this derivation will be built:
  /nix/store/pnfs2c96sk0w3sfda30vxpxwjwl8khjd-python3.14-pydna-5.5.16.drv
these 11 paths will be fetched (1.0 MiB download, 40.5 MiB unpacked):
  /nix/store/9sxvpslwzibn2akk2xdx0h6qfbaawzhk-python-relax-deps-hook
  /nix/store/ww0zfqcdlhknwpwfddbalk77s5dkm8z8-python3.14-biopython-1.87
  /nix/store/60cl9jrgi3h3ff6sac981jw4xf03l1r2-python3.14-dunamai-1.25.0
  /nix/store/sqi3hac300hyjxvjdn9sfilh4cxfkmin-python3.14-opencloning-linkml-1.0.0
  /nix/store/gxl35ncsm2rcqvy4x1gqq2cxjx6z6jf1-python3.14-poetry-core-2.4.1
  /nix/store/26f6k35qrh96h5qfsm83yw4q9mc1y51j-python3.14-poetry-dynamic-versioning-1.9.1
  /nix/store/r51jw17xhnnqhs585a97x0kr55h5j2fc-python3.14-prettytable-3.18.0
  /nix/store/1zj6a8iijx0sch41bj4m8nzph54pg19q-python3.14-pydivsufsort-0.0.20
  /nix/store/1klgj2gs9my434c0mlhhpzfyqp5giiyn-python3.14-pyfiglet-1.0.4
  /nix/store/z2x0kiv01n48yhrg9q1qvpdv8b4g9lyh-python3.14-seguid-0.2.1
  /nix/store/3vsq12jbhpa68zp2i4jixkyr5qiag394-python3.14-sgffp-0.22.1
building '/nix/store/pnfs2c96sk0w3sfda30vxpxwjwl8khjd-python3.14-pydna-5.5.16.drv'
python3.14-pydna-5.5.16> Sourcing python-remove-tests-dir-hook
python3.14-pydna-5.5.16> Sourcing python-catch-conflicts-hook.sh
python3.14-pydna-5.5.16> Sourcing python-remove-bin-bytecode-hook.sh
python3.14-pydna-5.5.16> Sourcing pypa-build-hook
python3.14-pydna-5.5.16> Using pypaBuildPhase
python3.14-pydna-5.5.16> Sourcing python-runtime-deps-check-hook
python3.14-pydna-5.5.16> Using pythonRuntimeDepsCheckHook
python3.14-pydna-5.5.16> Sourcing pypa-install-hook
python3.14-pydna-5.5.16> Using pypaInstallPhase
python3.14-pydna-5.5.16> Sourcing python-imports-check-hook.sh
python3.14-pydna-5.5.16> Using pythonImportsCheckPhase
python3.14-pydna-5.5.16> Sourcing python-metadata-check-hook.sh
python3.14-pydna-5.5.16> Using pythonMetadataCheckPhase
python3.14-pydna-5.5.16> Sourcing python-namespaces-hook
python3.14-pydna-5.5.16> Sourcing python-catch-conflicts-hook.sh
python3.14-pydna-5.5.16> Using checkPhaseThreadLimitHook
python3.14-pydna-5.5.16> Running phase: unpackPhase
python3.14-pydna-5.5.16> unpacking source archive /nix/store/rx6ia5j881xwiajjd5j0nznxsy38blqx-pydna-5.5.16.tar.gz
python3.14-pydna-5.5.16> source root is pydna-5.5.16
python3.14-pydna-5.5.16> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "pydna-5.5.16/src/pydna/utils.py"
python3.14-pydna-5.5.16> Running phase: patchPhase
python3.14-pydna-5.5.16> Running phase: updateAutotoolsGnuConfigScriptsPhase
python3.14-pydna-5.5.16> Running phase: configurePhase
python3.14-pydna-5.5.16> no configure script, doing nothing
python3.14-pydna-5.5.16> Running phase: buildPhase
python3.14-pydna-5.5.16> Executing pypaBuildPhase
python3.14-pydna-5.5.16> Setting POETRY_DYNAMIC_VERSIONING_BYPASS to 5.5.16
python3.14-pydna-5.5.16> Creating a wheel...
python3.14-pydna-5.5.16> pypa build flags: --no-isolation --outdir dist/ --wheel
python3.14-pydna-5.5.16> * Getting build dependencies for wheel...
python3.14-pydna-5.5.16> * Building wheel...
