these 2 derivations will be built: /nix/store/pyz2v16yd195by0pp61br98f99caibs2-source.drv /nix/store/3wrgxlh26v2ylmfnmc3frzj7dmcsv2dz-usalign-20260819.drv these 16 paths will be fetched (6.8 MiB download, 19.6 MiB unpacked): /nix/store/pnkff21wahk6b6qmz04d5h5a1a2hcv4m-curl-8.21.0 /nix/store/0fr5aijq41mvd118qzbh5p6ndfc9p0pv-curl-8.21.0-bin /nix/store/cgc2kkyzjz6315sczgqw1hv8xgcb3n16-curl-8.21.0-dev /nix/store/a6nipvngl39xcd80xndc98ykx2p72skc-curl-8.21.0-man /nix/store/67iqvbr3jha6vpv2lsabwvh32qm2ngk5-krb5-1.22.2 /nix/store/kkp0frqvy2jxjqjghpbcip23xn4ajcs0-krb5-1.22.2-dev /nix/store/5gdpafl8dkx184spgfv8pa969x22vnbm-krb5-1.22.2-lib /nix/store/bxyfpwg13x1806lk3mjqgfxj6v15rg0m-libssh2-1.11.1 /nix/store/bxvlbwh29k9app0b5ypivfcfwdyqyd80-libssh2-1.11.1-dev /nix/store/7xn3qffdvfjq1nxi1ya9qrqs15x279xg-mirrors-list /nix/store/5w5p1jdhi1j992dnp61hi56arvix2zi6-nghttp2-1.69.0 /nix/store/rl7539dfifk1kvlgvr36klv7pr7kqcrs-nghttp2-1.69.0-dev /nix/store/565jvpqws8qimawxq3glnpk52f21zygd-nghttp2-1.69.0-lib /nix/store/ry0iipbxrpmh0wr0l66bg2w6v2nqa0gw-openssl-3.6.3 /nix/store/pdd049jvlp94zqs4j9kphrpgzcvdqp9c-openssl-3.6.3-bin /nix/store/c2cvmmsg2wz2wiszc1ywj5vr4c2k0ldz-openssl-3.6.3-dev building '/nix/store/zrf594yhdl9qmb20ffzk18wprh1css56-source.drv' source> structuredAttrs is enabled source> source> trying https://github.com/pylelab/USalign/archive/fa4376bd99fa17a123d05d7ea47cf6574c80d64f.tar.gz source> % Total % Received % Xferd Average Speed Time Time Time Current source> Dload Upload Total Spent Left Speed source> 0 0 0 0 0 0 0 0 0 source> 100 277.5k 0 277.5k 0 0 368.3k 0 0 source> unpacking source archive /build/download.tar.gz building '/nix/store/3wrgxlh26v2ylmfnmc3frzj7dmcsv2dz-usalign-20260819.drv' usalign-20260819> Running phase: unpackPhase usalign-20260819> unpacking source archive /nix/store/a55fvgnx49hly01753imv0zriir0816n-source usalign-20260819> source root is source usalign-20260819> Running phase: patchPhase usalign-20260819> Running phase: updateAutotoolsGnuConfigScriptsPhase usalign-20260819> Running phase: configurePhase usalign-20260819> no configure script, doing nothing usalign-20260819> Running phase: buildPhase usalign-20260819> build flags: -j48 SHELL=/nix/store/7ik8057hajl6vq9j40h3jracxjn0bb5x-bash-5.3p15/bin/bash CC=c++ usalign-20260819> c++ -O3 -ffast-math qTMclust.cpp -o qTMclust usalign-20260819> c++ -O3 -ffast-math USalign.cpp -o USalign usalign-20260819> c++ -O3 -ffast-math USFlexalign.cpp -o USFlexalign usalign-20260819> c++ -O3 -ffast-math TMalign.cpp -o TMalign usalign-20260819> c++ -O3 -ffast-math TMscore.cpp -o TMscore usalign-20260819> c++ -O3 -ffast-math MMalign.cpp -o MMalign usalign-20260819> c++ -O3 -ffast-math se.cpp -o se usalign-20260819> c++ -O3 -ffast-math pdb2xyz.cpp -o pdb2xyz usalign-20260819> c++ -O3 -ffast-math xyz_sfetch.cpp -o xyz_sfetch usalign-20260819> c++ -O3 -ffast-math pdb2fasta.cpp -o pdb2fasta usalign-20260819> c++ -O3 -ffast-math biounitasym.cpp -o biounitasym usalign-20260819> c++ -O3 -ffast-math pdb2ss.cpp -o pdb2ss usalign-20260819> c++ -O3 -ffast-math NWalign.cpp -o NWalign usalign-20260819> c++ -O3 -ffast-math HwRMSD.cpp -o HwRMSD usalign-20260819> c++ -O3 -ffast-math cif2pdb.cpp -o cif2pdb usalign-20260819> c++ -O3 -ffast-math pdbAtomName.cpp -o pdbAtomName usalign-20260819> c++ -O3 -ffast-math addChainID.cpp -o addChainID usalign-20260819> Running phase: installPhase usalign-20260819> Running phase: fixupPhase usalign-20260819> shrinking RPATHs of ELF executables and libraries in /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819 usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/qTMclust usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/USalign usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/TMalign usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/TMscore usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/MMalign usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/se usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/pdb2xyz usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/xyz_sfetch usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/pdb2fasta usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/biounitasym usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/pdb2ss usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/NWalign usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/HwRMSD usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/cif2pdb usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/pdbAtomName usalign-20260819> shrinking /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin/addChainID usalign-20260819> checking for references to /build/ in /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819... usalign-20260819> patching script interpreter paths in /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819 usalign-20260819> stripping (with command strip and flags -S -p) in /nix/store/wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819/bin post-build step Route build to niks3: ok Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org time=2026-08-20T03:45:09.699+09:00 level=INFO msg="Uploading 1 paths to niks3.sjanglab.org (6 already cached)" time=2026-08-20T03:45:09.699+09:00 level=INFO msg="Uploading wphhhgmi9lf41ijwwcsaipbl36s78c1a-usalign-20260819 (5.3MB)" time=2026-08-20T03:45:10.600+09:00 level=INFO msg="Uploading 1 narinfos" time=2026-08-20T03:45:10.983+09:00 level=INFO msg="Upload complete. (1.373s)"