj0vc272n-python3.14-wcwidth-0.8.2
  /nix/store/31wv1cbxzxf15w5y9rr1fhl7hx6q55np-python3.14-wheel-0.47.0
  /nix/store/q5jc7fjv9yfczp9657dlq92i1a219zi6-python3.14-xmltodict-1.0.4
  /nix/store/n37qbjpp4rrwcz42yqbgpfgrr7l4wn5x-wrap-python-hook
building '/nix/store/hqssivcsyk621i5nyc5lkrrcmq4qijy4-pydna-5.5.16.tar.gz.drv'
pydna-5.5.16.tar.gz> structuredAttrs is enabled
pydna-5.5.16.tar.gz> 
pydna-5.5.16.tar.gz> trying https://files.pythonhosted.org/packages/source/p/pydna/pydna-5.5.16.tar.gz
pydna-5.5.16.tar.gz>   % Total    % Received % Xferd  Average Speed  Time    Time    Time   Current
pydna-5.5.16.tar.gz>                                  Dload  Upload  Total   Spent   Left   Speed
pydna-5.5.16.tar.gz> 
pydna-5.5.16.tar.gz>   0      0   0      0   0      0      0      0                              0
pydna-5.5.16.tar.gz>   0      0   0      0   0      0      0      0                              0
pydna-5.5.16.tar.gz>   0      0   0      0   0      0      0      0                              0
pydna-5.5.16.tar.gz> 
pydna-5.5.16.tar.gz>   0      0   0      0   0      0      0      0                              0
pydna-5.5.16.tar.gz> 100 185.3k 100 185.3k   0      0  3.02M      0                              0
pydna-5.5.16.tar.gz> 100 185.3k 100 185.3k   0      0  3.02M      0                              0
pydna-5.5.16.tar.gz> 100 185.3k 100 185.3k   0      0  3.02M      0                              0
building '/nix/store/pnfs2c96sk0w3sfda30vxpxwjwl8khjd-python3.14-pydna-5.5.16.drv'
python3.14-pydna-5.5.16> Sourcing python-remove-tests-dir-hook
python3.14-pydna-5.5.16> Sourcing python-catch-conflicts-hook.sh
python3.14-pydna-5.5.16> Sourcing python-remove-bin-bytecode-hook.sh
python3.14-pydna-5.5.16> Sourcing pypa-build-hook
python3.14-pydna-5.5.16> Using pypaBuildPhase
python3.14-pydna-5.5.16> Sourcing python-runtime-deps-check-hook
python3.14-pydna-5.5.16> Using pythonRuntimeDepsCheckHook
python3.14-pydna-5.5.16> Sourcing pypa-install-hook
python3.14-pydna-5.5.16> Using pypaInstallPhase
python3.14-pydna-5.5.16> Sourcing python-imports-check-hook.sh
python3.14-pydna-5.5.16> Using pythonImportsCheckPhase
python3.14-pydna-5.5.16> Sourcing python-metadata-check-hook.sh
python3.14-pydna-5.5.16> Using pythonMetadataCheckPhase
python3.14-pydna-5.5.16> Sourcing python-namespaces-hook
python3.14-pydna-5.5.16> Sourcing python-catch-conflicts-hook.sh
python3.14-pydna-5.5.16> Using checkPhaseThreadLimitHook
python3.14-pydna-5.5.16> Running phase: unpackPhase
python3.14-pydna-5.5.16> unpacking source archive /nix/store/rx6ia5j881xwiajjd5j0nznxsy38blqx-pydna-5.5.16.tar.gz
python3.14-pydna-5.5.16> source root is pydna-5.5.16
python3.14-pydna-5.5.16> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "pydna-5.5.16/src/pydna/utils.py"
python3.14-pydna-5.5.16> Running phase: patchPhase
python3.14-pydna-5.5.16> Running phase: updateAutotoolsGnuConfigScriptsPhase
python3.14-pydna-5.5.16> Running phase: configurePhase
python3.14-pydna-5.5.16> no configure script, doing nothing
python3.14-pydna-5.5.16> Running phase: buildPhase
python3.14-pydna-5.5.16> Executing pypaBuildPhase
python3.14-pydna-5.5.16> Setting POETRY_DYNAMIC_VERSIONING_BYPASS to 5.5.16
python3.14-pydna-5.5.16> Creating a wheel...