python3.14-pydna-5.5.16> Successfully built pydna-5.5.16-py3-none-any.whl
python3.14-pydna-5.5.16> Finished creating a wheel...
python3.14-pydna-5.5.16> /build/pydna-5.5.16/dist /build/pydna-5.5.16
python3.14-pydna-5.5.16> Unpacking to: unpacked/pydna-5.5.16...OK
python3.14-pydna-5.5.16> Repacking wheel as ./pydna-5.5.16-py3-none-any.whl...OK
python3.14-pydna-5.5.16> /build/pydna-5.5.16
python3.14-pydna-5.5.16> Finished executing pypaBuildPhase
python3.14-pydna-5.5.16> Running phase: pythonRuntimeDepsCheckHook
python3.14-pydna-5.5.16> Executing pythonRuntimeDepsCheck
python3.14-pydna-5.5.16> Checking runtime dependencies for pydna-5.5.16-py3-none-any.whl
python3.14-pydna-5.5.16> Finished executing pythonRuntimeDepsCheck
python3.14-pydna-5.5.16> Running phase: installPhase
python3.14-pydna-5.5.16> Executing pypaInstallPhase
python3.14-pydna-5.5.16> Successfully installed pydna-5.5.16-py3-none-any.whl
python3.14-pydna-5.5.16> Finished executing pypaInstallPhase
python3.14-pydna-5.5.16> Running phase: pythonOutputDistPhase
python3.14-pydna-5.5.16> Executing pythonOutputDistPhase
python3.14-pydna-5.5.16> Finished executing pythonOutputDistPhase
python3.14-pydna-5.5.16> Running phase: fixupPhase
python3.14-pydna-5.5.16> shrinking RPATHs of ELF executables and libraries in /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16
python3.14-pydna-5.5.16> checking for references to /build/ in /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16...
python3.14-pydna-5.5.16> patching script interpreter paths in /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16
python3.14-pydna-5.5.16> /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/amplicon.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3"
python3.14-pydna-5.5.16> /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/fakeseq.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3"
python3.14-pydna-5.5.16> /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/gel.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3"
python3.14-pydna-5.5.16> /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/ladders.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3"
python3.14-pydna-5.5.16> /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16/lib/python3.14/site-packages/pydna/seqrecord.py: interpreter directive changed from "#!/usr/bin/env python3" to "/nix/store/3n4qphl9s728sz8frmpqqrv9b1m87g68-python3-3.14.7/bin/python3"
python3.14-pydna-5.5.16> stripping (with command strip and flags -S -p) in /nix/store/c591lbqf89lkjxcpc82f188nswhyw568-python3.14-pydna-5.5.16/lib
python3.14-pydna-5.5.16> shrinking RPATHs of ELF executables and libraries in /nix/store/jwn9qp69vg6nvm3g46mrfjb4h51qywj3-python3.14-pydna-5.5.16-dist
python3.14-pydna-5.5.16> checking for references to /build/ in /nix/store/jwn9qp69vg6nvm3g46mrfjb4h51qywj3-python3.14-pydna-5.5.16-dist...
python3.14-pydna-5.5.16> patching script interpreter paths in /nix/store/jwn9qp69vg6nvm3g46mrfjb4h51qywj3-python3.14-pydna-5.5.16-dist
python3.14-pydna-5.5.16> Executing pythonRemoveTestsDir
python3.14-pydna-5.5.16> Finished executing pythonRemoveTestsDir
python3.14-pydna-5.5.16> Running phase: pythonCatchConflictsPhase
python3.14-pydna-5.5.16> Running phase: pythonRemoveBinBytecodePhase
python3.14-pydna-5.5.16> Running phase: pythonImportsCheckPhase
python3.14-pydna-5.5.16> Executing pythonImportsCheckPhase
python3.14-pydna-5.5.16> Check whether the following modules can be imported: pydna pydna.assembly pydna.dseqrecord
python3.14-pydna-5.5.16> Running phase: pythonMetadataCheckPhase
python3.14-pydna-5.5.16> Executing pythonMetadataCheckPhase

post-build step Route build to niks3: ok
Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org
time=2026-08-22T21:14:12.693+09:00 level=INFO msg="Uploading 0 paths to niks3.sjanglab.org (55 already cached)"
time=2026-08-22T21:14:14.199+09:00 level=INFO msg="Upload complete. (1.612s)"