Sourcing python-remove-tests-dir-hook Sourcing python-catch-conflicts-hook.sh Sourcing python-remove-bin-bytecode-hook.sh Sourcing setuptools-build-hook Using setuptoolsBuildPhase Sourcing pypa-install-hook Using pypaInstallPhase Sourcing python-imports-check-hook.sh Using pythonImportsCheckPhase Sourcing python-namespaces-hook Sourcing python-catch-conflicts-hook.sh Using checkPhaseThreadLimitHook Running phase: unpackPhase unpacking source archive /nix/store/q09qvqkfh6jyz1mzk9r3f9p2lsn602z8-genome_collector-0.1.6.tar.gz source root is genome_collector-0.1.6 setting SOURCE_DATE_EPOCH to timestamp 1573517774 of file "genome_collector-0.1.6/setup.cfg" Running phase: patchPhase Running phase: updateAutotoolsGnuConfigScriptsPhase Running phase: configurePhase no configure script, doing nothing Running phase: buildPhase Executing setuptoolsBuildPhase setup.py build flags: '' running bdist_wheel running build running build_py creating build/lib/genome_collector copying genome_collector/GenomeCollection.py -> build/lib/genome_collector copying genome_collector/__main__.py -> build/lib/genome_collector copying genome_collector/__init__.py -> build/lib/genome_collector copying genome_collector/version.py -> build/lib/genome_collector creating build/lib/genome_collector/mixins copying genome_collector/mixins/BowtieMixin.py -> build/lib/genome_collector/mixins copying genome_collector/mixins/NCBIMixin.py -> build/lib/genome_collector/mixins copying genome_collector/mixins/FileManagerMixin.py -> build/lib/genome_collector/mixins copying genome_collector/mixins/BlastMixin.py -> build/lib/genome_collector/mixins copying genome_collector/mixins/__init__.py -> build/lib/genome_collector/mixins /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/genome_collector copying build/lib/genome_collector/GenomeCollection.py -> build/bdist.linux-x86_64/wheel/./genome_collector copying build/lib/genome_collector/__main__.py -> build/bdist.linux-x86_64/wheel/./genome_collector copying build/lib/genome_collector/__init__.py -> build/bdist.linux-x86_64/wheel/./genome_collector copying build/lib/genome_collector/version.py -> build/bdist.linux-x86_64/wheel/./genome_collector creating build/bdist.linux-x86_64/wheel/genome_collector/mixins copying build/lib/genome_collector/mixins/BowtieMixin.py -> build/bdist.linux-x86_64/wheel/./genome_collector/mixins copying build/lib/genome_collector/mixins/NCBIMixin.py -> build/bdist.linux-x86_64/wheel/./genome_collector/mixins copying build/lib/genome_collector/mixins/FileManagerMixin.py -> build/bdist.linux-x86_64/wheel/./genome_collector/mixins copying build/lib/genome_collector/mixins/BlastMixin.py -> build/bdist.linux-x86_64/wheel/./genome_collector/mixins copying build/lib/genome_collector/mixins/__init__.py -> build/bdist.linux-x86_64/wheel/./genome_collector/mixins running install_egg_info running egg_info writing genome_collector.egg-info/PKG-INFO writing dependency_links to genome_collector.egg-info/dependency_links.txt writing requirements to genome_collector.egg-info/requires.txt writing top-level names to genome_collector.egg-info/top_level.txt reading manifest file 'genome_collector.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENCE.txt' writing manifest file 'genome_collector.egg-info/SOURCES.txt' Copying genome_collector.egg-info to build/bdist.linux-x86_64/wheel/./genome_collector-0.1.6-py3.14.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/genome_collector-0.1.6.dist-info/WHEEL creating 'dist/genome_collector-0.1.6-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'genome_collector/GenomeCollection.py' adding 'genome_collector/__init__.py' adding 'genome_collector/__main__.py' adding 'genome_collector/version.py' adding 'genome_collector/mixins/BlastMixin.py' adding 'genome_collector/mixins/BowtieMixin.py' adding 'genome_collector/mixins/FileManagerMixin.py' adding 'genome_collector/mixins/NCBIMixin.py' adding 'genome_collector/mixins/__init__.py' adding 'genome_collector-0.1.6.dist-info/licenses/LICENCE.txt' adding 'genome_collector-0.1.6.dist-info/METADATA' adding 'genome_collector-0.1.6.dist-info/WHEEL' adding 'genome_collector-0.1.6.dist-info/top_level.txt' adding 'genome_collector-0.1.6.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Finished executing setuptoolsBuildPhase Running phase: installPhase Executing pypaInstallPhase Successfully installed genome_collector-0.1.6-py3-none-any.whl Finished executing pypaInstallPhase Running phase: pythonOutputDistPhase Executing pythonOutputDistPhase Finished executing pythonOutputDistPhase Running phase: fixupPhase shrinking RPATHs of ELF executables and libraries in /nix/store/j6pw40972c4i4crgpsha65szrznzki9v-python3.14-genome_collector-0.1.6 checking for references to /build/ in /nix/store/j6pw40972c4i4crgpsha65szrznzki9v-python3.14-genome_collector-0.1.6... patching script interpreter paths in /nix/store/j6pw40972c4i4crgpsha65szrznzki9v-python3.14-genome_collector-0.1.6 stripping (with command strip and flags -S -p) in /nix/store/j6pw40972c4i4crgpsha65szrznzki9v-python3.14-genome_collector-0.1.6/lib shrinking RPATHs of ELF executables and libraries in /nix/store/8d1425mw29ck5z2fz7jxcy4xr9r0p928-python3.14-genome_collector-0.1.6-dist checking for references to /build/ in /nix/store/8d1425mw29ck5z2fz7jxcy4xr9r0p928-python3.14-genome_collector-0.1.6-dist... patching script interpreter paths in /nix/store/8d1425mw29ck5z2fz7jxcy4xr9r0p928-python3.14-genome_collector-0.1.6-dist Executing pythonRemoveTestsDir Finished executing pythonRemoveTestsDir Running phase: pythonCatchConflictsPhase Running phase: pythonRemoveBinBytecodePhase Running phase: pythonImportsCheckPhase Executing pythonImportsCheckPhase Check whether the following modules can be imported: genome_collector