python3.14-pydna-5.5.16> pypa build flags: --no-isolation --outdir dist/ --wheel
python3.14-pydna-5.5.16> * Getting build dependencies for wheel...
python3.14-pydna-5.5.16> * Building wheel...
python3.14-pydna-5.5.16> Successfully built pydna-5.5.16-py3-none-any.whl
python3.14-pydna-5.5.16> Finished creating a wheel...
python3.14-pydna-5.5.16> /build/pydna-5.5.16/dist /build/pydna-5.5.16
python3.14-pydna-5.5.16> Unpacking to: unpacked/pydna-5.5.16...OK
python3.14-pydna-5.5.16> Repacking wheel as ./pydna-5.5.16-py3-none-any.whl...OK
python3.14-pydna-5.5.16> /build/pydna-5.5.16
python3.14-pydna-5.5.16> Finished executing pypaBuildPhase
python3.14-pydna-5.5.16> Running phase: pythonRuntimeDepsCheckHook
python3.14-pydna-5.5.16> Executing pythonRuntimeDepsCheck
python3.14-pydna-5.5.16> Checking runtime dependencies for pydna-5.5.16-py3-none-any.whl
python3.14-pydna-5.5.16> Finished executing pythonRuntimeDepsCheck
python3.14-pydna-5.5.16> Running phase: installPhase
python3.14-pydna-5.5.16> Executing pypaInstallPhase
python3.14-pydna-5.5.16> Successfully installed pydna-5.5.16-py3-none-any.whl
python3.14-pydna-5.5.16> Finished executing pypaInstallPhase
python3.14-pydna-5.5.16> Running phase: pythonOutputDistPhase
python3.14-pydna-5.5.16> Executing pythonOutputDistPhase
python3.14-pydna-5.5.16> Finished executing pythonOutputDistPhase
python3.14-pydna-5.5.16> Running phase: fixupPhase
python3.14-pydna-5.5.16> shrinking RPATHs of ELF executables and libraries in /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16
python3.14-pydna-5.5.16> checking for references to /build/ in /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16...
python3.14-pydna-5.5.16> patching script interpreter paths in /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16
python3.14-pydna-5.5.16> /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/amplicon.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3"
python3.14-pydna-5.5.16> /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/fakeseq.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3"
python3.14-pydna-5.5.16> /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/gel.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3"
python3.14-pydna-5.5.16> /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/ladders.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3"
python3.14-pydna-5.5.16> /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/seqrecord.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3"
python3.14-pydna-5.5.16> stripping (with command strip and flags -S -p) in /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16/lib
python3.14-pydna-5.5.16> shrinking RPATHs of ELF executables and libraries in /nix/store/jwn9qp69vg6nvm3g46mrfjb4h51qywj3-python3.14-pydna-5.5.16-dist
python3.14-pydna-5.5.16> checking for references to /build/ in /nix/store/jwn9qp69vg6nvm3g46mrfjb4h51qywj3-python3.14-pydna-5.5.16-dist...
python3.14-pydna-5.5.16> patching script interpreter paths in /nix/store/jwn9qp69vg6nvm3g46mrfjb4h51qywj3-python3.14-pydna-5.5.16-dist
python3.14-pydna-5.5.16> Executing pythonRemoveTestsDir
python3.14-pydna-5.5.16> Finished executing pythonRemoveTestsDir
python3.14-pydna-5.5.16> Running phase: pythonCatchConflictsPhase
python3.14-pydna-5.5.16> Running phase: pythonRemoveBinBytecodePhase
python3.14-pydna-5.5.16> Running phase: pythonImportsCheckPhase
python3.14-pydna-5.5.16> Executing pythonImportsCheckPhase
python3.14-pydna-5.5.16> Check whether the following modules can be imported: pydna pydna.assembly pydna.dseqrecord
python3.14-pydna-5.5.16> Running phase: pythonMetadataCheckPhase
python3.14-pydna-5.5.16> Executing pythonMetadataCheckPhase

post-build step Route build to niks3: ok
Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org
time=2026-08-29T21:13:47.426+09:00 level=INFO msg="Uploading 0 paths to niks3.sjanglab.org (55 already cached)"
time=2026-08-29T21:13:47.988+09:00 level=INFO msg="Upload complete. (663ms)"